Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86059.t1 | XP_004489433.1 | 100 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 3.00E-26 | 127.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86059.t1 | P46302 | 90.8 | 65 | 6 | 0 | 1 | 65 | 1 | 65 | 1.4e-24 | 112.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86059.t1 | Q2HWC2 | 100.0 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 2.1e-26 | 127.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene99823 | MS.gene86059 | PPI |
MS.gene87287 | MS.gene86059 | PPI |
MS.gene96825 | MS.gene86059 | PPI |
MS.gene86059 | MS.gene019309 | PPI |
MS.gene82426 | MS.gene86059 | PPI |
MS.gene86059 | MS.gene23314 | PPI |
MS.gene028153 | MS.gene86059 | PPI |
MS.gene86059 | MS.gene015586 | PPI |
MS.gene69814 | MS.gene86059 | PPI |
MS.gene86059 | MS.gene50744 | PPI |
MS.gene86059 | MS.gene83444 | PPI |
MS.gene87285 | MS.gene86059 | PPI |
MS.gene031549 | MS.gene86059 | PPI |
MS.gene003693 | MS.gene86059 | PPI |
MS.gene86059 | MS.gene031256 | PPI |
MS.gene072782 | MS.gene86059 | PPI |
MS.gene006754 | MS.gene86059 | PPI |
MS.gene72768 | MS.gene86059 | PPI |
MS.gene031254 | MS.gene86059 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86059.t1 | MTR_6g013210 | 100.000 | 65 | 0 | 0 | 1 | 65 | 1 | 65 | 8.41e-42 | 130 |
MS.gene86059.t1 | MTR_4g081180 | 90.769 | 65 | 6 | 0 | 1 | 65 | 150 | 214 | 8.23e-36 | 119 |
MS.gene86059.t1 | MTR_6g013410 | 81.538 | 65 | 11 | 1 | 1 | 65 | 38 | 101 | 4.19e-31 | 104 |
MS.gene86059.t1 | MTR_8g089765 | 71.667 | 60 | 17 | 0 | 1 | 60 | 1 | 60 | 5.17e-25 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86059.t1 | AT5G03850 | 90.769 | 65 | 5 | 1 | 1 | 65 | 1 | 64 | 1.28e-35 | 114 |
MS.gene86059.t1 | AT3G10090 | 90.769 | 65 | 5 | 1 | 1 | 65 | 1 | 64 | 1.28e-35 | 114 |
MS.gene86059.t1 | AT5G64140 | 89.231 | 65 | 6 | 1 | 1 | 65 | 1 | 64 | 1.09e-34 | 112 |
Find 19 sgRNAs with CRISPR-Local
Find 20 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGTTGTTGTGAAAGTTAT+GGG | 0.420809 | 6.3:+8403729 | MS.gene86059:CDS |
AGGATGTCTCCCTCCCTAAC+TGG | 0.425936 | 6.3:-8403840 | None:intergenic |
TGCTGTTGTTGTGAAAGTTA+TGG | 0.441002 | 6.3:+8403728 | MS.gene86059:CDS |
GAGTCTTCTTGCTTCTCTCT+CGG | 0.464434 | 6.3:-8403877 | None:intergenic |
GAATGTGAAGGGACCAGTTA+GGG | 0.464736 | 6.3:+8403827 | MS.gene86059:CDS |
AACCTGAGTGACTTGTCCTC+TGG | 0.467654 | 6.3:-8403763 | None:intergenic |
GGAATGTGAAGGGACCAGTT+AGG | 0.473428 | 6.3:+8403826 | MS.gene86059:CDS |
TTGCTTCTCTCTCGGACTCA+AGG | 0.492027 | 6.3:-8403869 | None:intergenic |
TCTCGGACTCAAGGAGGGTA+AGG | 0.523556 | 6.3:-8403860 | None:intergenic |
ATCAAAATCGTCACATCATG+AGG | 0.548592 | 6.3:+8403805 | MS.gene86059:CDS |
GTGAAAGTTATGGGTCGCAC+TGG | 0.579551 | 6.3:+8403738 | MS.gene86059:CDS |
