Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61665.t1 | XP_003588697.1 | 98 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 8.70E-241 | 842.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61665.t1 | Q9LFM5 | 71.6 | 398 | 107 | 2 | 11 | 404 | 12 | 407 | 4.4e-169 | 595.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61665.t1 | G7I6C3 | 98.0 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 6.3e-241 | 842.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene61665 | 0.852715 | 3.85E-61 | -1.69E-46 |
| MS.gene050100 | MS.gene61665 | 0.81308 | 3.07E-51 | -1.69E-46 |
| MS.gene050298 | MS.gene61665 | 0.855294 | 6.95E-62 | -1.69E-46 |
| MS.gene050563 | MS.gene61665 | 0.904531 | 1.11E-79 | -1.69E-46 |
| MS.gene050584 | MS.gene61665 | 0.816204 | 6.24E-52 | -1.69E-46 |
| MS.gene050585 | MS.gene61665 | 0.811064 | 8.44E-51 | -1.69E-46 |
| MS.gene050587 | MS.gene61665 | 0.81039 | 1.18E-50 | -1.69E-46 |
| MS.gene051199 | MS.gene61665 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene05143 | MS.gene61665 | 0.843525 | 1.33E-58 | -1.69E-46 |
| MS.gene052142 | MS.gene61665 | 0.846476 | 2.12E-59 | -1.69E-46 |
| MS.gene052456 | MS.gene61665 | 0.840304 | 9.42E-58 | -1.69E-46 |
| MS.gene053383 | MS.gene61665 | 0.895478 | 9.23E-76 | -1.69E-46 |
| MS.gene05456 | MS.gene61665 | 0.876734 | 1.10E-68 | -1.69E-46 |
| MS.gene054791 | MS.gene61665 | 0.814708 | 1.34E-51 | -1.69E-46 |
| MS.gene055359 | MS.gene61665 | 0.878758 | 2.17E-69 | -1.69E-46 |
| MS.gene057022 | MS.gene61665 | 0.817388 | 3.38E-52 | -1.69E-46 |
| MS.gene057881 | MS.gene61665 | 0.805748 | 1.15E-49 | -1.69E-46 |
| MS.gene058918 | MS.gene61665 | 0.850995 | 1.18E-60 | -1.69E-46 |
| MS.gene059006 | MS.gene61665 | 0.85067 | 1.46E-60 | -1.69E-46 |
| MS.gene059632 | MS.gene61665 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene059768 | MS.gene61665 | 0.861125 | 1.28E-63 | -1.69E-46 |
| MS.gene060691 | MS.gene61665 | 0.866468 | 2.79E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61665 | MS.gene44332 | PPI |
| MS.gene61665 | MS.gene061851 | PPI |
| MS.gene61665 | MS.gene31616 | PPI |
| MS.gene61665 | MS.gene29205 | PPI |
| MS.gene031178 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene054944 | PPI |
| MS.gene64265 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene56048 | PPI |
| MS.gene36879 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene018590 | PPI |
| MS.gene61665 | MS.gene57685 | PPI |
| MS.gene059027 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene064951 | PPI |
| MS.gene049295 | MS.gene61665 | PPI |
| MS.gene019484 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene44331 | PPI |
| MS.gene61665 | MS.gene86173 | PPI |
| MS.gene61665 | MS.gene32792 | PPI |
| MS.gene027681 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene059136 | PPI |
| MS.gene24021 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene06418 | PPI |
| MS.gene61665 | MS.gene021474 | PPI |
| MS.gene61665 | MS.gene53594 | PPI |
| MS.gene61665 | MS.gene038029 | PPI |
| MS.gene61665 | MS.gene014685 | PPI |
| MS.gene23537 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene09884 | PPI |
| MS.gene61665 | MS.gene40340 | PPI |
| MS.gene94810 | MS.gene61665 | PPI |
| MS.gene61665 | MS.gene013322 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61665.t1 | MTR_1g011630 | 98.030 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 0.0 | 835 |
