AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48008

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48008.t1 MTR_5g090600 76.050 476 24 3 1 403 1 459 0.0 694
MS.gene48008.t1 MTR_5g090580 70.711 478 63 4 1 401 1 478 0.0 642
MS.gene48008.t1 MTR_5g090700 65.217 483 87 6 1 403 1 482 0.0 585
MS.gene48008.t1 MTR_5g090620 62.004 479 104 5 1 401 1 479 0.0 555
MS.gene48008.t1 MTR_5g090660 62.762 478 101 5 1 402 1 477 0.0 553
MS.gene48008.t1 MTR_5g090670 62.578 481 99 6 1 401 1 480 0.0 553
MS.gene48008.t1 MTR_5g090610 62.395 476 94 5 1 402 1 465 0.0 551
MS.gene48008.t1 MTR_5g090630 63.830 470 100 5 1 401 1 469 0.0 550
MS.gene48008.t1 MTR_5g098930 57.053 475 126 9 1 401 1 471 4.49e-168 479
MS.gene48008.t1 MTR_5g090650 57.803 346 86 6 1 318 1 314 2.83e-120 352
MS.gene48008.t1 MTR_5g090690 50.515 388 100 6 65 391 18 374 7.04e-102 307
MS.gene48008.t1 MTR_5g070040 34.461 473 223 14 2 399 8 468 3.91e-72 233
MS.gene48008.t1 MTR_5g070090 35.269 465 221 14 2 397 8 461 1.85e-70 229
MS.gene48008.t1 MTR_2g046820 33.891 478 215 14 1 395 1 460 6.67e-68 222
MS.gene48008.t1 MTR_2g040530 33.610 482 213 16 1 395 1 462 4.40e-67 220
MS.gene48008.t1 MTR_2g046750 32.158 482 221 16 1 395 1 463 9.34e-62 206
MS.gene48008.t1 MTR_3g009510 27.235 481 257 18 1 395 1 474 3.98e-38 143
MS.gene48008.t1 MTR_6g023665 27.234 470 252 15 2 393 10 467 5.72e-38 143
MS.gene48008.t1 MTR_7g117170 28.942 463 247 14 6 393 16 471 8.64e-38 142
MS.gene48008.t1 MTR_6g488280 26.809 470 254 16 2 393 3 460 2.57e-36 138
MS.gene48008.t1 MTR_0428s0010 26.809 470 254 16 2 393 3 460 2.57e-36 138
MS.gene48008.t1 MTR_8g006730 24.632 475 260 13 2 393 3 462 7.47e-34 131
MS.gene48008.t1 MTR_8g006220 29.661 354 200 9 2 315 3 347 2.50e-33 130
MS.gene48008.t1 MTR_8g465670 29.070 344 207 6 2 315 4 340 9.32e-33 129
MS.gene48008.t1 MTR_6g033675 30.769 351 192 15 3 315 2 339 9.00e-32 126
MS.gene48008.t1 MTR_8g006710 24.385 488 256 16 2 399 3 467 1.82e-31 125
MS.gene48008.t1 MTR_0184s0040 29.630 351 201 14 2 317 18 357 1.90e-28 116
MS.gene48008.t1 MTR_0078s0190 29.630 351 201 14 2 317 18 357 1.90e-28 116
MS.gene48008.t1 MTR_5g019580 28.531 354 203 14 2 313 4 349 1.07e-27 114
MS.gene48008.t1 MTR_0078s0010 28.818 347 205 15 2 315 3 340 2.20e-27 113
MS.gene48008.t1 MTR_8g027870 25.652 460 260 13 6 393 19 468 5.91e-27 112
MS.gene48008.t1 MTR_8g006270 31.085 341 199 12 2 313 3 336 8.69e-27 112
MS.gene48008.t1 MTR_8g074550 24.644 491 274 18 2 400 5 491 1.84e-26 111
MS.gene48008.t1 MTR_8g027885 25.702 463 256 16 6 393 19 468 3.43e-26 110
MS.gene48008.t1 MTR_8g077590 28.986 276 164 9 53 318 91 344 8.02e-26 108
MS.gene48008.t1 MTR_7g047030 28.161 348 206 15 2 315 3 340 6.03e-25 106
MS.gene48008.t1 MTR_7g047270 28.161 348 206 15 2 315 3 340 6.03e-25 106
MS.gene48008.t1 MTR_6g033725 29.330 358 185 19 3 315 2 336 1.28e-24 105
MS.gene48008.t1 MTR_1g019510 26.420 352 205 9 2 315 3 338 1.66e-24 105
MS.gene48008.t1 MTR_5g019580 29.377 337 194 13 2 313 56 373 1.89e-24 105
MS.gene48008.t1 MTR_0184s0030 25.319 470 252 18 2 387 3 457 2.94e-24 104
MS.gene48008.t1 MTR_8g012635 30.952 294 164 13 41 315 73 346 3.13e-24 104
MS.gene48008.t1 MTR_8g009050 24.211 475 262 17 2 393 3 462 3.84e-24 104
MS.gene48008.t1 MTR_8g009055 24.528 477 258 18 2 393 3 462 4.31e-24 103
MS.gene48008.t1 MTR_8g006260 25.482 467 253 15 3 386 4 458 6.04e-24 103
MS.gene48008.t1 MTR_6g033625 24.949 489 239 17 3 393 2 460 9.19e-24 103
MS.gene48008.t1 MTR_0078s0060 28.205 351 201 15 2 315 3 339 1.29e-23 102
MS.gene48008.t1 MTR_7g046490 24.573 468 268 14 2 394 3 460 1.41e-23 102
MS.gene48008.t1 MTR_6g033615 24.678 466 241 15 3 386 2 439 1.73e-23 102
MS.gene48008.t1 MTR_6g005600 26.934 349 215 9 3 318 4 345 3.70e-23 101
MS.gene48008.t1 MTR_8g012745 28.571 287 180 11 43 318 75 347 2.51e-22 99.0
MS.gene48008.t1 MTR_8g009063 24.204 471 267 14 2 393 10 469 3.15e-22 98.6
MS.gene48008.t1 MTR_8g009073 26.087 345 216 11 2 315 3 339 4.31e-22 98.2
MS.gene48008.t1 MTR_6g033660 28.045 353 192 13 6 315 5 338 7.34e-22 97.4
MS.gene48008.t1 MTR_8g012650 28.870 239 147 7 91 315 117 346 1.06e-21 97.1
MS.gene48008.t1 MTR_4g095008 26.243 362 191 11 91 394 118 461 5.89e-21 95.1
MS.gene48008.t1 MTR_8g008990 24.313 473 266 16 2 393 3 464 6.47e-21 94.7
MS.gene48008.t1 MTR_8g009067 23.840 474 265 16 2 394 3 461 6.81e-21 94.7
MS.gene48008.t1 MTR_8g006230 30.693 202 115 7 97 285 65 254 2.96e-20 90.5
