AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038257

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038257.t1 MTR_5g090600 80.882 476 26 2 1 428 1 459 0.0 758
MS.gene038257.t1 MTR_5g090580 74.268 478 71 4 1 426 1 478 0.0 690
MS.gene038257.t1 MTR_5g090700 69.151 483 93 6 1 428 1 482 0.0 634
MS.gene038257.t1 MTR_5g090660 66.736 478 107 4 1 427 1 477 0.0 605
MS.gene038257.t1 MTR_5g090610 65.966 476 102 4 1 427 1 465 0.0 603
MS.gene038257.t1 MTR_5g090670 66.528 481 105 6 1 426 1 480 0.0 601
MS.gene038257.t1 MTR_5g090620 65.553 479 112 5 1 426 1 479 0.0 600
MS.gene038257.t1 MTR_5g090630 65.409 477 106 5 1 426 1 469 0.0 581
MS.gene038257.t1 MTR_5g098930 59.583 480 131 9 1 426 1 471 0.0 518
MS.gene038257.t1 MTR_5g090650 62.428 346 95 5 1 343 1 314 1.32e-138 399
MS.gene038257.t1 MTR_5g090690 55.155 388 107 6 65 416 18 374 7.93e-119 352
MS.gene038257.t1 MTR_5g070040 34.884 473 244 14 2 423 8 467 8.85e-80 254
MS.gene038257.t1 MTR_5g070090 35.608 469 239 14 2 422 8 461 5.91e-76 244
MS.gene038257.t1 MTR_2g040530 35.611 483 227 16 1 420 1 462 8.45e-76 244
MS.gene038257.t1 MTR_2g046820 35.343 481 229 14 1 420 1 460 1.06e-75 243
MS.gene038257.t1 MTR_2g046750 34.232 482 236 16 1 420 1 463 5.39e-72 234
MS.gene038257.t1 MTR_3g009510 27.686 484 276 17 1 420 1 474 3.83e-47 169
MS.gene038257.t1 MTR_7g117170 29.614 466 265 13 6 418 16 471 4.85e-44 160
MS.gene038257.t1 MTR_6g023665 27.907 473 270 14 2 418 10 467 6.84e-42 154
MS.gene038257.t1 MTR_6g488280 27.273 473 273 14 2 418 3 460 2.24e-40 150
MS.gene038257.t1 MTR_0428s0010 27.273 473 273 14 2 418 3 460 2.24e-40 150
MS.gene038257.t1 MTR_8g006220 31.111 360 212 12 2 340 3 347 1.72e-39 148
MS.gene038257.t1 MTR_8g465670 30.571 350 219 9 2 340 4 340 4.22e-39 147
MS.gene038257.t1 MTR_8g006730 24.583 480 279 14 2 418 3 462 4.36e-37 141
MS.gene038257.t1 MTR_8g006710 25.455 495 267 15 2 424 3 467 9.40e-37 140
MS.gene038257.t1 MTR_8g027870 26.998 463 275 13 6 418 19 468 1.23e-33 132
MS.gene038257.t1 MTR_0184s0040 27.158 475 272 17 2 418 18 476 3.56e-33 130
MS.gene038257.t1 MTR_0078s0190 27.158 475 272 17 2 418 18 476 3.56e-33 130
MS.gene038257.t1 MTR_8g027885 26.824 466 272 16 6 418 19 468 2.09e-32 128
MS.gene038257.t1 MTR_6g033675 29.805 359 210 13 3 340 2 339 2.74e-32 128
MS.gene038257.t1 MTR_8g074550 25.403 496 289 17 2 425 5 491 1.31e-30 123
MS.gene038257.t1 MTR_5g019580 28.412 359 222 13 2 338 4 349 2.89e-30 122
MS.gene038257.t1 MTR_0078s0010 27.350 351 230 11 2 340 3 340 3.04e-30 122
MS.gene038257.t1 MTR_0184s0030 25.957 470 274 17 2 412 3 457 2.77e-29 119
MS.gene038257.t1 MTR_8g009050 25.314 478 278 16 2 418 3 462 4.16e-29 119
MS.gene038257.t1 MTR_8g006270 30.925 346 218 11 2 338 3 336 7.31e-29 118
MS.gene038257.t1 MTR_8g077590 27.778 360 217 13 4 343 8 344 8.71e-29 118
MS.gene038257.t1 MTR_8g009055 25.474 475 281 16 2 418 3 462 1.91e-28 117
MS.gene038257.t1 MTR_7g047030 26.857 350 233 10 2 340 3 340 3.12e-28 116
MS.gene038257.t1 MTR_7g047270 26.857 350 233 10 2 340 3 340 3.12e-28 116
MS.gene038257.t1 MTR_0078s0060 29.745 353 218 12 2 340 3 339 4.17e-28 116
MS.gene038257.t1 MTR_8g009073 24.843 479 277 14 2 418 3 460 4.78e-27 113
MS.gene038257.t1 MTR_1g019510 24.788 472 285 14 2 418 3 459 3.06e-26 110
MS.gene038257.t1 MTR_6g005600 27.841 352 233 9 3 343 4 345 5.29e-26 110
MS.gene038257.t1 MTR_8g006260 26.327 471 269 17 3 411 4 458 1.06e-25 109
MS.gene038257.t1 MTR_6g033625 24.494 494 260 17 3 418 2 460 1.62e-25 108
MS.gene038257.t1 MTR_8g012635 29.041 365 212 14 2 340 3 346 1.93e-25 108
MS.gene038257.t1 MTR_6g033725 27.701 361 212 15 3 340 2 336 2.94e-25 107
MS.gene038257.t1 MTR_8g009067 24.319 477 284 15 2 419 3 461 3.21e-25 107
MS.gene038257.t1 MTR_8g008990 25.210 476 283 15 2 418 3 464 3.44e-25 107
MS.gene038257.t1 MTR_8g009063 24.262 474 288 12 2 418 10 469 1.01e-24 106
MS.gene038257.t1 MTR_6g033615 24.573 468 264 14 3 411 2 439 1.66e-24 105
MS.gene038257.t1 MTR_0078s0200 28.213 319 202 12 2 306 3 308 1.69e-24 103
MS.gene038257.t1 MTR_7g046490 25.572 481 272 16 2 419 3 460 6.94e-24 103
MS.gene038257.t1 MTR_8g012745 26.667 360 231 11 2 343 3 347 2.77e-23 102
MS.gene038257.t1 MTR_5g019580 25.798 376 182 12 2 338 56 373 1.18e-22 100
MS.gene038257.t1 MTR_8g012650 29.032 248 149 8 109 340 110 346 3.74e-22 99.0
MS.gene038257.t1 MTR_6g033660 27.072 362 209 13 6 340 5 338 1.11e-21 97.4
MS.gene038257.t1 MTR_8g008970 26.136 352 232 11 2 340 3 339 1.28e-21 98.2
MS.gene038257.t1 MTR_3g069710 25.620 484 260 19 2 424 9 453 2.20e-21 96.3
MS.gene038257.t1 MTR_2g098430 26.648 364 218 17 2 339 3 343 7.63e-21 95.1
MS.gene038257.t1 MTR_6g078320 24.843 318 219 9 4 303 10 325 8.97e-21 94.7
MS.gene038257.t1 MTR_8g006230 29.046 241 146 8 83 310 26 254 1.37e-20 91.7