| MS.gene61665.t1 | MTR_6g086870 | 60.668 | 389 | 145 | 2 | 13 | 393 | 17 | 405 | 0.0 | 514 |
| MS.gene61665.t1 | MTR_7g099330 | 58.005 | 381 | 157 | 2 | 9 | 388 | 17 | 395 | 1.74e-177 | 501 |
| MS.gene61665.t1 | MTR_1g008380 | 62.078 | 385 | 142 | 2 | 9 | 389 | 35 | 419 | 2.55e-177 | 501 |
| MS.gene61665.t1 | MTR_1g069275 | 57.360 | 394 | 164 | 3 | 9 | 398 | 18 | 411 | 2.96e-175 | 496 |
| MS.gene61665.t1 | MTR_1g046230 | 57.216 | 388 | 160 | 1 | 7 | 388 | 15 | 402 | 8.58e-175 | 494 |
| MS.gene61665.t1 | MTR_3g109520 | 59.788 | 378 | 147 | 3 | 11 | 383 | 34 | 411 | 6.52e-171 | 484 |
| MS.gene61665.t1 | MTR_7g099160 | 54.575 | 306 | 136 | 2 | 84 | 388 | 213 | 516 | 7.78e-125 | 371 |
| MS.gene61665.t1 | MTR_7g107710 | 44.652 | 374 | 196 | 5 | 17 | 384 | 7 | 375 | 1.13e-114 | 340 |
| MS.gene61665.t1 | MTR_8g432640 | 45.213 | 376 | 195 | 4 | 17 | 386 | 7 | 377 | 1.19e-114 | 340 |
| MS.gene61665.t1 | MTR_7g107690 | 42.632 | 380 | 207 | 4 | 17 | 390 | 9 | 383 | 6.72e-113 | 335 |
| MS.gene61665.t1 | MTR_5g033260 | 44.032 | 377 | 200 | 5 | 17 | 387 | 7 | 378 | 3.39e-112 | 334 |
| MS.gene61665.t1 | MTR_3g088925 | 42.278 | 395 | 216 | 5 | 17 | 404 | 8 | 397 | 5.74e-112 | 333 |
| MS.gene61665.t1 | MTR_3g088945 | 42.932 | 382 | 207 | 4 | 17 | 392 | 8 | 384 | 1.53e-111 | 332 |
| MS.gene61665.t1 | MTR_3g088955 | 41.519 | 395 | 219 | 5 | 17 | 404 | 8 | 397 | 3.50e-109 | 327 |
| MS.gene61665.t1 | MTR_4g051642 | 41.711 | 374 | 206 | 5 | 17 | 384 | 8 | 375 | 3.27e-105 | 317 |
| MS.gene61665.t1 | MTR_3g096030 | 35.795 | 176 | 85 | 3 | 17 | 188 | 7 | 158 | 2.85e-36 | 130 |
| MS.gene61665.t1 | MTR_8g037880 | 24.545 | 220 | 135 | 7 | 18 | 208 | 6 | 223 | 6.59e-17 | 82.4 |
| MS.gene61665.t1 | MTR_8g037910 | 23.558 | 208 | 129 | 6 | 18 | 197 | 6 | 211 | 2.35e-14 | 73.2 |
| MS.gene61665.t1 | MTR_2g450510 | 25.098 | 255 | 142 | 12 | 18 | 230 | 7 | 254 | 2.53e-14 | 75.1 |
| MS.gene61665.t1 | MTR_8g037910 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 3.81e-14 | 73.2 |
| MS.gene61665.t1 | MTR_8g037910 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 8.08e-14 | 73.2 |
| MS.gene61665.t1 | MTR_2g450310 | 26.772 | 254 | 137 | 11 | 18 | 229 | 7 | 253 | 9.26e-14 | 73.2 |
| MS.gene61665.t1 | MTR_4g124800 | 25.000 | 356 | 188 | 18 | 40 | 325 | 38 | 384 | 3.29e-12 | 68.6 |
| MS.gene61665.t1 | MTR_2g020630 | 25.726 | 241 | 132 | 10 | 18 | 215 | 16 | 252 | 1.82e-11 | 66.2 |
| MS.gene61665.t1 | MTR_3g437580 | 20.961 | 229 | 144 | 6 | 18 | 209 | 15 | 243 | 7.51e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61665.t1 | AT5G11320 | 71.788 | 397 | 106 | 2 | 11 | 403 | 12 | 406 | 0.0 | 599 |
| MS.gene61665.t1 | AT4G32540 | 63.000 | 400 | 143 | 3 | 11 | 406 | 16 | 414 | 0.0 | 551 |
| MS.gene61665.t1 | AT4G32540 | 62.935 | 402 | 142 | 4 | 11 | 406 | 16 | 416 | 0.0 | 546 |
| MS.gene61665.t1 | AT5G11320 | 72.531 | 324 | 87 | 1 | 11 | 334 | 12 | 333 | 7.27e-178 | 499 |
| MS.gene61665.t1 | AT4G13260 | 60.256 | 390 | 150 | 2 | 2 | 386 | 14 | 403 | 4.17e-177 | 500 |
| MS.gene61665.t1 | AT1G04610 | 57.364 | 387 | 158 | 1 | 9 | 388 | 30 | 416 | 1.37e-174 | 494 |
| MS.gene61665.t1 | AT1G04180 | 57.990 | 388 | 159 | 3 | 4 | 388 | 14 | 400 | 2.27e-173 | 491 |
| MS.gene61665.t1 | AT5G43890 | 55.527 | 389 | 167 | 2 | 6 | 388 | 15 | 403 | 8.07e-171 | 484 |
