AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47727

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47727.t1 MTR_5g090670 88.788 330 36 1 1 329 1 330 0.0 602
MS.gene47727.t1 MTR_5g090670 80.263 76 15 0 327 402 405 480 2.55e-31 124
MS.gene47727.t1 MTR_5g090600 63.011 465 105 7 1 404 1 459 0.0 548
MS.gene47727.t1 MTR_5g090700 80.303 330 60 3 1 327 1 328 0.0 541
MS.gene47727.t1 MTR_5g090700 78.205 78 17 0 327 404 405 482 1.11e-31 125
MS.gene47727.t1 MTR_5g090580 76.292 329 73 3 1 327 1 326 2.55e-175 498
MS.gene47727.t1 MTR_5g090580 73.684 76 20 0 327 402 403 478 8.30e-28 114
MS.gene47727.t1 MTR_5g090660 74.085 328 82 2 1 328 1 325 6.42e-173 495
MS.gene47727.t1 MTR_5g090660 79.221 77 16 0 327 403 401 477 8.23e-32 127
MS.gene47727.t1 MTR_5g090620 73.414 331 84 3 1 329 1 329 4.52e-171 487
MS.gene47727.t1 MTR_5g090620 73.684 76 20 0 327 402 404 479 3.23e-30 121
MS.gene47727.t1 MTR_5g090610 74.618 327 68 3 1 327 1 312 4.06e-170 484
MS.gene47727.t1 MTR_5g090610 77.922 77 17 0 327 403 389 465 2.71e-31 124
MS.gene47727.t1 MTR_5g090630 73.476 328 77 2 1 328 1 318 1.76e-166 475
MS.gene47727.t1 MTR_5g090630 80.263 76 15 0 327 402 394 469 3.03e-32 127
MS.gene47727.t1 MTR_5g090690 67.374 377 40 2 69 392 28 374 3.57e-158 451
MS.gene47727.t1 MTR_5g098930 64.438 329 105 5 1 327 1 319 1.82e-142 414
MS.gene47727.t1 MTR_5g098930 68.421 76 24 0 327 402 396 471 4.28e-26 109
MS.gene47727.t1 MTR_5g090650 64.526 327 82 4 1 327 1 293 2.02e-139 400
MS.gene47727.t1 MTR_5g070040 41.195 318 171 9 2 311 8 317 2.34e-69 226
MS.gene47727.t1 MTR_5g070090 40.064 312 173 8 2 306 8 312 3.19e-61 205
MS.gene47727.t1 MTR_2g046750 36.765 340 184 12 1 326 1 323 3.40e-55 189
MS.gene47727.t1 MTR_2g040530 37.798 336 185 10 1 326 1 322 9.38e-55 188
MS.gene47727.t1 MTR_2g046820 38.529 340 175 11 1 326 1 320 1.19e-54 187
MS.gene47727.t1 MTR_6g023665 32.000 325 196 10 2 317 10 318 3.73e-42 154
MS.gene47727.t1 MTR_3g009510 31.098 328 193 12 1 310 1 313 1.84e-40 150
MS.gene47727.t1 MTR_6g488280 31.790 324 196 9 3 317 4 311 4.43e-40 149
MS.gene47727.t1 MTR_0428s0010 31.790 324 196 9 3 317 4 311 4.43e-40 149
MS.gene47727.t1 MTR_7g117170 34.177 316 180 13 6 310 16 314 2.23e-37 141
MS.gene47727.t1 MTR_8g465670 31.348 319 191 10 2 310 4 304 5.08e-36 137
MS.gene47727.t1 MTR_8g027885 32.484 314 188 10 6 313 19 314 8.16e-36 137
MS.gene47727.t1 MTR_8g027870 32.399 321 179 11 6 313 19 314 1.21e-35 137
MS.gene47727.t1 MTR_8g006220 31.034 319 192 10 2 310 3 303 4.25e-35 135
MS.gene47727.t1 MTR_8g006730 27.586 319 206 10 2 310 3 306 1.70e-34 133
MS.gene47727.t1 MTR_8g006710 27.358 318 207 11 2 310 3 305 2.41e-32 127
MS.gene47727.t1 MTR_8g009055 26.984 315 212 9 2 310 3 305 1.04e-29 120
MS.gene47727.t1 MTR_0184s0040 28.707 317 205 9 2 310 18 321 2.66e-29 119
MS.gene47727.t1 MTR_0078s0190 28.707 317 205 9 2 310 18 321 2.66e-29 119
MS.gene47727.t1 MTR_6g033675 26.176 340 217 11 3 323 2 326 3.53e-29 119
MS.gene47727.t1 MTR_8g074550 27.358 318 206 10 2 308 5 308 4.66e-29 119
MS.gene47727.t1 MTR_0078s0010 26.349 315 215 8 2 310 3 306 8.10e-29 117
MS.gene47727.t1 MTR_8g009050 28.076 317 206 11 2 310 3 305 9.75e-29 117
MS.gene47727.t1 MTR_8g006270 28.797 316 202 10 2 310 3 302 1.47e-28 117
MS.gene47727.t1 MTR_5g019580 28.267 329 197 15 2 310 4 313 1.66e-28 117
MS.gene47727.t1 MTR_8g008990 27.937 315 209 9 2 310 3 305 2.02e-28 116
MS.gene47727.t1 MTR_8g009063 27.215 316 206 11 2 308 10 310 3.33e-28 115
MS.gene47727.t1 MTR_8g009073 28.395 324 196 11 2 310 3 305 3.45e-28 115
MS.gene47727.t1 MTR_7g047030 26.984 315 213 9 2 310 3 306 4.80e-28 115
MS.gene47727.t1 MTR_7g047270 26.984 315 213 9 2 310 3 306 4.80e-28 115
MS.gene47727.t1 MTR_8g008970 25.538 325 218 9 2 317 3 312 5.42e-27 114
MS.gene47727.t1 MTR_0078s0060 29.022 317 203 10 2 310 3 305 1.64e-26 111
MS.gene47727.t1 MTR_6g033615 26.582 316 202 7 3 308 2 297 4.13e-26 109
MS.gene47727.t1 MTR_6g078320 25.538 325 213 9 4 308 10 325 9.12e-26 108
MS.gene47727.t1 MTR_8g009067 26.935 323 202 11 2 310 3 305 2.03e-25 107
MS.gene47727.t1 MTR_8g077590 27.019 322 199 13 4 310 8 308 7.34e-25 106
MS.gene47727.t1 MTR_1g019510 25.776 322 219 9 2 317 3 310 8.02e-25 106
MS.gene47727.t1 MTR_6g033725 27.108 332 191 10 3 308 2 308 1.06e-24 105
MS.gene47727.t1 MTR_6g033660 25.705 319 208 8 6 308 5 310 1.91e-24 105
MS.gene47727.t1 MTR_0078s0200 27.358 318 209 10 2 310 3 307 3.27e-24 102
MS.gene47727.t1 MTR_0184s0030 28.213 319 205 12 2 310 3 307 1.02e-23 103
MS.gene47727.t1 MTR_8g012650 24.207 347 220 10 2 330 3 324 1.56e-23 102
MS.gene47727.t1 MTR_8g006260 26.347 334 208 12 3 318 4 317 7.47e-23 100
MS.gene47727.t1 MTR_5g019580 26.687 326 178 14 2 310 56 337 1.61e-22 99.8
MS.gene47727.t1 MTR_6g033625 27.778 324 202 11 3 308 2 311 1.66e-22 99.4
MS.gene47727.t1 MTR_7g046490 25.938 320 206 11 2 310 3 302 6.34e-22 97.8
MS.gene47727.t1 MTR_8g006230 27.615 239 161 7 75 310 18 247 6.90e-22 95.1
MS.gene47727.t1 MTR_3g009500 31.086 267 163 12 1 253 1 260 1.26e-21 94.0
MS.gene47727.t1 MTR_8g012635 25.779 353 218 15 2 337 3 328 3.08e-21 95.9