MS.gene038257.t1 MTR_4g095008 25.450 389 215 12 87 419 92 461 1.58e-19 91.3
MS.gene038257.t1 MTR_5g029800 23.413 504 263 20 5 422 11 477 1.87e-19 90.9
MS.gene038257.t1 MTR_3g009500 29.078 282 168 13 1 263 1 269 7.67e-19 86.3
MS.gene038257.t1 MTR_0536s0020 25.301 498 258 20 2 420 15 477 1.12e-18 88.6
MS.gene038257.t1 MTR_5g464760 25.936 374 225 13 2 343 9 362 1.17e-18 88.2
MS.gene038257.t1 MTR_4g117890 22.754 501 271 17 2 422 10 474 1.94e-18 87.8
MS.gene038257.t1 MTR_5g090680 92.857 42 3 0 1 42 1 42 3.93e-18 80.1
MS.gene038257.t1 MTR_8g066610 24.291 494 269 17 5 420 9 475 4.65e-18 86.7
MS.gene038257.t1 MTR_4g031800 22.376 505 278 17 2 426 6 476 5.05e-18 86.3
MS.gene038257.t1 MTR_8g064880 26.230 366 219 15 6 343 10 352 1.03e-17 85.5
MS.gene038257.t1 MTR_1g107360 23.941 472 292 19 5 425 9 464 1.18e-17 85.1
MS.gene038257.t1 MTR_4g082810 26.115 314 210 10 4 303 6 311 1.39e-17 84.7
MS.gene038257.t1 MTR_4g094920 24.359 468 264 16 15 419 36 476 1.73e-17 84.7
MS.gene038257.t1 MTR_5g464810 25.269 372 224 14 4 343 11 360 2.70e-17 84.3
MS.gene038257.t1 MTR_5g064240 25.269 372 224 14 4 343 11 360 2.70e-17 84.3
MS.gene038257.t1 MTR_8g009067 24.058 345 210 9 122 419 4 343 2.85e-17 83.2
MS.gene038257.t1 MTR_6g035265 22.428 486 276 15 8 420 14 471 6.13e-17 83.2
MS.gene038257.t1 MTR_8g009073 26.641 259 141 7 205 418 77 331 6.97e-17 81.6
MS.gene038257.t1 MTR_5g035580 23.444 482 268 20 5 424 13 455 1.80e-16 81.6
MS.gene038257.t1 MTR_3g069690 23.984 492 266 19 2 427 5 454 2.12e-16 81.3
MS.gene038257.t1 MTR_3g009520 27.843 255 160 10 6 243 7 254 2.56e-16 79.0
MS.gene038257.t1 MTR_4g082820 25.962 312 208 11 5 303 7 308 4.55e-16 80.5
MS.gene038257.t1 MTR_3g049970 22.245 490 286 16 5 425 9 472 1.02e-15 79.3
MS.gene038257.t1 MTR_7g102460 22.530 506 284 15 3 425 7 487 1.13e-15 79.3
MS.gene038257.t1 MTR_6g038240 23.011 465 288 18 7 423 13 455 1.57e-15 78.6
MS.gene038257.t1 MTR_1g107350 23.361 488 277 19 5 422 8 468 2.15e-15 78.2
MS.gene038257.t1 MTR_7g080935 24.383 324 198 11 3 303 9 308 2.85e-15 77.8
MS.gene038257.t1 MTR_8g064870 23.757 362 231 13 5 343 11 350 2.97e-15 77.8
MS.gene038257.t1 MTR_1g032490 24.798 371 214 17 5 343 10 347 3.75e-15 77.8
MS.gene038257.t1 MTR_0036s0220 23.607 377 234 14 5 349 12 366 3.94e-15 77.4
MS.gene038257.t1 MTR_1g107285 26.923 286 147 12 83 343 91 339 1.68e-14 75.5
MS.gene038257.t1 MTR_8g012730 30.093 216 94 9 145 340 5 183 1.96e-14 74.3
MS.gene038257.t1 MTR_3g479470 23.483 379 227 12 2 343 10 362 2.63e-14 75.1
MS.gene038257.t1 MTR_7g012120 23.077 494 274 18 5 420 16 481 2.64e-14 75.1
MS.gene038257.t1 MTR_5g072820 21.983 464 293 12 4 422 9 448 3.35e-14 74.7
MS.gene038257.t1 MTR_5g066410 26.667 270 136 10 90 340 91 317 6.49e-14 73.6
MS.gene038257.t1 MTR_5g072840 21.627 467 295 13 4 424 9 450 8.45e-14 73.2
MS.gene038257.t1 MTR_5g031840 23.237 482 289 20 1 422 1 461 8.78e-14 73.2
MS.gene038257.t1 MTR_1g107365 23.784 370 207 14 5 343 45 370 9.17e-14 73.6
MS.gene038257.t1 MTR_8g088560 25.796 314 199 11 5 300 10 307 9.28e-14 73.2
MS.gene038257.t1 MTR_8g083290 23.045 486 282 16 6 424 5 465 1.17e-13 72.8
MS.gene038257.t1 MTR_1g107315 24.523 367 224 13 3 343 6 345 1.27e-13 72.8
MS.gene038257.t1 MTR_5g072830 21.767 464 294 13 4 422 9 448 1.44e-13 72.8
MS.gene038257.t1 MTR_5g035560 25.836 329 201 11 5 311 11 318 1.65e-13 72.8
MS.gene038257.t1 MTR_1g019520 25.926 216 115 4 255 426 2 216 1.80e-13 69.7
MS.gene038257.t1 MTR_7g080940 23.765 324 200 11 3 303 9 308 1.93e-13 72.4
MS.gene038257.t1 MTR_1g062380 21.298 493 300 18 6 424 17 495 2.13e-13 72.4
MS.gene038257.t1 MTR_8g466240 22.284 359 221 13 3 339 6 328 4.20e-13 71.2
MS.gene038257.t1 MTR_5g067170 25.077 323 185 12 8 300 14 309 4.90e-13 71.2
MS.gene038257.t1 MTR_6g038200 23.292 322 206 9 4 304 10 311 5.00e-13 70.9
MS.gene038257.t1 MTR_3g079480 23.861 461 265 17 2 402 18 452 5.47e-13 70.9
MS.gene038257.t1 MTR_8g012630 39.080 87 50 1 257 340 204 290 8.87e-13 70.1
MS.gene038257.t1 MTR_1g107380 22.312 372 211 11 109 423 123 473 1.04e-12 70.1
MS.gene038257.t1 MTR_6g038220 25.076 327 201 12 7 309 13 319 1.15e-12 69.7
MS.gene038257.t1 MTR_8g007565 28.839 267 143 12 93 340 103 341 1.27e-12 69.7
MS.gene038257.t1 MTR_5g072810 22.785 474 280 18 4 422 11 453 1.60e-12 69.3
MS.gene038257.t1 MTR_5g098960 25.815 368 201 15 1 339 3 327 2.45e-12 68.9
MS.gene038257.t1 MTR_5g072860 20.851 470 302 13 5 424 18 467 2.72e-12 68.6
MS.gene038257.t1 MTR_5g016480 24.555 281 131 9 203 424 214 472 2.87e-12 68.6
MS.gene038257.t1 MTR_7g080900 21.557 334 198 13 2 303 9 310 3.48e-12 68.2
MS.gene038257.t1 MTR_3g031400 22.391 460 291 16 4 423 17 450 3.80e-12 68.2
MS.gene038257.t1 MTR_5g040030 24.159 327 213 10 2 304 11 326 4.23e-12 68.2
MS.gene038257.t1 MTR_6g014220 22.289 498 285 20 2 423 7 478 4.46e-12 68.2