| MS.gene61665.t1 | AT4G28720 | 56.072 | 387 | 163 | 2 | 9 | 388 | 18 | 404 | 1.42e-169 | 481 |
| MS.gene61665.t1 | AT5G25620 | 58.312 | 391 | 157 | 4 | 10 | 395 | 27 | 416 | 8.00e-169 | 480 |
| MS.gene61665.t1 | AT5G25620 | 59.115 | 384 | 151 | 4 | 10 | 388 | 27 | 409 | 2.04e-168 | 478 |
| MS.gene61665.t1 | AT2G33230 | 57.106 | 387 | 158 | 2 | 9 | 388 | 25 | 410 | 5.56e-167 | 475 |
| MS.gene61665.t1 | AT4G13260 | 60.269 | 297 | 114 | 1 | 2 | 294 | 14 | 310 | 1.21e-136 | 393 |
| MS.gene61665.t1 | AT4G13260 | 57.931 | 290 | 117 | 2 | 102 | 386 | 11 | 300 | 7.18e-117 | 343 |
| MS.gene61665.t1 | AT1G21430 | 44.892 | 372 | 195 | 4 | 17 | 383 | 10 | 376 | 3.35e-116 | 344 |
| MS.gene61665.t1 | AT1G48910 | 42.820 | 383 | 206 | 5 | 17 | 392 | 6 | 382 | 8.00e-115 | 340 |
| MS.gene61665.t1 | AT1G19250 | 24.181 | 397 | 209 | 16 | 18 | 334 | 15 | 399 | 1.03e-15 | 79.3 |
| MS.gene61665.t1 | AT1G65860 | 24.336 | 226 | 135 | 8 | 18 | 210 | 15 | 237 | 1.51e-12 | 69.3 |
| MS.gene61665.t1 | AT5G07800 | 21.739 | 230 | 142 | 6 | 18 | 209 | 18 | 247 | 2.43e-12 | 68.6 |
| MS.gene61665.t1 | AT1G62560 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 8.24e-12 | 67.0 |
| MS.gene61665.t1 | AT1G62560 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 1.09e-11 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAAATT+TGG | 0.134264 | 1.3:+9416492 | MS.gene61665:CDS |
| GTCATTGGTTGTGGGAATTC+TGG | 0.224967 | 1.3:+9416692 | MS.gene61665:CDS |
| TTCTGGAATGGAAGTTAGTT+TGG | 0.279463 | 1.3:+9416709 | MS.gene61665:CDS |
| GTTAGTTTCAAGCTTCTTCT+TGG | 0.280395 | 1.3:+9417658 | MS.gene61665:CDS |
| TAGCTATGGGATTATATAAA+TGG | 0.285172 | 1.3:+9417603 | MS.gene61665:CDS |
| AATTAAATCCGGTAACATTA+AGG | 0.303146 | 1.3:+9417784 | MS.gene61665:CDS |
| GTTGCAAGTTTGAGTTCTAT+TGG | 0.313027 | 1.3:-9417722 | None:intergenic |
| ATGTTTGGTTTCTCAACATA+TGG | 0.323559 | 1.3:+9417578 | MS.gene61665:CDS |
| CATACAAGTGATTATAAATC+TGG | 0.355020 | 1.3:+9416641 | MS.gene61665:CDS |
| GATGCAATAATCTTAGCAAC+AGG | 0.380414 | 1.3:+9417979 | MS.gene61665:CDS |
| TAATCACTTGTATGAGCAAC+AGG | 0.388008 | 1.3:-9416632 | None:intergenic |
| GCAAAGTGTGTATGGATTCA+TGG | 0.396734 | 1.3:+9416170 | MS.gene61665:CDS |
| GTAACATACCTTAATGTTAC+CGG | 0.400738 | 1.3:-9417792 | None:intergenic |
| ATAGTAGGTGCTGGTCCTTC+AGG | 0.401110 | 1.3:+9416200 | MS.gene61665:CDS |
| ACACAATGCTATGCCTCATT+TGG | 0.405714 | 1.3:+9416742 | MS.gene61665:CDS |
| CCTTGGCTTATTGTTGCTAC+TGG | 0.412409 | 1.3:+9416554 | MS.gene61665:CDS |
| TTAGTTTCAAGCTTCTTCTT+GGG | 0.427173 | 1.3:+9417659 | MS.gene61665:CDS |
| TGTTCCATACCATGAATTGT+TGG | 0.436540 | 1.3:-9416599 | None:intergenic |
| ATTCTTCCAAGAGATATGTT+TGG | 0.437726 | 1.3:+9417563 | MS.gene61665:CDS |
| GGTATCAAGAGGCCTAAAAC+TGG | 0.451158 | 1.3:+9417698 | MS.gene61665:CDS |
| ACAAGAGCAATGTGCCTACT+TGG | 0.453063 | 1.3:+9418004 | MS.gene61665:CDS |
| GGACCAGCACCTACTATGAT+AGG | 0.457137 | 1.3:-9416194 | None:intergenic |
| GTTTGAGGAAAACTCATCAT+AGG | 0.461046 | 1.3:-9416362 | None:intergenic |
| GAGAAACCAAACATATCTCT+TGG | 0.462714 | 1.3:-9417569 | None:intergenic |
| TTGGGAAACACCAATCACTA+TGG | 0.465852 | 1.3:+9417677 | MS.gene61665:CDS |
| ATAGAACTCAAACTTGCAAC+AGG | 0.466421 | 1.3:+9417725 | MS.gene61665:CDS |
| CAAATAGCACAAATTAAATC+CGG | 0.476052 | 1.3:+9417773 | MS.gene61665:CDS |