MS.gene48008.t1 MTR_0536s0020 24.597 496 239 19 2 395 15 477 6.12e-20 92.0
MS.gene48008.t1 MTR_4g117890 23.077 494 253 18 2 397 10 474 1.24e-19 90.9
MS.gene48008.t1 MTR_5g029800 23.447 499 244 18 5 397 11 477 1.77e-19 90.5
MS.gene48008.t1 MTR_6g078320 23.899 318 197 8 4 278 10 325 2.06e-19 90.5
MS.gene48008.t1 MTR_0078s0200 27.273 319 180 13 2 281 3 308 2.31e-19 88.6
MS.gene48008.t1 MTR_8g008970 25.360 347 216 11 2 315 3 339 6.73e-19 89.4
MS.gene48008.t1 MTR_8g008970 31.081 148 83 4 169 315 534 663 9.38e-11 64.3
MS.gene48008.t1 MTR_3g069710 24.628 471 256 16 2 399 9 453 1.63e-18 87.4
MS.gene48008.t1 MTR_4g094920 23.478 460 253 15 15 394 36 476 1.80e-18 87.4
MS.gene48008.t1 MTR_8g009067 24.348 345 209 9 97 394 4 343 2.39e-18 86.3
MS.gene48008.t1 MTR_5g090680 92.857 42 3 0 1 42 1 42 2.91e-18 80.5
MS.gene48008.t1 MTR_4g082820 26.129 310 187 12 4 278 6 308 9.35e-18 85.1
MS.gene48008.t1 MTR_8g066610 25.352 497 233 20 6 395 10 475 1.11e-17 85.1
MS.gene48008.t1 MTR_8g064880 30.453 243 124 11 98 318 133 352 2.56e-17 84.0
MS.gene48008.t1 MTR_4g082810 31.500 200 112 8 95 278 121 311 2.86e-17 83.6
MS.gene48008.t1 MTR_2g098430 25.895 363 197 17 2 314 3 343 3.01e-17 84.0
MS.gene48008.t1 MTR_8g009073 35.036 137 85 3 180 315 77 210 4.65e-17 82.0
MS.gene48008.t1 MTR_5g035580 24.051 474 250 22 5 399 13 455 6.85e-17 82.8
MS.gene48008.t1 MTR_6g035265 22.177 487 251 17 8 395 14 471 3.94e-16 80.5
MS.gene48008.t1 MTR_3g049970 23.514 370 192 13 96 400 129 472 6.29e-16 79.7
MS.gene48008.t1 MTR_1g032490 28.517 263 133 12 85 318 111 347 1.02e-15 79.0
MS.gene48008.t1 MTR_1g107360 26.211 351 198 16 96 400 129 464 1.55e-15 78.6
MS.gene48008.t1 MTR_3g479520 24.000 500 253 17 2 400 12 485 1.96e-15 78.2
MS.gene48008.t1 MTR_1g107350 24.317 366 188 13 96 397 128 468 2.19e-15 78.2
MS.gene48008.t1 MTR_5g464760 24.474 380 198 13 2 318 9 362 5.82e-15 76.6
MS.gene48008.t1 MTR_1g107315 27.600 250 136 9 89 318 121 345 7.67e-15 76.3
MS.gene48008.t1 MTR_5g067170 23.077 494 244 18 8 395 14 477 8.79e-15 76.3
MS.gene48008.t1 MTR_5g035560 23.305 472 256 17 5 399 11 453 9.97e-15 76.3
MS.gene48008.t1 MTR_8g012730 31.447 159 70 5 167 315 54 183 1.83e-14 73.9
MS.gene48008.t1 MTR_8g064870 28.279 244 132 12 96 318 129 350 3.12e-14 74.7
MS.gene48008.t1 MTR_1g107365 24.309 362 190 13 5 318 45 370 4.53e-14 73.9
MS.gene48008.t1 MTR_1g107380 22.933 375 191 13 91 398 130 473 5.22e-14 73.9
MS.gene48008.t1 MTR_5g031840 22.979 470 280 16 1 397 1 461 5.31e-14 73.9
MS.gene48008.t1 MTR_7g012120 25.278 360 193 11 98 395 136 481 5.32e-14 73.9
MS.gene48008.t1 MTR_8g088560 25.321 312 178 9 5 275 10 307 5.92e-14 73.6
MS.gene48008.t1 MTR_6g038240 25.788 349 198 15 96 398 122 455 6.00e-14 73.6
MS.gene48008.t1 MTR_6g038220 25.786 318 185 13 7 284 13 319 6.71e-14 73.6
MS.gene48008.t1 MTR_6g038200 25.321 312 187 13 4 279 10 311 2.21e-13 72.0
MS.gene48008.t1 MTR_1g019520 38.372 86 53 0 230 315 2 87 3.40e-13 68.9
MS.gene48008.t1 MTR_1g107285 26.939 245 124 9 96 318 128 339 3.82e-13 71.2
MS.gene48008.t1 MTR_5g464810 24.668 377 195 14 4 318 11 360 4.07e-13 71.2
MS.gene48008.t1 MTR_5g064240 24.668 377 195 14 4 318 11 360 4.07e-13 71.2
MS.gene48008.t1 MTR_8g012630 39.080 87 50 1 232 315 204 290 6.36e-13 70.1
MS.gene48008.t1 MTR_5g066410 26.778 239 120 9 96 315 115 317 9.36e-13 69.7
MS.gene48008.t1 MTR_7g080935 26.368 201 116 6 97 278 121 308 1.36e-12 69.3
MS.gene48008.t1 MTR_2g034990 22.430 321 179 10 5 275 11 311 1.45e-12 69.3
MS.gene48008.t1 MTR_7g080940 26.866 201 115 6 97 278 121 308 1.66e-12 69.3
MS.gene48008.t1 MTR_6g014220 23.611 360 204 15 97 398 132 478 1.92e-12 68.9
MS.gene48008.t1 MTR_5g016480 24.638 276 137 8 178 399 214 472 2.17e-12 68.9
MS.gene48008.t1 MTR_0036s0220 23.238 383 203 14 5 324 12 366 2.71e-12 68.6
MS.gene48008.t1 MTR_0009s0240 24.781 343 196 18 99 394 128 455 2.84e-12 68.6
MS.gene48008.t1 MTR_1g107375 23.626 364 189 16 5 318 8 332 2.99e-12 68.2
MS.gene48008.t1 MTR_5g090590 55.556 54 24 0 326 379 1 54 3.42e-12 61.6
MS.gene48008.t1 MTR_8g007565 28.807 243 125 11 96 315 124 341 3.84e-12 68.2
MS.gene48008.t1 MTR_8g083290 21.856 485 264 14 6 399 5 465 4.01e-12 68.2
MS.gene48008.t1 MTR_8g466240 23.944 355 195 15 3 314 6 328 7.66e-12 67.0
MS.gene48008.t1 MTR_6g038230 23.516 438 242 20 4 377 10 418 1.12e-11 66.6
MS.gene48008.t1 MTR_4g485620 24.843 318 171 13 17 281 1 303 1.52e-11 66.2
MS.gene48008.t1 MTR_6g038300 28.283 198 114 7 98 278 124 310 1.62e-11 66.2
