AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055507

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055507.t1 MTR_3g099080 96.286 377 12 2 1 376 1 376 0.0 749
MS.gene055507.t1 MTR_8g096780 60.147 409 111 21 1 376 1 390 2.97e-140 404
MS.gene055507.t1 MTR_7g028740 34.080 402 204 13 1 376 1 367 6.01e-56 187
MS.gene055507.t1 MTR_4g109770 55.474 137 41 4 43 172 75 198 6.40e-39 145
MS.gene055507.t1 MTR_2g461920 51.034 145 66 2 43 187 122 261 1.27e-37 142
MS.gene055507.t1 MTR_5g046670 45.752 153 79 1 43 195 194 342 5.02e-37 140
MS.gene055507.t1 MTR_3g085180 50.000 126 61 2 83 206 151 276 9.99e-37 138
MS.gene055507.t1 MTR_7g444860 58.696 92 38 0 87 178 139 230 1.61e-33 127
MS.gene055507.t1 MTR_4g088555 57.000 100 40 1 71 170 40 136 1.72e-31 116
MS.gene055507.t1 MTR_8g080690 52.252 111 52 1 97 206 151 261 4.66e-31 121
MS.gene055507.t1 MTR_7g092930 64.935 77 27 0 97 173 68 144 5.39e-31 120
MS.gene055507.t1 MTR_1g053715 66.234 77 26 0 97 173 74 150 6.35e-31 120
MS.gene055507.t1 MTR_8g463140 64.103 78 28 0 97 174 65 142 9.21e-31 115
MS.gene055507.t1 MTR_1g035010 42.442 172 88 4 97 264 104 268 3.50e-30 122
MS.gene055507.t1 MTR_8g005960 68.421 76 24 0 97 172 187 262 6.99e-30 117
MS.gene055507.t1 MTR_2g014200 61.905 84 32 0 91 174 58 141 1.08e-29 112
MS.gene055507.t1 MTR_1g086250 55.000 100 43 1 83 182 133 230 2.19e-29 120
MS.gene055507.t1 MTR_2g046550 59.302 86 35 0 97 182 139 224 2.28e-29 120
MS.gene055507.t1 MTR_7g110320 50.450 111 52 2 72 182 121 228 1.13e-28 118
MS.gene055507.t1 MTR_7g110320 50.450 111 52 2 72 182 121 228 1.58e-28 117
MS.gene055507.t1 MTR_8g080680 33.607 244 127 8 97 330 132 350 3.05e-28 114
MS.gene055507.t1 MTR_2g078770 53.763 93 43 0 97 189 58 150 5.82e-28 108
MS.gene055507.t1 MTR_8g066240 55.102 98 44 0 40 137 5 102 2.37e-23 93.6
MS.gene055507.t1 MTR_8g080670 58.904 73 30 0 97 169 162 234 4.59e-23 100
MS.gene055507.t1 MTR_2g020620 49.231 65 33 0 106 170 99 163 1.87e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055507.t1 AT5G50670 39.702 403 172 17 1 376 1 359 8.52e-68 218
MS.gene055507.t1 AT5G50670 39.702 403 172 17 1 376 1 359 8.52e-68 218
MS.gene055507.t1 AT5G50570 39.702 403 172 17 1 376 1 359 8.52e-68 218
MS.gene055507.t1 AT5G50570 39.702 403 172 17 1 376 1 359 8.52e-68 218
MS.gene055507.t1 AT1G27370 53.636 110 48 2 64 172 144 251 6.69e-33 126
MS.gene055507.t1 AT1G27370 53.636 110 48 2 64 172 144 251 1.00e-32 126
MS.gene055507.t1 AT1G27370 53.636 110 48 2 64 172 144 251 1.00e-32 126
MS.gene055507.t1 AT1G27370 53.636 110 48 2 64 172 144 251 1.00e-32 126
