Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60245.t1 | XP_003588697.1 | 98 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 8.70E-241 | 842.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60245.t1 | Q9LFM5 | 71.6 | 398 | 107 | 2 | 11 | 404 | 12 | 407 | 4.4e-169 | 595.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60245.t1 | G7I6C3 | 98.0 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 6.3e-241 | 842.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene60245 | 0.850995 | 1.18E-60 | -1.69E-46 |
| MS.gene050100 | MS.gene60245 | 0.810364 | 1.20E-50 | -1.69E-46 |
| MS.gene050298 | MS.gene60245 | 0.852318 | 4.99E-61 | -1.69E-46 |
| MS.gene050563 | MS.gene60245 | 0.899012 | 3.02E-77 | -1.69E-46 |
| MS.gene050584 | MS.gene60245 | 0.818702 | 1.71E-52 | -1.69E-46 |
| MS.gene050585 | MS.gene60245 | 0.814158 | 1.78E-51 | -1.69E-46 |
| MS.gene050587 | MS.gene60245 | 0.816491 | 5.38E-52 | -1.69E-46 |
| MS.gene051199 | MS.gene60245 | 0.816389 | 5.67E-52 | -1.69E-46 |
| MS.gene05143 | MS.gene60245 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene05157 | MS.gene60245 | 0.800044 | 1.73E-48 | -1.69E-46 |
| MS.gene052142 | MS.gene60245 | 0.851579 | 8.10E-61 | -1.69E-46 |
| MS.gene052187 | MS.gene60245 | 0.801405 | 9.15E-49 | -1.69E-46 |
| MS.gene052456 | MS.gene60245 | 0.833998 | 3.86E-56 | -1.69E-46 |
| MS.gene053074 | MS.gene60245 | 0.802114 | 6.54E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene60245 | 0.890938 | 6.26E-74 | -1.69E-46 |
| MS.gene05456 | MS.gene60245 | 0.879939 | 8.27E-70 | -1.69E-46 |
| MS.gene054791 | MS.gene60245 | 0.812862 | 3.42E-51 | -1.69E-46 |
| MS.gene055359 | MS.gene60245 | 0.874589 | 6.00E-68 | -1.69E-46 |
| MS.gene057022 | MS.gene60245 | 0.809684 | 1.68E-50 | -1.69E-46 |
| MS.gene057881 | MS.gene60245 | 0.801697 | 7.97E-49 | -1.69E-46 |
| MS.gene058918 | MS.gene60245 | 0.859326 | 4.47E-63 | -1.69E-46 |
| MS.gene059006 | MS.gene60245 | 0.845268 | 4.52E-59 | -1.69E-46 |
| MS.gene059632 | MS.gene60245 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene059768 | MS.gene60245 | 0.858302 | 9.05E-63 | -1.69E-46 |
| MS.gene060691 | MS.gene60245 | 0.862834 | 3.83E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019484 | MS.gene60245 | PPI |
| MS.gene60245 | MS.gene038029 | PPI |
| MS.gene40340 | MS.gene60245 | PPI |
| MS.gene027681 | MS.gene60245 | PPI |
| MS.gene24021 | MS.gene60245 | PPI |
| MS.gene013322 | MS.gene60245 | PPI |
| MS.gene014685 | MS.gene60245 | PPI |
| MS.gene018590 | MS.gene60245 | PPI |
| MS.gene29205 | MS.gene60245 | PPI |
| MS.gene23537 | MS.gene60245 | PPI |
| MS.gene31616 | MS.gene60245 | PPI |
| MS.gene60245 | MS.gene061851 | PPI |
| MS.gene94810 | MS.gene60245 | PPI |
| MS.gene60245 | MS.gene054944 | PPI |
| MS.gene86173 | MS.gene60245 | PPI |
| MS.gene031178 | MS.gene60245 | PPI |
| MS.gene32792 | MS.gene60245 | PPI |
| MS.gene64265 | MS.gene60245 | PPI |
| MS.gene36879 | MS.gene60245 | PPI |
| MS.gene56048 | MS.gene60245 | PPI |
| MS.gene60245 | MS.gene064951 | PPI |
| MS.gene09884 | MS.gene60245 | PPI |
| MS.gene60245 | MS.gene44331 | PPI |
| MS.gene021474 | MS.gene60245 | PPI |
| MS.gene059136 | MS.gene60245 | PPI |
| MS.gene059027 | MS.gene60245 | PPI |
| MS.gene44332 | MS.gene60245 | PPI |
| MS.gene60245 | MS.gene06418 | PPI |
| MS.gene049295 | MS.gene60245 | PPI |
| MS.gene57685 | MS.gene60245 | PPI |
