AlfalfaGEDB | MS.gene33651

M. sativa cultivar XinJiangDaYe / MS.gene33651

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33651.t1	GAU34592.1	94	50	3	0	1	50	1	50	4.60E-19	102.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33651.t1	A0A2Z6ND44	94.0	50	3	0	1	50	1	50	3.3e-19	102.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene33651	0.839344	1.68E-57	-1.69E-46
MS.gene04919	MS.gene33651	0.819281	1.26E-52	-1.69E-46
MS.gene04920	MS.gene33651	0.838074	3.57E-57	-1.69E-46
MS.gene049254	MS.gene33651	0.881187	2.96E-70	-1.69E-46
MS.gene049283	MS.gene33651	0.849942	2.34E-60	-1.69E-46
MS.gene049343	MS.gene33651	0.822801	1.95E-53	-1.69E-46
MS.gene049368	MS.gene33651	0.810926	9.04E-51	-1.69E-46
MS.gene049419	MS.gene33651	-0.851881	6.65E-61	-1.69E-46
MS.gene049452	MS.gene33651	0.838378	2.98E-57	-1.69E-46
MS.gene049499	MS.gene33651	0.851931	6.44E-61	-1.69E-46
MS.gene049567	MS.gene33651	0.818053	2.40E-52	-1.69E-46
MS.gene049652	MS.gene33651	0.805684	1.19E-49	-1.69E-46
MS.gene049669	MS.gene33651	0.823524	1.32E-53	-1.69E-46
MS.gene049873	MS.gene33651	0.805253	1.46E-49	-1.69E-46
MS.gene049983	MS.gene33651	0.854937	8.82E-62	-1.69E-46
MS.gene050026	MS.gene33651	0.817941	2.54E-52	-1.69E-46
MS.gene050105	MS.gene33651	0.840218	9.93E-58	-1.69E-46
MS.gene050312	MS.gene33651	0.814682	1.36E-51	-1.69E-46
MS.gene050355	MS.gene33651	0.801452	8.94E-49	-1.69E-46
MS.gene050559	MS.gene33651	0.845296	4.44E-59	-1.69E-46
MS.gene050561	MS.gene33651	0.836465	9.21E-57	-1.69E-46
MS.gene050562	MS.gene33651	0.831333	1.77E-55	-1.69E-46
MS.gene050654	MS.gene33651	0.803902	2.79E-49	-1.69E-46
MS.gene050750	MS.gene33651	0.809215	2.11E-50	-1.69E-46
MS.gene050953	MS.gene33651	0.815741	7.91E-52	-1.69E-46
MS.gene051122	MS.gene33651	0.815081	1.11E-51	-1.69E-46
MS.gene051181	MS.gene33651	0.809148	2.18E-50	-1.69E-46
MS.gene051332	MS.gene33651	0.825438	4.69E-54	-1.69E-46
MS.gene051368	MS.gene33651	0.817389	3.38E-52	-1.69E-46
MS.gene051490	MS.gene33651	0.817325	3.50E-52	-1.69E-46
MS.gene051492	MS.gene33651	0.817689	2.90E-52	-1.69E-46
MS.gene051574	MS.gene33651	0.805381	1.37E-49	-1.69E-46
MS.gene051597	MS.gene33651	0.816434	5.54E-52	-1.69E-46
MS.gene051676	MS.gene33651	0.80314	4.02E-49	-1.69E-46
MS.gene051699	MS.gene33651	0.822353	2.48E-53	-1.69E-46
MS.gene051744	MS.gene33651	0.821106	4.82E-53	-1.69E-46
MS.gene051832	MS.gene33651	0.822923	1.83E-53	-1.69E-46
MS.gene051848	MS.gene33651	-0.805724	1.16E-49	-1.69E-46
MS.gene051924	MS.gene33651	-0.805188	1.51E-49	-1.69E-46
MS.gene051926	MS.gene33651	-0.825764	3.92E-54	-1.69E-46
MS.gene051975	MS.gene33651	0.820081	8.28E-53	-1.69E-46