TGTGAAGGGACCAGTTAGGG+AGG | 0.582336 | 6.3:+8403830 | MS.gene86059:CDS |
CTTCTCTCTCGGACTCAAGG+AGG | 0.604153 | 6.3:-8403866 | None:intergenic |
TTCTCTCTCGGACTCAAGGA+GGG | 0.617751 | 6.3:-8403865 | None:intergenic |
TCACATCATGAGGAATGTGA+AGG | 0.626309 | 6.3:+8403815 | MS.gene86059:CDS |
CACATCATGAGGAATGTGAA+GGG | 0.632733 | 6.3:+8403816 | MS.gene86059:CDS |
ATCCAGAGGACAAGTCACTC+AGG | 0.638739 | 6.3:+8403761 | MS.gene86059:CDS |
GTGAAGGGACCAGTTAGGGA+GGG | 0.647685 | 6.3:+8403831 | MS.gene86059:CDS |
ATGGGTCGCACTGGATCCAG+AGG | 0.658326 | 6.3:+8403747 | MS.gene86059:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ATCAAAATCGTCACATCATG+AGG | + | chr6.3:8403805-8403824 | MS.gene86059:CDS | 35.0% | |
GCTGTTGTTGTGAAAGTTAT+GGG | + | chr6.3:8403729-8403748 | MS.gene86059:CDS | 35.0% | |
TGCTGTTGTTGTGAAAGTTA+TGG | + | chr6.3:8403728-8403747 | MS.gene86059:CDS | 35.0% | |
! | TCAGGTTAGAGTGAAGTTTT+TGG | + | chr6.3:8403779-8403798 | MS.gene86059:CDS | 35.0% |
CACATCATGAGGAATGTGAA+GGG | + | chr6.3:8403816-8403835 | MS.gene86059:CDS | 40.0% | |
TCACATCATGAGGAATGTGA+AGG | + | chr6.3:8403815-8403834 | MS.gene86059:CDS | 40.0% | |
GAATGTGAAGGGACCAGTTA+GGG | + | chr6.3:8403827-8403846 | MS.gene86059:CDS | 45.0% | |
GAGTCTTCTTGCTTCTCTCT+CGG | - | chr6.3:8403880-8403899 | None:intergenic | 45.0% | |
ATCCAGAGGACAAGTCACTC+AGG | + | chr6.3:8403761-8403780 | MS.gene86059:CDS | 50.0% | |
GGAATGTGAAGGGACCAGTT+AGG | + | chr6.3:8403826-8403845 | MS.gene86059:CDS | 50.0% | |
GTGAAAGTTATGGGTCGCAC+TGG | + | chr6.3:8403738-8403757 | MS.gene86059:CDS | 50.0% | |
TTCTCTCTCGGACTCAAGGA+GGG | - | chr6.3:8403868-8403887 | None:intergenic | 50.0% | |
TTGCTTCTCTCTCGGACTCA+AGG | - | chr6.3:8403872-8403891 | None:intergenic | 50.0% | |
! | AACCTGAGTGACTTGTCCTC+TGG | - | chr6.3:8403766-8403785 | None:intergenic | 50.0% |
AGGATGTCTCCCTCCCTAAC+TGG | - | chr6.3:8403843-8403862 | None:intergenic | 55.0% | |
CTTCTCTCTCGGACTCAAGG+AGG | - | chr6.3:8403869-8403888 | None:intergenic | 55.0% | |
GTGAAGGGACCAGTTAGGGA+GGG | + | chr6.3:8403831-8403850 | MS.gene86059:CDS | 55.0% | |
TCTCGGACTCAAGGAGGGTA+AGG | - | chr6.3:8403863-8403882 | None:intergenic | 55.0% | |
TGTGAAGGGACCAGTTAGGG+AGG | + | chr6.3:8403830-8403849 | MS.gene86059:CDS | 55.0% | |
ATGGGTCGCACTGGATCCAG+AGG | + | chr6.3:8403747-8403766 | MS.gene86059:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 8403708 | 8403905 | 8403708 | ID=MS.gene86059 |
chr6.3 | mRNA | 8403708 | 8403905 | 8403708 | ID=MS.gene86059.t1;Parent=MS.gene86059 |
chr6.3 | exon | 8403708 | 8403905 | 8403708 | ID=MS.gene86059.t1.exon1;Parent=MS.gene86059.t1 |
chr6.3 | CDS | 8403708 | 8403905 | 8403708 | ID=cds.MS.gene86059.t1;Parent=MS.gene86059.t1 |
Gene Sequence |
Protein sequence |