| CTGAAGATATTACTAATCAA+TGG | 0.476187 | 1.3:+9418679 | MS.gene61665:CDS |
| GTGAAAGAGATAACAAGAAA+TGG | 0.481980 | 1.3:+9417922 | MS.gene61665:CDS |
| GTGATTGCATAGCTTCACTA+TGG | 0.487978 | 1.3:+9416282 | MS.gene61665:CDS |
| ATCACTTTGATATTCATCCT+AGG | 0.490915 | 1.3:+9416441 | MS.gene61665:CDS |
| CCTCTTGATACCATAGTGAT+TGG | 0.496998 | 1.3:-9417687 | None:intergenic |
| CCCTTTCCTCATGGTTGGAA+AGG | 0.498580 | 1.3:+9418582 | MS.gene61665:CDS |
| CTCAACATATGGAATAGCTA+TGG | 0.500774 | 1.3:+9417589 | MS.gene61665:CDS |
| AAACACCCTTTCCTCATGGT+TGG | 0.503476 | 1.3:+9418577 | MS.gene61665:CDS |
| CCTTTCCAACCATGAGGAAA+GGG | 0.506085 | 1.3:-9418582 | None:intergenic |
| ACATCAGTTCATTTCCTACA+TGG | 0.512049 | 1.3:+9416406 | MS.gene61665:CDS |
| ATTCATGGACCTATCATAGT+AGG | 0.515217 | 1.3:+9416185 | MS.gene61665:CDS |
| TCAACATATGGAATAGCTAT+GGG | 0.521973 | 1.3:+9417590 | MS.gene61665:CDS |
| GAGTTTCGTGCAACCAAATG+AGG | 0.533241 | 1.3:-9416755 | None:intergenic |
| TTCAAGTTCTCAAATTTGGA+TGG | 0.536810 | 1.3:+9416496 | MS.gene61665:CDS |
| GGACCTATCATAGTAGGTGC+TGG | 0.547397 | 1.3:+9416191 | MS.gene61665:CDS |
| AAAACTCCTGTACTTGATGT+TGG | 0.551364 | 1.3:+9417749 | MS.gene61665:CDS |
| GGATACTTAGGAAATGTTTG+AGG | 0.552505 | 1.3:-9416377 | None:intergenic |
| ACCTTTCCAACCATGAGGAA+AGG | 0.554382 | 1.3:-9418583 | None:intergenic |
| GAGCAAGGATTGTATACAGT+GGG | 0.564264 | 1.3:+9418606 | MS.gene61665:CDS |
| CTTCTCTCAAGAATGAGACT+TGG | 0.577619 | 1.3:-9416260 | None:intergenic |
| TTCACAAGAAGAGGTCTACA+TGG | 0.580526 | 1.3:+9418630 | MS.gene61665:CDS |
| AATATCAAAGTGATCAGCAT+AGG | 0.584130 | 1.3:-9416432 | None:intergenic |
| ATTTGACCAACATCAAGTAC+AGG | 0.585749 | 1.3:-9417755 | None:intergenic |
| CAATGTGCCTACTTGGCTCA+AGG | 0.592907 | 1.3:+9418011 | MS.gene61665:CDS |
| AGAACAGTTTGATTAAACCT+AGG | 0.595686 | 1.3:-9416458 | None:intergenic |
| ACAGTGGGTTTCACAAGAAG+AGG | 0.597945 | 1.3:+9418621 | MS.gene61665:CDS |
| CATGGTTGGAAAGGTGAGCA+AGG | 0.614511 | 1.3:+9418591 | MS.gene61665:CDS |
| TGGTTGTGGGAATTCTGGAA+TGG | 0.619937 | 1.3:+9416697 | MS.gene61665:CDS |
| GCTGCTTGTTTATCAGAACA+AGG | 0.634289 | 1.3:+9416233 | MS.gene61665:CDS |
| TGCTCACCTTTCCAACCATG+AGG | 0.637968 | 1.3:-9418588 | None:intergenic |
| TTAATATTGTAGGTGATGGA+AGG | 0.640132 | 1.3:+9417898 | MS.gene61665:intron |
| CCAATCACTATGGTATCAAG+AGG | 0.641108 | 1.3:+9417687 | MS.gene61665:CDS |
| CCAGTAGCAACAATAAGCCA+AGG | 0.647996 | 1.3:-9416554 | None:intergenic |
| GCAGCTACTGCTATACCTGA+AGG | 0.661207 | 1.3:-9416215 | None:intergenic |
| ATGCAATAATCTTAGCAACA+GGG | 0.685349 | 1.3:+9417980 | MS.gene61665:CDS |
| ATCAGCATAGGATTCCATGT+AGG | 0.688016 | 1.3:-9416420 | None:intergenic |
| TGAGCAAGGATTGTATACAG+TGG | 0.697920 | 1.3:+9418605 | MS.gene61665:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAATAAATTTATT+AGG | + | chr1.3:9417820-9417839 | MS.gene61665:intron | 0.0% |
| !! | GATATTATAAAAAAAAAATG+CGG | + | chr1.3:9416825-9416844 | MS.gene61665:intron | 10.0% |
| !!! | ATTTTTTTTTTATTGATTCA+GGG | + | chr1.3:9418522-9418541 | MS.gene61665:intron | 10.0% |
| !!! | TATTTTTTTTTTATTGATTC+AGG | + | chr1.3:9418521-9418540 | MS.gene61665:intron | 10.0% |
| !!! | TTTGATATGTATATTTTTTT+AGG | + | chr1.3:9417855-9417874 | MS.gene61665:intron | 10.0% |
| !! | AAAGAAATATTAAATGATGA+AGG | - | chr1.3:9417161-9417180 | None:intergenic | 15.0% |