MS.gene055507.t1 AT1G27370 53.636 110 48 2 64 172 144 251 1.00e-32 126
MS.gene055507.t1 AT1G27370 53.636 110 48 2 64 172 144 251 1.00e-32 126
MS.gene055507.t1 AT1G27370 53.636 110 48 2 64 172 144 251 1.00e-32 126
MS.gene055507.t1 AT1G69170 38.095 231 124 4 76 302 100 315 1.03e-32 127
MS.gene055507.t1 AT1G27360 54.630 108 44 2 66 172 147 250 1.33e-32 126
MS.gene055507.t1 AT1G27360 54.630 108 44 2 66 172 147 250 1.33e-32 126
MS.gene055507.t1 AT1G27360 54.630 108 44 2 66 172 147 250 1.33e-32 126
MS.gene055507.t1 AT1G27360 54.630 108 44 2 66 172 147 250 1.33e-32 126
MS.gene055507.t1 AT2G42200 62.963 81 30 0 97 177 74 154 7.23e-32 124
MS.gene055507.t1 AT1G76580 67.901 81 26 0 97 177 114 194 1.05e-31 127
MS.gene055507.t1 AT2G47070 67.089 79 26 0 97 175 106 184 1.06e-31 127
MS.gene055507.t1 AT1G76580 67.901 81 26 0 97 177 114 194 1.11e-31 127
MS.gene055507.t1 AT5G43270 63.750 80 29 0 94 173 166 245 1.42e-31 124
MS.gene055507.t1 AT5G43270 63.750 80 29 0 94 173 166 245 1.42e-31 124
MS.gene055507.t1 AT5G43270 63.750 80 29 0 94 173 166 245 1.42e-31 124
MS.gene055507.t1 AT1G76580 67.901 81 26 0 97 177 114 194 1.58e-31 126
MS.gene055507.t1 AT3G60030 63.855 83 30 0 94 176 124 206 1.87e-31 126
MS.gene055507.t1 AT3G57920 56.701 97 42 0 77 173 39 135 4.25e-31 121
MS.gene055507.t1 AT2G33810 64.865 74 26 0 97 170 54 127 2.16e-30 113
MS.gene055507.t1 AT1G02065 64.286 84 30 0 87 170 178 261 2.34e-30 119
MS.gene055507.t1 AT1G53160 55.670 97 42 1 97 193 54 149 2.93e-29 111
MS.gene055507.t1 AT1G53160 55.670 97 42 1 97 193 54 149 5.62e-29 111
MS.gene055507.t1 AT1G53160 55.670 97 42 1 97 193 54 149 5.62e-29 111
MS.gene055507.t1 AT1G20980 64.634 82 28 1 97 177 120 201 6.51e-29 119
MS.gene055507.t1 AT3G15270 60.811 74 29 0 97 170 63 136 2.35e-27 107
MS.gene055507.t1 AT2G47070 67.273 55 18 0 121 175 1 55 8.90e-19 88.6
MS.gene055507.t1 AT1G02065 60.345 58 23 0 87 144 178 235 1.51e-17 81.6
MS.gene055507.t1 AT5G18830 48.684 76 38 1 97 171 138 213 8.29e-17 82.8
MS.gene055507.t1 AT5G18830 48.684 76 38 1 97 171 138 213 9.74e-17 82.4
MS.gene055507.t1 AT5G18830 48.684 76 38 1 97 171 138 213 1.03e-16 82.4

Find 91 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTAGGTGTTGCAATTT+TGG 0.158488 3.2:-82452139 None:intergenic
ACCAACCTTACCTTGGTAAT+TGG 0.160259 3.2:-82453540 None:intergenic
AAAGCACCTTCTTGGGATTT+GGG 0.187536 3.2:+82451946 MS.gene055507:CDS
GTTGGCAGAACCTTTGTTTA+AGG 0.193299 3.2:-82452326 None:intergenic
GAAAGCACCTTCTTGGGATT+TGG 0.238938 3.2:+82451945 MS.gene055507:CDS