| MS.gene60245 | MS.gene53594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60245.t1 | MTR_1g011630 | 98.030 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 0.0 | 835 |
| MS.gene60245.t1 | MTR_6g086870 | 60.668 | 389 | 145 | 2 | 13 | 393 | 17 | 405 | 0.0 | 514 |
| MS.gene60245.t1 | MTR_7g099330 | 58.005 | 381 | 157 | 2 | 9 | 388 | 17 | 395 | 1.74e-177 | 501 |
| MS.gene60245.t1 | MTR_1g008380 | 62.078 | 385 | 142 | 2 | 9 | 389 | 35 | 419 | 2.55e-177 | 501 |
| MS.gene60245.t1 | MTR_1g069275 | 57.360 | 394 | 164 | 3 | 9 | 398 | 18 | 411 | 2.96e-175 | 496 |
| MS.gene60245.t1 | MTR_1g046230 | 57.216 | 388 | 160 | 1 | 7 | 388 | 15 | 402 | 8.58e-175 | 494 |
| MS.gene60245.t1 | MTR_3g109520 | 59.788 | 378 | 147 | 3 | 11 | 383 | 34 | 411 | 6.52e-171 | 484 |
| MS.gene60245.t1 | MTR_7g099160 | 54.575 | 306 | 136 | 2 | 84 | 388 | 213 | 516 | 7.78e-125 | 371 |
| MS.gene60245.t1 | MTR_7g107710 | 44.652 | 374 | 196 | 5 | 17 | 384 | 7 | 375 | 1.13e-114 | 340 |
| MS.gene60245.t1 | MTR_8g432640 | 45.213 | 376 | 195 | 4 | 17 | 386 | 7 | 377 | 1.19e-114 | 340 |
| MS.gene60245.t1 | MTR_7g107690 | 42.632 | 380 | 207 | 4 | 17 | 390 | 9 | 383 | 6.72e-113 | 335 |
| MS.gene60245.t1 | MTR_5g033260 | 44.032 | 377 | 200 | 5 | 17 | 387 | 7 | 378 | 3.39e-112 | 334 |
| MS.gene60245.t1 | MTR_3g088925 | 42.278 | 395 | 216 | 5 | 17 | 404 | 8 | 397 | 5.74e-112 | 333 |
| MS.gene60245.t1 | MTR_3g088945 | 42.932 | 382 | 207 | 4 | 17 | 392 | 8 | 384 | 1.53e-111 | 332 |
| MS.gene60245.t1 | MTR_3g088955 | 41.519 | 395 | 219 | 5 | 17 | 404 | 8 | 397 | 3.50e-109 | 327 |
| MS.gene60245.t1 | MTR_4g051642 | 41.711 | 374 | 206 | 5 | 17 | 384 | 8 | 375 | 3.27e-105 | 317 |
| MS.gene60245.t1 | MTR_3g096030 | 35.795 | 176 | 85 | 3 | 17 | 188 | 7 | 158 | 2.85e-36 | 130 |
| MS.gene60245.t1 | MTR_8g037880 | 24.545 | 220 | 135 | 7 | 18 | 208 | 6 | 223 | 6.59e-17 | 82.4 |
| MS.gene60245.t1 | MTR_8g037910 | 23.558 | 208 | 129 | 6 | 18 | 197 | 6 | 211 | 2.35e-14 | 73.2 |
| MS.gene60245.t1 | MTR_2g450510 | 25.098 | 255 | 142 | 12 | 18 | 230 | 7 | 254 | 2.53e-14 | 75.1 |
| MS.gene60245.t1 | MTR_8g037910 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 3.81e-14 | 73.2 |
| MS.gene60245.t1 | MTR_8g037910 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 8.08e-14 | 73.2 |
| MS.gene60245.t1 | MTR_2g450310 | 26.772 | 254 | 137 | 11 | 18 | 229 | 7 | 253 | 9.26e-14 | 73.2 |
| MS.gene60245.t1 | MTR_4g124800 | 25.000 | 356 | 188 | 18 | 40 | 325 | 38 | 384 | 3.29e-12 | 68.6 |
| MS.gene60245.t1 | MTR_2g020630 | 25.726 | 241 | 132 | 10 | 18 | 215 | 16 | 252 | 1.82e-11 | 66.2 |
| MS.gene60245.t1 | MTR_3g437580 | 20.961 | 229 | 144 | 6 | 18 | 209 | 15 | 243 | 7.51e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60245.t1 | AT5G11320 | 71.788 | 397 | 106 | 2 | 11 | 403 | 12 | 406 | 0.0 | 599 |
| MS.gene60245.t1 | AT4G32540 | 63.000 | 400 | 143 | 3 | 11 | 406 | 16 | 414 | 0.0 | 551 |
| MS.gene60245.t1 | AT4G32540 | 62.935 | 402 | 142 | 4 | 11 | 406 | 16 | 416 | 0.0 | 546 |
| MS.gene60245.t1 | AT5G11320 | 72.531 | 324 | 87 | 1 | 11 | 334 | 12 | 333 | 7.27e-178 | 499 |
| MS.gene60245.t1 | AT4G13260 | 60.256 | 390 | 150 | 2 | 2 | 386 | 14 | 403 | 4.17e-177 | 500 |
| MS.gene60245.t1 | AT1G04610 | 57.364 | 387 | 158 | 1 | 9 | 388 | 30 | 416 | 1.37e-174 | 494 |
| MS.gene60245.t1 | AT1G04180 | 57.990 | 388 | 159 | 3 | 4 | 388 | 14 | 400 | 2.27e-173 | 491 |