MS.gene038257.t1 MTR_5g090590 55.556 54 24 0 351 404 1 54 5.86e-12 61.2
MS.gene038257.t1 MTR_3g031450 23.318 446 284 14 4 412 17 441 5.86e-12 67.8
MS.gene038257.t1 MTR_4g485620 23.676 321 196 10 17 306 1 303 5.95e-12 67.8
MS.gene038257.t1 MTR_6g038230 23.341 437 269 18 4 402 10 418 7.40e-12 67.4
MS.gene038257.t1 MTR_1g107375 22.192 365 218 13 5 343 8 332 8.89e-12 67.0
MS.gene038257.t1 MTR_8g007650 28.464 267 144 12 93 340 103 341 9.29e-12 67.0
MS.gene038257.t1 MTR_5g031830 22.614 482 286 19 5 422 12 470 9.39e-12 67.0
MS.gene038257.t1 MTR_0009s0240 22.851 477 282 24 3 419 5 455 1.08e-11 67.0
MS.gene038257.t1 MTR_2g034990 22.699 326 197 11 5 300 11 311 1.20e-11 66.6
MS.gene038257.t1 MTR_6g038300 24.149 323 198 12 5 303 11 310 1.67e-11 66.2
MS.gene038257.t1 MTR_2g035020 24.398 332 184 15 5 300 11 311 1.76e-11 66.2
MS.gene038257.t1 MTR_7g080950 24.062 320 204 12 3 303 4 303 2.15e-11 65.9
MS.gene038257.t1 MTR_7g102520 21.231 325 215 10 7 303 14 325 3.16e-11 65.5
MS.gene038257.t1 MTR_5g004940 25.333 225 125 7 223 422 171 377 6.30e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038257.t1 AT3G21760 35.714 490 244 9 3 427 2 485 1.21e-88 278
MS.gene038257.t1 AT3G21750 33.542 480 254 7 3 426 2 472 3.93e-88 276
MS.gene038257.t1 AT3G21780 35.477 482 244 10 3 427 2 473 5.42e-87 273
MS.gene038257.t1 AT3G21790 34.908 487 248 9 3 426 2 482 8.76e-87 273
MS.gene038257.t1 AT4G15280 35.417 480 247 11 3 424 2 476 4.64e-81 258
MS.gene038257.t1 AT4G15280 35.417 480 247 11 3 424 34 508 1.14e-80 258
MS.gene038257.t1 AT3G21800 32.724 492 254 11 1 427 1 480 1.20e-74 241
MS.gene038257.t1 AT1G07250 33.814 485 238 13 1 419 2 469 9.06e-74 239
MS.gene038257.t1 AT2G29730 33.056 481 238 13 1 419 1 459 1.45e-68 225
MS.gene038257.t1 AT1G07240 32.432 481 240 14 1 412 1 465 7.90e-66 218
MS.gene038257.t1 AT2G29740 32.645 484 245 15 2 420 5 472 4.42e-62 208
MS.gene038257.t1 AT1G07260 31.622 487 251 13 3 424 4 473 3.28e-61 206
MS.gene038257.t1 AT4G15260 33.602 372 174 10 116 427 1 359 1.93e-60 201
MS.gene038257.t1 AT2G29710 32.645 484 236 16 1 419 1 459 1.24e-58 199
MS.gene038257.t1 AT2G29750 31.762 488 247 16 2 420 5 475 4.77e-55 190
MS.gene038257.t1 AT3G16520 29.915 351 221 9 1 340 1 337 8.49e-38 142
MS.gene038257.t1 AT3G16520 29.915 351 221 9 1 340 1 337 1.23e-37 142
MS.gene038257.t1 AT3G16520 29.915 351 221 9 1 340 1 337 1.46e-37 142
MS.gene038257.t1 AT4G01070 26.124 467 281 14 2 415 5 460 4.11e-36 139
MS.gene038257.t1 AT4G01070 29.345 351 225 10 2 342 5 342 1.49e-35 134
MS.gene038257.t1 AT4G15270 37.143 210 122 6 3 203 2 210 2.93e-35 130
MS.gene038257.t1 AT5G66690 27.778 360 219 13 1 340 3 341 3.05e-35 136
MS.gene038257.t1 AT4G15270 35.874 223 133 6 3 216 2 223 7.53e-35 131
MS.gene038257.t1 AT4G15270 31.746 126 83 2 302 426 179 302 9.11e-11 63.2
MS.gene038257.t1 AT4G36770 31.503 346 211 11 8 340 7 339 1.13e-33 131
MS.gene038257.t1 AT4G15270 37.500 200 115 6 3 193 2 200 7.88e-32 121
MS.gene038257.t1 AT5G26310 25.052 483 264 19 1 413 3 457 1.41e-31 126
MS.gene038257.t1 AT1G01420 24.731 465 289 11 5 418 8 462 1.12e-29 120
MS.gene038257.t1 AT1G01420 24.731 465 289 11 5 418 11 465 1.26e-29 120
MS.gene038257.t1 AT1G01390 28.406 345 228 12 5 340 8 342 1.22e-28 117
MS.gene038257.t1 AT1G01390 28.406 345 228 12 5 340 25 359 1.38e-28 117
MS.gene038257.t1 AT2G18570 27.042 355 227 12 1 340 1 338 2.50e-27 114
MS.gene038257.t1 AT3G50740 23.750 480 295 16 1 420 3 471 3.19e-27 114
MS.gene038257.t1 AT2G18560 28.390 236 153 7 112 340 22 248 1.11e-18 87.8
MS.gene038257.t1 AT5G12890 22.614 482 291 20 2 416 7 473 2.42e-17 84.3
MS.gene038257.t1 AT2G15480 22.754 501 276 17 2 420 7 478 3.00e-17 84.0
MS.gene038257.t1 AT2G15480 22.505 511 275 17 2 420 7 488 3.74e-17 84.0
MS.gene038257.t1 AT3G21560 25.217 345 181 15 5 304 12 324 9.06e-17 82.8
MS.gene038257.t1 AT2G36760 21.980 505 285 21 7 428 16 494 1.82e-16 81.6
MS.gene038257.t1 AT3G55700 25.182 274 146 8 193 424 196 452 4.45e-16 80.5
MS.gene038257.t1 AT2G36750 23.566 488 289 18 7 424 12 485 5.99e-16 80.1
MS.gene038257.t1 AT3G46670 22.153 483 266 18 6 422 10 448 2.58e-15 78.2
MS.gene038257.t1 AT3G55710 25.261 479 275 17 2 424 5 456 3.01e-15 77.8
MS.gene038257.t1 AT5G59590 23.305 472 280 20 1 420 6 447 3.81e-15 77.4
MS.gene038257.t1 AT3G46660 22.151 465 296 20 3 422 12 455 4.35e-15 77.4
MS.gene038257.t1 AT3G46700 21.915 470 289 18 1 422 5 444 4.66e-15 77.4
MS.gene038257.t1 AT5G59580 21.983 464 291 21 3 420 7 445 7.01e-15 76.6
MS.gene038257.t1 AT3G02100 22.822 482 291 18 1 427 9 464 1.04e-14 76.3
MS.gene038257.t1 AT1G78270 25.789 380 206 13 2 338 10 356 1.39e-14 75.9
MS.gene038257.t1 AT2G30150 23.769 467 288 16 5 426 13 456 1.47e-14 75.9