MS.gene48008.t1 MTR_7g080900 21.444 457 240 19 2 380 9 424 1.65e-11 66.2
MS.gene48008.t1 MTR_6g052375 27.670 206 117 6 118 316 6 186 1.85e-11 65.1
MS.gene48008.t1 MTR_8g007650 28.395 243 126 11 96 315 124 341 2.42e-11 65.5
MS.gene48008.t1 MTR_5g072840 24.437 311 182 12 4 278 9 302 2.44e-11 65.5
MS.gene48008.t1 MTR_5g004940 24.731 279 153 9 144 397 131 377 2.74e-11 65.1
MS.gene48008.t1 MTR_3g031400 22.418 455 278 16 1 398 14 450 3.48e-11 65.1
MS.gene48008.t1 MTR_5g072820 22.930 314 177 8 4 275 9 299 3.65e-11 65.1
MS.gene48008.t1 MTR_2g035020 24.847 326 165 16 5 275 11 311 8.23e-11 63.9
MS.gene48008.t1 MTR_7g080950 26.263 198 120 7 97 278 116 303 9.24e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48008.t1 AT3G21760 33.878 490 228 9 3 402 2 485 3.01e-79 252
MS.gene48008.t1 AT3G21750 31.458 480 239 7 3 401 2 472 1.76e-77 248
MS.gene48008.t1 AT3G21790 32.444 487 235 8 3 401 2 482 1.70e-75 243
MS.gene48008.t1 AT3G21780 32.988 482 231 10 3 402 2 473 9.24e-75 241
MS.gene48008.t1 AT4G15280 33.403 479 233 11 3 399 2 476 1.51e-71 232
MS.gene48008.t1 AT4G15280 33.403 479 233 11 3 399 34 508 3.83e-71 232
MS.gene48008.t1 AT1G07250 32.990 485 217 13 1 394 2 469 3.61e-65 216
MS.gene48008.t1 AT3G21800 30.894 492 238 11 1 402 1 480 9.48e-65 214
MS.gene48008.t1 AT2G29730 31.809 481 219 12 1 394 1 459 1.18e-62 209
MS.gene48008.t1 AT4G15260 33.787 367 170 10 96 402 6 359 1.28e-59 197
MS.gene48008.t1 AT1G07240 31.393 481 220 14 1 387 1 465 7.53e-58 196
MS.gene48008.t1 AT1G07260 30.041 486 235 12 3 399 4 473 1.99e-54 187
MS.gene48008.t1 AT2G29740 30.785 484 229 15 2 395 5 472 2.10e-54 187
MS.gene48008.t1 AT2G29710 31.818 484 215 15 1 394 1 459 3.47e-54 186
MS.gene48008.t1 AT2G29750 29.939 491 237 14 2 402 5 478 4.29e-47 168
MS.gene48008.t1 AT3G16520 30.199 351 195 9 1 315 1 337 8.13e-35 134
MS.gene48008.t1 AT3G16520 30.199 351 195 9 1 315 1 337 9.25e-35 134
MS.gene48008.t1 AT3G16520 30.199 351 195 9 1 315 1 337 1.29e-34 134
MS.gene48008.t1 AT5G66690 27.606 355 201 13 1 315 3 341 1.28e-32 128
MS.gene48008.t1 AT4G01070 25.216 464 264 14 2 390 5 460 5.37e-31 124
MS.gene48008.t1 AT4G36770 30.205 341 197 11 8 315 7 339 3.13e-30 121
MS.gene48008.t1 AT5G26310 26.681 476 240 22 1 388 3 457 4.74e-30 121
MS.gene48008.t1 AT4G01070 28.161 348 208 10 2 317 5 342 5.86e-30 119
MS.gene48008.t1 AT3G50740 23.382 479 273 17 1 395 3 471 1.00e-25 108
MS.gene48008.t1 AT1G01420 24.838 463 266 14 5 393 11 465 1.10e-25 108
MS.gene48008.t1 AT1G01420 24.838 463 266 14 5 393 8 462 1.22e-25 108
MS.gene48008.t1 AT2G18570 26.857 350 209 11 1 315 1 338 1.96e-25 108
MS.gene48008.t1 AT4G15270 32.381 210 107 6 3 178 2 210 1.31e-24 101
MS.gene48008.t1 AT4G15270 31.390 223 118 6 3 191 2 223 1.45e-24 103
MS.gene48008.t1 AT1G01390 26.100 341 216 9 5 315 8 342 1.80e-24 105
MS.gene48008.t1 AT1G01390 26.100 341 216 9 5 315 25 359 2.14e-24 105
MS.gene48008.t1 AT4G15270 32.500 200 100 6 3 168 2 200 2.51e-21 92.4
MS.gene48008.t1 AT2G18560 29.907 214 134 7 109 315 44 248 1.52e-18 87.0
MS.gene48008.t1 AT3G55700 25.547 274 145 8 168 399 196 452 1.07e-17 85.1
MS.gene48008.t1 AT2G36760 21.782 505 261 21 7 403 16 494 3.26e-17 84.0
MS.gene48008.t1 AT3G21560 25.680 331 172 12 5 279 12 324 5.13e-17 83.2
MS.gene48008.t1 AT2G36750 25.210 357 205 13 99 399 135 485 2.03e-15 78.2
MS.gene48008.t1 AT5G12890 22.037 481 270 18 2 391 7 473 2.39e-15 78.2
MS.gene48008.t1 AT3G55710 26.989 352 187 13 99 399 124 456 2.81e-15 77.8
MS.gene48008.t1 AT2G15480 22.793 487 268 18 2 395 7 478 8.93e-15 76.3
MS.gene48008.t1 AT2G15480 22.535 497 267 18 2 395 7 488 1.24e-14 75.9
MS.gene48008.t1 AT2G36770 21.357 501 268 19 7 403 16 494 2.73e-14 74.7
MS.gene48008.t1 AT2G16890 23.061 490 251 18 6 401 10 467 3.65e-14 74.3
MS.gene48008.t1 AT4G34131 24.950 501 239 24 2 395 7 477 4.21e-14 74.3
MS.gene48008.t1 AT3G46670 23.404 470 251 21 6 397 10 448 6.16e-14 73.6
MS.gene48008.t1 AT3G46660 22.845 464 269 23 3 397 12 455 1.08e-13 72.8
MS.gene48008.t1 AT2G31790 22.107 484 251 17 2 394 5 453 1.29e-13 72.8
MS.gene48008.t1 AT1G22400 24.667 450 254 19 2 378 10 447 4.43e-13 71.2
MS.gene48008.t1 AT1G22380 23.478 460 246 18 2 378 10 446 4.50e-13 70.9
MS.gene48008.t1 AT2G36780 21.385 491 272 21 7 399 16 490 4.83e-13 70.9
MS.gene48008.t1 AT1G51210 24.930 357 185 14 3 316 18 334 1.63e-12 69.3
MS.gene48008.t1 AT2G16890 24.022 358 195 12 6 315 10 338 2.80e-12 68.6