| MS.gene60245.t1 | AT5G43890 | 55.527 | 389 | 167 | 2 | 6 | 388 | 15 | 403 | 8.07e-171 | 484 |
| MS.gene60245.t1 | AT4G28720 | 56.072 | 387 | 163 | 2 | 9 | 388 | 18 | 404 | 1.42e-169 | 481 |
| MS.gene60245.t1 | AT5G25620 | 58.312 | 391 | 157 | 4 | 10 | 395 | 27 | 416 | 8.00e-169 | 480 |
| MS.gene60245.t1 | AT5G25620 | 59.115 | 384 | 151 | 4 | 10 | 388 | 27 | 409 | 2.04e-168 | 478 |
| MS.gene60245.t1 | AT2G33230 | 57.106 | 387 | 158 | 2 | 9 | 388 | 25 | 410 | 5.56e-167 | 475 |
| MS.gene60245.t1 | AT4G13260 | 60.269 | 297 | 114 | 1 | 2 | 294 | 14 | 310 | 1.21e-136 | 393 |
| MS.gene60245.t1 | AT4G13260 | 57.931 | 290 | 117 | 2 | 102 | 386 | 11 | 300 | 7.18e-117 | 343 |
| MS.gene60245.t1 | AT1G21430 | 44.892 | 372 | 195 | 4 | 17 | 383 | 10 | 376 | 3.35e-116 | 344 |
| MS.gene60245.t1 | AT1G48910 | 42.820 | 383 | 206 | 5 | 17 | 392 | 6 | 382 | 8.00e-115 | 340 |
| MS.gene60245.t1 | AT1G19250 | 24.181 | 397 | 209 | 16 | 18 | 334 | 15 | 399 | 1.03e-15 | 79.3 |
| MS.gene60245.t1 | AT1G65860 | 24.336 | 226 | 135 | 8 | 18 | 210 | 15 | 237 | 1.51e-12 | 69.3 |
| MS.gene60245.t1 | AT5G07800 | 21.739 | 230 | 142 | 6 | 18 | 209 | 18 | 247 | 2.43e-12 | 68.6 |
| MS.gene60245.t1 | AT1G62560 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 8.24e-12 | 67.0 |
| MS.gene60245.t1 | AT1G62560 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 1.09e-11 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAAATT+TGG | 0.134264 | 1.1:+9038131 | MS.gene60245:CDS |
| GTCATTGGTTGTGGGAATTC+TGG | 0.224967 | 1.1:+9038331 | MS.gene60245:CDS |
| TTCTGGAATGGAAGTTAGTT+TGG | 0.279463 | 1.1:+9038348 | MS.gene60245:CDS |
| GTTAGTTTCAAGCTTCTTCT+TGG | 0.280395 | 1.1:+9039314 | MS.gene60245:CDS |
| TAGCTATGGGATTATATAAA+TGG | 0.285172 | 1.1:+9039259 | MS.gene60245:CDS |
| AATTAAATCCGGTAACATTA+AGG | 0.303146 | 1.1:+9039440 | MS.gene60245:CDS |
| GTTGCAAGTTTGAGTTCTAT+TGG | 0.313027 | 1.1:-9039378 | None:intergenic |
| ATGTTTGGTTTCTCAACATA+TGG | 0.323559 | 1.1:+9039234 | MS.gene60245:CDS |
| CATACAAGTGATTATAAATC+TGG | 0.355020 | 1.1:+9038280 | MS.gene60245:CDS |
| GATGCAATAATCTTAGCAAC+AGG | 0.380414 | 1.1:+9039635 | MS.gene60245:CDS |
| TAATCACTTGTATGAGCAAC+AGG | 0.388008 | 1.1:-9038271 | None:intergenic |
| GCAAAGTGTGTATGGATTCA+TGG | 0.396734 | 1.1:+9037809 | MS.gene60245:CDS |
| GTAACATACCTTAATGTTAC+CGG | 0.400738 | 1.1:-9039448 | None:intergenic |
| ATAGTAGGTGCTGGTCCTTC+AGG | 0.401110 | 1.1:+9037839 | MS.gene60245:CDS |
| ACACAATGCTATGCCTCATT+TGG | 0.405714 | 1.1:+9038381 | MS.gene60245:CDS |
| CCTTGGCTTATTGTTGCTAC+TGG | 0.412409 | 1.1:+9038193 | MS.gene60245:CDS |
| TTAGTTTCAAGCTTCTTCTT+GGG | 0.427173 | 1.1:+9039315 | MS.gene60245:CDS |
| TGTTCCATACCATGAATTGT+TGG | 0.436540 | 1.1:-9038238 | None:intergenic |
| ATTCTTCCAAGAGATATGTT+TGG | 0.437726 | 1.1:+9039219 | MS.gene60245:CDS |
| GGTATCAAGAGGCCTAAAAC+TGG | 0.451158 | 1.1:+9039354 | MS.gene60245:CDS |
| ACAAGAGCAATGTGCCTACT+TGG | 0.453063 | 1.1:+9039660 | MS.gene60245:CDS |
| GGACCAGCACCTACTATGAT+AGG | 0.457137 | 1.1:-9037833 | None:intergenic |
| GTTTGAGGAAAACTCATCAT+AGG | 0.461046 | 1.1:-9038001 | None:intergenic |
| GAGAAACCAAACATATCTCT+TGG | 0.462714 | 1.1:-9039225 | None:intergenic |
| TTGGGAAACACCAATCACTA+TGG | 0.465852 | 1.1:+9039333 | MS.gene60245:CDS |
| ATAGAACTCAAACTTGCAAC+AGG | 0.466421 | 1.1:+9039381 | MS.gene60245:CDS |