MS.gene47727.t1 MTR_8g012745 25.466 322 211 10 2 310 3 308 5.62e-21 95.1
MS.gene47727.t1 MTR_3g008010 26.627 338 203 11 3 308 8 332 5.86e-21 95.1
MS.gene47727.t1 MTR_4g082810 26.266 316 208 10 6 308 8 311 6.17e-21 94.4
MS.gene47727.t1 MTR_2g098430 25.393 382 219 18 2 356 3 345 8.14e-21 94.7
MS.gene47727.t1 MTR_4g082820 25.714 315 208 11 6 308 8 308 1.78e-20 93.6
MS.gene47727.t1 MTR_3g069710 24.893 466 262 18 2 400 9 453 3.48e-20 92.4
MS.gene47727.t1 MTR_8g066610 26.934 349 202 13 6 322 10 337 5.10e-20 92.0
MS.gene47727.t1 MTR_5g090680 97.619 42 1 0 1 42 1 42 6.09e-20 85.1
MS.gene47727.t1 MTR_5g464760 25.797 345 226 12 3 322 10 349 6.38e-20 92.0
MS.gene47727.t1 MTR_7g080900 23.197 319 216 9 2 308 9 310 1.14e-19 90.9
MS.gene47727.t1 MTR_6g014290 26.946 334 209 12 2 308 7 332 1.87e-19 90.5
MS.gene47727.t1 MTR_1g107360 22.661 481 263 15 5 401 9 464 2.75e-19 89.7
MS.gene47727.t1 MTR_1g107350 28.363 342 200 16 6 323 9 329 2.93e-19 89.7
MS.gene47727.t1 MTR_1g032490 26.113 337 195 12 6 313 11 322 3.89e-19 89.4
MS.gene47727.t1 MTR_6g005600 24.688 320 223 7 3 316 4 311 1.13e-18 88.2
MS.gene47727.t1 MTR_5g035580 24.845 322 198 10 6 309 14 309 1.41e-18 87.8
MS.gene47727.t1 MTR_1g107315 27.729 339 186 15 6 313 9 319 1.71e-18 87.4
MS.gene47727.t1 MTR_6g038240 24.367 316 211 9 6 309 12 311 2.60e-18 87.0
MS.gene47727.t1 MTR_0036s0220 25.915 328 210 10 6 308 13 332 3.78e-18 86.7
MS.gene47727.t1 MTR_3g009520 28.077 260 161 12 2 244 3 253 8.56e-18 83.2
MS.gene47727.t1 MTR_3g049970 27.273 330 199 14 6 313 10 320 1.35e-17 84.7
MS.gene47727.t1 MTR_8g064880 26.269 335 197 12 6 312 10 322 1.51e-17 84.7
MS.gene47727.t1 MTR_6g013440 27.434 339 203 14 2 308 8 335 1.87e-17 84.3
MS.gene47727.t1 MTR_3g069690 26.899 316 203 12 2 308 5 301 2.28e-17 84.0
MS.gene47727.t1 MTR_6g014186 23.009 452 278 16 2 399 4 439 2.72e-17 83.6
MS.gene47727.t1 MTR_7g080950 25.472 318 207 11 3 308 4 303 4.00e-17 83.2
MS.gene47727.t1 MTR_5g031840 24.118 340 204 12 1 308 1 318 6.37e-17 82.8
MS.gene47727.t1 MTR_6g013680 26.019 319 195 13 110 399 69 375 6.87e-17 82.0
MS.gene47727.t1 MTR_8g064870 27.854 219 126 8 110 311 117 320 6.94e-17 82.8
MS.gene47727.t1 MTR_8g009067 27.368 190 130 5 123 310 4 187 7.67e-17 81.6
MS.gene47727.t1 MTR_5g072810 24.516 310 216 9 4 308 11 307 1.07e-16 82.0
MS.gene47727.t1 MTR_3g479520 27.966 354 209 14 2 322 12 352 1.20e-16 82.0
MS.gene47727.t1 MTR_6g038200 23.053 321 213 10 4 309 10 311 1.45e-16 81.6
MS.gene47727.t1 MTR_0536s0020 24.924 329 203 12 2 314 15 315 3.12e-16 80.9
MS.gene47727.t1 MTR_5g464810 24.848 330 215 10 4 308 11 332 3.27e-16 80.5
MS.gene47727.t1 MTR_5g064240 24.848 330 215 10 4 308 11 332 3.27e-16 80.5
MS.gene47727.t1 MTR_5g035560 24.458 323 198 11 6 309 12 307 3.76e-16 80.5
MS.gene47727.t1 MTR_7g102460 25.075 335 205 15 3 309 7 323 5.00e-16 80.1
MS.gene47727.t1 MTR_6g014250 25.000 344 203 13 2 308 7 332 5.23e-16 80.1
MS.gene47727.t1 MTR_3g479490 25.915 328 219 10 2 308 3 327 5.99e-16 79.7
MS.gene47727.t1 MTR_1g107285 28.216 241 137 10 88 310 97 319 6.55e-16 79.7
MS.gene47727.t1 MTR_8g083290 25.893 336 189 10 6 308 5 313 6.83e-16 79.7
MS.gene47727.t1 MTR_4g485620 23.913 322 195 11 17 309 1 301 7.04e-16 79.7
MS.gene47727.t1 MTR_4g095008 25.994 327 204 12 15 324 21 326 8.19e-16 79.7
MS.gene47727.t1 MTR_7g080935 23.585 318 213 11 3 308 9 308 2.14e-15 78.2
MS.gene47727.t1 MTR_4g485630 25.857 321 205 11 6 309 10 314 2.45e-15 77.8
MS.gene47727.t1 MTR_1g107365 26.524 328 196 13 5 309 45 350 2.63e-15 77.8
MS.gene47727.t1 MTR_5g045970 23.810 336 214 14 6 316 17 335 3.82e-15 77.4
MS.gene47727.t1 MTR_4g094220 25.217 345 202 12 3 308 5 332 4.23e-15 77.4
MS.gene47727.t1 MTR_3g079480 26.000 350 221 12 2 322 18 358 4.64e-15 77.0
MS.gene47727.t1 MTR_6g038300 23.438 320 207 11 6 308 12 310 5.13e-15 77.0
MS.gene47727.t1 MTR_5g029800 25.786 318 198 11 5 305 11 307 5.42e-15 77.0
MS.gene47727.t1 MTR_7g080940 24.074 324 204 12 3 308 9 308 6.02e-15 76.6
MS.gene47727.t1 MTR_5g072830 24.214 318 214 10 4 313 9 307 6.22e-15 76.6
MS.gene47727.t1 MTR_7g070660 25.871 201 142 3 112 309 121 317 1.27e-14 75.9
MS.gene47727.t1 MTR_5g031830 25.882 340 190 15 6 308 13 327 1.28e-14 75.9
MS.gene47727.t1 MTR_6g013435 25.879 313 186 13 123 399 5 307 1.35e-14 74.3
MS.gene47727.t1 MTR_3g031400 24.762 315 207 12 1 308 14 305 1.36e-14 75.5
MS.gene47727.t1 MTR_7g013180 20.958 334 237 10 1 322 1 319 1.36e-14 75.5
MS.gene47727.t1 MTR_3g031450 23.175 315 208 10 4 308 17 307 1.62e-14 75.5
MS.gene47727.t1 MTR_8g059425 24.706 340 209 13 2 308 7 332 1.69e-14 75.5
MS.gene47727.t1 MTR_8g088560 25.312 320 196 12 6 305 11 307 1.86e-14 75.1
MS.gene47727.t1 MTR_6g038220 23.765 324 202 11 6 309 12 310 2.11e-14 75.1
MS.gene47727.t1 MTR_3g479470 25.145 346 211 14 2 314 10 340 2.16e-14 75.1
MS.gene47727.t1 MTR_6g014020 25.731 342 205 14 2 308 7 334 2.25e-14 75.1
MS.gene47727.t1 MTR_4g117890 23.839 323 198 13 2 305 10 303 3.23e-14 74.3
MS.gene47727.t1 MTR_6g014220 22.921 493 264 19 2 399 7 478 3.29e-14 74.3
MS.gene47727.t1 MTR_1g107380 27.358 212 130 8 110 308 123 323 3.33e-14 74.3