MS.gene052108	MS.gene33651	0.845674	3.51E-59	-1.69E-46
MS.gene052118	MS.gene33651	0.812605	3.90E-51	-1.69E-46
MS.gene052208	MS.gene33651	0.800128	1.67E-48	-1.69E-46
MS.gene052333	MS.gene33651	0.825291	5.08E-54	-1.69E-46
MS.gene052463	MS.gene33651	0.810672	1.03E-50	-1.69E-46
MS.gene052493	MS.gene33651	0.829966	3.83E-55	-1.69E-46
MS.gene052519	MS.gene33651	0.845401	4.16E-59	-1.69E-46
MS.gene052533	MS.gene33651	0.812048	5.16E-51	-1.69E-46
MS.gene052534	MS.gene33651	0.851198	1.04E-60	-1.69E-46
MS.gene052582	MS.gene33651	0.828426	9.05E-55	-1.69E-46
MS.gene052584	MS.gene33651	0.832299	1.02E-55	-1.69E-46
MS.gene052586	MS.gene33651	0.845145	4.87E-59	-1.69E-46
MS.gene052674	MS.gene33651	0.821584	3.74E-53	-1.69E-46
MS.gene052675	MS.gene33651	0.820294	7.40E-53	-1.69E-46
MS.gene052677	MS.gene33651	0.821726	3.46E-53	-1.69E-46
MS.gene052685	MS.gene33651	0.868568	5.93E-66	-1.69E-46
MS.gene052686	MS.gene33651	0.823643	1.24E-53	-1.69E-46
MS.gene052855	MS.gene33651	0.809539	1.80E-50	-1.69E-46
MS.gene052888	MS.gene33651	0.802123	6.51E-49	-1.69E-46
MS.gene052889	MS.gene33651	0.820099	8.20E-53	-1.69E-46
MS.gene052954	MS.gene33651	0.82592	3.60E-54	-1.69E-46
MS.gene052965	MS.gene33651	-0.815136	1.08E-51	-1.69E-46
MS.gene053006	MS.gene33651	0.839943	1.17E-57	-1.69E-46
MS.gene05308	MS.gene33651	0.814388	1.58E-51	-1.69E-46
MS.gene053094	MS.gene33651	0.827357	1.64E-54	-1.69E-46
MS.gene053166	MS.gene33651	0.80949	1.84E-50	-1.69E-46
MS.gene053226	MS.gene33651	0.815143	1.08E-51	-1.69E-46
MS.gene053272	MS.gene33651	-0.809432	1.90E-50	-1.69E-46
MS.gene053298	MS.gene33651	0.875731	2.44E-68	-1.69E-46
MS.gene053321	MS.gene33651	0.832702	8.13E-56	-1.69E-46
MS.gene053340	MS.gene33651	0.84002	1.12E-57	-1.69E-46
MS.gene05365	MS.gene33651	0.802337	5.89E-49	-1.69E-46
MS.gene053931	MS.gene33651	0.811881	5.61E-51	-1.69E-46
MS.gene053963	MS.gene33651	0.881748	1.85E-70	-1.69E-46
MS.gene053995	MS.gene33651	0.819872	9.25E-53	-1.69E-46
MS.gene05410	MS.gene33651	0.809533	1.81E-50	-1.69E-46
MS.gene05414	MS.gene33651	0.811459	6.93E-51	-1.69E-46
MS.gene05415	MS.gene33651	0.846102	2.68E-59	-1.69E-46
MS.gene054222	MS.gene33651	0.869124	3.92E-66	-1.69E-46
MS.gene054236	MS.gene33651	0.804834	1.79E-49	-1.69E-46
MS.gene05423	MS.gene33651	0.839419	1.60E-57	-1.69E-46
MS.gene054291	MS.gene33651	-0.822106	2.83E-53	-1.69E-46
MS.gene05439	MS.gene33651	0.833155	6.27E-56	-1.69E-46
MS.gene054405	MS.gene33651	0.80786	4.11E-50	-1.69E-46
MS.gene054479	MS.gene33651	0.856429	3.24E-62	-1.69E-46
MS.gene054576	MS.gene33651	0.83452	2.86E-56	-1.69E-46
MS.gene05458	MS.gene33651	0.808876	2.50E-50	-1.69E-46