| CAAATAGCACAAATTAAATC+CGG | 0.476052 | 1.1:+9039429 | MS.gene60245:CDS |
| CTGAAGATATTACTAATCAA+TGG | 0.476187 | 1.1:+9040336 | MS.gene60245:CDS |
| GTGAAAGAGATAACAAGAAA+TGG | 0.481980 | 1.1:+9039578 | MS.gene60245:CDS |
| GTGATTGCATAGCTTCACTA+TGG | 0.487978 | 1.1:+9037921 | MS.gene60245:CDS |
| ATCACTTTGATATTCATCCT+AGG | 0.490915 | 1.1:+9038080 | MS.gene60245:CDS |
| CCTCTTGATACCATAGTGAT+TGG | 0.496998 | 1.1:-9039343 | None:intergenic |
| CCCTTTCCTCATGGTTGGAA+AGG | 0.498580 | 1.1:+9040239 | MS.gene60245:CDS |
| CTCAACATATGGAATAGCTA+TGG | 0.500774 | 1.1:+9039245 | MS.gene60245:CDS |
| AAACACCCTTTCCTCATGGT+TGG | 0.503476 | 1.1:+9040234 | MS.gene60245:CDS |
| CCTTTCCAACCATGAGGAAA+GGG | 0.506085 | 1.1:-9040239 | None:intergenic |
| ACATCAGTTCATTTCCTACA+TGG | 0.512049 | 1.1:+9038045 | MS.gene60245:CDS |
| ATTCATGGACCTATCATAGT+AGG | 0.515217 | 1.1:+9037824 | MS.gene60245:CDS |
| TCAACATATGGAATAGCTAT+GGG | 0.521973 | 1.1:+9039246 | MS.gene60245:CDS |
| GAGTTTCGTGCAACCAAATG+AGG | 0.533241 | 1.1:-9038394 | None:intergenic |
| TTCAAGTTCTCAAATTTGGA+TGG | 0.536810 | 1.1:+9038135 | MS.gene60245:CDS |
| GGACCTATCATAGTAGGTGC+TGG | 0.547397 | 1.1:+9037830 | MS.gene60245:CDS |
| AAAACTCCTGTACTTGATGT+TGG | 0.551364 | 1.1:+9039405 | MS.gene60245:CDS |
| GGATACTTAGGAAATGTTTG+AGG | 0.552505 | 1.1:-9038016 | None:intergenic |
| ACCTTTCCAACCATGAGGAA+AGG | 0.554382 | 1.1:-9040240 | None:intergenic |
| GAGCAAGGATTGTATACAGT+GGG | 0.564264 | 1.1:+9040263 | MS.gene60245:CDS |
| CTTCTCTCAAGAATGAGACT+TGG | 0.577619 | 1.1:-9037899 | None:intergenic |
| TTCACAAGAAGAGGTCTACA+TGG | 0.580526 | 1.1:+9040287 | MS.gene60245:CDS |
| AATATCAAAGTGATCAGCAT+AGG | 0.584130 | 1.1:-9038071 | None:intergenic |
| ATTTGACCAACATCAAGTAC+AGG | 0.585749 | 1.1:-9039411 | None:intergenic |
| CAATGTGCCTACTTGGCTCA+AGG | 0.592907 | 1.1:+9039667 | MS.gene60245:CDS |
| AGAACAGTTTGATTAAACCT+AGG | 0.595686 | 1.1:-9038097 | None:intergenic |
| ACAGTGGGTTTCACAAGAAG+AGG | 0.597945 | 1.1:+9040278 | MS.gene60245:CDS |
| CATGGTTGGAAAGGTGAGCA+AGG | 0.614511 | 1.1:+9040248 | MS.gene60245:CDS |
| TGGTTGTGGGAATTCTGGAA+TGG | 0.619937 | 1.1:+9038336 | MS.gene60245:CDS |
| GCTGCTTGTTTATCAGAACA+AGG | 0.634289 | 1.1:+9037872 | MS.gene60245:CDS |
| TGCTCACCTTTCCAACCATG+AGG | 0.637968 | 1.1:-9040245 | None:intergenic |
| TTAATATTGTAGGTGATGGA+AGG | 0.640132 | 1.1:+9039554 | MS.gene60245:intron |
| CCAATCACTATGGTATCAAG+AGG | 0.641108 | 1.1:+9039343 | MS.gene60245:CDS |
| CCAGTAGCAACAATAAGCCA+AGG | 0.647996 | 1.1:-9038193 | None:intergenic |
| GCAGCTACTGCTATACCTGA+AGG | 0.661207 | 1.1:-9037854 | None:intergenic |
| ATGCAATAATCTTAGCAACA+GGG | 0.685349 | 1.1:+9039636 | MS.gene60245:CDS |
| ATCAGCATAGGATTCCATGT+AGG | 0.688016 | 1.1:-9038059 | None:intergenic |
| TGAGCAAGGATTGTATACAG+TGG | 0.697920 | 1.1:+9040262 | MS.gene60245:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAATAAATTTATT+AGG | + | chr1.1:9039476-9039495 | MS.gene60245:intron | 0.0% |
| !! | GATATTATAAAAAAAAAATG+CGG | + | chr1.1:9038464-9038483 | MS.gene60245:intron | 10.0% |
| !!! | TTTGATATGTATATTTTTTT+AGG | + | chr1.1:9039511-9039530 | MS.gene60245:intron | 10.0% |
| !!! | TTTTTTTTTTTATTGATTCA+GGG | + | chr1.1:9040179-9040198 | MS.gene60245:intron | 10.0% |
| !!! | TTTTTTTTTTTTATTGATTC+AGG | + | chr1.1:9040178-9040197 | MS.gene60245:intron | 10.0% |
| !! | AAAGAAATATTAAATGATGA+AGG | - | chr1.1:9038817-9038836 | None:intergenic | 15.0% |