MS.gene48008.t1 AT1G22340 22.314 363 209 12 2 309 10 354 3.30e-12 68.6
MS.gene48008.t1 AT5G03490 26.250 320 186 14 98 400 138 424 4.72e-12 67.8
MS.gene48008.t1 AT3G46690 21.875 480 257 19 1 397 5 449 4.91e-12 67.8
MS.gene48008.t1 AT5G59590 24.781 343 190 16 101 395 125 447 5.05e-12 67.8
MS.gene48008.t1 AT1G78270 25.263 380 183 14 2 313 10 356 6.42e-12 67.4
MS.gene48008.t1 AT5G14860 24.691 324 185 11 7 279 10 325 6.46e-12 67.4
MS.gene48008.t1 AT2G43820 26.582 316 173 13 2 278 4 299 8.96e-12 67.0
MS.gene48008.t1 AT1G10400 23.640 478 272 23 1 400 3 465 9.77e-12 67.0
MS.gene48008.t1 AT4G15500 26.538 260 164 9 34 280 70 315 9.85e-12 67.0
MS.gene48008.t1 AT5G59580 21.663 457 276 23 3 395 7 445 1.17e-11 66.6
MS.gene48008.t1 AT1G22370 23.939 330 188 11 2 278 10 329 1.37e-11 66.2
MS.gene48008.t1 AT3G11340 22.391 460 274 18 3 399 7 446 1.46e-11 66.2
MS.gene48008.t1 AT2G36800 23.053 321 188 11 7 278 14 324 1.57e-11 66.2
MS.gene48008.t1 AT4G15480 26.291 213 114 8 91 280 134 326 3.44e-11 65.1

Find 111 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAACAATGTCCTTGGTTT+TGG 0.184269 5.2:-76749124 None:intergenic
GGATCTTCTTCCAATTATTT+AGG 0.222600 5.2:+76749756 MS.gene48008:CDS
ATCGGTAAACTTGTTAATTC+AGG 0.233481 5.2:-76749066 None:intergenic
TTTGGGCTCAGGACCTAATA+TGG 0.257072 5.2:-76749106 None:intergenic
AATTAAACGACCTAAATAAT+TGG 0.261283 5.2:-76749766 None:intergenic
CACCCTTCGGTGCAGGTTTA+CGG 0.268551 5.2:-76749293 None:intergenic
ATCACGGTTGATTAGAAGTT+TGG 0.300557 5.2:-76748463 None:intergenic
GAAGAAACTGGATTAGTGTT+TGG 0.321624 5.2:-76748612 None:intergenic
ACTTCCAGTGTTGCTTTCCT+TGG 0.331322 5.2:+76748796 MS.gene48008:CDS
ACTCAAGGGTGGAAACTAAA+TGG 0.332484 5.2:-76748437 None:intergenic
AAGAAACTGGATTAGTGTTT+GGG 0.337146 5.2:-76748611 None:intergenic
GAGTAAGAAGACTTTGTTAG+AGG 0.346933 5.2:+76749731 MS.gene48008:CDS
ACAAGATTGAGAAAGGAATA+AGG 0.346991 5.2:+76749652 MS.gene48008:CDS
TGAGTTTGAAGGAAACAAAT+TGG 0.353873 5.2:-76748905 None:intergenic
TGATGACTAAAACAGTTATT+CGG 0.369061 5.2:-76748494 None:intergenic
GTACGATCTAAGAATCCTTC+AGG 0.396789 5.2:-76749366 None:intergenic
TCCGAAGTTAAAAGATAGTT+AGG 0.397212 5.2:-76749630 None:intergenic
CGTTTGGTTTCTGAGCTTCA+AGG 0.407371 5.2:-76748647 None:intergenic
AACCTGCACCGAAGGGTGCC+AGG 0.409570 5.2:+76749298 MS.gene48008:CDS
TTAGATCGTACGGCAGAGAT+TGG 0.409709 5.2:+76749378 MS.gene48008:CDS
TGGATAAGGATGGAGAGTTC+AGG 0.411408 5.2:+76749682 MS.gene48008:CDS
GCCCTGGCACCCTTCGGTGC+AGG 0.413118 5.2:-76749300 None:intergenic
ATAGTAAGGCCCACTTCATA+TGG 0.415409 5.2:+76749265 MS.gene48008:CDS
ATTCCCATTCCTTGCTTAGC+AGG 0.429956 5.2:-76748939 None:intergenic
TATCCGGTAGGACCCATATT+AGG 0.438415 5.2:+76749093 MS.gene48008:CDS
TTTATCCCTTCTCCTGGTGT+TGG 0.439627 5.2:+76748414 MS.gene48008:CDS
GGTTAGATACGTTTGACGTT+TGG 0.441331 5.2:-76748663 None:intergenic
GTTGATGACGCGGAGTGAAT+CGG 0.443171 5.2:-76748568 None:intergenic
AGCTTCAAGGTGAGCGGACA+TGG 0.443539 5.2:-76748634 None:intergenic
AATAAGGAGTGTGTTGGATA+AGG 0.445356 5.2:+76749668 MS.gene48008:CDS
ACTTCGGACAAGATTGAGAA+AGG 0.447026 5.2:+76749645 MS.gene48008:CDS
TGTAGGGATGGAGAACTCTT+TGG 0.448555 5.2:-76748761 None:intergenic
TGAGCGGACATGGAAGAAAC+TGG 0.449218 5.2:-76748624 None:intergenic
GGTCCTACCGGATATATAAT+CGG 0.458016 5.2:-76749084 None:intergenic
GGTGCAGCCCTGGCACCCTT+CGG 0.458859 5.2:-76749306 None:intergenic
TTGGGCTCAGGACCTAATAT+GGG 0.459918 5.2:-76749105 None:intergenic
AGGAGTGTGTTGGATAAGGA+TGG 0.460546 5.2:+76749672 MS.gene48008:CDS
AAGTTTACCGATTATATATC+CGG 0.460905 5.2:+76749077 MS.gene48008:CDS
ACGCGGAGTGAATCGGAGAT+TGG 0.463729 5.2:-76748561 None:intergenic
GAAGAAGACGAGTGTAGGGA+TGG 0.467348 5.2:-76748773 None:intergenic
CCCAAAACCAAGGACATTGT+TGG 0.473013 5.2:+76749123 MS.gene48008:CDS
ATCAGAACCAACAATGTCCT+TGG 0.474274 5.2:-76749130 None:intergenic
GAAACAAATTGGCGAAAGTC+GGG 0.478141 5.2:-76748894 None:intergenic
CTCTTTGGCAACATCAATCA+TGG 0.482802 5.2:-76748746 None:intergenic
GTGGTGTTTATCCCTTCTCC+TGG 0.491408 5.2:+76748408 MS.gene48008:CDS
TTCCCTGCTAAGCAAGGAAT+GGG 0.502187 5.2:+76748936 MS.gene48008:CDS
GTAATCAGAAGGTGCAGCCC+TGG 0.512339 5.2:-76749316 None:intergenic
AACCTTTGCTTCCGAAGCAA+AGG 0.512653 5.2:-76749197 None:intergenic
ATCGTACGGCAGAGATTGGA+AGG 0.512730 5.2:+76749382 MS.gene48008:CDS
CAAACCAAGGAAAGCAACAC+TGG 0.514093 5.2:-76748800 None:intergenic
GGAAACAAATTGGCGAAAGT+CGG 0.515501 5.2:-76748895 None:intergenic
TGAATTTACTATGATTCCAT+CGG 0.518984 5.2:-76748998 None:intergenic