MS.gene054651	MS.gene33651	0.842103	3.17E-58	-1.69E-46
MS.gene054657	MS.gene33651	0.809225	2.10E-50	-1.69E-46
MS.gene054684	MS.gene33651	0.804162	2.47E-49	-1.69E-46
MS.gene054892	MS.gene33651	0.852471	4.52E-61	-1.69E-46
MS.gene054893	MS.gene33651	0.852821	3.59E-61	-1.69E-46
MS.gene054957	MS.gene33651	0.813055	3.11E-51	-1.69E-46
MS.gene055166	MS.gene33651	0.824962	6.07E-54	-1.69E-46
MS.gene055222	MS.gene33651	0.817938	2.54E-52	-1.69E-46
MS.gene055225	MS.gene33651	0.807082	6.01E-50	-1.69E-46
MS.gene055226	MS.gene33651	0.818448	1.95E-52	-1.69E-46
MS.gene055228	MS.gene33651	0.816799	4.59E-52	-1.69E-46
MS.gene05548	MS.gene33651	0.810947	8.95E-51	-1.69E-46
MS.gene055586	MS.gene33651	0.832635	8.45E-56	-1.69E-46
MS.gene055589	MS.gene33651	0.801985	6.95E-49	-1.69E-46
MS.gene055701	MS.gene33651	0.814167	1.77E-51	-1.69E-46
MS.gene055724	MS.gene33651	0.839813	1.27E-57	-1.69E-46
MS.gene055818	MS.gene33651	0.814408	1.56E-51	-1.69E-46
MS.gene055841	MS.gene33651	0.836396	9.59E-57	-1.69E-46
MS.gene056050	MS.gene33651	0.806388	8.43E-50	-1.69E-46
MS.gene056068	MS.gene33651	0.831775	1.38E-55	-1.69E-46
MS.gene056162	MS.gene33651	0.813339	2.69E-51	-1.69E-46
MS.gene056174	MS.gene33651	0.815169	1.06E-51	-1.69E-46
MS.gene056272	MS.gene33651	0.82723	1.75E-54	-1.69E-46
MS.gene05636	MS.gene33651	0.803366	3.61E-49	-1.69E-46
MS.gene056403	MS.gene33651	0.802489	5.48E-49	-1.69E-46
MS.gene056506	MS.gene33651	0.81565	8.29E-52	-1.69E-46
MS.gene05659	MS.gene33651	0.822873	1.88E-53	-1.69E-46
MS.gene056699	MS.gene33651	0.824483	7.88E-54	-1.69E-46
MS.gene056776	MS.gene33651	0.853809	1.87E-61	-1.69E-46
MS.gene056779	MS.gene33651	0.866338	3.07E-65	-1.69E-46
MS.gene05686	MS.gene33651	0.83904	2.01E-57	-1.69E-46
MS.gene05690	MS.gene33651	0.819746	9.88E-53	-1.69E-46
MS.gene056973	MS.gene33651	0.814304	1.65E-51	-1.69E-46
MS.gene056986	MS.gene33651	0.822858	1.89E-53	-1.69E-46
MS.gene057026	MS.gene33651	0.821725	3.47E-53	-1.69E-46
MS.gene057071	MS.gene33651	0.819907	9.08E-53	-1.69E-46
MS.gene057102	MS.gene33651	0.838913	2.17E-57	-1.69E-46
MS.gene057155	MS.gene33651	0.85261	4.12E-61	-1.69E-46
MS.gene057208	MS.gene33651	0.875504	2.93E-68	-1.69E-46
MS.gene057611	MS.gene33651	0.816796	4.60E-52	-1.69E-46
MS.gene057893	MS.gene33651	-0.810613	1.06E-50	-1.69E-46
MS.gene058008	MS.gene33651	0.830484	2.86E-55	-1.69E-46
MS.gene058009	MS.gene33651	0.811004	8.69E-51	-1.69E-46
MS.gene058037	MS.gene33651	0.83112	2.00E-55	-1.69E-46
MS.gene058081	MS.gene33651	0.80227	6.08E-49	-1.69E-46
MS.gene058159	MS.gene33651	0.847643	1.02E-59	-1.69E-46
MS.gene058223	MS.gene33651	-0.828726	7.66E-55	-1.69E-46