MS.gene038257.t1 AT1G22400 21.912 502 294 19 2 428 10 488 4.94e-14 74.3
MS.gene038257.t1 AT2G36770 21.869 503 288 20 7 428 16 494 8.22e-14 73.6
MS.gene038257.t1 AT2G30140 20.925 454 311 13 5 424 13 452 8.57e-14 73.6
MS.gene038257.t1 AT2G30150 23.661 448 274 16 9 411 1 425 9.38e-14 73.2
MS.gene038257.t1 AT3G46650 21.610 472 273 19 3 423 8 433 1.17e-13 72.8
MS.gene038257.t1 AT2G15490 21.713 502 275 18 6 420 8 478 1.66e-13 72.8
MS.gene038257.t1 AT3G53160 23.904 502 279 18 7 428 10 488 2.43e-13 72.0
MS.gene038257.t1 AT2G15490 21.912 502 271 19 6 420 8 475 3.66e-13 71.6
MS.gene038257.t1 AT1G51210 23.955 359 211 14 3 341 18 334 4.74e-13 70.9
MS.gene038257.t1 AT3G46690 21.971 487 273 19 1 422 5 449 5.74e-13 70.9
MS.gene038257.t1 AT5G03490 25.056 447 274 19 2 425 16 424 7.18e-13 70.5
MS.gene038257.t1 AT1G05680 22.531 324 208 11 4 304 5 308 7.95e-13 70.5
MS.gene038257.t1 AT2G30140 20.879 455 311 14 5 424 13 453 1.04e-12 70.1
MS.gene038257.t1 AT4G15500 26.549 226 145 7 94 305 97 315 1.84e-12 69.3
MS.gene038257.t1 AT1G73880 23.124 493 272 21 3 424 12 468 2.16e-12 68.9
MS.gene038257.t1 AT4G34135 23.684 380 212 15 2 340 8 350 2.41e-12 68.9
MS.gene038257.t1 AT1G22340 21.011 376 223 11 2 334 10 354 6.76e-12 67.8
MS.gene038257.t1 AT1G05675 23.724 333 216 14 4 317 5 318 1.22e-11 66.6
MS.gene038257.t1 AT2G36780 21.255 494 294 21 7 424 16 490 1.44e-11 66.6
MS.gene038257.t1 AT3G11340 23.567 471 280 21 3 424 7 446 1.79e-11 66.2
MS.gene038257.t1 AT2G36800 24.308 325 204 16 7 303 14 324 4.02e-11 65.1
MS.gene038257.t1 AT1G22360 21.563 371 230 12 2 336 7 352 5.33e-11 64.7
MS.gene038257.t1 AT2G31750 21.757 478 295 18 3 426 6 458 5.83e-11 64.7
MS.gene038257.t1 AT4G15490 22.917 336 206 12 2 305 5 319 6.23e-11 64.7
MS.gene038257.t1 AT1G22360 21.563 371 230 12 2 336 7 352 6.27e-11 64.7
MS.gene038257.t1 AT5G14860 24.848 330 202 12 7 304 10 325 6.68e-11 64.7
MS.gene038257.t1 AT4G34135 23.547 344 198 14 2 304 8 327 6.92e-11 63.9
MS.gene038257.t1 AT2G31790 23.385 325 208 12 2 304 5 310 7.43e-11 64.3
MS.gene038257.t1 AT5G05870 22.947 475 281 20 5 422 8 454 7.75e-11 64.3
MS.gene038257.t1 AT2G31750 21.895 475 292 18 3 423 6 455 7.96e-11 64.3

Find 117 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAACAATGTCCTTGGTTT+TGG 0.184269 5.4:-71540966 None:intergenic
GGATCTTCTTCCAATTATTT+AGG 0.222600 5.4:+71541598 MS.gene038257:CDS
ATCGGTAAACTTGTTAATTC+AGG 0.233481 5.4:-71540908 None:intergenic
TTTGGGCTCAGGACCTAATA+TGG 0.257072 5.4:-71540948 None:intergenic
AATTAAACGACCTAAATAAT+TGG 0.261283 5.4:-71541608 None:intergenic
CACCCTTCGGTGCAGGTTTA+CGG 0.268551 5.4:-71541135 None:intergenic
TGGAGATTGCACTAGATTAT+AGG 0.278203 5.4:+71541431 MS.gene038257:CDS
ATCACGGTTGATTAGAAGTT+TGG 0.300557 5.4:-71540300 None:intergenic
ACTTCCAGTGTTGCTTTCCT+TGG 0.331322 5.4:+71540638 MS.gene038257:CDS
ACTCAAGGGTGGAAACTAAA+TGG 0.332484 5.4:-71540274 None:intergenic
GAGTAAGAAGACTTTGTTAG+AGG 0.346933 5.4:+71541573 MS.gene038257:CDS
ACAAGATTGAGAAAGGAATA+AGG 0.346991 5.4:+71541494 MS.gene038257:CDS
TGAGTTTGAAGGAAACAAAT+TGG 0.353873 5.4:-71540747 None:intergenic
AGGAAACTGGATTAGTGTTT+GGG 0.354445 5.4:-71540448 None:intergenic
TGATGACTAAAACAGTTATT+CGG 0.369061 5.4:-71540331 None:intergenic
GAGGAAACTGGATTAGTGTT+TGG 0.371137 5.4:-71540449 None:intergenic
CAAATTGGCGAAAGTCGATA+TGG 0.375205 5.4:-71540732 None:intergenic
GCCGTATCTAACCTCATTAC+TGG 0.383625 5.4:+71540515 MS.gene038257:CDS
GTACGATCTAAGAATCCTTC+AGG 0.396789 5.4:-71541208 None:intergenic
TCCGAAGTTAAAAGATAGTT+AGG 0.397212 5.4:-71541472 None:intergenic
CGTTTGGTTTCTGAGCTTCA+AGG 0.407371 5.4:-71540484 None:intergenic
GGAGATTGCACTAGATTATA+GGG 0.408029 5.4:+71541432 MS.gene038257:CDS
AACCTGCACCGAAGGGTGCC+AGG 0.409570 5.4:+71541140 MS.gene038257:CDS
TTAGATCGTACGGCAGAGAT+TGG 0.409709 5.4:+71541220 MS.gene038257:CDS
TGGATAAGGATGGAGAGTTC+AGG 0.411408 5.4:+71541524 MS.gene038257:CDS
GCCCTGGCACCCTTCGGTGC+AGG 0.413118 5.4:-71541142 None:intergenic
TGAGCGGACATGGAGGAAAC+TGG 0.416392 5.4:-71540461 None:intergenic
GATACGGCTTGTTTGACGTT+TGG 0.420004 5.4:-71540500 None:intergenic
ATAGTAAGGCCTACTTCATA+TGG 0.420521 5.4:+71541107 MS.gene038257:CDS
ATTCCCATTCCTTGCTTAGC+AGG 0.429956 5.4:-71540781 None:intergenic
CGCTTTCTTCTCCAGTAATG+AGG 0.437163 5.4:-71540526 None:intergenic
TATCCGGTAGGACCCATATT+AGG 0.438415 5.4:+71540935 MS.gene038257:CDS
TTTATCCCTTCTCCTGGTGT+TGG 0.439627 5.4:+71540251 MS.gene038257:CDS
GTTGATGACGCGGAGTGAAT+CGG 0.443171 5.4:-71540405 None:intergenic
AGCTTCAAGGTGAGCGGACA+TGG 0.443539 5.4:-71540471 None:intergenic
AATAAGGAGTGTGTTGGATA+AGG 0.445356 5.4:+71541510 MS.gene038257:CDS
ACTTCGGACAAGATTGAGAA+AGG 0.447026 5.4:+71541487 MS.gene038257:CDS
TGTAGGGATGGAGAACTCTT+TGG 0.448555 5.4:-71540603 None:intergenic
GGTCCTACCGGATATATAAT+CGG 0.458016 5.4:-71540926 None:intergenic