ATTTGATTCAAACCATTATC+AGG 0.300493 3.2:-82456479 None:intergenic
GGAATTTGAAAGCACCTTCT+TGG 0.318651 3.2:+82451938 MS.gene055507:CDS
TCTTCCATTGTTTCTATGTT+GGG 0.318840 3.2:-82451991 None:intergenic
GCAACACCTACTTCTTCTTC+AGG 0.325475 3.2:+82452147 MS.gene055507:CDS
ATGGAAGAATCAAACAGATT+TGG 0.341310 3.2:+82452006 MS.gene055507:CDS
GCCAAACCACACCTCTTCTT+AGG 0.344595 3.2:+82456363 MS.gene055507:CDS
TGATCACTCTCACTCCCATT+TGG 0.346060 3.2:-82456596 None:intergenic
TTCATGTAGGTTTCATTCGC+TGG 0.354772 3.2:+82453406 MS.gene055507:intron
TTCTTCCATTGTTTCTATGT+TGG 0.356796 3.2:-82451992 None:intergenic
GATCACTCTCACTCCCATTT+GGG 0.397635 3.2:-82456595 None:intergenic
CTCAACTATTTCCCTATCAA+TGG 0.401247 3.2:+82456672 MS.gene055507:CDS
GAATTTGAAAGCACCTTCTT+GGG 0.406706 3.2:+82451939 MS.gene055507:CDS
ATTTGAAGCTTGGTCAGGTT+GGG 0.406990 3.2:+82452061 MS.gene055507:CDS
GAACTTGCTGGTGTTGGTTG+TGG 0.413226 3.2:-82456232 None:intergenic
CAGACGCACACACCTGATAA+TGG 0.413957 3.2:+82456467 MS.gene055507:CDS
ACTCCAGAGGTTACAATTTG+TGG 0.417163 3.2:+82452303 MS.gene055507:CDS
GTAATTGTAGAGATTATCAT+AGG 0.418535 3.2:+82452250 MS.gene055507:CDS
CTACCAGCAGGTCGCGTGAT+AGG 0.419897 3.2:-82453509 None:intergenic
TCCTAAGAAGAGGTGTGGTT+TGG 0.425134 3.2:-82456364 None:intergenic
CAATTTGTGGCCTTAAACAA+AGG 0.433957 3.2:+82452316 MS.gene055507:CDS
CAGTTTCTTGTCTTGTGGAT+GGG 0.435642 3.2:+82452211 MS.gene055507:CDS
TTGGAGTTTATAAAATGAAA+GGG 0.436768 3.2:+82452025 MS.gene055507:CDS
GAAGGAGTGTTGGTCCCAAA+TGG 0.443655 3.2:+82456581 MS.gene055507:CDS
AGATTATCATAGGCGTCATA+AGG 0.456365 3.2:+82452260 MS.gene055507:CDS
GCAGGTCGCGTGATAGGTTC+AGG 0.457130 3.2:-82453503 None:intergenic
ACAGTTTCTTGTCTTGTGGA+TGG 0.459317 3.2:+82452210 MS.gene055507:CDS
AATGTCTCTTATGCAGCCCT+TGG 0.462202 3.2:+82456520 MS.gene055507:CDS
TGTTGATTTGAAGCTTGGTC+AGG 0.463472 3.2:+82452056 MS.gene055507:CDS
AAGCACCTTCTTGGGATTTG+GGG 0.465651 3.2:+82451947 MS.gene055507:CDS
CATGGCAGTAGAACTTGAAA+AGG 0.466360 3.2:-82456150 None:intergenic
AGCTGTAGGAAACGTTTAGA+TGG 0.466807 3.2:+82453452 MS.gene055507:CDS
AGGCCACAAATTGTAACCTC+TGG 0.469390 3.2:-82452306 None:intergenic
TTTGGAGTTTATAAAATGAA+AGG 0.469867 3.2:+82452024 MS.gene055507:CDS
TGGGACCAACACTCCTTCCA+TGG 0.470666 3.2:-82456576 None:intergenic
ATGTCTCTTATGCAGCCCTT+GGG 0.480370 3.2:+82456521 MS.gene055507:CDS
GGTTCTGCCAACAGTGTAGC+AGG 0.480510 3.2:+82452337 MS.gene055507:CDS
TAACAATAGCTTTGAGTCCA+TGG 0.485578 3.2:+82456559 MS.gene055507:CDS
TTGTTCCTCGTTGTATAACA+TGG 0.491290 3.2:+82456619 MS.gene055507:CDS