| !! | ATTATTAAAATTACCCAAAT+GGG | - | chr1.1:9039134-9039153 | None:intergenic | 15.0% |
| !!! | AAAGAATAGTACTTTTTAAA+AGG | - | chr1.1:9040053-9040072 | None:intergenic | 15.0% |
| !!! | AAGAATAGTACTTTTTAAAA+GGG | - | chr1.1:9040052-9040071 | None:intergenic | 15.0% |
| !!! | GCAATATTTTATATGATTTA+AGG | + | chr1.1:9039191-9039210 | MS.gene60245:intron | 15.0% |
| !! | AAAGAATAAAATCAGTTTCT+TGG | + | chr1.1:9039828-9039847 | MS.gene60245:intron | 20.0% |
| !! | AAATGACAATTAAAAAGGAA+CGG | + | chr1.1:9038948-9038967 | MS.gene60245:intron | 20.0% |
| !! | ATTGAAATTCGAAAGAAAAA+AGG | - | chr1.1:9038429-9038448 | None:intergenic | 20.0% |
| !! | ATTGTTTAGTACTTAAAATG+AGG | + | chr1.1:9039088-9039107 | MS.gene60245:intron | 20.0% |
| !! | GATTATTAAAATTACCCAAA+TGG | - | chr1.1:9039135-9039154 | None:intergenic | 20.0% |
| !! | TAAATAATCAAGGGTAATAA+AGG | + | chr1.1:9038857-9038876 | MS.gene60245:intron | 20.0% |
| !! | TTAAAAAGGAACGATTAAAA+AGG | - | chr1.1:9038705-9038724 | None:intergenic | 20.0% |
| !! | TTCTGAGTACAAAAATAAAA+AGG | + | chr1.1:9038303-9038322 | MS.gene60245:CDS | 20.0% |
| !! | TTGAAATTCGAAAGAAAAAA+GGG | - | chr1.1:9038428-9038447 | None:intergenic | 20.0% |
| !!! | AACTTGTCTACTAATTTTAA+TGG | - | chr1.1:9039288-9039307 | None:intergenic | 20.0% |
| !!! | AATGATTTTTTCACTAAAGA+TGG | + | chr1.1:9040203-9040222 | MS.gene60245:CDS | 20.0% |
| !!! | ATAAAACAGTACTAAACTTT+TGG | + | chr1.1:9040078-9040097 | MS.gene60245:intron | 20.0% |
| !!! | ATATGTTATTTTTTCCCATT+TGG | + | chr1.1:9039117-9039136 | MS.gene60245:intron | 20.0% |
| !!! | GTACAAAAATAAAAAGGTTT+TGG | + | chr1.1:9038309-9038328 | MS.gene60245:CDS | 20.0% |
| !!! | TAGGTAAATGAAGTTTTAAA+CGG | - | chr1.1:9037964-9037983 | None:intergenic | 20.0% |
| !!! | TATGTATATTTTTTTAGGCT+AGG | + | chr1.1:9039516-9039535 | MS.gene60245:intron | 20.0% |
| !!! | TATGTTATTTTTTCCCATTT+GGG | + | chr1.1:9039118-9039137 | MS.gene60245:intron | 20.0% |
| !!! | TTTTAATCGTTCCTTTTTAA+TGG | + | chr1.1:9038705-9038724 | MS.gene60245:intron | 20.0% |
| ! | AAAAAAAATGCGGTTTAATG+TGG | + | chr1.1:9038474-9038493 | MS.gene60245:intron | 25.0% |
| ! | AAATCACGACAAAAAAATGA+TGG | - | chr1.1:9038629-9038648 | None:intergenic | 25.0% |
| ! | AATTAAATCCGGTAACATTA+AGG | + | chr1.1:9039440-9039459 | MS.gene60245:CDS | 25.0% |
| ! | CAAATAGCACAAATTAAATC+CGG | + | chr1.1:9039429-9039448 | MS.gene60245:CDS | 25.0% |
| ! | CATACAAGTGATTATAAATC+TGG | + | chr1.1:9038280-9038299 | MS.gene60245:CDS | 25.0% |
| ! | CTGAAGATATTACTAATCAA+TGG | + | chr1.1:9040336-9040355 | MS.gene60245:CDS | 25.0% |
| ! | CTGCAAAATGACAATTAAAA+AGG | + | chr1.1:9038943-9038962 | MS.gene60245:intron | 25.0% |
| ! | TAGCTATGGGATTATATAAA+TGG | + | chr1.1:9039259-9039278 | MS.gene60245:CDS | 25.0% |
| ! | TCTCTGCAATAAATAATCAA+GGG | + | chr1.1:9038848-9038867 | MS.gene60245:intron | 25.0% |
| ! | TTAATACATGTTTCGATTCA+TGG | + | chr1.1:9038559-9038578 | MS.gene60245:intron | 25.0% |
| ! | TTGATTAATATTGTAGGTGA+TGG | + | chr1.1:9039550-9039569 | MS.gene60245:intron | 25.0% |
| ! | TTGGGATTGATTAATATTGT+AGG | + | chr1.1:9039544-9039563 | MS.gene60245:intron | 25.0% |
| ! | TTTAATAAGGTCACTCATAA+AGG | + | chr1.1:9039024-9039043 | MS.gene60245:intron | 25.0% |
| !! | AAGAAATGGTGCAAAATTTT+TGG | + | chr1.1:9039592-9039611 | MS.gene60245:CDS | 25.0% |