GGTGCAGCCCTGGCACCCTT+CGG 0.458859 5.4:-71541148 None:intergenic
TTGGGCTCAGGACCTAATAT+GGG 0.459918 5.4:-71540947 None:intergenic
AGGAGTGTGTTGGATAAGGA+TGG 0.460546 5.4:+71541514 MS.gene038257:CDS
AAGTTTACCGATTATATATC+CGG 0.460905 5.4:+71540919 MS.gene038257:CDS
ACGCGGAGTGAATCGGAGAT+TGG 0.463729 5.4:-71540398 None:intergenic
GAAGAAGACGAGTGTAGGGA+TGG 0.467348 5.4:-71540615 None:intergenic
CCCAAAACCAAGGACATTGT+TGG 0.473013 5.4:+71540965 MS.gene038257:CDS
ATCAGAACCAACAATGTCCT+TGG 0.474274 5.4:-71540972 None:intergenic
CTCTTTGGCAACATCAATCA+TGG 0.482802 5.4:-71540588 None:intergenic
GTGGTGTTTATCCCTTCTCC+TGG 0.491408 5.4:+71540245 MS.gene038257:CDS
AACATCAATCATGGCTGTGC+AGG 0.498010 5.4:-71540579 None:intergenic
TTCCCTGCTAAGCAAGGAAT+GGG 0.502187 5.4:+71540778 MS.gene038257:CDS
TCCAGTAATGAGGTTAGATA+CGG 0.506335 5.4:-71540516 None:intergenic
GTAATCAGAAGGTGCAGCCC+TGG 0.512339 5.4:-71541158 None:intergenic
AACCTTTGCTTCCGAAGCAA+AGG 0.512653 5.4:-71541039 None:intergenic
ATCGTACGGCAGAGATTGGA+AGG 0.512730 5.4:+71541224 MS.gene038257:CDS
CAAACCAAGGAAAGCAACAC+TGG 0.514093 5.4:-71540642 None:intergenic
TGAATTTACTATGATTCCAT+CGG 0.518984 5.4:-71540840 None:intergenic
TTCCTTTGCTTCGGAAGCAA+AGG 0.519053 5.4:+71541037 MS.gene038257:CDS
TTCCCATTCCTTGCTTAGCA+GGG 0.519847 5.4:-71540780 None:intergenic
AGTAAGAAGACTTTGTTAGA+GGG 0.524588 5.4:+71541574 MS.gene038257:CDS
GGAGTGAATCGGAGATTGGA+AGG 0.526271 5.4:-71540394 None:intergenic
GAAGTGAAGAAGACGAGTGT+AGG 0.527981 5.4:-71540620 None:intergenic
GCTAAGCAAGGAATGGGAAT+CGG 0.533095 5.4:+71540784 MS.gene038257:CDS
GGACAATTTAATTTGATACC+TGG 0.537015 5.4:-71541645 None:intergenic
AATTGATTATATTATGAACC+AGG 0.537333 5.4:+71541627 MS.gene038257:CDS
TCTCCGTAAACCTGCACCGA+AGG 0.539263 5.4:+71541132 MS.gene038257:CDS
ATATGCTATTGAGAATAGTA+AGG 0.539921 5.4:+71541093 MS.gene038257:CDS
AAGTGAAGAAGACGAGTGTA+GGG 0.541815 5.4:-71540619 None:intergenic
GTTCCCTGCTAAGCAAGGAA+TGG 0.542227 5.4:+71540777 MS.gene038257:CDS
TTAGAAGTTTGGCGAACTCA+AGG 0.542612 5.4:-71540289 None:intergenic
TAATTCAGGATGAGAGAAAG+AGG 0.542857 5.4:-71540894 None:intergenic
GAACGAGGCAATGAGTTTGA+AGG 0.546536 5.4:-71540758 None:intergenic
TGATGATCAACCTCTTTCCT+CGG 0.551057 5.4:+71541009 MS.gene038257:CDS
CAACATGAAGAAAGCAGAAG+TGG 0.551751 5.4:+71540226 None:intergenic
ACCTGCACCGAAGGGTGCCA+GGG 0.557282 5.4:+71541141 MS.gene038257:CDS
TGATTCCATCGGCATTCTTG+AGG 0.557895 5.4:-71540829 None:intergenic
GAAAGGAATAAGGAGTGTGT+TGG 0.560047 5.4:+71541504 MS.gene038257:CDS
TATAGGGTGGAGTATAGTAG+TGG 0.560919 5.4:+71541448 MS.gene038257:CDS
TTATTCGGAGACGGCTATCA+CGG 0.561361 5.4:-71540316 None:intergenic
TGAAGGATTCTTAGATCGTA+CGG 0.567665 5.4:+71541210 MS.gene038257:CDS
GCCTCGTTCCCTGCTAAGCA+AGG 0.568976 5.4:+71540772 MS.gene038257:CDS
AGTGTATACATCAATTTCAG+TGG 0.569138 5.4:-71540366 None:intergenic
AAATGGCCAACACCAGGAGA+AGG 0.569712 5.4:-71540257 None:intergenic
AAGAAGACTTTGTTAGAGGG+AGG 0.577907 5.4:+71541577 MS.gene038257:CDS
CATCAATTTCAGTGGCGTGT+GGG 0.579168 5.4:-71540358 None:intergenic
ACATCAATTTCAGTGGCGTG+TGG 0.581929 5.4:-71540359 None:intergenic
AGGAAAACTACCGAGGAAAG+AGG 0.586295 5.4:-71541019 None:intergenic
GGACCTAATATGGGTCCTAC+CGG 0.589824 5.4:-71540938 None:intergenic
TAGAAGTTTGGCGAACTCAA+GGG 0.591389 5.4:-71540288 None:intergenic
ACGGAGAGACCATATGAAGT+AGG 0.597806 5.4:-71541116 None:intergenic
TCAGAAAGAGTGTAATCAGA+AGG 0.599938 5.4:-71541169 None:intergenic
AGAGGCCTCAAGAATGCCGA+TGG 0.601382 5.4:+71540824 MS.gene038257:CDS
CTCCGTAAACCTGCACCGAA+GGG 0.601925 5.4:+71541133 MS.gene038257:CDS
GAAACTAAATGGCCAACACC+AGG 0.609913 5.4:-71540263 None:intergenic
ATAGGGTGGAGTATAGTAGT+GGG 0.611371 5.4:+71541449 MS.gene038257:CDS
CTAAAACAGTTATTCGGAGA+CGG 0.612457 5.4:-71540325 None:intergenic
AAGTTTGGCGAACTCAAGGG+TGG 0.616623 5.4:-71540285 None:intergenic
AATGGCCAACACCAGGAGAA+GGG 0.617006 5.4:-71540256 None:intergenic
TTTCTGAGCTTCAAGGTGAG+CGG 0.618759 5.4:-71540477 None:intergenic
CTCATTACTGGAGAAGAAAG+CGG 0.621210 5.4:+71540527 MS.gene038257:CDS
TCCTTGCTTAGCAGGGAACG+AGG 0.628004 5.4:-71540773 None:intergenic
TTGGTTCTGATATCATCAAG+TGG 0.633590 5.4:+71540984 MS.gene038257:CDS
GAGTGAATCGGAGATTGGAA+GGG 0.633657 5.4:-71540393 None:intergenic
GGGGAAGAGAGCATTCTGGA+AGG 0.637308 5.4:-71540427 None:intergenic
TTACCGATTATATATCCGGT+AGG 0.641951 5.4:+71540923 MS.gene038257:CDS
GGAAACTGGATTAGTGTTTG+GGG 0.647513 5.4:-71540447 None:intergenic
AGGTCCTGAGCCCAAAACCA+AGG 0.674042 5.4:+71540955 MS.gene038257:CDS
GAAGATAAAGAGTCAAACCA+AGG 0.675239 5.4:-71540655 None:intergenic
TGTCAACAACGAAAGCAGCA+AGG 0.677958 5.4:-71540553 None:intergenic
GTGTGAGCTGAAGATTGCTG+TGG 0.687080 5.4:+71541411 MS.gene038257:CDS
GAAACTGGATTAGTGTTTGG+GGG 0.689284 5.4:-71540446 None:intergenic