CGCGTGATAGGTTCAGGCTG+TGG 0.502946 3.2:-82453497 None:intergenic
CTCATTACTTCCTGTGAAAG+TGG 0.505406 3.2:+82456197 MS.gene055507:CDS
TATCAACCACATGAACTTGC+TGG 0.506816 3.2:-82456244 None:intergenic
TGATAATGGTTTGAATCAAA+TGG 0.506912 3.2:+82456481 MS.gene055507:CDS
TTGTATAACATGGGTTCTGA+TGG 0.507293 3.2:+82456629 MS.gene055507:CDS
TCAACTATTTCCCTATCAAT+GGG 0.507836 3.2:+82456673 MS.gene055507:CDS
ACTGCAACCACCTACGAAGA+AGG 0.508186 3.2:+82456290 MS.gene055507:CDS
TGAGTCCATGGAAGGAGTGT+TGG 0.509096 3.2:+82456571 MS.gene055507:CDS
GAACCTATCACGCGACCTGC+TGG 0.513292 3.2:+82453506 MS.gene055507:CDS
TTGCTACTTGTCCTAAGAAG+AGG 0.514720 3.2:-82456374 None:intergenic
ATTGACAGTTTCTTGTCTTG+TGG 0.515582 3.2:+82452206 MS.gene055507:CDS
AAGTTGTTTCCCTTCTTCGT+AGG 0.524258 3.2:-82456300 None:intergenic
GAAGATCCTGAAGAAGAAGT+AGG 0.539972 3.2:-82452153 None:intergenic
GTGAAGTCTACCACTTTCAC+AGG 0.545148 3.2:-82456207 None:intergenic
AGCACCTTCTTGGGATTTGG+GGG 0.546781 3.2:+82451948 MS.gene055507:CDS
TGTTCCTCGTTGTATAACAT+GGG 0.547164 3.2:+82456620 MS.gene055507:CDS
TTGTTTCCCTTCTTCGTAGG+TGG 0.548824 3.2:-82456297 None:intergenic
TGGAGTTTATAAAATGAAAG+GGG 0.553424 3.2:+82452026 MS.gene055507:CDS
AAGGAGTGTTGGTCCCAAAT+GGG 0.554973 3.2:+82456582 MS.gene055507:CDS
CTGCCATGGTGAATTCAGCT+TGG 0.557661 3.2:+82456165 MS.gene055507:CDS
CTGCAACCACCTACGAAGAA+GGG 0.560980 3.2:+82456291 MS.gene055507:CDS
CCACATGAACTTGCTGGTGT+TGG 0.568946 3.2:-82456238 None:intergenic
CCCTTGGGACTGAGTCTGCA+TGG 0.573686 3.2:+82456536 MS.gene055507:CDS
TGTGGTTTGGCTATGAAGTG+AGG 0.577121 3.2:-82456351 None:intergenic
ATTACCCAACATAGAAACAA+TGG 0.578453 3.2:+82451987 MS.gene055507:CDS
GTGGTTTGGCTATGAAGTGA+GGG 0.584332 3.2:-82456350 None:intergenic
GTGAATTCAGCTTGGAGTAG+CGG 0.589283 3.2:+82456173 MS.gene055507:CDS
GCATCATTAGACAAAGGAAG+TGG 0.590112 3.2:-82452105 None:intergenic
GATTTGAAGCTTGGTCAGGT+TGG 0.592453 3.2:+82452060 MS.gene055507:CDS
CATTGATAGGGAAATAGTTG+AGG 0.598793 3.2:-82456671 None:intergenic
AACTTGAAAAGGGTAGCACC+TGG 0.599492 3.2:-82456139 None:intergenic
ACCATGCAGACTCAGTCCCA+AGG 0.600324 3.2:-82456537 None:intergenic
ATATATACCTGCTACACTGT+TGG 0.601239 3.2:-82452344 None:intergenic
GACAGAAGAGAGAGAGCACA+AGG 0.601971 3.2:-82456437 None:intergenic
AATAGCTTTGAGTCCATGGA+AGG 0.603284 3.2:+82456563 MS.gene055507:CDS
ATGGCAGTAGAACTTGAAAA+GGG 0.604257 3.2:-82456149 None:intergenic
TGCATAAGAGACATTGAATG+AGG 0.607401 3.2:-82456512 None:intergenic
CCATGCAGACTCAGTCCCAA+GGG 0.628449 3.2:-82456536 None:intergenic
ATGGGTTCTGATGGATCACA+AGG 0.638864 3.2:+82456638 MS.gene055507:CDS