| !! | ATTTTCAGTATTTTTCACCT+TGG | + | chr1.1:9038176-9038195 | MS.gene60245:CDS | 25.0% |
| !! | TGTTTTTCTCTTCTTTTACA+TGG | + | chr1.1:9040142-9040161 | MS.gene60245:intron | 25.0% |
| !! | TTGATTCAAGTTCTCAAATT+TGG | + | chr1.1:9038131-9038150 | MS.gene60245:CDS | 25.0% |
| !!! | AATAAAAAGGTTTTGGTCAT+TGG | + | chr1.1:9038316-9038335 | MS.gene60245:CDS | 25.0% |
| !!! | AATATCTTCAGCTATTTTGA+TGG | - | chr1.1:9040327-9040346 | None:intergenic | 25.0% |
| !!! | TTTTTAGGCTAGGATTAATT+GGG | + | chr1.1:9039526-9039545 | MS.gene60245:intron | 25.0% |
| !!! | TTTTTTAGGCTAGGATTAAT+TGG | + | chr1.1:9039525-9039544 | MS.gene60245:intron | 25.0% |
| AAGAAAAAGCAAAGTGTGTA+TGG | + | chr1.1:9037801-9037820 | MS.gene60245:CDS | 30.0% | |
| AAGGAACGATTAAAAAGGAA+CGG | - | chr1.1:9038700-9038719 | None:intergenic | 30.0% | |
| AATATCAAAGTGATCAGCAT+AGG | - | chr1.1:9038074-9038093 | None:intergenic | 30.0% | |
| AGAACAGTTTGATTAAACCT+AGG | - | chr1.1:9038100-9038119 | None:intergenic | 30.0% | |
| ATCACTTTGATATTCATCCT+AGG | + | chr1.1:9038080-9038099 | MS.gene60245:CDS | 30.0% | |
| ATGCAATAATCTTAGCAACA+GGG | + | chr1.1:9039636-9039655 | MS.gene60245:CDS | 30.0% | |
| ATTCTTCCAAGAGATATGTT+TGG | + | chr1.1:9039219-9039238 | MS.gene60245:CDS | 30.0% | |
| CTCTCTGCAATAAATAATCA+AGG | + | chr1.1:9038847-9038866 | MS.gene60245:intron | 30.0% | |
| GGTAGTTCACAAAAATGTTT+AGG | - | chr1.1:9037983-9038002 | None:intergenic | 30.0% | |
| GTAACATACCTTAATGTTAC+CGG | - | chr1.1:9039451-9039470 | None:intergenic | 30.0% | |
| GTGAAAGAGATAACAAGAAA+TGG | + | chr1.1:9039578-9039597 | MS.gene60245:CDS | 30.0% | |
| TCAACATATGGAATAGCTAT+GGG | + | chr1.1:9039246-9039265 | MS.gene60245:CDS | 30.0% | |
| TTAGTTTCAAGCTTCTTCTT+GGG | + | chr1.1:9039315-9039334 | MS.gene60245:CDS | 30.0% | |
| ! | ATGTTTGGTTTCTCAACATA+TGG | + | chr1.1:9039234-9039253 | MS.gene60245:CDS | 30.0% |
| ! | GAAATGAACTGATGTTTTGT+AGG | - | chr1.1:9038040-9038059 | None:intergenic | 30.0% |
| ! | GATGGTTTTTGACAAAATTG+CGG | - | chr1.1:9038611-9038630 | None:intergenic | 30.0% |
| ! | TGATGTTTTGTAGGATACTT+AGG | - | chr1.1:9038031-9038050 | None:intergenic | 30.0% |
| ! | TTCAAGTTCTCAAATTTGGA+TGG | + | chr1.1:9038135-9038154 | MS.gene60245:CDS | 30.0% |
| ! | TTTTCCAACAATTCATGGTA+TGG | + | chr1.1:9038234-9038253 | MS.gene60245:CDS | 30.0% |
| !! | AATGGTGCAAAATTTTTGGA+TGG | + | chr1.1:9039596-9039615 | MS.gene60245:CDS | 30.0% |
| !! | ACTTGTGAGTTTGTTCTTTT+TGG | + | chr1.1:9039157-9039176 | MS.gene60245:intron | 30.0% |
| !! | ATTTTTGGATGGACAAGAAA+AGG | + | chr1.1:9039607-9039626 | MS.gene60245:CDS | 30.0% |
| !! | TAGCTAGAACTTTGAAATGA+CGG | - | chr1.1:9038663-9038682 | None:intergenic | 30.0% |
| !! | TCCTTTTTAATGGTCACTTT+TGG | + | chr1.1:9038715-9038734 | MS.gene60245:intron | 30.0% |
| !! | TTAATATTGTAGGTGATGGA+AGG | + | chr1.1:9039554-9039573 | MS.gene60245:intron | 30.0% |
| !!! | ATGAAGTTTTAAACGGTCAT+AGG | - | chr1.1:9037957-9037976 | None:intergenic | 30.0% |
| !!! | CACTTTGCTTTTTCTTTGAA+AGG | - | chr1.1:9037797-9037816 | None:intergenic | 30.0% |
| !!! | CCTTTTTAATGGTCACTTTT+GGG | + | chr1.1:9038716-9038735 | MS.gene60245:intron | 30.0% |
| !!! | TTGTTCTTTTTGGCTAACTT+TGG | + | chr1.1:9039167-9039186 | MS.gene60245:intron | 30.0% |
| AAAACTCCTGTACTTGATGT+TGG | + | chr1.1:9039405-9039424 | MS.gene60245:CDS | 35.0% | |
| ACATCAGTTCATTTCCTACA+TGG | + | chr1.1:9038045-9038064 | MS.gene60245:CDS | 35.0% | |