| !! | ATTATTAAAATTACCCAAAT+GGG | - | chr1.3:9417478-9417497 | None:intergenic | 15.0% |
| !!! | AAAGAATAGTACTTTTTAAA+AGG | - | chr1.3:9418398-9418417 | None:intergenic | 15.0% |
| !!! | AAGAATAGTACTTTTTAAAA+GGG | - | chr1.3:9418397-9418416 | None:intergenic | 15.0% |
| !!! | GCAATATTTTATATGATTTA+AGG | + | chr1.3:9417535-9417554 | MS.gene61665:intron | 15.0% |
| !! | AAAGAATAAAATCAGTTTCT+TGG | + | chr1.3:9418172-9418191 | MS.gene61665:intron | 20.0% |
| !! | AAATGACAATTAAAAAGGAA+CGG | + | chr1.3:9417292-9417311 | MS.gene61665:intron | 20.0% |
| !! | ATTGAAATTCGAAAGAAAAA+AGG | - | chr1.3:9416790-9416809 | None:intergenic | 20.0% |
| !! | ATTGTTTAGTACTTAAAATG+AGG | + | chr1.3:9417432-9417451 | MS.gene61665:intron | 20.0% |
| !! | GATTATTAAAATTACCCAAA+TGG | - | chr1.3:9417479-9417498 | None:intergenic | 20.0% |
| !! | TAAATAATCAAGGGTAATAA+AGG | + | chr1.3:9417201-9417220 | MS.gene61665:intron | 20.0% |
| !! | TTCTGAGTACAAAAATAAAA+AGG | + | chr1.3:9416664-9416683 | MS.gene61665:CDS | 20.0% |
| !! | TTGAAATTCGAAAGAAAAAA+GGG | - | chr1.3:9416789-9416808 | None:intergenic | 20.0% |
| !!! | AACTTGTCTACTAATTTTAA+TGG | - | chr1.3:9417632-9417651 | None:intergenic | 20.0% |
| !!! | AATGATTTTTTCACTAAAGA+TGG | + | chr1.3:9418546-9418565 | MS.gene61665:CDS | 20.0% |
| !!! | ATAAAACAGTACTAAACTTT+TGG | + | chr1.3:9418423-9418442 | MS.gene61665:intron | 20.0% |
| !!! | ATATGTTATTTTTTCCCATT+TGG | + | chr1.3:9417461-9417480 | MS.gene61665:intron | 20.0% |
| !!! | GTACAAAAATAAAAAGGTTT+TGG | + | chr1.3:9416670-9416689 | MS.gene61665:CDS | 20.0% |
| !!! | TAGGTAAATGAAGTTTTAAA+CGG | - | chr1.3:9416325-9416344 | None:intergenic | 20.0% |
| !!! | TATGTATATTTTTTTAGGCT+AGG | + | chr1.3:9417860-9417879 | MS.gene61665:intron | 20.0% |
| !!! | TATGTTATTTTTTCCCATTT+GGG | + | chr1.3:9417462-9417481 | MS.gene61665:intron | 20.0% |
| ! | AAAAAAAATGCGGTTTAATG+TGG | + | chr1.3:9416835-9416854 | MS.gene61665:intron | 25.0% |
| ! | AAAATCACGACAAAAAAAGA+TGG | - | chr1.3:9416988-9417007 | None:intergenic | 25.0% |
| ! | AATTAAATCCGGTAACATTA+AGG | + | chr1.3:9417784-9417803 | MS.gene61665:CDS | 25.0% |
| ! | CAAATAGCACAAATTAAATC+CGG | + | chr1.3:9417773-9417792 | MS.gene61665:CDS | 25.0% |
| ! | CATACAAGTGATTATAAATC+TGG | + | chr1.3:9416641-9416660 | MS.gene61665:CDS | 25.0% |
| ! | CTGAAGATATTACTAATCAA+TGG | + | chr1.3:9418679-9418698 | MS.gene61665:CDS | 25.0% |
| ! | CTGCAAAATGACAATTAAAA+AGG | + | chr1.3:9417287-9417306 | MS.gene61665:intron | 25.0% |
| ! | TAGCTATGGGATTATATAAA+TGG | + | chr1.3:9417603-9417622 | MS.gene61665:CDS | 25.0% |
| ! | TCTCTGCAATAAATAATCAA+GGG | + | chr1.3:9417192-9417211 | MS.gene61665:intron | 25.0% |
| ! | TTAATACATGTTTCGATTCA+TGG | + | chr1.3:9416918-9416937 | MS.gene61665:intron | 25.0% |
| ! | TTGATTAATATTGTAGGTGA+TGG | + | chr1.3:9417894-9417913 | MS.gene61665:intron | 25.0% |
| ! | TTGGGATTGATTAATATTGT+AGG | + | chr1.3:9417888-9417907 | MS.gene61665:intron | 25.0% |
| ! | TTTAATAAGGTCACTCATAA+AGG | + | chr1.3:9417368-9417387 | MS.gene61665:intron | 25.0% |
| !! | AAGAAATGGTGCAAAATTTT+TGG | + | chr1.3:9417936-9417955 | MS.gene61665:CDS | 25.0% |
| !! | ATTTTCAGTATTTTTCACCT+TGG | + | chr1.3:9416537-9416556 | MS.gene61665:CDS | 25.0% |
| !! | TGTTTTTCTCTTCTTTTACA+TGG | + | chr1.3:9418487-9418506 | MS.gene61665:intron | 25.0% |