MS.gene47727.t1 MTR_5g072820 24.675 308 209 10 4 305 9 299 3.44e-14 74.3
MS.gene47727.t1 MTR_7g070610 26.570 207 138 5 112 309 123 324 3.94e-14 74.3
MS.gene47727.t1 MTR_3g084540 22.796 329 207 11 7 308 8 316 4.79e-14 73.9
MS.gene47727.t1 MTR_5g072840 23.548 310 216 8 4 308 9 302 5.40e-14 73.6
MS.gene47727.t1 MTR_4g485590 26.647 334 196 13 4 322 8 307 7.89e-14 73.2
MS.gene47727.t1 MTR_1g062380 24.047 341 194 11 6 309 17 329 8.15e-14 73.2
MS.gene47727.t1 MTR_5g016480 24.412 340 228 11 2 323 5 333 8.59e-14 73.2
MS.gene47727.t1 MTR_7g012120 29.412 187 118 5 124 305 136 313 1.00e-13 73.2
MS.gene47727.t1 MTR_4g094920 25.305 328 205 11 15 324 36 341 1.05e-13 73.2
MS.gene47727.t1 MTR_8g009073 28.729 181 119 6 133 310 3 176 1.41e-13 71.6
MS.gene47727.t1 MTR_6g014040 24.348 345 207 12 2 308 7 335 1.55e-13 72.4
MS.gene47727.t1 MTR_6g038230 22.981 322 212 13 4 309 10 311 1.58e-13 72.4
MS.gene47727.t1 MTR_8g466240 25.000 336 214 14 3 322 6 319 1.62e-13 72.4
MS.gene47727.t1 MTR_7g055710 24.706 340 191 16 6 309 12 322 1.63e-13 72.4
MS.gene47727.t1 MTR_6g013450 25.444 338 210 12 3 308 8 335 1.63e-13 72.4
MS.gene47727.t1 MTR_7g070860 20.582 481 272 17 2 396 4 460 2.18e-13 72.0
MS.gene47727.t1 MTR_3g084530 24.000 325 208 13 7 308 8 316 2.37e-13 71.6
MS.gene47727.t1 MTR_1g107375 28.708 209 107 9 124 309 122 311 2.58e-13 71.6
MS.gene47727.t1 MTR_2g034990 27.835 194 115 7 124 305 131 311 2.64e-13 71.6
MS.gene47727.t1 MTR_5g058320 25.301 332 202 13 3 308 8 319 2.74e-13 71.6
MS.gene47727.t1 MTR_7g070740 25.073 343 192 17 3 309 9 322 3.65e-13 71.2
MS.gene47727.t1 MTR_7g102520 22.563 359 226 12 7 336 14 349 3.69e-13 71.2
MS.gene47727.t1 MTR_5g090590 63.265 49 18 0 332 380 6 54 4.54e-13 64.3
MS.gene47727.t1 MTR_7g011470 25.490 255 154 9 75 308 81 320 6.45e-13 70.5
MS.gene47727.t1 MTR_6g052375 35.455 110 68 1 196 302 53 162 1.05e-12 68.9
MS.gene47727.t1 MTR_8g083280 39.000 100 58 1 210 309 221 317 1.19e-12 69.7
MS.gene47727.t1 MTR_7g070800 22.360 322 218 9 6 309 7 314 1.59e-12 69.3
MS.gene47727.t1 MTR_7g117405 24.000 325 208 13 7 309 14 321 2.00e-12 68.9
MS.gene47727.t1 MTR_0009s0240 24.620 329 202 14 3 310 5 308 2.07e-12 68.9
MS.gene47727.t1 MTR_7g070870 29.252 147 98 2 171 314 181 324 2.14e-12 68.9
MS.gene47727.t1 MTR_4g118000 25.157 318 199 13 9 314 16 306 2.79e-12 68.6
MS.gene47727.t1 MTR_5g031860 24.561 342 191 14 6 308 13 326 3.06e-12 68.6
MS.gene47727.t1 MTR_4g031800 28.019 207 116 7 113 305 120 307 3.39e-12 68.2
MS.gene47727.t1 MTR_3g084520 23.043 230 154 7 97 308 92 316 4.04e-12 68.2
MS.gene47727.t1 MTR_7g102490 24.036 337 208 16 3 309 7 325 4.18e-12 68.2
MS.gene47727.t1 MTR_7g102560 22.455 334 204 13 7 309 11 320 4.40e-12 67.8
MS.gene47727.t1 MTR_5g040030 24.757 206 143 5 112 309 125 326 4.75e-12 67.8
MS.gene47727.t1 MTR_6g035185 24.695 328 201 14 9 314 15 318 4.89e-12 67.8
MS.gene47727.t1 MTR_7g011470 25.098 255 151 8 75 308 81 316 5.63e-12 67.4
MS.gene47727.t1 MTR_6g035265 23.175 315 213 10 9 314 15 309 5.69e-12 67.4
MS.gene47727.t1 MTR_5g016660 25.714 210 134 5 114 309 122 323 6.96e-12 67.4
MS.gene47727.t1 MTR_7g102450 23.028 317 208 13 7 309 13 307 8.40e-12 67.0
MS.gene47727.t1 MTR_5g072860 23.344 317 225 10 6 313 19 326 9.64e-12 67.0
MS.gene47727.t1 MTR_6g014187 24.058 345 207 14 2 308 7 334 1.42e-11 66.2
MS.gene47727.t1 MTR_5g039900 25.728 206 141 6 112 309 123 324 1.45e-11 66.2
MS.gene47727.t1 MTR_8g044140 25.701 214 127 9 114 309 88 287 1.90e-11 65.9
MS.gene47727.t1 MTR_4g117960 23.220 323 210 15 9 314 15 316 2.17e-11 65.9
MS.gene47727.t1 MTR_7g070810 26.442 208 139 6 112 314 119 317 3.23e-11 65.1
MS.gene47727.t1 MTR_7g102550 25.592 211 137 5 111 309 120 322 3.68e-11 65.1
MS.gene47727.t1 MTR_6g035295 23.373 338 209 13 5 313 12 328 3.84e-11 65.1
MS.gene47727.t1 MTR_2g059240 25.837 209 136 5 114 309 123 325 5.24e-11 64.7
MS.gene47727.t1 MTR_5g067170 23.077 312 208 11 9 305 15 309 6.66e-11 64.3
MS.gene47727.t1 MTR_6g014200 26.667 345 196 15 3 308 5 331 6.72e-11 64.3
MS.gene47727.t1 MTR_6g014050 26.154 260 160 10 75 308 82 335 6.73e-11 64.3
MS.gene47727.t1 MTR_7g070910 22.727 330 217 11 3 309 9 323 7.80e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47727.t1 AT3G21750 38.650 326 176 9 3 319 2 312 1.13e-67 222
MS.gene47727.t1 AT3G21760 38.973 331 188 5 3 322 2 329 5.22e-67 221
MS.gene47727.t1 AT4G15280 39.144 327 186 8 3 322 2 322 2.14e-65 216
MS.gene47727.t1 AT4G15280 39.144 327 186 8 3 322 34 354 2.58e-65 217
MS.gene47727.t1 AT3G21780 39.228 311 177 7 3 309 2 304 1.50e-64 214
MS.gene47727.t1 AT3G21790 37.578 322 176 7 3 309 2 313 2.02e-64 214
MS.gene47727.t1 AT3G21800 38.006 321 176 8 1 309 1 310 5.24e-62 207
MS.gene47727.t1 AT1G07250 38.941 321 180 11 1 308 2 319 4.11e-60 202
MS.gene47727.t1 AT2G29730 37.188 320 183 8 1 309 1 313 5.47e-58 196
MS.gene47727.t1 AT1G07240 35.604 323 188 8 1 308 1 318 2.02e-56 192
MS.gene47727.t1 AT2G29740 36.119 335 192 12 2 321 5 332 1.94e-54 187
MS.gene47727.t1 AT1G07260 35.241 332 196 11 3 321 4 329 2.71e-54 187
MS.gene47727.t1 AT2G29750 36.890 328 185 13 2 313 5 326 1.29e-52 182