| ATAGAACTCAAACTTGCAAC+AGG | + | chr1.1:9039381-9039400 | MS.gene60245:CDS | 35.0% | |
| ATTCATGGACCTATCATAGT+AGG | + | chr1.1:9037824-9037843 | MS.gene60245:CDS | 35.0% | |
| ATTTGACCAACATCAAGTAC+AGG | - | chr1.1:9039414-9039433 | None:intergenic | 35.0% | |
| CCATGAATTGTTGGAAAAAC+AGG | - | chr1.1:9038232-9038251 | None:intergenic | 35.0% | |
| CCCAAAAGTGACCATTAAAA+AGG | - | chr1.1:9038719-9038738 | None:intergenic | 35.0% | |
| CTCAACATATGGAATAGCTA+TGG | + | chr1.1:9039245-9039264 | MS.gene60245:CDS | 35.0% | |
| CTTATGACCTATCACTATCT+AGG | + | chr1.1:9039743-9039762 | MS.gene60245:intron | 35.0% | |
| GACAATTAAAAAGGAACGGA+GGG | + | chr1.1:9038952-9038971 | MS.gene60245:intron | 35.0% | |
| GAGAAACCAAACATATCTCT+TGG | - | chr1.1:9039228-9039247 | None:intergenic | 35.0% | |
| GATGCAATAATCTTAGCAAC+AGG | + | chr1.1:9039635-9039654 | MS.gene60245:CDS | 35.0% | |
| GGATACTTAGGAAATGTTTG+AGG | - | chr1.1:9038019-9038038 | None:intergenic | 35.0% | |
| GTTTGAGGAAAACTCATCAT+AGG | - | chr1.1:9038004-9038023 | None:intergenic | 35.0% | |
| TAATCACTTGTATGAGCAAC+AGG | - | chr1.1:9038274-9038293 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | + | chr1.1:9038951-9038970 | MS.gene60245:intron | 35.0% | |
| TGTTCCATACCATGAATTGT+TGG | - | chr1.1:9038241-9038260 | None:intergenic | 35.0% | |
| TTTGACAAAATTGCGGTCAT+AGG | - | chr1.1:9038604-9038623 | None:intergenic | 35.0% | |
| ! | AGTTCTATTGGACCAGTTTT+AGG | - | chr1.1:9039369-9039388 | None:intergenic | 35.0% |
| ! | CATCGATTAAAGATGCATCT+CGG | - | chr1.1:9038500-9038519 | None:intergenic | 35.0% |
| ! | CATGGTATGGAACATTTTCA+TGG | + | chr1.1:9038247-9038266 | MS.gene60245:CDS | 35.0% |
| ! | GTTAGTTTCAAGCTTCTTCT+TGG | + | chr1.1:9039314-9039333 | MS.gene60245:CDS | 35.0% |
| ! | GTTGCAAGTTTGAGTTCTAT+TGG | - | chr1.1:9039381-9039400 | None:intergenic | 35.0% |
| ! | TTTTTAACCTTGAGCCAAGT+AGG | - | chr1.1:9039677-9039696 | None:intergenic | 35.0% |
| !! | CCTGTTTTTCCAACAATTCA+TGG | + | chr1.1:9038229-9038248 | MS.gene60245:CDS | 35.0% |
| !! | TTCTGGAATGGAAGTTAGTT+TGG | + | chr1.1:9038348-9038367 | MS.gene60245:CDS | 35.0% |
| ACACAATGCTATGCCTCATT+TGG | + | chr1.1:9038381-9038400 | MS.gene60245:CDS | 40.0% | |
| ACCTATCACTATCTAGGCTT+GGG | + | chr1.1:9039749-9039768 | MS.gene60245:intron | 40.0% | |
| ATCAGCATAGGATTCCATGT+AGG | - | chr1.1:9038062-9038081 | None:intergenic | 40.0% | |
| CCAATCACTATGGTATCAAG+AGG | + | chr1.1:9039343-9039362 | MS.gene60245:CDS | 40.0% | |
| CCTCTTGATACCATAGTGAT+TGG | - | chr1.1:9039346-9039365 | None:intergenic | 40.0% | |
| CTTCTCTCAAGAATGAGACT+TGG | - | chr1.1:9037902-9037921 | None:intergenic | 40.0% | |
| GAACGATTAAAAAGGAACGG+AGG | - | chr1.1:9038697-9038716 | None:intergenic | 40.0% | |
| GAGCAAGGATTGTATACAGT+GGG | + | chr1.1:9040263-9040282 | MS.gene60245:CDS | 40.0% | |
| GCAAAGTGTGTATGGATTCA+TGG | + | chr1.1:9037809-9037828 | MS.gene60245:CDS | 40.0% | |
| GCTGCTTGTTTATCAGAACA+AGG | + | chr1.1:9037872-9037891 | MS.gene60245:CDS | 40.0% | |
| GTGATTGCATAGCTTCACTA+TGG | + | chr1.1:9037921-9037940 | MS.gene60245:CDS | 40.0% | |
| TGAGCAAGGATTGTATACAG+TGG | + | chr1.1:9040262-9040281 | MS.gene60245:CDS | 40.0% | |
| TTCACAAGAAGAGGTCTACA+TGG | + | chr1.1:9040287-9040306 | MS.gene60245:CDS | 40.0% | |
| TTGGGAAACACCAATCACTA+TGG | + | chr1.1:9039333-9039352 | MS.gene60245:CDS | 40.0% | |