| !! | TTGATTCAAGTTCTCAAATT+TGG | + | chr1.3:9416492-9416511 | MS.gene61665:CDS | 25.0% |
| !!! | AATAAAAAGGTTTTGGTCAT+TGG | + | chr1.3:9416677-9416696 | MS.gene61665:CDS | 25.0% |
| !!! | AATATCTTCAGCTATTTTGA+TGG | - | chr1.3:9418670-9418689 | None:intergenic | 25.0% |
| !!! | TTTTTAGGCTAGGATTAATT+GGG | + | chr1.3:9417870-9417889 | MS.gene61665:intron | 25.0% |
| !!! | TTTTTTAGGCTAGGATTAAT+TGG | + | chr1.3:9417869-9417888 | MS.gene61665:intron | 25.0% |
| AAGAAAAAGCAAAGTGTGTA+TGG | + | chr1.3:9416162-9416181 | MS.gene61665:CDS | 30.0% | |
| AAGTGACCATTAAAAAGGAA+CGG | - | chr1.3:9417058-9417077 | None:intergenic | 30.0% | |
| AATATCAAAGTGATCAGCAT+AGG | - | chr1.3:9416435-9416454 | None:intergenic | 30.0% | |
| AGAACAGTTTGATTAAACCT+AGG | - | chr1.3:9416461-9416480 | None:intergenic | 30.0% | |
| ATCACTTTGATATTCATCCT+AGG | + | chr1.3:9416441-9416460 | MS.gene61665:CDS | 30.0% | |
| ATGCAATAATCTTAGCAACA+GGG | + | chr1.3:9417980-9417999 | MS.gene61665:CDS | 30.0% | |
| ATTCTTCCAAGAGATATGTT+TGG | + | chr1.3:9417563-9417582 | MS.gene61665:CDS | 30.0% | |
| CTCTCTGCAATAAATAATCA+AGG | + | chr1.3:9417191-9417210 | MS.gene61665:intron | 30.0% | |
| GGTAGTTCACAAAAATGTTT+AGG | - | chr1.3:9416344-9416363 | None:intergenic | 30.0% | |
| GTAACATACCTTAATGTTAC+CGG | - | chr1.3:9417795-9417814 | None:intergenic | 30.0% | |
| GTGAAAGAGATAACAAGAAA+TGG | + | chr1.3:9417922-9417941 | MS.gene61665:CDS | 30.0% | |
| TCAACATATGGAATAGCTAT+GGG | + | chr1.3:9417590-9417609 | MS.gene61665:CDS | 30.0% | |
| TTAGTTTCAAGCTTCTTCTT+GGG | + | chr1.3:9417659-9417678 | MS.gene61665:CDS | 30.0% | |
| ! | ATGTTTGGTTTCTCAACATA+TGG | + | chr1.3:9417578-9417597 | MS.gene61665:CDS | 30.0% |
| ! | GAAATGAACTGATGTTTTGT+AGG | - | chr1.3:9416401-9416420 | None:intergenic | 30.0% |
| ! | GATGGTTTTTGACAAAATTG+CGG | - | chr1.3:9416970-9416989 | None:intergenic | 30.0% |
| ! | TGATGTTTTGTAGGATACTT+AGG | - | chr1.3:9416392-9416411 | None:intergenic | 30.0% |
| ! | TTCAAGTTCTCAAATTTGGA+TGG | + | chr1.3:9416496-9416515 | MS.gene61665:CDS | 30.0% |
| ! | TTTTCCAACAATTCATGGTA+TGG | + | chr1.3:9416595-9416614 | MS.gene61665:CDS | 30.0% |
| !! | AATGGTGCAAAATTTTTGGA+TGG | + | chr1.3:9417940-9417959 | MS.gene61665:CDS | 30.0% |
| !! | ACTTGTGAGTTTGTTCTTTT+TGG | + | chr1.3:9417501-9417520 | MS.gene61665:intron | 30.0% |
| !! | ATTTTTGGATGGACAAGAAA+AGG | + | chr1.3:9417951-9417970 | MS.gene61665:CDS | 30.0% |
| !! | TAGCTAGAACTTTGAAATGA+CGG | - | chr1.3:9417021-9417040 | None:intergenic | 30.0% |
| !! | TCCTTTTTAATGGTCACTTT+TGG | + | chr1.3:9417059-9417078 | MS.gene61665:intron | 30.0% |
| !! | TTAATATTGTAGGTGATGGA+AGG | + | chr1.3:9417898-9417917 | MS.gene61665:intron | 30.0% |
| !!! | ATGAAGTTTTAAACGGTCAT+AGG | - | chr1.3:9416318-9416337 | None:intergenic | 30.0% |
| !!! | CACTTTGCTTTTTCTTTGAA+AGG | - | chr1.3:9416158-9416177 | None:intergenic | 30.0% |
| !!! | CCTTTTTAATGGTCACTTTT+GGG | + | chr1.3:9417060-9417079 | MS.gene61665:intron | 30.0% |
| !!! | TTGTTCTTTTTGGCTAACTT+TGG | + | chr1.3:9417511-9417530 | MS.gene61665:intron | 30.0% |
| AAAACTCCTGTACTTGATGT+TGG | + | chr1.3:9417749-9417768 | MS.gene61665:CDS | 35.0% | |
| ACATCAGTTCATTTCCTACA+TGG | + | chr1.3:9416406-9416425 | MS.gene61665:CDS | 35.0% | |
| ATAGAACTCAAACTTGCAAC+AGG | + | chr1.3:9417725-9417744 | MS.gene61665:CDS | 35.0% | |
| ATTCATGGACCTATCATAGT+AGG | + | chr1.3:9416185-9416204 | MS.gene61665:CDS | 35.0% | |