MS.gene47727.t1 AT2G29710 36.957 322 178 9 1 308 1 311 6.82e-52 180
MS.gene47727.t1 AT4G15260 41.038 212 109 5 117 322 1 202 7.13e-49 169
MS.gene47727.t1 AT4G15270 37.559 213 124 5 3 208 2 212 1.75e-40 144
MS.gene47727.t1 AT4G15270 36.607 224 133 5 3 219 2 223 2.20e-40 145
MS.gene47727.t1 AT3G16520 30.864 324 197 10 1 311 1 310 1.94e-38 144
MS.gene47727.t1 AT3G16520 30.864 324 197 10 1 311 1 310 2.37e-38 144
MS.gene47727.t1 AT3G16520 31.173 324 196 11 1 311 1 310 2.73e-38 144
MS.gene47727.t1 AT4G15270 38.071 197 113 5 3 192 2 196 2.16e-35 130
MS.gene47727.t1 AT5G66690 27.761 335 197 16 1 318 3 309 7.96e-33 129
MS.gene47727.t1 AT4G01070 30.408 319 196 10 2 310 5 307 1.38e-32 126
MS.gene47727.t1 AT4G01070 30.063 316 201 9 2 310 5 307 5.68e-32 126
MS.gene47727.t1 AT5G26310 28.529 333 203 15 1 322 3 311 1.68e-31 125
MS.gene47727.t1 AT3G50740 26.126 333 210 14 1 318 3 314 3.75e-28 115
MS.gene47727.t1 AT1G01420 29.712 313 198 9 6 310 12 310 9.07e-28 114
MS.gene47727.t1 AT1G01420 29.712 313 198 9 6 310 9 307 9.19e-28 114
MS.gene47727.t1 AT2G18570 27.052 329 198 12 1 310 1 306 1.78e-26 110
MS.gene47727.t1 AT1G01390 29.393 313 199 11 6 310 26 324 2.28e-26 110
MS.gene47727.t1 AT1G01390 29.393 313 199 11 6 310 9 307 2.30e-26 110
MS.gene47727.t1 AT4G36770 28.349 321 192 11 8 313 7 304 6.09e-25 106
MS.gene47727.t1 AT5G12890 25.225 333 208 16 2 310 7 322 7.06e-21 94.7
MS.gene47727.t1 AT3G46700 24.688 320 216 11 1 315 5 304 8.76e-19 88.2
MS.gene47727.t1 AT4G15490 27.711 249 144 8 94 323 100 331 1.27e-18 87.8
MS.gene47727.t1 AT3G21560 24.926 337 195 13 6 309 13 324 5.26e-18 86.3
MS.gene47727.t1 AT1G05680 25.697 323 204 11 4 309 5 308 1.35e-17 84.7
MS.gene47727.t1 AT4G15500 27.126 247 149 10 94 324 97 328 1.37e-17 84.7
MS.gene47727.t1 AT1G22370 26.647 334 204 11 2 308 10 329 2.17e-17 84.3
MS.gene47727.t1 AT2G15480 25.150 334 220 10 2 314 7 331 2.80e-17 84.0
MS.gene47727.t1 AT4G34135 25.360 347 193 13 2 309 8 327 3.26e-17 82.4
MS.gene47727.t1 AT2G15480 25.150 334 220 10 2 314 7 331 3.91e-17 83.6
MS.gene47727.t1 AT4G34135 25.360 347 193 13 2 309 8 327 5.77e-17 82.8
MS.gene47727.t1 AT2G36750 23.006 326 210 13 7 308 12 320 1.20e-16 82.0
MS.gene47727.t1 AT3G55710 25.231 325 217 10 2 315 5 314 1.50e-16 81.6
MS.gene47727.t1 AT2G36780 23.913 322 213 12 7 308 16 325 1.66e-16 81.6
MS.gene47727.t1 AT3G02100 23.385 325 216 11 1 305 9 320 2.44e-16 80.9
MS.gene47727.t1 AT3G46670 25.000 328 199 16 6 315 10 308 2.77e-16 80.9
MS.gene47727.t1 AT2G18560 25.751 233 152 7 86 312 1 218 2.91e-16 80.1
MS.gene47727.t1 AT1G05675 24.540 326 204 12 4 309 5 308 3.08e-16 80.5
MS.gene47727.t1 AT4G15480 27.197 239 130 9 95 311 111 327 3.16e-16 80.9
MS.gene47727.t1 AT1G78270 24.855 346 211 12 2 314 10 339 3.92e-16 80.5
MS.gene47727.t1 AT4G34131 26.744 344 192 14 2 309 7 326 4.94e-16 80.1
MS.gene47727.t1 AT1G51210 25.610 328 198 12 3 311 18 318 4.97e-16 79.7
MS.gene47727.t1 AT3G55700 24.615 325 215 9 2 315 5 310 9.67e-16 79.3
MS.gene47727.t1 AT2G36800 22.419 339 198 14 7 308 14 324 2.26e-15 78.2
MS.gene47727.t1 AT2G36770 22.222 324 216 12 7 308 16 325 2.42e-15 78.2
MS.gene47727.t1 AT2G23250 32.500 200 113 9 125 314 106 293 3.16e-15 77.4
MS.gene47727.t1 AT5G59580 23.724 333 219 15 3 322 7 317 1.41e-14 75.5
MS.gene47727.t1 AT2G30150 26.101 318 196 10 6 308 14 307 1.63e-14 75.5
MS.gene47727.t1 AT3G46690 24.451 319 209 14 1 308 5 302 1.67e-14 75.5
MS.gene47727.t1 AT2G31750 25.513 341 205 14 3 322 6 318 2.48e-14 75.1
MS.gene47727.t1 AT2G15490 24.699 332 216 11 6 314 8 328 2.81e-14 74.7
MS.gene47727.t1 AT2G31750 25.513 341 205 14 3 322 6 318 3.70e-14 74.3
MS.gene47727.t1 AT3G46650 23.248 314 211 12 3 315 8 292 4.18e-14 73.9
MS.gene47727.t1 AT5G03490 25.000 324 212 9 2 311 16 322 4.71e-14 73.9
MS.gene47727.t1 AT2G15490 24.771 327 212 11 6 309 8 323 5.03e-14 73.9
MS.gene47727.t1 AT2G23260 25.938 320 204 11 2 308 7 306 9.36e-14 73.2
MS.gene47727.t1 AT3G11340 26.198 313 202 12 3 308 7 297 9.71e-14 72.8
MS.gene47727.t1 AT2G30150 25.714 315 195 10 9 308 1 291 1.09e-13 72.8
MS.gene47727.t1 AT2G36760 22.360 322 218 12 7 308 16 325 1.17e-13 72.8
MS.gene47727.t1 AT5G59590 24.625 333 221 14 1 322 6 319 1.33e-13 72.4
MS.gene47727.t1 AT5G37950 25.604 207 144 6 106 308 79 279 2.60e-13 71.2
MS.gene47727.t1 AT2G31790 28.774 212 130 7 112 309 106 310 4.45e-13 70.9
MS.gene47727.t1 AT5G38010 24.843 318 211 13 2 308 7 307 4.48e-13 70.9
MS.gene47727.t1 AT2G28080 25.214 234 156 7 83 308 103 325 4.72e-13 70.9
MS.gene47727.t1 AT1G22340 24.000 350 198 12 2 308 10 334 7.27e-13 70.5
MS.gene47727.t1 AT2G36790 23.053 321 217 11 7 308 15 324 1.42e-12 69.7
MS.gene47727.t1 AT5G14860 25.220 341 192 14 7 309 10 325 2.31e-12 68.9
MS.gene47727.t1 AT5G17050 23.729 236 163 5 81 309 90 315 2.74e-12 68.6
MS.gene47727.t1 AT5G37950 25.243 206 140 6 106 308 79 273 3.58e-12 67.8
MS.gene47727.t1 AT2G30140 19.737 456 289 13 6 400 14 453 1.03e-11 66.6
MS.gene47727.t1 AT4G34138 24.000 350 214 13 3 322 9 336 1.63e-11 66.2
MS.gene47727.t1 AT2G30140 19.956 456 287 14 6 400 14 452 2.11e-11 65.9
MS.gene47727.t1 AT5G38040 22.072 444 266 15 15 395 20 446 2.35e-11 65.5