GCACCTTCTTGGGATTTGGG+GGG 0.648392 3.2:+82451949 MS.gene055507:CDS
ACTTGAAAAGGGTAGCACCT+GGG 0.652466 3.2:-82456138 None:intergenic
ACTTGTCCTAAGAAGAGGTG+TGG 0.652942 3.2:-82456369 None:intergenic
ACAACAGCATCATTAGACAA+AGG 0.660295 3.2:-82452111 None:intergenic
CCAACACCAGCAAGTTCATG+TGG 0.666058 3.2:+82456238 MS.gene055507:CDS
AGGAAGTGGTGATTGATCAG+TGG 0.671389 3.2:-82452091 None:intergenic
ACTTCATTCTAAGACTCCAG+AGG 0.672861 3.2:+82452290 MS.gene055507:CDS
ACTCCAAGCTGAATTCACCA+TGG 0.715980 3.2:-82456168 None:intergenic
AGAACCCATGTTATACAACG+AGG 0.772576 3.2:-82456624 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATAATATTATTGGT+AGG + chr3.2:82453957-82453976 MS.gene055507:intron 10.0%
!! ATATAATAATATTATTGGTA+GGG + chr3.2:82453958-82453977 MS.gene055507:intron 10.0%
!! TTATTTAATAAATCTAAAAG+AGG + chr3.2:82452663-82452682 MS.gene055507:intron 10.0%
!!! ATATATCATTATTTTGTTAA+TGG - chr3.2:82456040-82456059 None:intergenic 10.0%
!!! TTATTAAATAACTGATTTAT+CGG - chr3.2:82452654-82452673 None:intergenic 10.0%
!! ACAATATTTACTTATAAATG+TGG - chr3.2:82452584-82452603 None:intergenic 15.0%
!! ATATTATAGTCTAGATATAT+CGG - chr3.2:82452628-82452647 None:intergenic 15.0%
!! CAAATAAATATAACATCTAA+AGG + chr3.2:82454787-82454806 MS.gene055507:intron 15.0%
!! CATAATTACATTTAGTTATA+AGG + chr3.2:82453128-82453147 MS.gene055507:intron 15.0%
!! GAAAACATAGTTTAATTATA+TGG + chr3.2:82453234-82453253 MS.gene055507:intron 15.0%
!! GATAGAATAAAATTATAAAG+CGG - chr3.2:82453009-82453028 None:intergenic 15.0%
!! TAGATGTTATATTTATTTGA+TGG - chr3.2:82454786-82454805 None:intergenic 15.0%
!! TTGTACTTTAAATAAACTAA+TGG - chr3.2:82456075-82456094 None:intergenic 15.0%
!!! AATTTTAGAGATTAATTTGA+CGG - chr3.2:82452503-82452522 None:intergenic 15.0%
!!! TTTGAATTTTGATATTATGT+TGG - chr3.2:82455027-82455046 None:intergenic 15.0%
!! CAATTTCTCTTAAAAAACAT+TGG - chr3.2:82454018-82454037 None:intergenic 20.0%
!! CTTGGTTTAAAAAAAAACAA+GGG - chr3.2:82455447-82455466 None:intergenic 20.0%
!! GATAACATGAATTAGAAATT+AGG - chr3.2:82455760-82455779 None:intergenic 20.0%
!! GTAATATAATATGATGCATT+AGG + chr3.2:82455993-82456012 MS.gene055507:intron 20.0%
!! TAAAACCTTTCATAAGATTT+AGG - chr3.2:82454942-82454961 None:intergenic 20.0%
!! TCCTAAAAATTATGAAATAG+CGG - chr3.2:82454576-82454595 None:intergenic 20.0%
!! TTGGAGTTTATAAAATGAAA+GGG + chr3.2:82452025-82452044 MS.gene055507:CDS 20.0%
!! TTTGGTTAAAGAATAAAGAA+AGG - chr3.2:82452952-82452971 None:intergenic 20.0%
!!! CTGTCATAGTTTTAAAATTT+GGG - chr3.2:82455906-82455925 None:intergenic 20.0%