MS.gene058279	MS.gene33651	0.839069	1.98E-57	-1.69E-46
MS.gene058429	MS.gene33651	0.803703	3.07E-49	-1.69E-46
MS.gene058498	MS.gene33651	0.81053	1.10E-50	-1.69E-46
MS.gene058592	MS.gene33651	0.813129	2.99E-51	-1.69E-46
MS.gene058625	MS.gene33651	0.814894	1.22E-51	-1.69E-46
MS.gene058781	MS.gene33651	0.81621	6.22E-52	-1.69E-46
MS.gene058783	MS.gene33651	0.81985	9.35E-53	-1.69E-46
MS.gene058897	MS.gene33651	0.829199	5.88E-55	-1.69E-46
MS.gene058979	MS.gene33651	0.835732	1.41E-56	-1.69E-46
MS.gene059170	MS.gene33651	0.813439	2.56E-51	-1.69E-46
MS.gene059224	MS.gene33651	0.811655	6.28E-51	-1.69E-46
MS.gene059272	MS.gene33651	0.805616	1.22E-49	-1.69E-46
MS.gene05952	MS.gene33651	0.861089	1.31E-63	-1.69E-46
MS.gene05954	MS.gene33651	0.818355	2.05E-52	-1.69E-46
MS.gene05985	MS.gene33651	-0.85574	5.15E-62	-1.69E-46
MS.gene059901	MS.gene33651	-0.806617	7.54E-50	-1.69E-46
MS.gene059935	MS.gene33651	0.821079	4.89E-53	-1.69E-46
MS.gene060011	MS.gene33651	0.81247	4.17E-51	-1.69E-46
MS.gene060012	MS.gene33651	0.846872	1.65E-59	-1.69E-46
MS.gene060257	MS.gene33651	0.804914	1.72E-49	-1.69E-46
MS.gene060258	MS.gene33651	0.821665	3.58E-53	-1.69E-46
MS.gene060259	MS.gene33651	0.825131	5.54E-54	-1.69E-46
MS.gene060365	MS.gene33651	0.841593	4.33E-58	-1.69E-46
MS.gene060373	MS.gene33651	0.815386	9.49E-52	-1.69E-46
MS.gene060412	MS.gene33651	0.863594	2.23E-64	-1.69E-46
MS.gene060435	MS.gene33651	0.806487	8.03E-50	-1.69E-46
MS.gene060520	MS.gene33651	0.819422	1.17E-52	-1.69E-46
MS.gene060521	MS.gene33651	0.823477	1.36E-53	-1.69E-46
MS.gene060527	MS.gene33651	0.817729	2.84E-52	-1.69E-46
MS.gene06052	MS.gene33651	0.801619	8.27E-49	-1.69E-46
MS.gene060572	MS.gene33651	0.822302	2.55E-53	-1.69E-46
MS.gene060634	MS.gene33651	-0.804032	2.62E-49	-1.69E-46
MS.gene060716	MS.gene33651	0.809133	2.20E-50	-1.69E-46
MS.gene060777	MS.gene33651	0.810427	1.16E-50	-1.69E-46
MS.gene060840	MS.gene33651	0.842346	2.73E-58	-1.69E-46
MS.gene060850	MS.gene33651	0.812194	4.79E-51	-1.69E-46
MS.gene060851	MS.gene33651	0.822594	2.18E-53	-1.69E-46
MS.gene060852	MS.gene33651	0.820958	5.21E-53	-1.69E-46
MS.gene060879	MS.gene33651	0.857592	1.47E-62	-1.69E-46
MS.gene060932	MS.gene33651	0.842274	2.86E-58	-1.69E-46
MS.gene060933	MS.gene33651	0.818671	1.74E-52	-1.69E-46
MS.gene060935	MS.gene33651	0.864549	1.12E-64	-1.69E-46
MS.gene060937	MS.gene33651	0.86459	1.09E-64	-1.69E-46
MS.gene061040	MS.gene33651	-0.809685	1.67E-50	-1.69E-46
MS.gene061188	MS.gene33651	0.83191	1.28E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33651.t1	MTR_1g029440	97.436	39	1	0	12	50	295	333	7.14e-22	85.1