TTCCTTTGCTTCGGAAGCAA+AGG 0.519053 5.2:+76749195 MS.gene48008:CDS
TTCCCATTCCTTGCTTAGCA+GGG 0.519847 5.2:-76748938 None:intergenic
AGTAAGAAGACTTTGTTAGA+GGG 0.524588 5.2:+76749732 MS.gene48008:CDS
GGAGTGAATCGGAGATTGGA+AGG 0.526271 5.2:-76748557 None:intergenic
GAAGTGAAGAAGACGAGTGT+AGG 0.527981 5.2:-76748778 None:intergenic
GCTAAGCAAGGAATGGGAAT+CGG 0.533095 5.2:+76748942 MS.gene48008:CDS
GGACAATTTAATTTGATACC+TGG 0.537015 5.2:-76749803 None:intergenic
AATTGATTATATTATGAACC+AGG 0.537333 5.2:+76749785 MS.gene48008:CDS
TGTAGAGTGGAGTATAGTAG+TGG 0.539221 5.2:+76749606 MS.gene48008:CDS
TCTCCGTAAACCTGCACCGA+AGG 0.539263 5.2:+76749290 MS.gene48008:CDS
AAGTGAAGAAGACGAGTGTA+GGG 0.541815 5.2:-76748777 None:intergenic
GTTCCCTGCTAAGCAAGGAA+TGG 0.542227 5.2:+76748935 MS.gene48008:CDS
TTAGAAGTTTGGCGAACTCA+AGG 0.542612 5.2:-76748452 None:intergenic
TAATTCAGGATGAGAGAAAG+AGG 0.542857 5.2:-76749052 None:intergenic
GAACGAGGCAATGAGTTTGA+AGG 0.546536 5.2:-76748916 None:intergenic
ATATGCTATTGAGAATAGTA+AGG 0.549451 5.2:+76749251 MS.gene48008:CDS
TGATGATCAACCTCTTTCCT+CGG 0.551057 5.2:+76749167 MS.gene48008:CDS
CAACATGAAGAAAGCAGAAG+TGG 0.551751 5.2:+76748389 None:intergenic
ACCTGCACCGAAGGGTGCCA+GGG 0.557282 5.2:+76749299 MS.gene48008:CDS
TGATTCCATCGGCATTCTTG+AGG 0.557895 5.2:-76748987 None:intergenic
GAAAGGAATAAGGAGTGTGT+TGG 0.560047 5.2:+76749662 MS.gene48008:CDS
TTATTCGGAGACGGCTATCA+CGG 0.561361 5.2:-76748479 None:intergenic
TGAAGGATTCTTAGATCGTA+CGG 0.567665 5.2:+76749368 MS.gene48008:CDS
GCCTCGTTCCCTGCTAAGCA+AGG 0.568976 5.2:+76748930 MS.gene48008:CDS
AGTGTATACATCAATTTCAG+TGG 0.569138 5.2:-76748529 None:intergenic
AAATGGCCAACACCAGGAGA+AGG 0.569712 5.2:-76748420 None:intergenic
AAGAAGACTTTGTTAGAGGG+AGG 0.577907 5.2:+76749735 MS.gene48008:CDS
CATCAATTTCAGTGGCGTGT+GGG 0.579168 5.2:-76748521 None:intergenic
ACATCAATTTCAGTGGCGTG+TGG 0.581929 5.2:-76748522 None:intergenic
AGGAAAACTACCGAGGAAAG+AGG 0.586295 5.2:-76749177 None:intergenic
GGACCTAATATGGGTCCTAC+CGG 0.589824 5.2:-76749096 None:intergenic
TAGAAGTTTGGCGAACTCAA+GGG 0.591389 5.2:-76748451 None:intergenic
TCAGAAAGAGTGTAATCAGA+AGG 0.599938 5.2:-76749327 None:intergenic
AGAGGCCTCAAGAATGCCGA+TGG 0.601382 5.2:+76748982 MS.gene48008:CDS
CAAATTGGCGAAAGTCGGGA+TGG 0.601417 5.2:-76748890 None:intergenic
GTAGAGTGGAGTATAGTAGT+GGG 0.601448 5.2:+76749607 MS.gene48008:CDS
CTCCGTAAACCTGCACCGAA+GGG 0.601925 5.2:+76749291 MS.gene48008:CDS
GAAACTAAATGGCCAACACC+AGG 0.609913 5.2:-76748426 None:intergenic
TACGGAGAGACCATATGAAG+TGG 0.611492 5.2:-76749275 None:intergenic
CTAAAACAGTTATTCGGAGA+CGG 0.612457 5.2:-76748488 None:intergenic
AAGTTTGGCGAACTCAAGGG+TGG 0.616623 5.2:-76748448 None:intergenic
AATGGCCAACACCAGGAGAA+GGG 0.617006 5.2:-76748419 None:intergenic
TTTCTGAGCTTCAAGGTGAG+CGG 0.618759 5.2:-76748640 None:intergenic
AGAAACTGGATTAGTGTTTG+GGG 0.626301 5.2:-76748610 None:intergenic
TCCTTGCTTAGCAGGGAACG+AGG 0.628004 5.2:-76748931 None:intergenic
TTGGTTCTGATATCATCAAG+TGG 0.633590 5.2:+76749142 MS.gene48008:CDS
GAGTGAATCGGAGATTGGAA+GGG 0.633657 5.2:-76748556 None:intergenic
GGGGAAGAGAGCATTCTGGA+AGG 0.637308 5.2:-76748590 None:intergenic
TTACCGATTATATATCCGGT+AGG 0.641951 5.2:+76749081 MS.gene48008:CDS
ACGGAGAGACCATATGAAGT+GGG 0.652719 5.2:-76749274 None:intergenic
GAAACTGGATTAGTGTTTGG+GGG 0.662025 5.2:-76748609 None:intergenic
AGGTCCTGAGCCCAAAACCA+AGG 0.674042 5.2:+76749113 MS.gene48008:CDS
GAAGATAAAGAGTCAAACCA+AGG 0.675239 5.2:-76748813 None:intergenic
GTGTGAGCTGAAGATTGCTG+TGG 0.687080 5.2:+76749569 MS.gene48008:CDS
GATTGCACTAGATTGTAGAG+TGG 0.690382 5.2:+76749593 MS.gene48008:CDS
TCGTACGGCAGAGATTGGAA+GGG 0.696478 5.2:+76749383 MS.gene48008:CDS
TGAAGATCTAGAATCACATG+CGG 0.703019 5.2:+76749023 MS.gene48008:CDS
GAAGCAAAGGAAAACTACCG+AGG 0.708832 5.2:-76749184 None:intergenic
ATTCTGGAAGGTTGATGACG+CGG 0.709338 5.2:-76748578 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACGACCTAAATAAT+TGG - chr5.2:76749769-76749788 None:intergenic 20.0%
!! AATTGATTATATTATGAACC+AGG + chr5.2:76749785-76749804 MS.gene48008:CDS 20.0%
! ATATGCTATTGAGAATAGTA+AGG + chr5.2:76749251-76749270 MS.gene48008:CDS 25.0%
! TGAATTTACTATGATTCCAT+CGG - chr5.2:76749001-76749020 None:intergenic 25.0%
! TGATGACTAAAACAGTTATT+CGG - chr5.2:76748497-76748516 None:intergenic 25.0%
!! AAGTTTACCGATTATATATC+CGG + chr5.2:76749077-76749096 MS.gene48008:CDS 25.0%
ACAAGATTGAGAAAGGAATA+AGG + chr5.2:76749652-76749671 MS.gene48008:CDS 30.0%