!!! CTGTTATATTTTATAGCTTA+GGG - chr3.2:82452426-82452445 None:intergenic 20.0%
!!! GGATTTAATGTTTTGAATTT+TGG - chr3.2:82455058-82455077 None:intergenic 20.0%
!!! TATTTTGTTAATGGCTAATA+AGG - chr3.2:82456031-82456050 None:intergenic 20.0%
!!! TCTGTCATAGTTTTAAAATT+TGG - chr3.2:82455907-82455926 None:intergenic 20.0%
!!! TCTGTTATATTTTATAGCTT+AGG - chr3.2:82452427-82452446 None:intergenic 20.0%
!!! TTAGTTTGTATATGCATTTA+TGG + chr3.2:82452828-82452847 MS.gene055507:intron 20.0%
!!! TTTCGTAATGTTTTGAATTT+TGG - chr3.2:82454992-82455011 None:intergenic 20.0%
!!! TTTGGAGTTTATAAAATGAA+AGG + chr3.2:82452024-82452043 MS.gene055507:CDS 20.0%
! AAAGGTAATTAAGATGCTAA+AGG - chr3.2:82452934-82452953 None:intergenic 25.0%
! AAATGCATAGTAGTTAATAG+CGG + chr3.2:82454489-82454508 MS.gene055507:intron 25.0%
! AATCTTAATTTCCTTCATGT+AGG + chr3.2:82453393-82453412 MS.gene055507:intron 25.0%
! AGATTAATTAATCGCATGAA+AGG - chr3.2:82454042-82454061 None:intergenic 25.0%
! ATAGGGAGTAATTAACTAAT+CGG + chr3.2:82454241-82454260 MS.gene055507:intron 25.0%
! ATATATTTCCGTATGTTTGT+GGG - chr3.2:82453820-82453839 None:intergenic 25.0%
! ATTTGATTCAAACCATTATC+AGG - chr3.2:82456482-82456501 None:intergenic 25.0%
! CAACATTTAATGCTTTCATT+GGG + chr3.2:82454291-82454310 MS.gene055507:intron 25.0%
! CCTAATAATTTCAGCATTAT+CGG + chr3.2:82453729-82453748 MS.gene055507:intron 25.0%
! CCTTGGTTTAAAAAAAAACA+AGG - chr3.2:82455448-82455467 None:intergenic 25.0%
! GTAATTGTAGAGATTATCAT+AGG + chr3.2:82452250-82452269 MS.gene055507:CDS 25.0%
! TATACTTATATCAGATGAGT+AGG + chr3.2:82453837-82453856 MS.gene055507:intron 25.0%
! TATATATTTCCGTATGTTTG+TGG - chr3.2:82453821-82453840 None:intergenic 25.0%
! TCTAATTCATGTTATCCTTA+AGG + chr3.2:82455764-82455783 MS.gene055507:intron 25.0%
! TGGAGTTTATAAAATGAAAG+GGG + chr3.2:82452026-82452045 MS.gene055507:CDS 25.0%
! TTATTCAGAGTAGTTAATAG+CGG - chr3.2:82455639-82455658 None:intergenic 25.0%
! TTCACGAGTAATAAAATAGA+TGG - chr3.2:82455952-82455971 None:intergenic 25.0%
! TTGAAGCTTCTATAAAGTTA+CGG - chr3.2:82454093-82454112 None:intergenic 25.0%
! TTGATGTATGTGGTTAAATA+GGG + chr3.2:82454224-82454243 MS.gene055507:intron 25.0%
! TTTATAGAAGCTTCAAATTC+AGG + chr3.2:82454097-82454116 MS.gene055507:intron 25.0%
! TTTCACGTAAAATGAAATAG+CGG + chr3.2:82455480-82455499 MS.gene055507:intron 25.0%
!! AAATAACTGATAGTGCAAAT+TGG + chr3.2:82455787-82455806 MS.gene055507:intron 25.0%
!! ATACATTGCCTAGATATTTT+GGG + chr3.2:82453623-82453642 MS.gene055507:intron 25.0%
!! GATAAACAAGATCATTTTCT+TGG + chr3.2:82456263-82456282 MS.gene055507:CDS 25.0%