| !! | AAGGTTTTGGTCATTGGTTG+TGG | + | chr1.1:9038322-9038341 | MS.gene60245:CDS | 40.0% |
| !! | AGGTTTTGGTCATTGGTTGT+GGG | + | chr1.1:9038323-9038342 | MS.gene60245:CDS | 40.0% |
| AAACACCCTTTCCTCATGGT+TGG | + | chr1.1:9040234-9040253 | MS.gene60245:CDS | 45.0% | |
| ACAAGAGCAATGTGCCTACT+TGG | + | chr1.1:9039660-9039679 | MS.gene60245:CDS | 45.0% | |
| ACCTTTCCAACCATGAGGAA+AGG | - | chr1.1:9040243-9040262 | None:intergenic | 45.0% | |
| CCAAAAACACCCTTTCCTCA+TGG | + | chr1.1:9040230-9040249 | MS.gene60245:CDS | 45.0% | |
| CCAGTAGCAACAATAAGCCA+AGG | - | chr1.1:9038196-9038215 | None:intergenic | 45.0% | |
| CCTTGGCTTATTGTTGCTAC+TGG | + | chr1.1:9038193-9038212 | MS.gene60245:CDS | 45.0% | |
| CCTTTCCAACCATGAGGAAA+GGG | - | chr1.1:9040242-9040261 | None:intergenic | 45.0% | |
| GACCTATCACTATCTAGGCT+TGG | + | chr1.1:9039748-9039767 | MS.gene60245:intron | 45.0% | |
| GAGTTTCGTGCAACCAAATG+AGG | - | chr1.1:9038397-9038416 | None:intergenic | 45.0% | |
| GGTATCAAGAGGCCTAAAAC+TGG | + | chr1.1:9039354-9039373 | MS.gene60245:CDS | 45.0% | |
| TCCCAAGCCTAGATAGTGAT+AGG | - | chr1.1:9039753-9039772 | None:intergenic | 45.0% | |
| ! | ACAGTGGGTTTCACAAGAAG+AGG | + | chr1.1:9040278-9040297 | MS.gene60245:CDS | 45.0% |
| ! | GTCATTGGTTGTGGGAATTC+TGG | + | chr1.1:9038331-9038350 | MS.gene60245:CDS | 45.0% |
| ! | TGGTTGTGGGAATTCTGGAA+TGG | + | chr1.1:9038336-9038355 | MS.gene60245:CDS | 45.0% |
| !!! | CCATGAGGAAAGGGTGTTTT+TGG | - | chr1.1:9040233-9040252 | None:intergenic | 45.0% |
| !! | TATTTAAATATTAAAAAAAG+TGG | - | chr1.1:9039861-9039880 | None:intergenic | 5.0% |
| !!! | TTATATTAATACTTTTAATA+AGG | + | chr1.1:9039011-9039030 | MS.gene60245:intron | 5.0% |
| CAATGTGCCTACTTGGCTCA+AGG | + | chr1.1:9039667-9039686 | MS.gene60245:CDS | 50.0% | |
| CATGGTTGGAAAGGTGAGCA+AGG | + | chr1.1:9040248-9040267 | MS.gene60245:CDS | 50.0% | |
| CCCTTTCCTCATGGTTGGAA+AGG | + | chr1.1:9040239-9040258 | MS.gene60245:CDS | 50.0% | |
| GCAGCTACTGCTATACCTGA+AGG | - | chr1.1:9037857-9037876 | None:intergenic | 50.0% | |
| GGACCAGCACCTACTATGAT+AGG | - | chr1.1:9037836-9037855 | None:intergenic | 50.0% | |
| GGACCTATCATAGTAGGTGC+TGG | + | chr1.1:9037830-9037849 | MS.gene60245:CDS | 50.0% | |
| TGCTCACCTTTCCAACCATG+AGG | - | chr1.1:9040248-9040267 | None:intergenic | 50.0% | |
| !! | ATAGTAGGTGCTGGTCCTTC+AGG | + | chr1.1:9037839-9037858 | MS.gene60245:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 9037788 | 9040418 | 9037788 | ID=MS.gene60245 |
| chr1.1 | mRNA | 9037788 | 9040418 | 9037788 | ID=MS.gene60245.t1;Parent=MS.gene60245 |
| chr1.1 | exon | 9037788 | 9038417 | 9037788 | ID=MS.gene60245.t1.exon1;Parent=MS.gene60245.t1 |
| chr1.1 | CDS | 9037788 | 9038417 | 9037788 | ID=cds.MS.gene60245.t1;Parent=MS.gene60245.t1 |
| chr1.1 | exon | 9039213 | 9039461 | 9039213 | ID=MS.gene60245.t1.exon2;Parent=MS.gene60245.t1 |
| chr1.1 | CDS | 9039213 | 9039461 | 9039213 | ID=cds.MS.gene60245.t1;Parent=MS.gene60245.t1 |
| chr1.1 | exon | 9039566 | 9039688 | 9039566 | ID=MS.gene60245.t1.exon3;Parent=MS.gene60245.t1 |
| chr1.1 | CDS | 9039566 | 9039688 | 9039566 | ID=cds.MS.gene60245.t1;Parent=MS.gene60245.t1 |
| chr1.1 | exon | 9040200 | 9040418 | 9040200 | ID=MS.gene60245.t1.exon4;Parent=MS.gene60245.t1 |
| chr1.1 | CDS | 9040200 | 9040418 | 9040200 | ID=cds.MS.gene60245.t1;Parent=MS.gene60245.t1 |
| Gene Sequence |
| Protein sequence |