AGTAAGAAGACTTTGTTAGA+GGG + chr5.2:76749732-76749751 MS.gene48008:CDS 30.0%
AGTGTATACATCAATTTCAG+TGG - chr5.2:76748532-76748551 None:intergenic 30.0%
GGATCTTCTTCCAATTATTT+AGG + chr5.2:76749756-76749775 MS.gene48008:CDS 30.0%
TCCGAAGTTAAAAGATAGTT+AGG - chr5.2:76749633-76749652 None:intergenic 30.0%
TGAGTTTGAAGGAAACAAAT+TGG - chr5.2:76748908-76748927 None:intergenic 30.0%
!! AAGAAACTGGATTAGTGTTT+GGG - chr5.2:76748614-76748633 None:intergenic 30.0%
!! ATCGGTAAACTTGTTAATTC+AGG - chr5.2:76749069-76749088 None:intergenic 30.0%
!!! GCCTAACTATCTTTTAACTT+CGG + chr5.2:76749629-76749648 MS.gene48008:CDS 30.0%
AACGTATCTAACCTCATTAC+TGG + chr5.2:76748673-76748692 MS.gene48008:intron 35.0%
ATCACGGTTGATTAGAAGTT+TGG - chr5.2:76748466-76748485 None:intergenic 35.0%
CTAAAACAGTTATTCGGAGA+CGG - chr5.2:76748491-76748510 None:intergenic 35.0%
GAAGATAAAGAGTCAAACCA+AGG - chr5.2:76748816-76748835 None:intergenic 35.0%
GAGTAAGAAGACTTTGTTAG+AGG + chr5.2:76749731-76749750 MS.gene48008:CDS 35.0%
TAATTCAGGATGAGAGAAAG+AGG - chr5.2:76749055-76749074 None:intergenic 35.0%
TGAAGGATTCTTAGATCGTA+CGG + chr5.2:76749368-76749387 MS.gene48008:CDS 35.0%
! AATAAGGAGTGTGTTGGATA+AGG + chr5.2:76749668-76749687 MS.gene48008:CDS 35.0%
! GATTTGTTTCACATTGTGGT+TGG + chr5.2:76749457-76749476 MS.gene48008:intron 35.0%
! TCAGAAAGAGTGTAATCAGA+AGG - chr5.2:76749330-76749349 None:intergenic 35.0%
! TGAAGATCTAGAATCACATG+CGG + chr5.2:76749023-76749042 MS.gene48008:CDS 35.0%
! TTACCGATTATATATCCGGT+AGG + chr5.2:76749081-76749100 MS.gene48008:CDS 35.0%
! TTGTGTTCGATTTTACCTGA+AGG + chr5.2:76749351-76749370 MS.gene48008:CDS 35.0%
! TTTTGATGAGGATCAGGTTA+AGG + chr5.2:76749221-76749240 MS.gene48008:CDS 35.0%
!! AGAAACTGGATTAGTGTTTG+GGG - chr5.2:76748613-76748632 None:intergenic 35.0%
!! GAAGAAACTGGATTAGTGTT+TGG - chr5.2:76748615-76748634 None:intergenic 35.0%
!! TTGGTTCTGATATCATCAAG+TGG + chr5.2:76749142-76749161 MS.gene48008:CDS 35.0%
!!! AAGCAAAGGTTGTTTTGATG+AGG + chr5.2:76749209-76749228 MS.gene48008:CDS 35.0%
AAAGTATATGCTCTCGAGAG+TGG - chr5.2:76749487-76749506 None:intergenic 40.0%
AAGAAGACTTTGTTAGAGGG+AGG + chr5.2:76749735-76749754 MS.gene48008:CDS 40.0%
AAGTGAAGAAGACGAGTGTA+GGG - chr5.2:76748780-76748799 None:intergenic 40.0%
ACTCAAGGGTGGAAACTAAA+TGG - chr5.2:76748440-76748459 None:intergenic 40.0%
ACTTCGGACAAGATTGAGAA+AGG + chr5.2:76749645-76749664 MS.gene48008:CDS 40.0%
ATAGTAAGGCCCACTTCATA+TGG + chr5.2:76749265-76749284 MS.gene48008:CDS 40.0%
ATCAGAACCAACAATGTCCT+TGG - chr5.2:76749133-76749152 None:intergenic 40.0%
ATGTGAAACAAATCCTCCTG+TGG - chr5.2:76749451-76749470 None:intergenic 40.0%
CTCATTACTGGAGAAGAAAG+CGG + chr5.2:76748685-76748704 MS.gene48008:intron 40.0%
CTCTTTGGCAACATCAATCA+TGG - chr5.2:76748749-76748768 None:intergenic 40.0%
GAAACAAATTGGCGAAAGTC+GGG - chr5.2:76748897-76748916 None:intergenic 40.0%
GATTGCACTAGATTGTAGAG+TGG + chr5.2:76749593-76749612 MS.gene48008:CDS 40.0%
GGAAACAAATTGGCGAAAGT+CGG - chr5.2:76748898-76748917 None:intergenic 40.0%
GGTCCTACCGGATATATAAT+CGG - chr5.2:76749087-76749106 None:intergenic 40.0%
GGTTAGATACGTTTGACGTT+TGG - chr5.2:76748666-76748685 None:intergenic 40.0%
GTACGATCTAAGAATCCTTC+AGG - chr5.2:76749369-76749388 None:intergenic 40.0%
GTAGAGTGGAGTATAGTAGT+GGG + chr5.2:76749607-76749626 MS.gene48008:CDS 40.0%
TAGAAGTTTGGCGAACTCAA+GGG - chr5.2:76748454-76748473 None:intergenic 40.0%
TGATGATCAACCTCTTTCCT+CGG + chr5.2:76749167-76749186 MS.gene48008:CDS 40.0%
TGTAGAGTGGAGTATAGTAG+TGG + chr5.2:76749606-76749625 MS.gene48008:CDS 40.0%
TTAGAAGTTTGGCGAACTCA+AGG - chr5.2:76748455-76748474 None:intergenic 40.0%
! ACCAACAATGTCCTTGGTTT+TGG - chr5.2:76749127-76749146 None:intergenic 40.0%
! ACTCTCGAGAGCATATACTT+TGG + chr5.2:76749486-76749505 MS.gene48008:intron 40.0%
! GAAAGGAATAAGGAGTGTGT+TGG + chr5.2:76749662-76749681 MS.gene48008:CDS 40.0%
! GGAGGATTTGTTTCACATTG+TGG + chr5.2:76749453-76749472 MS.gene48008:intron 40.0%
! TCGGTAGTTTTCCTTTGCTT+CGG + chr5.2:76749186-76749205 MS.gene48008:CDS 40.0%
! TGGGATAGTATTTGGGTTTG+TGG - chr5.2:76749423-76749442 None:intergenic 40.0%
!! CCAACAATGTCCTTGGTTTT+GGG - chr5.2:76749126-76749145 None:intergenic 40.0%
!! GAAACTGGATTAGTGTTTGG+GGG - chr5.2:76748612-76748631 None:intergenic 40.0%
!! GCAGGTTACTGCTTTTGAAT+TGG + chr5.2:76749545-76749564 MS.gene48008:intron 40.0%
!! GTTTTCAAGAGCTATGCAAG+AGG + chr5.2:76748964-76748983 MS.gene48008:CDS 40.0%