MS.gene47727.t1 AT1G24100 23.054 334 201 12 3 309 9 313 8.69e-11 63.9

Find 97 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCTTCCTACACTTATTT+AGG 0.154077 5.3:+72986805 MS.gene47727:CDS
GATTACCCTCTTTATGATTT+AGG 0.202621 5.3:+72986382 MS.gene47727:CDS
GTCAACAGTGCCCTTAGTTT+TGG 0.207899 5.3:-72986164 None:intergenic
GCAGCCATGGTGCCCTTTGC+TGG 0.240355 5.3:-72986352 None:intergenic
TGGATATTGCATTGGATTAT+AGG 0.259535 5.3:+72986638 MS.gene47727:CDS
CGGAACCTAGATCGGAGTTT+GGG 0.291684 5.3:-72985640 None:intergenic
CTAAGATTGAGAGAGGAATA+AGG 0.330678 5.3:+72986701 MS.gene47727:CDS
GATTGATTATATTATGAATC+AGG 0.337657 5.3:+72986834 MS.gene47727:CDS
TAATGCCATTTACTTTCTTT+AGG 0.340999 5.3:-72986030 None:intergenic
GAGTAAGAAGACTTTGTTAG+AGG 0.346933 5.3:+72986780 MS.gene47727:CDS
TTTCCTCTGCTTCGGGAGTA+GGG 0.362142 5.3:+72986243 MS.gene47727:CDS
AGTGGCCTAAAGAAAGTAAA+TGG 0.372229 5.3:+72986025 MS.gene47727:CDS
GCGGAACCTAGATCGGAGTT+TGG 0.385221 5.3:-72985641 None:intergenic
TAATGACCAAGACAGTTATT+CGG 0.391428 5.3:-72985523 None:intergenic
ACTTCCGGTGTTGCTTCCCT+TGG 0.413686 5.3:+72985833 MS.gene47727:CDS
AGCTTCGAGGAGAGCATTCA+TGG 0.414952 5.3:-72985663 None:intergenic
CACATGCTGTTGAGAATAGT+AGG 0.421515 5.3:+72986299 MS.gene47727:CDS
ACCAAACCTAAATCATAAAG+AGG 0.431163 5.3:-72986388 None:intergenic
AGAGGTCCCACCGGATATAT+CGG 0.437971 5.3:-72986127 None:intergenic
AGGAGTGTGTTGGATAAGGC+TGG 0.447889 5.3:+72986721 MS.gene47727:CDS
GATTATAGGATGGAGTTTAG+TGG 0.448957 5.3:+72986652 MS.gene47727:CDS
AAACCATGAGCCCAAAACTA+AGG 0.449479 5.3:+72986153 MS.gene47727:CDS
AATAAGGAGTGTGTTGGATA+AGG 0.453709 5.3:+72986717 MS.gene47727:CDS
TTGGGCTCATGGTTTAATAG+AGG 0.453888 5.3:-72986145 None:intergenic
GGAATGGGGTTGGCGAAACT+CGG 0.461460 5.3:-72985938 None:intergenic
ATCGGTATATCTGATAGATC+TGG 0.467328 5.3:-72986109 None:intergenic
TCCTTGTCTAGTAGTGAGGT+TGG 0.485826 5.3:-72985714 None:intergenic
GAGAGGAATAAGGAGTGTGT+TGG 0.494443 5.3:+72986711 MS.gene47727:CDS
CGTTTGGTTTCTGAGCTTCG+AGG 0.497398 5.3:-72985676 None:intergenic
CGTAGGGACATTGAACTCAT+TGG 0.498988 5.3:-72985798 None:intergenic
ATTATCCCTTCACCTGGTGT+TGG 0.499606 5.3:+72985443 MS.gene47727:CDS
TCTTTGTTTAGCACAAAACT+AGG 0.501743 5.3:-72985974 None:intergenic
CTCATTGGCAACATCAATCA+TGG 0.502918 5.3:-72985783 None:intergenic
TTAGAAGCTTCGCGAATTCA+AGG 0.508162 5.3:-72985481 None:intergenic
ATCAGATATACCGATATATC+CGG 0.508683 5.3:+72986117 MS.gene47727:CDS
TATTGCATTGGATTATAGGA+TGG 0.523793 5.3:+72986642 MS.gene47727:CDS
GAATGGGGTTGGCGAAACTC+GGG 0.526656 5.3:-72985937 None:intergenic
AGTAAGAAGACTTTGTTAGA+GGG 0.528649 5.3:+72986781 MS.gene47727:CDS
CTTTCTTTAGGCCACTTGCA+AGG 0.548706 5.3:-72986018 None:intergenic
TAAGAGAATCGTCGATAGGA+AGG 0.550486 5.3:-72985586 None:intergenic
CTGCGTAAACCTCCAGCAAA+GGG 0.551985 5.3:+72986340 MS.gene47727:CDS
CAAACCAAGGGAAGCAACAC+CGG 0.555258 5.3:-72985837 None:intergenic
CAGAGGAAAACTACGGAGGA+AGG 0.556586 5.3:-72986229 None:intergenic
ATTCATGGCGGAACCTAGAT+CGG 0.556770 5.3:-72985648 None:intergenic
GTAATCAGAGGGTGCAGCCA+TGG 0.558153 5.3:-72986365 None:intergenic
TTATTCGGAGACGGTTATCA+CGG 0.566435 5.3:-72985508 None:intergenic
TCTGCGTAAACCTCCAGCAA+AGG 0.567676 5.3:+72986339 MS.gene47727:CDS
CCGTCTCCGAATAACTGTCT+TGG 0.568241 5.3:+72985517 MS.gene47727:CDS
TCAGCTGCTGCAGCAGAATG+AGG 0.568994 5.3:+72985907 MS.gene47727:CDS
GAAAATAAAGATTCAAACCA+AGG 0.569245 5.3:-72985850 None:intergenic
AAGAAGACTTTGTTAGAGGG+TGG 0.571832 5.3:+72986784 MS.gene47727:CDS
TTCCTCTGCTTCGGGAGTAG+GGG 0.571882 5.3:+72986244 MS.gene47727:CDS
GATAGGTGTGGATATTGCAT+TGG 0.571980 5.3:+72986630 MS.gene47727:intron
TGTGTTGGATAAGGCTGGAG+AGG 0.576452 5.3:+72986726 MS.gene47727:CDS
AACCATGAGCCCAAAACTAA+GGG 0.584006 5.3:+72986154 MS.gene47727:CDS
GCCATGGTGCCCTTTGCTGG+AGG 0.584110 5.3:-72986349 None:intergenic
AGATGACCAACACCAGGTGA+AGG 0.584388 5.3:-72985449 None:intergenic
AACCCCTACTCCCGAAGCAG+AGG 0.587033 5.3:-72986246 None:intergenic
CAGATGACCTAAATAAGTGT+AGG 0.589488 5.3:-72986812 None:intergenic
TCATAAAGAGGGTAATCAGA+GGG 0.590052 5.3:-72986376 None:intergenic
AAAATAAAGATTCAAACCAA+GGG 0.591401 5.3:-72985849 None:intergenic
TAGAAGCTTCGCGAATTCAA+GGG 0.593111 5.3:-72985480 None:intergenic
ACTACTAGACAAGGACAACA+TGG 0.594856 5.3:+72985722 MS.gene47727:CDS
CAGGATGAAGAAAGCAGAAG+TGG 0.599642 5.3:+72985418 None:intergenic
AAGTGAAGAAAACGAGCGTA+GGG 0.600689 5.3:-72985814 None:intergenic
GGAACCTAGATCGGAGTTTG+GGG 0.603547 5.3:-72985639 None:intergenic
CCAAGACAGTTATTCGGAGA+CGG 0.606311 5.3:-72985517 None:intergenic
GAAGTGAAGAAAACGAGCGT+AGG 0.608569 5.3:-72985815 None:intergenic
ACATCTGTTTCTGTTGTGTG+TGG 0.611008 5.3:-72985551 None:intergenic
GATGACCAACACCAGGTGAA+GGG 0.614413 5.3:-72985448 None:intergenic
GTTGTCCTTGTCTAGTAGTG+AGG 0.616056 5.3:-72985718 None:intergenic
ATGTTAAGAGAATCGTCGAT+AGG 0.616411 5.3:-72985590 None:intergenic
ATAGTAGGGCACGCTTCGTG+TGG 0.621660 5.3:+72986314 MS.gene47727:CDS
ACCTCCAGCAAAGGGCACCA+TGG 0.622718 5.3:+72986348 MS.gene47727:CDS
AAGAGAATCGTCGATAGGAA+GGG 0.625773 5.3:-72985585 None:intergenic