| ATTTGACCAACATCAAGTAC+AGG | - | chr1.3:9417758-9417777 | None:intergenic | 35.0% | |
| CCATGAATTGTTGGAAAAAC+AGG | - | chr1.3:9416593-9416612 | None:intergenic | 35.0% | |
| CCCAAAAGTGACCATTAAAA+AGG | - | chr1.3:9417063-9417082 | None:intergenic | 35.0% | |
| CTCAACATATGGAATAGCTA+TGG | + | chr1.3:9417589-9417608 | MS.gene61665:CDS | 35.0% | |
| CTTATGACCTATCACTATCT+AGG | + | chr1.3:9418087-9418106 | MS.gene61665:intron | 35.0% | |
| GACAATTAAAAAGGAACGGA+GGG | + | chr1.3:9417296-9417315 | MS.gene61665:intron | 35.0% | |
| GAGAAACCAAACATATCTCT+TGG | - | chr1.3:9417572-9417591 | None:intergenic | 35.0% | |
| GATGCAATAATCTTAGCAAC+AGG | + | chr1.3:9417979-9417998 | MS.gene61665:CDS | 35.0% | |
| GGATACTTAGGAAATGTTTG+AGG | - | chr1.3:9416380-9416399 | None:intergenic | 35.0% | |
| GTTTGAGGAAAACTCATCAT+AGG | - | chr1.3:9416365-9416384 | None:intergenic | 35.0% | |
| TAATCACTTGTATGAGCAAC+AGG | - | chr1.3:9416635-9416654 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | + | chr1.3:9417295-9417314 | MS.gene61665:intron | 35.0% | |
| TGTTCCATACCATGAATTGT+TGG | - | chr1.3:9416602-9416621 | None:intergenic | 35.0% | |
| TTTGACAAAATTGCGGTCAT+AGG | - | chr1.3:9416963-9416982 | None:intergenic | 35.0% | |
| ! | AGTTCTATTGGACCAGTTTT+AGG | - | chr1.3:9417713-9417732 | None:intergenic | 35.0% |
| ! | CACATCGATTAAAGATGCAT+CGG | - | chr1.3:9416861-9416880 | None:intergenic | 35.0% |
| ! | CATGGTATGGAACATTTTCA+TGG | + | chr1.3:9416608-9416627 | MS.gene61665:CDS | 35.0% |
| ! | GTTAGTTTCAAGCTTCTTCT+TGG | + | chr1.3:9417658-9417677 | MS.gene61665:CDS | 35.0% |
| ! | GTTGCAAGTTTGAGTTCTAT+TGG | - | chr1.3:9417725-9417744 | None:intergenic | 35.0% |
| ! | TTTTTAACCTTGAGCCAAGT+AGG | - | chr1.3:9418021-9418040 | None:intergenic | 35.0% |
| !! | CCTGTTTTTCCAACAATTCA+TGG | + | chr1.3:9416590-9416609 | MS.gene61665:CDS | 35.0% |
| !! | TTCTGGAATGGAAGTTAGTT+TGG | + | chr1.3:9416709-9416728 | MS.gene61665:CDS | 35.0% |
| ACACAATGCTATGCCTCATT+TGG | + | chr1.3:9416742-9416761 | MS.gene61665:CDS | 40.0% | |
| ACCTATCACTATCTAGGCTT+GGG | + | chr1.3:9418093-9418112 | MS.gene61665:intron | 40.0% | |
| ATCAGCATAGGATTCCATGT+AGG | - | chr1.3:9416423-9416442 | None:intergenic | 40.0% | |
| CCAATCACTATGGTATCAAG+AGG | + | chr1.3:9417687-9417706 | MS.gene61665:CDS | 40.0% | |
| CCTCTTGATACCATAGTGAT+TGG | - | chr1.3:9417690-9417709 | None:intergenic | 40.0% | |
| CTTCTCTCAAGAATGAGACT+TGG | - | chr1.3:9416263-9416282 | None:intergenic | 40.0% | |
| GAGCAAGGATTGTATACAGT+GGG | + | chr1.3:9418606-9418625 | MS.gene61665:CDS | 40.0% | |
| GCAAAGTGTGTATGGATTCA+TGG | + | chr1.3:9416170-9416189 | MS.gene61665:CDS | 40.0% | |
| GCTGCTTGTTTATCAGAACA+AGG | + | chr1.3:9416233-9416252 | MS.gene61665:CDS | 40.0% | |
| GTGATTGCATAGCTTCACTA+TGG | + | chr1.3:9416282-9416301 | MS.gene61665:CDS | 40.0% | |
| TGACCATTAAAAAGGAACGG+AGG | - | chr1.3:9417055-9417074 | None:intergenic | 40.0% | |
| TGAGCAAGGATTGTATACAG+TGG | + | chr1.3:9418605-9418624 | MS.gene61665:CDS | 40.0% | |
| TTCACAAGAAGAGGTCTACA+TGG | + | chr1.3:9418630-9418649 | MS.gene61665:CDS | 40.0% | |
| TTGGGAAACACCAATCACTA+TGG | + | chr1.3:9417677-9417696 | MS.gene61665:CDS | 40.0% | |
| ! | CTTCCTCCGTTCCTTTTTAA+TGG | + | chr1.3:9417049-9417068 | MS.gene61665:intron | 40.0% |