TCGTACGGCAGAGATTGGAA+GGG 0.696478 5.4:+71541225 MS.gene038257:CDS
GATTGCACTAGATTATAGGG+TGG 0.701243 5.4:+71541435 MS.gene038257:CDS
TGAAGATCTAGAATCACATG+CGG 0.703019 5.4:+71540865 MS.gene038257:CDS
TTCAAGGTGAGCGGACATGG+AGG 0.708771 5.4:-71540468 None:intergenic
GAAGCAAAGGAAAACTACCG+AGG 0.708832 5.4:-71541026 None:intergenic
ATTCTGGAAGGTTGATGACG+CGG 0.709338 5.4:-71540415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACGACCTAAATAAT+TGG - chr5.4:71541611-71541630 None:intergenic 20.0%
!! AATTGATTATATTATGAACC+AGG + chr5.4:71541627-71541646 MS.gene038257:CDS 20.0%
! ATATGCTATTGAGAATAGTA+AGG + chr5.4:71541093-71541112 MS.gene038257:CDS 25.0%
! TGAATTTACTATGATTCCAT+CGG - chr5.4:71540843-71540862 None:intergenic 25.0%
! TGATGACTAAAACAGTTATT+CGG - chr5.4:71540334-71540353 None:intergenic 25.0%
!! AAGTTTACCGATTATATATC+CGG + chr5.4:71540919-71540938 MS.gene038257:CDS 25.0%
ACAAGATTGAGAAAGGAATA+AGG + chr5.4:71541494-71541513 MS.gene038257:CDS 30.0%
AGTAAGAAGACTTTGTTAGA+GGG + chr5.4:71541574-71541593 MS.gene038257:CDS 30.0%
AGTGTATACATCAATTTCAG+TGG - chr5.4:71540369-71540388 None:intergenic 30.0%
GGATCTTCTTCCAATTATTT+AGG + chr5.4:71541598-71541617 MS.gene038257:CDS 30.0%
TCCGAAGTTAAAAGATAGTT+AGG - chr5.4:71541475-71541494 None:intergenic 30.0%
TGAGTTTGAAGGAAACAAAT+TGG - chr5.4:71540750-71540769 None:intergenic 30.0%
!! ATCGGTAAACTTGTTAATTC+AGG - chr5.4:71540911-71540930 None:intergenic 30.0%
!!! GCCTAACTATCTTTTAACTT+CGG + chr5.4:71541471-71541490 MS.gene038257:CDS 30.0%
ATAGTAAGGCCTACTTCATA+TGG + chr5.4:71541107-71541126 MS.gene038257:CDS 35.0%
ATCACGGTTGATTAGAAGTT+TGG - chr5.4:71540303-71540322 None:intergenic 35.0%
CTAAAACAGTTATTCGGAGA+CGG - chr5.4:71540328-71540347 None:intergenic 35.0%
GAAGATAAAGAGTCAAACCA+AGG - chr5.4:71540658-71540677 None:intergenic 35.0%
GAGTAAGAAGACTTTGTTAG+AGG + chr5.4:71541573-71541592 MS.gene038257:CDS 35.0%
GGAGATTGCACTAGATTATA+GGG + chr5.4:71541432-71541451 MS.gene038257:CDS 35.0%
TAATTCAGGATGAGAGAAAG+AGG - chr5.4:71540897-71540916 None:intergenic 35.0%
TCCAGTAATGAGGTTAGATA+CGG - chr5.4:71540519-71540538 None:intergenic 35.0%
TGAAGGATTCTTAGATCGTA+CGG + chr5.4:71541210-71541229 MS.gene038257:CDS 35.0%
TGGAGATTGCACTAGATTAT+AGG + chr5.4:71541431-71541450 MS.gene038257:CDS 35.0%
! AATAAGGAGTGTGTTGGATA+AGG + chr5.4:71541510-71541529 MS.gene038257:CDS 35.0%
! GATTTGTTTCACATTGTGGT+TGG + chr5.4:71541299-71541318 MS.gene038257:intron 35.0%
! TCAGAAAGAGTGTAATCAGA+AGG - chr5.4:71541172-71541191 None:intergenic 35.0%
! TGAAGATCTAGAATCACATG+CGG + chr5.4:71540865-71540884 MS.gene038257:CDS 35.0%
! TTACCGATTATATATCCGGT+AGG + chr5.4:71540923-71540942 MS.gene038257:CDS 35.0%
! TTGTGTTCGATTTTACCTGA+AGG + chr5.4:71541193-71541212 MS.gene038257:CDS 35.0%
! TTTTGATGAGGATCAGGTTA+AGG + chr5.4:71541063-71541082 MS.gene038257:CDS 35.0%
!! AGGAAACTGGATTAGTGTTT+GGG - chr5.4:71540451-71540470 None:intergenic 35.0%
!! TTGGTTCTGATATCATCAAG+TGG + chr5.4:71540984-71541003 MS.gene038257:CDS 35.0%
!!! AAGCAAAGGTTGTTTTGATG+AGG + chr5.4:71541051-71541070 MS.gene038257:CDS 35.0%
AAGAAGACTTTGTTAGAGGG+AGG + chr5.4:71541577-71541596 MS.gene038257:CDS 40.0%
AAGTGAAGAAGACGAGTGTA+GGG - chr5.4:71540622-71540641 None:intergenic 40.0%
ACTCAAGGGTGGAAACTAAA+TGG - chr5.4:71540277-71540296 None:intergenic 40.0%
ACTTCGGACAAGATTGAGAA+AGG + chr5.4:71541487-71541506 MS.gene038257:CDS 40.0%
ATAGGGTGGAGTATAGTAGT+GGG + chr5.4:71541449-71541468 MS.gene038257:CDS 40.0%
ATCAGAACCAACAATGTCCT+TGG - chr5.4:71540975-71540994 None:intergenic 40.0%
ATGTGAAACAAATCCTCCTG+TGG - chr5.4:71541293-71541312 None:intergenic 40.0%
CAAATTGGCGAAAGTCGATA+TGG - chr5.4:71540735-71540754 None:intergenic 40.0%
CTCATTACTGGAGAAGAAAG+CGG + chr5.4:71540527-71540546 MS.gene038257:CDS 40.0%
CTCTTTGGCAACATCAATCA+TGG - chr5.4:71540591-71540610 None:intergenic 40.0%
GATTGCACTAGATTATAGGG+TGG + chr5.4:71541435-71541454 MS.gene038257:CDS 40.0%
GGTCCTACCGGATATATAAT+CGG - chr5.4:71540929-71540948 None:intergenic 40.0%
GTACGATCTAAGAATCCTTC+AGG - chr5.4:71541211-71541230 None:intergenic 40.0%
TAGAAGTTTGGCGAACTCAA+GGG - chr5.4:71540291-71540310 None:intergenic 40.0%
TATAGGGTGGAGTATAGTAG+TGG + chr5.4:71541448-71541467 MS.gene038257:CDS 40.0%
TGATGATCAACCTCTTTCCT+CGG + chr5.4:71541009-71541028 MS.gene038257:CDS 40.0%
TTAGAAGTTTGGCGAACTCA+AGG - chr5.4:71540292-71540311 None:intergenic 40.0%
! ACCAACAATGTCCTTGGTTT+TGG - chr5.4:71540969-71540988 None:intergenic 40.0%
! GAAAGGAATAAGGAGTGTGT+TGG + chr5.4:71541504-71541523 MS.gene038257:CDS 40.0%
! GGAGGATTTGTTTCACATTG+TGG + chr5.4:71541295-71541314 MS.gene038257:intron 40.0%
! TCGGTAGTTTTCCTTTGCTT+CGG + chr5.4:71541028-71541047 MS.gene038257:CDS 40.0%
! TGGGATAGTATTTGGGTTTG+TGG - chr5.4:71541265-71541284 None:intergenic 40.0%