ATTCTGATGATATCATGAAG+TGG 0.626846 5.3:+72986191 MS.gene47727:CDS
GTGGTGATTATCCCTTCACC+TGG 0.627475 5.3:+72985437 MS.gene47727:CDS
CCCGAAGCAGAGGAAAACTA+CGG 0.629010 5.3:-72986236 None:intergenic
CCAAACCTAAATCATAAAGA+GGG 0.629774 5.3:-72986387 None:intergenic
GGGGTTGGCGAAACTCGGGA+TGG 0.630229 5.3:-72985933 None:intergenic
ACATGCTGTTGAGAATAGTA+GGG 0.635517 5.3:+72986300 MS.gene47727:CDS
TGGTTTAATAGAGGTCCCAC+CGG 0.636493 5.3:-72986136 None:intergenic
ATCATAAAGAGGGTAATCAG+AGG 0.637927 5.3:-72986377 None:intergenic
AGATATACCGATATATCCGG+TGG 0.639117 5.3:+72986120 MS.gene47727:CDS
TCCAACCTCACTACTAGACA+AGG 0.641161 5.3:+72985713 MS.gene47727:CDS
GATATACCGATATATCCGGT+GGG 0.645984 5.3:+72986121 MS.gene47727:CDS
GGGGAAGAGAACATTCTGGA+AGG 0.647467 5.3:-72985619 None:intergenic
AGTGCTGCTAAGATTGAGAG+AGG 0.647735 5.3:+72986694 MS.gene47727:CDS
AAGCTTCGCGAATTCAAGGG+TGG 0.655833 5.3:-72985477 None:intergenic
AGGAAAACTACGGAGGAAGG+AGG 0.665308 5.3:-72986226 None:intergenic
GAAACTAGATGACCAACACC+AGG 0.690233 5.3:-72985455 None:intergenic
GCAGAACATGTCAACAACGA+AGG 0.691669 5.3:-72985756 None:intergenic
TGTCAACAACGAAGGCTGCG+AGG 0.708349 5.3:-72985748 None:intergenic
GAAGCAGAGGAAAACTACGG+AGG 0.710914 5.3:-72986233 None:intergenic
GAACCTAGATCGGAGTTTGG+GGG 0.734101 5.3:-72985638 None:intergenic
ATTGGCAACATCAATCATGG+TGG 0.736671 5.3:-72985780 None:intergenic
TTCGAGGAGAGCATTCATGG+CGG 0.744899 5.3:-72985660 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAGATTCAAACCAA+GGG - chr5.3:72985852-72985871 None:intergenic 20.0%
!! GATTGATTATATTATGAATC+AGG + chr5.3:72986834-72986853 MS.gene47727:CDS 20.0%
! GAAAATAAAGATTCAAACCA+AGG - chr5.3:72985853-72985872 None:intergenic 25.0%
!! AAACTAGGCAATGATTTTAA+AGG - chr5.3:72985962-72985981 None:intergenic 25.0%
!! TAATGCCATTTACTTTCTTT+AGG - chr5.3:72986033-72986052 None:intergenic 25.0%
!! TTTTGTGCTAAACAAAGAAT+GGG + chr5.3:72985979-72985998 MS.gene47727:CDS 25.0%
ACCAAACCTAAATCATAAAG+AGG - chr5.3:72986391-72986410 None:intergenic 30.0%
AGTAAGAAGACTTTGTTAGA+GGG + chr5.3:72986781-72986800 MS.gene47727:CDS 30.0%
ATCAGATATACCGATATATC+CGG + chr5.3:72986117-72986136 MS.gene47727:CDS 30.0%
ATTCTGATGATATCATGAAG+TGG + chr5.3:72986191-72986210 MS.gene47727:CDS 30.0%
CCAAACCTAAATCATAAAGA+GGG - chr5.3:72986390-72986409 None:intergenic 30.0%
GATTACCCTCTTTATGATTT+AGG + chr5.3:72986382-72986401 MS.gene47727:CDS 30.0%
TAATGACCAAGACAGTTATT+CGG - chr5.3:72985526-72985545 None:intergenic 30.0%
TATTGCATTGGATTATAGGA+TGG + chr5.3:72986642-72986661 MS.gene47727:CDS 30.0%
TGGATATTGCATTGGATTAT+AGG + chr5.3:72986638-72986657 MS.gene47727:CDS 30.0%
! ACAGACTAATGCTTTTGAAT+TGG + chr5.3:72986594-72986613 MS.gene47727:intron 30.0%
! GTTTTGTGCTAAACAAAGAA+TGG + chr5.3:72985978-72985997 MS.gene47727:CDS 30.0%
! TCTTTGTTTAGCACAAAACT+AGG - chr5.3:72985977-72985996 None:intergenic 30.0%
! TTTTGATGAAGATCAGGTTA+AGG + chr5.3:72986270-72986289 MS.gene47727:CDS 30.0%
!! AGGCAATGATTTTAAAGGAA+TGG - chr5.3:72985957-72985976 None:intergenic 30.0%
!! GCAATGATTTTAAAGGAATG+GGG - chr5.3:72985955-72985974 None:intergenic 30.0%
!! GGCAATGATTTTAAAGGAAT+GGG - chr5.3:72985956-72985975 None:intergenic 30.0%
ACATGCTGTTGAGAATAGTA+GGG + chr5.3:72986300-72986319 MS.gene47727:CDS 35.0%
AGATTGGAAGGATAATTGGA+TGG + chr5.3:72986443-72986462 MS.gene47727:intron 35.0%
AGTGGCCTAAAGAAAGTAAA+TGG + chr5.3:72986025-72986044 MS.gene47727:CDS 35.0%
ATCATAAAGAGGGTAATCAG+AGG - chr5.3:72986380-72986399 None:intergenic 35.0%
ATCGGTATATCTGATAGATC+TGG - chr5.3:72986112-72986131 None:intergenic 35.0%
ATGTGAAACAAATCCTCCTA+TGG - chr5.3:72986500-72986519 None:intergenic 35.0%
ATGTTAAGAGAATCGTCGAT+AGG - chr5.3:72985593-72985612 None:intergenic 35.0%
CAGATGACCTAAATAAGTGT+AGG - chr5.3:72986815-72986834 None:intergenic 35.0%
CTAAGATTGAGAGAGGAATA+AGG + chr5.3:72986701-72986720 MS.gene47727:CDS 35.0%
GAGTAAGAAGACTTTGTTAG+AGG + chr5.3:72986780-72986799 MS.gene47727:CDS 35.0%
GATTATAGGATGGAGTTTAG+TGG + chr5.3:72986652-72986671 MS.gene47727:CDS 35.0%
GATTGGAAGGATAATTGGAT+GGG + chr5.3:72986444-72986463 MS.gene47727:intron 35.0%
GGATCTTCCTACACTTATTT+AGG + chr5.3:72986805-72986824 MS.gene47727:CDS 35.0%
TCATAAAGAGGGTAATCAGA+GGG - chr5.3:72986379-72986398 None:intergenic 35.0%
TCCAATTATCCTTCCAATCT+TGG - chr5.3:72986443-72986462 None:intergenic 35.0%
! AATAAGGAGTGTGTTGGATA+AGG + chr5.3:72986717-72986736 MS.gene47727:CDS 35.0%
! CCCTCTTTATGATTTAGGTT+TGG + chr5.3:72986387-72986406 MS.gene47727:intron 35.0%
! GATTTGTTTCACATTGTGGT+TGG + chr5.3:72986506-72986525 MS.gene47727:intron 35.0%
!! TGATTTTAAAGGAATGGGGT+TGG - chr5.3:72985951-72985970 None:intergenic 35.0%
!!! GGGTTATTTTGATGAAGATC+AGG + chr5.3:72986264-72986283 MS.gene47727:CDS 35.0%
!!! TTAGGTTTGGTTTTACCTGA+AGG + chr5.3:72986400-72986419 MS.gene47727:intron 35.0%
AAACAAATCCTCCTATGGCT+GGG - chr5.3:72986495-72986514 None:intergenic 40.0%
AAACCATGAGCCCAAAACTA+AGG + chr5.3:72986153-72986172 MS.gene47727:CDS 40.0%
AACCATGAGCCCAAAACTAA+GGG + chr5.3:72986154-72986173 MS.gene47727:CDS 40.0%
AAGAAGACTTTGTTAGAGGG+TGG + chr5.3:72986784-72986803 MS.gene47727:CDS 40.0%