!!! ACCGCTATTTCATAATTTTT+AGG + chr3.2:82454572-82454591 MS.gene055507:intron 25.0%
!!! ATTTGAAAAGTTGATGTATG+TGG + chr3.2:82454214-82454233 MS.gene055507:intron 25.0%
!!! CAATGAAAGCATTAAATGTT+GGG - chr3.2:82454292-82454311 None:intergenic 25.0%
!!! CCTTGTTTTTTTTTAAACCA+AGG + chr3.2:82455445-82455464 MS.gene055507:intron 25.0%
!!! TGATAATGGTTTGAATCAAA+TGG + chr3.2:82456481-82456500 MS.gene055507:CDS 25.0%
!!! TTTTACTGCTATACTTTTTC+AGG + chr3.2:82456113-82456132 MS.gene055507:intron 25.0%
AAATTAAGATTCAGGACTTG+AGG - chr3.2:82453384-82453403 None:intergenic 30.0%
AACCACCTAAATCTTATGAA+AGG + chr3.2:82454934-82454953 MS.gene055507:intron 30.0%
AACCTTTCATAAGATTTAGG+TGG - chr3.2:82454939-82454958 None:intergenic 30.0%
AACGCATTTCTCTCAAAAAA+CGG - chr3.2:82455337-82455356 None:intergenic 30.0%
AATTATGTAAGCATGTGTGT+CGG - chr3.2:82453115-82453134 None:intergenic 30.0%
ACAATCCTACAAAATTGACT+CGG - chr3.2:82455865-82455884 None:intergenic 30.0%
ACATAAGTTATGAACCAACT+TGG + chr3.2:82452732-82452751 MS.gene055507:intron 30.0%
ACTATGCATTTATTCTACGT+GGG - chr3.2:82454480-82454499 None:intergenic 30.0%
ACTCATCTTTAAGTAATCGA+TGG - chr3.2:82454361-82454380 None:intergenic 30.0%
AGAGAGAAACTGAAGTTATT+AGG + chr3.2:82455398-82455417 MS.gene055507:intron 30.0%
ATAGAGTATGAACAAAACAG+AGG + chr3.2:82455150-82455169 MS.gene055507:intron 30.0%
ATCTAAATGTCTCGTCTATT+AGG - chr3.2:82455692-82455711 None:intergenic 30.0%
ATGAAAGAAAAAGAAGCTGT+AGG + chr3.2:82453438-82453457 MS.gene055507:CDS 30.0%
ATGGAAGAATCAAACAGATT+TGG + chr3.2:82452006-82452025 MS.gene055507:CDS 30.0%
ATGTTTAATGACTACTTCCT+CGG + chr3.2:82452557-82452576 MS.gene055507:intron 30.0%
ATTACCCAACATAGAAACAA+TGG + chr3.2:82451987-82452006 MS.gene055507:CDS 30.0%
CAAAATCTCGATGAAATATC+AGG - chr3.2:82454135-82454154 None:intergenic 30.0%
CAATCAAAATCTGTTATTCC+CGG + chr3.2:82454715-82454734 MS.gene055507:intron 30.0%
CATATCTAGGCATATATAGT+TGG - chr3.2:82453770-82453789 None:intergenic 30.0%
CATGAAGGAAATTAAGATTC+AGG - chr3.2:82453392-82453411 None:intergenic 30.0%
CCAACATTTAATGCTTTCAT+TGG + chr3.2:82454290-82454309 MS.gene055507:intron 30.0%
CCGATAATGCTGAAATTATT+AGG - chr3.2:82453732-82453751 None:intergenic 30.0%
GAGAGAAACTGAAGTTATTA+GGG + chr3.2:82455399-82455418 MS.gene055507:intron 30.0%
GTTGATGTATGTGGTTAAAT+AGG + chr3.2:82454223-82454242 MS.gene055507:intron 30.0%
TACTATGCATTTATTCTACG+TGG - chr3.2:82454481-82454500 None:intergenic 30.0%
TAGGGAGTAATTAACTAATC+GGG + chr3.2:82454242-82454261 MS.gene055507:intron 30.0%
TAGTCACGTATATAAGCAAA+AGG + chr3.2:82454190-82454209 MS.gene055507:intron 30.0%