!! CCAACAATGTCCTTGGTTTT+GGG - chr5.4:71540968-71540987 None:intergenic 40.0%
!! GAAACTGGATTAGTGTTTGG+GGG - chr5.4:71540449-71540468 None:intergenic 40.0%
!! GAGGAAACTGGATTAGTGTT+TGG - chr5.4:71540452-71540471 None:intergenic 40.0%
!! GCAGGTTACTGCTTTTGAAT+TGG + chr5.4:71541387-71541406 MS.gene038257:intron 40.0%
!! GGAAACTGGATTAGTGTTTG+GGG - chr5.4:71540450-71540469 None:intergenic 40.0%
!! GTTTTCAAGAGCTATGCAAG+AGG + chr5.4:71540806-71540825 MS.gene038257:CDS 40.0%
!!! AGGTTGTTTTGATGAGGATC+AGG + chr5.4:71541057-71541076 MS.gene038257:CDS 40.0%
AAAGAGTGGCCATGTTGCAA+TGG - chr5.4:71541359-71541378 None:intergenic 45.0%
AAAGTATACGCTCTCGAGTG+TGG - chr5.4:71541329-71541348 None:intergenic 45.0%
AACATCAATCATGGCTGTGC+AGG - chr5.4:71540582-71540601 None:intergenic 45.0%
AACCTTTGCTTCCGAAGCAA+AGG - chr5.4:71541042-71541061 None:intergenic 45.0%
AAGAGTGGCCATGTTGCAAT+GGG - chr5.4:71541358-71541377 None:intergenic 45.0%
ACATCAATTTCAGTGGCGTG+TGG - chr5.4:71540362-71540381 None:intergenic 45.0%
ACGGAGAGACCATATGAAGT+AGG - chr5.4:71541119-71541138 None:intergenic 45.0%
AGATTGGAAGGGTGATTGGT+TGG + chr5.4:71541236-71541255 MS.gene038257:intron 45.0%
AGGAAAACTACCGAGGAAAG+AGG - chr5.4:71541022-71541041 None:intergenic 45.0%
ATTCCCATTCCTTGCTTAGC+AGG - chr5.4:71540784-71540803 None:intergenic 45.0%
CAAACCAAGGAAAGCAACAC+TGG - chr5.4:71540645-71540664 None:intergenic 45.0%
CATCAATTTCAGTGGCGTGT+GGG - chr5.4:71540361-71540380 None:intergenic 45.0%
CCCAAAACCAAGGACATTGT+TGG + chr5.4:71540965-71540984 MS.gene038257:CDS 45.0%
CGCTTTCTTCTCCAGTAATG+AGG - chr5.4:71540529-71540548 None:intergenic 45.0%
GAAACTAAATGGCCAACACC+AGG - chr5.4:71540266-71540285 None:intergenic 45.0%
GAACGAGGCAATGAGTTTGA+AGG - chr5.4:71540761-71540780 None:intergenic 45.0%
GAAGCAAAGGAAAACTACCG+AGG - chr5.4:71541029-71541048 None:intergenic 45.0%
GAAGTGAAGAAGACGAGTGT+AGG - chr5.4:71540623-71540642 None:intergenic 45.0%
GAGTGAATCGGAGATTGGAA+GGG - chr5.4:71540396-71540415 None:intergenic 45.0%
GCCGTATCTAACCTCATTAC+TGG + chr5.4:71540515-71540534 MS.gene038257:CDS 45.0%
GCTAAGCAAGGAATGGGAAT+CGG + chr5.4:71540784-71540803 MS.gene038257:CDS 45.0%
GGCTGGATGGGATAGTATTT+GGG - chr5.4:71541272-71541291 None:intergenic 45.0%
TATCCGGTAGGACCCATATT+AGG + chr5.4:71540935-71540954 MS.gene038257:CDS 45.0%
TGATTCCATCGGCATTCTTG+AGG - chr5.4:71540832-71540851 None:intergenic 45.0%
TGGATAAGGATGGAGAGTTC+AGG + chr5.4:71541524-71541543 MS.gene038257:CDS 45.0%
TGGCTGGATGGGATAGTATT+TGG - chr5.4:71541273-71541292 None:intergenic 45.0%
TGTAGGGATGGAGAACTCTT+TGG - chr5.4:71540606-71540625 None:intergenic 45.0%
TGTCAACAACGAAAGCAGCA+AGG - chr5.4:71540556-71540575 None:intergenic 45.0%
TTAGATCGTACGGCAGAGAT+TGG + chr5.4:71541220-71541239 MS.gene038257:CDS 45.0%
TTATTCGGAGACGGCTATCA+CGG - chr5.4:71540319-71540338 None:intergenic 45.0%
TTCCCATTCCTTGCTTAGCA+GGG - chr5.4:71540783-71540802 None:intergenic 45.0%
TTCCCTGCTAAGCAAGGAAT+GGG + chr5.4:71540778-71540797 MS.gene038257:CDS 45.0%
TTCCTTTGCTTCGGAAGCAA+AGG + chr5.4:71541037-71541056 MS.gene038257:CDS 45.0%
TTGGGCTCAGGACCTAATAT+GGG - chr5.4:71540950-71540969 None:intergenic 45.0%
TTTATCCCTTCTCCTGGTGT+TGG + chr5.4:71540251-71540270 MS.gene038257:CDS 45.0%
TTTCTGAGCTTCAAGGTGAG+CGG - chr5.4:71540480-71540499 None:intergenic 45.0%
TTTGGGCTCAGGACCTAATA+TGG - chr5.4:71540951-71540970 None:intergenic 45.0%
! ACACTCGAGAGCGTATACTT+TGG + chr5.4:71541328-71541347 MS.gene038257:intron 45.0%
! AGGAGTGTGTTGGATAAGGA+TGG + chr5.4:71541514-71541533 MS.gene038257:CDS 45.0%
! CGTTTGGTTTCTGAGCTTCA+AGG - chr5.4:71540487-71540506 None:intergenic 45.0%
! GATACGGCTTGTTTGACGTT+TGG - chr5.4:71540503-71540522 None:intergenic 45.0%
! GATTGGAAGGGTGATTGGTT+GGG + chr5.4:71541237-71541256 MS.gene038257:intron 45.0%
!! ACTTCCAGTGTTGCTTTCCT+TGG + chr5.4:71540638-71540657 MS.gene038257:CDS 45.0%
!! ATTCTGGAAGGTTGATGACG+CGG - chr5.4:71540418-71540437 None:intergenic 45.0%
AAATCCTCCTGTGGCTGGAT+GGG - chr5.4:71541284-71541303 None:intergenic 50.0%
AAATGGCCAACACCAGGAGA+AGG - chr5.4:71540260-71540279 None:intergenic 50.0%
AAGTTTGGCGAACTCAAGGG+TGG - chr5.4:71540288-71540307 None:intergenic 50.0%
AATGGCCAACACCAGGAGAA+GGG - chr5.4:71540259-71540278 None:intergenic 50.0%
ACCTGCTGTTCAGCAAAGAG+TGG - chr5.4:71541373-71541392 None:intergenic 50.0%
ATACTATCCCATCCAGCCAC+AGG + chr5.4:71541274-71541293 MS.gene038257:intron 50.0%
ATCGTACGGCAGAGATTGGA+AGG + chr5.4:71541224-71541243 MS.gene038257:CDS 50.0%
GAAACAAATCCTCCTGTGGC+TGG - chr5.4:71541289-71541308 None:intergenic 50.0%
GAAGAAGACGAGTGTAGGGA+TGG - chr5.4:71540618-71540637 None:intergenic 50.0%
GCAGAGATTGGAAGGGTGAT+TGG + chr5.4:71541232-71541251 MS.gene038257:intron 50.0%
GGACCTAATATGGGTCCTAC+CGG - chr5.4:71540941-71540960 None:intergenic 50.0%