AAGAGAATCGTCGATAGGAA+GGG - chr5.3:72985588-72985607 None:intergenic 40.0%
AAGTGAAGAAAACGAGCGTA+GGG - chr5.3:72985817-72985836 None:intergenic 40.0%
ACTACTAGACAAGGACAACA+TGG + chr5.3:72985722-72985741 MS.gene47727:CDS 40.0%
AGATATACCGATATATCCGG+TGG + chr5.3:72986120-72986139 MS.gene47727:CDS 40.0%
ATTGGCAACATCAATCATGG+TGG - chr5.3:72985783-72985802 None:intergenic 40.0%
CACATGCTGTTGAGAATAGT+AGG + chr5.3:72986299-72986318 MS.gene47727:CDS 40.0%
CTCATTGGCAACATCAATCA+TGG - chr5.3:72985786-72985805 None:intergenic 40.0%
CTTGCAAGGCTCATGAAAAA+CGG - chr5.3:72986007-72986026 None:intergenic 40.0%
GATAGGTGTGGATATTGCAT+TGG + chr5.3:72986630-72986649 MS.gene47727:intron 40.0%
GATATACCGATATATCCGGT+GGG + chr5.3:72986121-72986140 MS.gene47727:CDS 40.0%
GCCAAGATTGGAAGGATAAT+TGG + chr5.3:72986439-72986458 MS.gene47727:intron 40.0%
GTTCGATCTAAGAATCCTTC+AGG - chr5.3:72986418-72986437 None:intergenic 40.0%
TAAGAGAATCGTCGATAGGA+AGG - chr5.3:72985589-72985608 None:intergenic 40.0%
TAGAAGCTTCGCGAATTCAA+GGG - chr5.3:72985483-72985502 None:intergenic 40.0%
TTAGAAGCTTCGCGAATTCA+AGG - chr5.3:72985484-72985503 None:intergenic 40.0%
TTAGATCGAACTGCCAAGAT+TGG + chr5.3:72986427-72986446 MS.gene47727:intron 40.0%
TTATTCGGAGACGGTTATCA+CGG - chr5.3:72985511-72985530 None:intergenic 40.0%
TTGGGCTCATGGTTTAATAG+AGG - chr5.3:72986148-72986167 None:intergenic 40.0%
! ACACTCGAGAGCATATACTT+TGG + chr5.3:72986535-72986554 MS.gene47727:intron 40.0%
! ACTCGAGAGCATATACTTTG+GGG + chr5.3:72986537-72986556 MS.gene47727:intron 40.0%
! CACTCGAGAGCATATACTTT+GGG + chr5.3:72986536-72986555 MS.gene47727:intron 40.0%
! GGAGGATTTGTTTCACATTG+TGG + chr5.3:72986502-72986521 MS.gene47727:intron 40.0%
! TTTTTCATGAGCCTTGCAAG+TGG + chr5.3:72986007-72986026 MS.gene47727:CDS 40.0%
!! ACATCTGTTTCTGTTGTGTG+TGG - chr5.3:72985554-72985573 None:intergenic 40.0%
!! TCAACAGTGCCCTTAGTTTT+GGG - chr5.3:72986166-72986185 None:intergenic 40.0%
!!! GAGACAGCTTGTTTTACGTT+TGG - chr5.3:72985695-72985714 None:intergenic 40.0%
ATCGAACTGCCAAGATTGGA+AGG + chr5.3:72986431-72986450 MS.gene47727:intron 45.0%
ATTATCCCTTCACCTGGTGT+TGG + chr5.3:72985443-72985462 MS.gene47727:CDS 45.0%
CCAAGACAGTTATTCGGAGA+CGG - chr5.3:72985520-72985539 None:intergenic 45.0%
CGTAGGGACATTGAACTCAT+TGG - chr5.3:72985801-72985820 None:intergenic 45.0%
CTTTCTTTAGGCCACTTGCA+AGG - chr5.3:72986021-72986040 None:intergenic 45.0%
GAAACAAATCCTCCTATGGC+TGG - chr5.3:72986496-72986515 None:intergenic 45.0%
GAAACTAGATGACCAACACC+AGG - chr5.3:72985458-72985477 None:intergenic 45.0%
GAAGTGAAGAAAACGAGCGT+AGG - chr5.3:72985818-72985837 None:intergenic 45.0%
GCAGAACATGTCAACAACGA+AGG - chr5.3:72985759-72985778 None:intergenic 45.0%
GTCTGTTGTTCAGCAAAGAG+TGG - chr5.3:72986580-72986599 None:intergenic 45.0%
GTTGTCCTTGTCTAGTAGTG+AGG - chr5.3:72985721-72985740 None:intergenic 45.0%
TCCAACCTCACTACTAGACA+AGG + chr5.3:72985713-72985732 MS.gene47727:CDS 45.0%
TCCTTGTCTAGTAGTGAGGT+TGG - chr5.3:72985717-72985736 None:intergenic 45.0%
TGGTTTAATAGAGGTCCCAC+CGG - chr5.3:72986139-72986158 None:intergenic 45.0%
TTTGGGGGAAGAGAACATTC+TGG - chr5.3:72985626-72985645 None:intergenic 45.0%
! ACGCTCGTTTTCTTCACTTC+CGG + chr5.3:72985818-72985837 MS.gene47727:CDS 45.0%
! AGTGCTGCTAAGATTGAGAG+AGG + chr5.3:72986694-72986713 MS.gene47727:CDS 45.0%
! ATTCATGGCGGAACCTAGAT+CGG - chr5.3:72985651-72985670 None:intergenic 45.0%
! GAGAGGAATAAGGAGTGTGT+TGG + chr5.3:72986711-72986730 MS.gene47727:CDS 45.0%
! GTCAACAGTGCCCTTAGTTT+TGG - chr5.3:72986167-72986186 None:intergenic 45.0%
! TCCGTAGTTTTCCTCTGCTT+CGG + chr5.3:72986235-72986254 MS.gene47727:CDS 45.0%
AAATCCTCCTATGGCTGGGT+GGG - chr5.3:72986491-72986510 None:intergenic 50.0%
AAGAGTGGCCATGCAGCAAT+AGG - chr5.3:72986565-72986584 None:intergenic 50.0%
AAGCTTCGCGAATTCAAGGG+TGG - chr5.3:72985480-72985499 None:intergenic 50.0%
AGAGGTCCCACCGGATATAT+CGG - chr5.3:72986130-72986149 None:intergenic 50.0%
AGATGACCAACACCAGGTGA+AGG - chr5.3:72985452-72985471 None:intergenic 50.0%
AGGAAAACTACGGAGGAAGG+AGG - chr5.3:72986229-72986248 None:intergenic 50.0%
CAAACCAAGGGAAGCAACAC+CGG - chr5.3:72985840-72985859 None:intergenic 50.0%
CAGAGGAAAACTACGGAGGA+AGG - chr5.3:72986232-72986251 None:intergenic 50.0%
CCCGAAGCAGAGGAAAACTA+CGG - chr5.3:72986239-72986258 None:intergenic 50.0%
CCGTCTCCGAATAACTGTCT+TGG + chr5.3:72985517-72985536 MS.gene47727:CDS 50.0%
CGGAACCTAGATCGGAGTTT+GGG - chr5.3:72985643-72985662 None:intergenic 50.0%
CTGCGTAAACCTCCAGCAAA+GGG + chr5.3:72986340-72986359 MS.gene47727:CDS 50.0%
GAACCTAGATCGGAGTTTGG+GGG - chr5.3:72985641-72985660 None:intergenic 50.0%
GAAGCAGAGGAAAACTACGG+AGG - chr5.3:72986236-72986255 None:intergenic 50.0%
GATGACCAACACCAGGTGAA+GGG - chr5.3:72985451-72985470 None:intergenic 50.0%
GGAACCTAGATCGGAGTTTG+GGG - chr5.3:72985642-72985661 None:intergenic 50.0%
GGGGAAGAGAACATTCTGGA+AGG - chr5.3:72985622-72985641 None:intergenic 50.0%
GTGGTGATTATCCCTTCACC+TGG + chr5.3:72985437-72985456 MS.gene47727:CDS 50.0%
TCTGCGTAAACCTCCAGCAA+AGG + chr5.3:72986339-72986358 MS.gene47727:CDS 50.0%
TGTGTTGGATAAGGCTGGAG+AGG + chr5.3:72986726-72986745 MS.gene47727:CDS 50.0%