| !! | AAGGTTTTGGTCATTGGTTG+TGG | + | chr1.3:9416683-9416702 | MS.gene61665:CDS | 40.0% |
| !! | AGGTTTTGGTCATTGGTTGT+GGG | + | chr1.3:9416684-9416703 | MS.gene61665:CDS | 40.0% |
| AAACACCCTTTCCTCATGGT+TGG | + | chr1.3:9418577-9418596 | MS.gene61665:CDS | 45.0% | |
| ACAAGAGCAATGTGCCTACT+TGG | + | chr1.3:9418004-9418023 | MS.gene61665:CDS | 45.0% | |
| ACCTTTCCAACCATGAGGAA+AGG | - | chr1.3:9418586-9418605 | None:intergenic | 45.0% | |
| CCAAAAACACCCTTTCCTCA+TGG | + | chr1.3:9418573-9418592 | MS.gene61665:CDS | 45.0% | |
| CCAGTAGCAACAATAAGCCA+AGG | - | chr1.3:9416557-9416576 | None:intergenic | 45.0% | |
| CCTTGGCTTATTGTTGCTAC+TGG | + | chr1.3:9416554-9416573 | MS.gene61665:CDS | 45.0% | |
| CCTTTCCAACCATGAGGAAA+GGG | - | chr1.3:9418585-9418604 | None:intergenic | 45.0% | |
| GACCTATCACTATCTAGGCT+TGG | + | chr1.3:9418092-9418111 | MS.gene61665:intron | 45.0% | |
| GAGTTTCGTGCAACCAAATG+AGG | - | chr1.3:9416758-9416777 | None:intergenic | 45.0% | |
| GGTATCAAGAGGCCTAAAAC+TGG | + | chr1.3:9417698-9417717 | MS.gene61665:CDS | 45.0% | |
| TCCCAAGCCTAGATAGTGAT+AGG | - | chr1.3:9418097-9418116 | None:intergenic | 45.0% | |
| ! | ACAGTGGGTTTCACAAGAAG+AGG | + | chr1.3:9418621-9418640 | MS.gene61665:CDS | 45.0% |
| ! | GTCATTGGTTGTGGGAATTC+TGG | + | chr1.3:9416692-9416711 | MS.gene61665:CDS | 45.0% |
| ! | TGGTTGTGGGAATTCTGGAA+TGG | + | chr1.3:9416697-9416716 | MS.gene61665:CDS | 45.0% |
| !!! | CCATGAGGAAAGGGTGTTTT+TGG | - | chr1.3:9418576-9418595 | None:intergenic | 45.0% |
| !! | TATTTAAATATTAAAAAAAG+TGG | - | chr1.3:9418205-9418224 | None:intergenic | 5.0% |
| !!! | TTATATTAATACTTTTAATA+AGG | + | chr1.3:9417355-9417374 | MS.gene61665:intron | 5.0% |
| CAATGTGCCTACTTGGCTCA+AGG | + | chr1.3:9418011-9418030 | MS.gene61665:CDS | 50.0% | |
| CATGGTTGGAAAGGTGAGCA+AGG | + | chr1.3:9418591-9418610 | MS.gene61665:CDS | 50.0% | |
| CCCTTTCCTCATGGTTGGAA+AGG | + | chr1.3:9418582-9418601 | MS.gene61665:CDS | 50.0% | |
| GCAGCTACTGCTATACCTGA+AGG | - | chr1.3:9416218-9416237 | None:intergenic | 50.0% | |
| GGACCAGCACCTACTATGAT+AGG | - | chr1.3:9416197-9416216 | None:intergenic | 50.0% | |
| GGACCTATCATAGTAGGTGC+TGG | + | chr1.3:9416191-9416210 | MS.gene61665:CDS | 50.0% | |
| TGCTCACCTTTCCAACCATG+AGG | - | chr1.3:9418591-9418610 | None:intergenic | 50.0% | |
| !! | ATAGTAGGTGCTGGTCCTTC+AGG | + | chr1.3:9416200-9416219 | MS.gene61665:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9416149 | 9418761 | 9416149 | ID=MS.gene61665 |
| chr1.3 | mRNA | 9416149 | 9418761 | 9416149 | ID=MS.gene61665.t1;Parent=MS.gene61665 |
| chr1.3 | exon | 9416149 | 9416778 | 9416149 | ID=MS.gene61665.t1.exon1;Parent=MS.gene61665.t1 |
| chr1.3 | CDS | 9416149 | 9416778 | 9416149 | ID=cds.MS.gene61665.t1;Parent=MS.gene61665.t1 |
| chr1.3 | exon | 9417557 | 9417805 | 9417557 | ID=MS.gene61665.t1.exon2;Parent=MS.gene61665.t1 |
| chr1.3 | CDS | 9417557 | 9417805 | 9417557 | ID=cds.MS.gene61665.t1;Parent=MS.gene61665.t1 |
| chr1.3 | exon | 9417910 | 9418032 | 9417910 | ID=MS.gene61665.t1.exon3;Parent=MS.gene61665.t1 |
| chr1.3 | CDS | 9417910 | 9418032 | 9417910 | ID=cds.MS.gene61665.t1;Parent=MS.gene61665.t1 |
| chr1.3 | exon | 9418543 | 9418761 | 9418543 | ID=MS.gene61665.t1.exon4;Parent=MS.gene61665.t1 |
| chr1.3 | CDS | 9418543 | 9418761 | 9418543 | ID=cds.MS.gene61665.t1;Parent=MS.gene61665.t1 |
| Gene Sequence |
| Protein sequence |