!!! AGGTTGTTTTGATGAGGATC+AGG + chr5.2:76749215-76749234 MS.gene48008:CDS 40.0%
AAAGAGTGGCCATGTTGCAA+TGG - chr5.2:76749517-76749536 None:intergenic 45.0%
AACATCAATCATGGCTGTGC+AGG - chr5.2:76748740-76748759 None:intergenic 45.0%
AACCTTTGCTTCCGAAGCAA+AGG - chr5.2:76749200-76749219 None:intergenic 45.0%
AAGAGTGGCCATGTTGCAAT+GGG - chr5.2:76749516-76749535 None:intergenic 45.0%
ACATCAATTTCAGTGGCGTG+TGG - chr5.2:76748525-76748544 None:intergenic 45.0%
ACGGAGAGACCATATGAAGT+GGG - chr5.2:76749277-76749296 None:intergenic 45.0%
AGATTGGAAGGGTGATTGGT+TGG + chr5.2:76749394-76749413 MS.gene48008:intron 45.0%
AGGAAAACTACCGAGGAAAG+AGG - chr5.2:76749180-76749199 None:intergenic 45.0%
ATTCCCATTCCTTGCTTAGC+AGG - chr5.2:76748942-76748961 None:intergenic 45.0%
CAAACCAAGGAAAGCAACAC+TGG - chr5.2:76748803-76748822 None:intergenic 45.0%
CATCAATTTCAGTGGCGTGT+GGG - chr5.2:76748524-76748543 None:intergenic 45.0%
CCCAAAACCAAGGACATTGT+TGG + chr5.2:76749123-76749142 MS.gene48008:CDS 45.0%
CGCTTTCTTCTCCAGTAATG+AGG - chr5.2:76748687-76748706 None:intergenic 45.0%
GAAACTAAATGGCCAACACC+AGG - chr5.2:76748429-76748448 None:intergenic 45.0%
GAACGAGGCAATGAGTTTGA+AGG - chr5.2:76748919-76748938 None:intergenic 45.0%
GAAGCAAAGGAAAACTACCG+AGG - chr5.2:76749187-76749206 None:intergenic 45.0%
GAAGTGAAGAAGACGAGTGT+AGG - chr5.2:76748781-76748800 None:intergenic 45.0%
GAGTGAATCGGAGATTGGAA+GGG - chr5.2:76748559-76748578 None:intergenic 45.0%
GCTAAGCAAGGAATGGGAAT+CGG + chr5.2:76748942-76748961 MS.gene48008:CDS 45.0%
GGCTGGATGGGATAGTATTT+GGG - chr5.2:76749430-76749449 None:intergenic 45.0%
TACGGAGAGACCATATGAAG+TGG - chr5.2:76749278-76749297 None:intergenic 45.0%
TATCCGGTAGGACCCATATT+AGG + chr5.2:76749093-76749112 MS.gene48008:CDS 45.0%
TGATTCCATCGGCATTCTTG+AGG - chr5.2:76748990-76749009 None:intergenic 45.0%
TGGATAAGGATGGAGAGTTC+AGG + chr5.2:76749682-76749701 MS.gene48008:CDS 45.0%
TGGCTGGATGGGATAGTATT+TGG - chr5.2:76749431-76749450 None:intergenic 45.0%
TGTAGGGATGGAGAACTCTT+TGG - chr5.2:76748764-76748783 None:intergenic 45.0%
TGTCAACAACGAAAGCAGCA+AGG - chr5.2:76748714-76748733 None:intergenic 45.0%
TTAGATCGTACGGCAGAGAT+TGG + chr5.2:76749378-76749397 MS.gene48008:CDS 45.0%
TTATTCGGAGACGGCTATCA+CGG - chr5.2:76748482-76748501 None:intergenic 45.0%
TTCCCATTCCTTGCTTAGCA+GGG - chr5.2:76748941-76748960 None:intergenic 45.0%
TTCCCTGCTAAGCAAGGAAT+GGG + chr5.2:76748936-76748955 MS.gene48008:CDS 45.0%
TTCCTTTGCTTCGGAAGCAA+AGG + chr5.2:76749195-76749214 MS.gene48008:CDS 45.0%
TTGGGCTCAGGACCTAATAT+GGG - chr5.2:76749108-76749127 None:intergenic 45.0%
TTTATCCCTTCTCCTGGTGT+TGG + chr5.2:76748414-76748433 MS.gene48008:CDS 45.0%
TTTCTGAGCTTCAAGGTGAG+CGG - chr5.2:76748643-76748662 None:intergenic 45.0%
TTTGGGCTCAGGACCTAATA+TGG - chr5.2:76749109-76749128 None:intergenic 45.0%
! AGGAGTGTGTTGGATAAGGA+TGG + chr5.2:76749672-76749691 MS.gene48008:CDS 45.0%
! CGTTTGGTTTCTGAGCTTCA+AGG - chr5.2:76748650-76748669 None:intergenic 45.0%
! GATTGGAAGGGTGATTGGTT+GGG + chr5.2:76749395-76749414 MS.gene48008:intron 45.0%
!! ACTTCCAGTGTTGCTTTCCT+TGG + chr5.2:76748796-76748815 MS.gene48008:CDS 45.0%
!! ATTCTGGAAGGTTGATGACG+CGG - chr5.2:76748581-76748600 None:intergenic 45.0%
AAATCCTCCTGTGGCTGGAT+GGG - chr5.2:76749442-76749461 None:intergenic 50.0%
AAATGGCCAACACCAGGAGA+AGG - chr5.2:76748423-76748442 None:intergenic 50.0%
AAGTTTGGCGAACTCAAGGG+TGG - chr5.2:76748451-76748470 None:intergenic 50.0%
AATGGCCAACACCAGGAGAA+GGG - chr5.2:76748422-76748441 None:intergenic 50.0%
ACCTGCTCTTCAGCAAAGAG+TGG - chr5.2:76749531-76749550 None:intergenic 50.0%
ATACTATCCCATCCAGCCAC+AGG + chr5.2:76749432-76749451 MS.gene48008:intron 50.0%
ATCGTACGGCAGAGATTGGA+AGG + chr5.2:76749382-76749401 MS.gene48008:CDS 50.0%
CAAATTGGCGAAAGTCGGGA+TGG - chr5.2:76748893-76748912 None:intergenic 50.0%
GAAACAAATCCTCCTGTGGC+TGG - chr5.2:76749447-76749466 None:intergenic 50.0%
GAAGAAGACGAGTGTAGGGA+TGG - chr5.2:76748776-76748795 None:intergenic 50.0%
GCAGAGATTGGAAGGGTGAT+TGG + chr5.2:76749390-76749409 MS.gene48008:intron 50.0%
GGACCTAATATGGGTCCTAC+CGG - chr5.2:76749099-76749118 None:intergenic 50.0%
GGAGTGAATCGGAGATTGGA+AGG - chr5.2:76748560-76748579 None:intergenic 50.0%
GTGGTGTTTATCCCTTCTCC+TGG + chr5.2:76748408-76748427 MS.gene48008:CDS 50.0%
GTGTGAGCTGAAGATTGCTG+TGG + chr5.2:76749569-76749588 MS.gene48008:CDS 50.0%
GTTCCCTGCTAAGCAAGGAA+TGG + chr5.2:76748935-76748954 MS.gene48008:CDS 50.0%