GGAGTGAATCGGAGATTGGA+AGG - chr5.4:71540397-71540416 None:intergenic 50.0%
GTGGTGTTTATCCCTTCTCC+TGG + chr5.4:71540245-71540264 MS.gene038257:CDS 50.0%
GTGTGAGCTGAAGATTGCTG+TGG + chr5.4:71541411-71541430 MS.gene038257:CDS 50.0%
GTTCCCTGCTAAGCAAGGAA+TGG + chr5.4:71540777-71540796 MS.gene038257:CDS 50.0%
TCGTACGGCAGAGATTGGAA+GGG + chr5.4:71541225-71541244 MS.gene038257:CDS 50.0%
TTGGTGTGCCCATTGCAACA+TGG + chr5.4:71541347-71541366 MS.gene038257:intron 50.0%
!! GTTGATGACGCGGAGTGAAT+CGG - chr5.4:71540408-71540427 None:intergenic 50.0%
!! TTTGGGGGAAGAGAGCATTC+TGG - chr5.4:71540434-71540453 None:intergenic 50.0%
!!! ATGTCCTTGGTTTTGGGCTC+AGG - chr5.4:71540962-71540981 None:intergenic 50.0%
ACGCGGAGTGAATCGGAGAT+TGG - chr5.4:71540401-71540420 None:intergenic 55.0%
AGAGGCCTCAAGAATGCCGA+TGG + chr5.4:71540824-71540843 MS.gene038257:CDS 55.0%
AGCTTCAAGGTGAGCGGACA+TGG - chr5.4:71540474-71540493 None:intergenic 55.0%
AGGTCCTGAGCCCAAAACCA+AGG + chr5.4:71540955-71540974 MS.gene038257:CDS 55.0%
CAAATCCTCCTGTGGCTGGA+TGG - chr5.4:71541285-71541304 None:intergenic 55.0%
CTCCGTAAACCTGCACCGAA+GGG + chr5.4:71541133-71541152 MS.gene038257:CDS 55.0%
GCCACTCTTTGCTGAACAGC+AGG + chr5.4:71541369-71541388 MS.gene038257:intron 55.0%
TCCTTGCTTAGCAGGGAACG+AGG - chr5.4:71540776-71540795 None:intergenic 55.0%
TCTCCGTAAACCTGCACCGA+AGG + chr5.4:71541132-71541151 MS.gene038257:CDS 55.0%
TGAGCGGACATGGAGGAAAC+TGG - chr5.4:71540464-71540483 None:intergenic 55.0%
TTCAAGGTGAGCGGACATGG+AGG - chr5.4:71540471-71540490 None:intergenic 55.0%
! CACCCTTCGGTGCAGGTTTA+CGG - chr5.4:71541138-71541157 None:intergenic 55.0%
! GTAATCAGAAGGTGCAGCCC+TGG - chr5.4:71541161-71541180 None:intergenic 55.0%
!! GGGGAAGAGAGCATTCTGGA+AGG - chr5.4:71540430-71540449 None:intergenic 55.0%
CTATCCCATCCAGCCACAGG+AGG + chr5.4:71541277-71541296 MS.gene038257:intron 60.0%
GCCTCGTTCCCTGCTAAGCA+AGG + chr5.4:71540772-71540791 MS.gene038257:CDS 60.0%
!! AACCTGCACCGAAGGGTGCC+AGG + chr5.4:71541140-71541159 MS.gene038257:CDS 65.0%
!! ACCTGCACCGAAGGGTGCCA+GGG + chr5.4:71541141-71541160 MS.gene038257:CDS 65.0%
GGTGCAGCCCTGGCACCCTT+CGG - chr5.4:71541151-71541170 None:intergenic 70.0%
! GCCCTGGCACCCTTCGGTGC+AGG - chr5.4:71541145-71541164 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 71540230 71541660 71540230 ID=MS.gene038257
chr5.4 mRNA 71540230 71541660 71540230 ID=MS.gene038257.t1;Parent=MS.gene038257
chr5.4 exon 71540230 71541246 71540230 ID=MS.gene038257.t1.exon1;Parent=MS.gene038257.t1
chr5.4 CDS 71540230 71541246 71540230 ID=cds.MS.gene038257.t1;Parent=MS.gene038257.t1
chr5.4 exon 71541391 71541660 71541391 ID=MS.gene038257.t1.exon2;Parent=MS.gene038257.t1
chr5.4 CDS 71541391 71541660 71541391 ID=cds.MS.gene038257.t1;Parent=MS.gene038257.t1
Gene Sequence

>MS.gene038257

ATGAAGAAAGCAGAAGTGGTGTTTATCCCTTCTCCTGGTGTTGGCCATTTAGTTTCCACCCTTGAGTTCGCCAAACTTCTAATCAACCGTGATAGCCGTCTCCGAATAACTGTTTTAGTCATCAAATTCCCACACGCCACTGAAATTGATGTATACACTAAATCCCTTCCAATCTCCGATTCACTCCGCGTCATCAACCTTCCAGAATGCTCTCTTCCCCCAAACACTAATCCAGTTTCCTCCATGTCCGCTCACCTTGAAGCTCAGAAACCAAACGTCAAACAAGCCGTATCTAACCTCATTACTGGAGAAGAAAGCGGAATCCTTGCTGCTTTCGTTGTTGACATGTCCTGCACAGCCATGATTGATGTTGCCAAAGAGTTCTCCATCCCTACACTCGTCTTCTTCACTTCCAGTGTTGCTTTCCTTGGTTTGACTCTTTATCTTCACAATCTGTTTGAACAAATAGATTCAACTCAGTTGCTGCAGCAGAACGAGTTAGCCATATCGACTTTCGCCAATTTGTTTCCTTCAAACTCATTGCCTCGTTCCCTGCTAAGCAAGGAATGGGAATCGGTTTTCAAGAGCTATGCAAGAGGCCTCAAGAATGCCGATGGAATCATAGTAAATTCATTTGAAGATCTAGAATCACATGCGGTTCAGTCCTCTTTCTCTCATCCTGAATTAACAAGTTTACCGATTATATATCCGGTAGGACCCATATTAGGTCCTGAGCCCAAAACCAAGGACATTGTTGGTTCTGATATCATCAAGTGGCTTGATGATCAACCTCTTTCCTCGGTAGTTTTCCTTTGCTTCGGAAGCAAAGGTTGTTTTGATGAGGATCAGGTTAAGGAGATCGCATATGCTATTGAGAATAGTAAGGCCTACTTCATATGGTCTCTCCGTAAACCTGCACCGAAGGGTGCCAGGGCTGCACCTTCTGATTACACTCTTTCTGATTTGTGTTCGATTTTACCTGAAGGATTCTTAGATCGTACGGCAGAGATTGGAAGGGTGATTGGTTGGGCTCCACAAACCCAAATACTATCCCATCCAGCCACAGGAGGATTTGTTTCACATTGTGGTTGGAATTCCACACTCGAGAGCGTATACTTTGGTGTGCCCATTGCAACATGGCCACTCTTTGCTGAACAGCAGGTTACTGCTTTTGAATTGGTGTGTGAGCTGAAGATTGCTGTGGAGATTGCACTAGATTATAGGGTGGAGTATAGTAGTGGGCCTAACTATCTTTTAACTTCGGACAAGATTGAGAAAGGAATAAGGAGTGTGTTGGATAAGGATGGAGAGTTCAGGAAAAAAGTGAAAGAGATGAGTGAAAAGAGTAAGAAGACTTTGTTAGAGGGAGGATCTTCTTCCAATTATTTAGGTCGTTTAATTGATTATATTATGAACCAGGTATCAAATTAA
Protein sequence

>MS.gene038257.t1

MKKAEVVFIPSPGVGHLVSTLEFAKLLINRDSRLRITVLVIKFPHATEIDVYTKSLPISDSLRVINLPECSLPPNTNPVSSMSAHLEAQKPNVKQAVSNLITGEESGILAAFVVDMSCTAMIDVAKEFSIPTLVFFTSSVAFLGLTLYLHNLFEQIDSTQLLQQNELAISTFANLFPSNSLPRSLLSKEWESVFKSYARGLKNADGIIVNSFEDLESHAVQSSFSHPELTSLPIIYPVGPILGPEPKTKDIVGSDIIKWLDDQPLSSVVFLCFGSKGCFDEDQVKEIAYAIENSKAYFIWSLRKPAPKGARAAPSDYTLSDLCSILPEGFLDRTAEIGRVTAFELVCELKIAVEIALDYRVEYSSGPNYLLTSDKIEKGIRSVLDKDGEFRKKVKEMSEKSKKTLLEGGSSSNYLGRLIDYIMNQVSN