TTGGTGTGTGAGCTGCAGAT+AGG + chr5.3:72986613-72986632 MS.gene47727:intron 50.0%
TTTCCTCTGCTTCGGGAGTA+GGG + chr5.3:72986243-72986262 MS.gene47727:CDS 50.0%
! AGGAGTGTGTTGGATAAGGC+TGG + chr5.3:72986721-72986740 MS.gene47727:CDS 50.0%
! CCGTAGTTTTCCTCTGCTTC+GGG + chr5.3:72986236-72986255 MS.gene47727:CDS 50.0%
! CGTTTGGTTTCTGAGCTTCG+AGG - chr5.3:72985679-72985698 None:intergenic 50.0%
! TTTTCCTCTGCTTCGGGAGT+AGG + chr5.3:72986242-72986261 MS.gene47727:CDS 50.0%
!! AGCTTCGAGGAGAGCATTCA+TGG - chr5.3:72985666-72985685 None:intergenic 50.0%
!! TTCGAGGAGAGCATTCATGG+CGG - chr5.3:72985663-72985682 None:intergenic 50.0%
!!! TGCCCTTAGTTTTGGGCTCA+TGG - chr5.3:72986159-72986178 None:intergenic 50.0%
ATACTAGCCCACCCAGCCAT+AGG + chr5.3:72986481-72986500 MS.gene47727:intron 55.0%
ATAGTAGGGCACGCTTCGTG+TGG + chr5.3:72986314-72986333 MS.gene47727:CDS 55.0%
CAAATCCTCCTATGGCTGGG+TGG - chr5.3:72986492-72986511 None:intergenic 55.0%
CTTCCCCCAAACTCCGATCT+AGG + chr5.3:72985635-72985654 MS.gene47727:CDS 55.0%
GATAATTGGATGGGCCCAGC+AGG + chr5.3:72986453-72986472 MS.gene47727:intron 55.0%
GCGGAACCTAGATCGGAGTT+TGG - chr5.3:72985644-72985663 None:intergenic 55.0%
GTGTGAGCTGCAGATAGGTG+TGG + chr5.3:72986618-72986637 MS.gene47727:intron 55.0%
TCAGCTGCTGCAGCAGAATG+AGG + chr5.3:72985907-72985926 MS.gene47727:CDS 55.0%
TGTCAACAACGAAGGCTGCG+AGG - chr5.3:72985751-72985770 None:intergenic 55.0%
TTCCTCTGCTTCGGGAGTAG+GGG + chr5.3:72986244-72986263 MS.gene47727:CDS 55.0%
! GAATGGGGTTGGCGAAACTC+GGG - chr5.3:72985940-72985959 None:intergenic 55.0%
! GGAATGGGGTTGGCGAAACT+CGG - chr5.3:72985941-72985960 None:intergenic 55.0%
! GTAATCAGAGGGTGCAGCCA+TGG - chr5.3:72986368-72986387 None:intergenic 55.0%
! TTGGGGTGCCTATTGCTGCA+TGG + chr5.3:72986554-72986573 MS.gene47727:intron 55.0%
!! ACTTCCGGTGTTGCTTCCCT+TGG + chr5.3:72985833-72985852 MS.gene47727:CDS 55.0%
AACCCCTACTCCCGAAGCAG+AGG - chr5.3:72986249-72986268 None:intergenic 60.0%
GGCTAGTATCTGGGCCTGCT+GGG - chr5.3:72986470-72986489 None:intergenic 60.0%
!! ACCTCCAGCAAAGGGCACCA+TGG + chr5.3:72986348-72986367 MS.gene47727:CDS 60.0%
!! GGCTGGGTGGGCTAGTATCT+GGG - chr5.3:72986479-72986498 None:intergenic 60.0%
!! TGGCTGGGTGGGCTAGTATC+TGG - chr5.3:72986480-72986499 None:intergenic 60.0%
CTAGCCCACCCAGCCATAGG+AGG + chr5.3:72986484-72986503 MS.gene47727:intron 65.0%
GCAGCCATGGTGCCCTTTGC+TGG - chr5.3:72986355-72986374 None:intergenic 65.0%
GCCATGGTGCCCTTTGCTGG+AGG - chr5.3:72986352-72986371 None:intergenic 65.0%
! GGGCTAGTATCTGGGCCTGC+TGG - chr5.3:72986471-72986490 None:intergenic 65.0%
! GGGGTTGGCGAAACTCGGGA+TGG - chr5.3:72985936-72985955 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 72985422 72986867 72985422 ID=MS.gene47727
chr5.3 mRNA 72985422 72986867 72985422 ID=MS.gene47727.t1;Parent=MS.gene47727
chr5.3 exon 72985422 72986403 72985422 ID=MS.gene47727.t1.exon1;Parent=MS.gene47727.t1
chr5.3 CDS 72985422 72986403 72985422 ID=cds.MS.gene47727.t1;Parent=MS.gene47727.t1
chr5.3 exon 72986635 72986867 72986635 ID=MS.gene47727.t1.exon2;Parent=MS.gene47727.t1
chr5.3 CDS 72986635 72986867 72986635 ID=cds.MS.gene47727.t1;Parent=MS.gene47727.t1
Gene Sequence

>MS.gene47727

ATGAAGAAAGCAGAAGTGGTGATTATCCCTTCACCTGGTGTTGGTCATCTAGTTTCCACCCTTGAATTCGCGAAGCTTCTAATCAACCGTGATAACCGTCTCCGAATAACTGTCTTGGTCATTAAATTTCCACACACAACAGAAACAGATGTCTACACTAAATCCCTTCCTATCGACGATTCTCTTAACATCATCGACCTTCCAGAATGTTCTCTTCCCCCAAACTCCGATCTAGGTTCCGCCATGAATGCTCTCCTCGAAGCTCAGAAACCAAACGTAAAACAAGCTGTCTCCAACCTCACTACTAGACAAGGACAACATGGACACCTCGCAGCCTTCGTTGTTGACATGTTCTGCACCACCATGATTGATGTTGCCAATGAGTTCAATGTCCCTACGCTCGTTTTCTTCACTTCCGGTGTTGCTTCCCTTGGTTTGAATCTTTATTTTCACACTCTTCGCGAACGAGACAATGTTGATTCGACTCAGCTGCTGCAGCAGAATGAGGTAGCCATCCCGAGTTTCGCCAACCCCATTCCTTTAAAATCATTGCCTAGTTTTGTGCTAAACAAAGAATGGGAGCCGTTTTTCATGAGCCTTGCAAGTGGCCTAAAGAAAGTAAATGGCATTATAGTAAATTCATTTGAAGAGCTAGAATCACACGCAGTTTACTCTTTTTTCACTCATCCAGATCTATCAGATATACCGATATATCCGGTGGGACCTCTATTAAACCATGAGCCCAAAACTAAGGGCACTGTTGACGCTGATTCTGATGATATCATGAAGTGGCTTGATGATCAACCTCCTTCCTCCGTAGTTTTCCTCTGCTTCGGGAGTAGGGGTTATTTTGATGAAGATCAGGTTAAGGAGATCGCACATGCTGTTGAGAATAGTAGGGCACGCTTCGTGTGGTCTCTGCGTAAACCTCCAGCAAAGGGCACCATGGCTGCACCCTCTGATTACCCTCTTTATGATTTAGGTTTGGTTTTACCTGAAGGATTCTTAGATCGAACTGCCAAGATTGGAAGGATAATTGGATGGGCCCAGCAGGCCCAGATACTAGCCCACCCAGCCATAGGAGGATTTGTTTCACATTGTGGTTGGAATTCAACACTCGAGAGCATATACTTTGGGGTGCCTATTGCTGCATGGCCACTCTTTGCTGAACAACAGACTAATGCTTTTGAATTGGTGTGTGAGCTGCAGATAGGTGTGGATATTGCATTGGATTATAGGATGGAGTTTAGTGGTGAGTCTAACTATCTTGTAAGTGCTGCTAAGATTGAGAGAGGAATAAGGAGTGTGTTGGATAAGGCTGGAGAGGTAAAGAAGAAAGTGAAAGAAATGAGTGAAAAGAGTAAGAAGACTTTGTTAGAGGGTGGATCTTCCTACACTTATTTAGGTCATCTGATTGATTATATTATGAATCAGGTATCAAATTAA
Protein sequence

>MS.gene47727.t1

MKKAEVVIIPSPGVGHLVSTLEFAKLLINRDNRLRITVLVIKFPHTTETDVYTKSLPIDDSLNIIDLPECSLPPNSDLGSAMNALLEAQKPNVKQAVSNLTTRQGQHGHLAAFVVDMFCTTMIDVANEFNVPTLVFFTSGVASLGLNLYFHTLRERDNVDSTQLLQQNEVAIPSFANPIPLKSLPSFVLNKEWEPFFMSLASGLKKVNGIIVNSFEELESHAVYSFFTHPDLSDIPIYPVGPLLNHEPKTKGTVDADSDDIMKWLDDQPPSSVVFLCFGSRGYFDEDQVKEIAHAVENSRARFVWSLRKPPAKGTMAAPSDYPLYDLGVDIALDYRMEFSGESNYLVSAAKIERGIRSVLDKAGEVKKKVKEMSEKSKKTLLEGGSSYTYLGHLIDYIMNQVSN