TCGTACGGCAGAGATTGGAA+GGG + chr5.2:76749383-76749402 MS.gene48008:CDS 50.0%
TGAGCGGACATGGAAGAAAC+TGG - chr5.2:76748627-76748646 None:intergenic 50.0%
TTGGTGTGCCCATTGCAACA+TGG + chr5.2:76749505-76749524 MS.gene48008:intron 50.0%
!! GTTGATGACGCGGAGTGAAT+CGG - chr5.2:76748571-76748590 None:intergenic 50.0%
!! TTTGGGGGAAGAGAGCATTC+TGG - chr5.2:76748597-76748616 None:intergenic 50.0%
!!! ATGTCCTTGGTTTTGGGCTC+AGG - chr5.2:76749120-76749139 None:intergenic 50.0%
ACGCGGAGTGAATCGGAGAT+TGG - chr5.2:76748564-76748583 None:intergenic 55.0%
AGAGGCCTCAAGAATGCCGA+TGG + chr5.2:76748982-76749001 MS.gene48008:CDS 55.0%
AGCTTCAAGGTGAGCGGACA+TGG - chr5.2:76748637-76748656 None:intergenic 55.0%
AGGTCCTGAGCCCAAAACCA+AGG + chr5.2:76749113-76749132 MS.gene48008:CDS 55.0%
CAAATCCTCCTGTGGCTGGA+TGG - chr5.2:76749443-76749462 None:intergenic 55.0%
CTCCGTAAACCTGCACCGAA+GGG + chr5.2:76749291-76749310 MS.gene48008:CDS 55.0%
GCCACTCTTTGCTGAAGAGC+AGG + chr5.2:76749527-76749546 MS.gene48008:intron 55.0%
TCCTTGCTTAGCAGGGAACG+AGG - chr5.2:76748934-76748953 None:intergenic 55.0%
TCTCCGTAAACCTGCACCGA+AGG + chr5.2:76749290-76749309 MS.gene48008:CDS 55.0%
! CACCCTTCGGTGCAGGTTTA+CGG - chr5.2:76749296-76749315 None:intergenic 55.0%
! GTAATCAGAAGGTGCAGCCC+TGG - chr5.2:76749319-76749338 None:intergenic 55.0%
!! GGGGAAGAGAGCATTCTGGA+AGG - chr5.2:76748593-76748612 None:intergenic 55.0%
CTATCCCATCCAGCCACAGG+AGG + chr5.2:76749435-76749454 MS.gene48008:intron 60.0%
GCCTCGTTCCCTGCTAAGCA+AGG + chr5.2:76748930-76748949 MS.gene48008:CDS 60.0%
!! AACCTGCACCGAAGGGTGCC+AGG + chr5.2:76749298-76749317 MS.gene48008:CDS 65.0%
!! ACCTGCACCGAAGGGTGCCA+GGG + chr5.2:76749299-76749318 MS.gene48008:CDS 65.0%
GGTGCAGCCCTGGCACCCTT+CGG - chr5.2:76749309-76749328 None:intergenic 70.0%
! GCCCTGGCACCCTTCGGTGC+AGG - chr5.2:76749303-76749322 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 76748393 76749818 76748393 ID=MS.gene48008
chr5.2 mRNA 76748393 76749818 76748393 ID=MS.gene48008.t1;Parent=MS.gene48008
chr5.2 exon 76748393 76748675 76748393 ID=MS.gene48008.t1.exon1;Parent=MS.gene48008.t1
chr5.2 CDS 76748393 76748675 76748393 ID=cds.MS.gene48008.t1;Parent=MS.gene48008.t1
chr5.2 exon 76748746 76749404 76748746 ID=MS.gene48008.t1.exon2;Parent=MS.gene48008.t1
chr5.2 CDS 76748746 76749404 76748746 ID=cds.MS.gene48008.t1;Parent=MS.gene48008.t1
chr5.2 exon 76749549 76749818 76749549 ID=MS.gene48008.t1.exon3;Parent=MS.gene48008.t1
chr5.2 CDS 76749549 76749818 76749549 ID=cds.MS.gene48008.t1;Parent=MS.gene48008.t1
Gene Sequence

>MS.gene48008

ATGAAGAAAGCAGAAGTGGTGTTTATCCCTTCTCCTGGTGTTGGCCATTTAGTTTCCACCCTTGAGTTCGCCAAACTTCTAATCAACCGTGATAGCCGTCTCCGAATAACTGTTTTAGTCATCAAATTCCCACACGCCACTGAAATTGATGTATACACTAAATCCCTTCCAATCTCCGATTCACTCCGCGTCATCAACCTTCCAGAATGCTCTCTTCCCCCAAACACTAATCCAGTTTCTTCCATGTCCGCTCACCTTGAAGCTCAGAAACCAAACGTCAAACGTATCTAACCTCATTACTGGAGAAGAAAGCGGAGTCCTTGCTGCTTTCGTTGTTGACATGTCCTGCACAGCCATGATTGATGTTGCCAAAGAGTTCTCCATCCCTACACTCGTCTTCTTCACTTCCAGTGTTGCTTTCCTTGGTTTGACTCTTTATCTTCACAATCTGTTTGAACAAATAGATTCAACTCAGTTGCTGCAGCAGAACGAGTTAGCCATCCCGACTTTCGCCAATTTGTTTCCTTCAAACTCATTGCCTCGTTCCCTGCTAAGCAAGGAATGGGAATCGGTTTTCAAGAGCTATGCAAGAGGCCTCAAGAATGCCGATGGAATCATAGTAAATTCATTTGAAGATCTAGAATCACATGCGGTTCAGTCCTCTTTCTCTCATCCTGAATTAACAAGTTTACCGATTATATATCCGGTAGGACCCATATTAGGTCCTGAGCCCAAAACCAAGGACATTGTTGGTTCTGATATCATCAAGTGGCTTGATGATCAACCTCTTTCCTCGGTAGTTTTCCTTTGCTTCGGAAGCAAAGGTTGTTTTGATGAGGATCAGGTTAAGGAGATCGCATATGCTATTGAGAATAGTAAGGCCCACTTCATATGGTCTCTCCGTAAACCTGCACCGAAGGGTGCCAGGGCTGCACCTTCTGATTACACTCTTTCTGATTTGTGTTCGATTTTACCTGAAGGATTCTTAGATCGTACGGCAGAGATTGGAAGGGTGATTGGTTGGGCTCCACAAACCCAAATACTATCCCATCCAGCCACAGGAGGATTTGTTTCACATTGTGGTTGGAATTCCACTCTCGAGAGCATATACTTTGGTGTGCCCATTGCAACATGGCCACTCTTTGCTGAAGAGCAGGTTACTGCTTTTGAATTGGTGTGTGAGCTGAAGATTGCTGTGGAGATTGCACTAGATTGTAGAGTGGAGTATAGTAGTGGGCCTAACTATCTTTTAACTTCGGACAAGATTGAGAAAGGAATAAGGAGTGTGTTGGATAAGGATGGAGAGTTCAGGAAAAAAGTGAAAGAGATGAGTGAAAAGAGTAAGAAGACTTTGTTAGAGGGAGGATCTTCTTCCAATTATTTAGGTCGTTTAATTGATTATATTATGAACCAGGTATCAAATTAA
Protein sequence

>MS.gene48008.t1

MKKAEVVFIPSPGVGHLVSTLEFAKLLINRDSRLRITVLVIKFPHATEIDVYTKSLPISDSLRVINLPECSLPPNTNPVSSMSAHLEAQKPNVKPMIDVAKEFSIPTLVFFTSSVAFLGLTLYLHNLFEQIDSTQLLQQNELAIPTFANLFPSNSLPRSLLSKEWESVFKSYARGLKNADGIIVNSFEDLESHAVQSSFSHPELTSLPIIYPVGPILGPEPKTKDIVGSDIIKWLDDQPLSSVVFLCFGSKGCFDEDQVKEIAYAIENSKAHFIWSLRKPAPKGARAAPSDYTLSDLCSILPEGFLDRTAEIGRVTAFELVCELKIAVEIALDCRVEYSSGPNYLLTSDKIEKGIRSVLDKDGEFRKKVKEMSEKSKKTLLEGGSSSNYLGRLIDYIMNQVSN