MS.gene33651.t1	MTR_3g088975	76.923	39	9	0	12	50	294	332	1.92e-15	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 9 sgRNAs with CRISPR-Local

Find 12 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATCATCTTGAAGTTTATCT+TGG	0.335721	1.1:+15000312	MS.gene33651:CDS
GTGAATGGAAGATGGTGTTT+TGG	0.364119	1.1:+15000147	None:intergenic
GAATATTGATAAATCTGCTT+TGG	0.436731	1.1:+15000287	MS.gene33651:CDS
TTTGGTTATGTGGACAGAAC+AGG	0.440866	1.1:+15000165	MS.gene33651:CDS
GACGGCTAAGGATGTTCAAT+TGG	0.451421	1.1:+15000350	MS.gene33651:CDS
TGAACATCCTTAGCCGTCAA+TGG	0.485117	1.1:-15000345	None:intergenic
TGGAGAGTACGTTCCATTGA+CGG	0.487214	1.1:+15000332	MS.gene33651:CDS
GTACGTTCCATTGACGGCTA+AGG	0.558474	1.1:+15000338	MS.gene33651:CDS
TAGTGGTTGTGAATGGAAGA+TGG	0.630102	1.1:+15000139	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GAATATTGATAAATCTGCTT+TGG	+	chr1.1:15000287-15000306	MS.gene33651:CDS	25.0%
!!!	TTGTCTTGTTTGTTTTTGTT+TGG	+	chr1.1:15000213-15000232	MS.gene33651:intron	25.0%
	GATCATCTTGAAGTTTATCT+TGG	+	chr1.1:15000312-15000331	MS.gene33651:CDS	30.0%
!	TTTGCAAACTGTGCTTTATT+TGG	+	chr1.1:15000242-15000261	MS.gene33651:intron	30.0%
!!!	AAGATGGTGTTTTGGTTATG+TGG	+	chr1.1:15000155-15000174	MS.gene33651:CDS	35.0%
	ATGTGGACAGAACAGGTTAT+GGG	+	chr1.1:15000172-15000191	MS.gene33651:intron	40.0%
	TATGTGGACAGAACAGGTTA+TGG	+	chr1.1:15000171-15000190	MS.gene33651:intron	40.0%
	TTTGGTTATGTGGACAGAAC+AGG	+	chr1.1:15000165-15000184	MS.gene33651:CDS	40.0%
	GACGGCTAAGGATGTTCAAT+TGG	+	chr1.1:15000350-15000369	MS.gene33651:CDS	45.0%
	TGAACATCCTTAGCCGTCAA+TGG	-	chr1.1:15000348-15000367	None:intergenic	45.0%
!	TGGAGAGTACGTTCCATTGA+CGG	+	chr1.1:15000332-15000351	MS.gene33651:CDS	45.0%
	GTACGTTCCATTGACGGCTA+AGG	+	chr1.1:15000338-15000357	MS.gene33651:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	15000151	15000389	15000151	ID=MS.gene33651
chr1.1	mRNA	15000151	15000389	15000151	ID=MS.gene33651.t1;Parent=MS.gene33651
chr1.1	exon	15000151	15000186	15000151	ID=MS.gene33651.t1.exon1;Parent=MS.gene33651.t1
chr1.1	CDS	15000151	15000186	15000151	ID=cds.MS.gene33651.t1;Parent=MS.gene33651.t1
chr1.1	exon	15000273	15000389	15000273	ID=MS.gene33651.t1.exon2;Parent=MS.gene33651.t1
chr1.1	CDS	15000273	15000389	15000273	ID=cds.MS.gene33651.t1;Parent=MS.gene33651.t1

Gene Sequence	>MS.gene33651 ATGGAAGATGGTGTTTTGGTTATGTGGACAGAACAGGTTATGGGATACTATGTTTCTTGTTGTTGTCTTGTTTGTTTTTGTTTGGACTTGTTTTGCAAACTGTGCTTTATTTGGTTTGCAAGAGTTATCATCATGAGAATATTGATAAATCTGCTTTGGCTGATCATCTTGAAGTTTATCTTGGAGAGTACGTTCCATTGACGGCTAAGGATGTTCAATTGGAGAATTATCGTGTTTGA
Protein sequence	>MS.gene33651.t1 MEDGVLVMWTEQSYHHENIDKSALADHLEVYLGEYVPLTAKDVQLENYRV