TATATTTCCGTATGTTTGTG+GGG - chr3.2:82453819-82453838 None:intergenic 30.0%
TCAACTATTTCCCTATCAAT+GGG + chr3.2:82456673-82456692 MS.gene055507:CDS 30.0%
TCTACAAACCCAAAATATCT+AGG - chr3.2:82453634-82453653 None:intergenic 30.0%
TGAAAATACAAGATTCTCCT+TGG - chr3.2:82455465-82455484 None:intergenic 30.0%
TGTTTATAAATGTGACCAGA+GGG + chr3.2:82452692-82452711 MS.gene055507:intron 30.0%
TGTTTATGAACAAAACAGAG+AGG + chr3.2:82455185-82455204 MS.gene055507:intron 30.0%
TTGTTTATAAATGTGACCAG+AGG + chr3.2:82452691-82452710 MS.gene055507:intron 30.0%
! ACACTTTCAATCTGAAATGT+CGG - chr3.2:82453049-82453068 None:intergenic 30.0%
! ACTGATTTCATATAGCATGT+GGG - chr3.2:82452452-82452471 None:intergenic 30.0%
! ATGTGTTGAGAGATTCTTTT+TGG - chr3.2:82452970-82452989 None:intergenic 30.0%
! CACTATCAGTTATTTCCTTA+AGG - chr3.2:82455782-82455801 None:intergenic 30.0%
! CATACATTGCCTAGATATTT+TGG + chr3.2:82453622-82453641 MS.gene055507:intron 30.0%
! CTGATATTTCATCGAGATTT+TGG + chr3.2:82454133-82454152 MS.gene055507:intron 30.0%
! TGAAGCAAACTCTTTTTGTT+TGG - chr3.2:82453992-82454011 None:intergenic 30.0%
! TTTCAGATTGAAAGTGTGTA+TGG + chr3.2:82453052-82453071 MS.gene055507:intron 30.0%
!! CAATTGAGTGTTAGTCTTAA+TGG - chr3.2:82453671-82453690 None:intergenic 30.0%
!! CCAATGAAAGCATTAAATGT+TGG - chr3.2:82454293-82454312 None:intergenic 30.0%
!! CGTAATGTTTTGAATTTTGG+TGG - chr3.2:82454989-82455008 None:intergenic 30.0%
!! TCTTCCATTGTTTCTATGTT+GGG - chr3.2:82451994-82452013 None:intergenic 30.0%
!! TTCTTCCATTGTTTCTATGT+TGG - chr3.2:82451995-82452014 None:intergenic 30.0%
!! TTTTGAGAGAAATGCGTTTT+GGG + chr3.2:82455339-82455358 MS.gene055507:intron 30.0%
!! TTTTTGAGAGAAATGCGTTT+TGG + chr3.2:82455338-82455357 MS.gene055507:intron 30.0%
!!! AGTTTTTTGTCCAATTACCA+AGG + chr3.2:82453530-82453549 MS.gene055507:CDS 30.0%
!!! CGGGTTTTAAATTTAGATGA+AGG + chr3.2:82453699-82453718 MS.gene055507:intron 30.0%
!!! TTTTCTGTTGATTTGAAGCT+TGG + chr3.2:82452051-82452070 MS.gene055507:CDS 30.0%
AAATGTCTCGTCTATTAGGT+AGG - chr3.2:82455688-82455707 None:intergenic 35.0%
AAGACTAACACTCAATTGTG+AGG + chr3.2:82453673-82453692 MS.gene055507:intron 35.0%
AAGCTTCTATAAAGTTACGG+TGG - chr3.2:82454090-82454109 None:intergenic 35.0%
ACAACAGCATCATTAGACAA+AGG - chr3.2:82452114-82452133 None:intergenic 35.0%
ACCACATTGTTTATCTTGAG+TGG + chr3.2:82453590-82453609 MS.gene055507:intron 35.0%
ACTACTTATAGGCTGGATTA+AGG + chr3.2:82454331-82454350 MS.gene055507:intron 35.0%
AGACATAAATGGACCAAATC+AGG - chr3.2:82453906-82453925 None:intergenic 35.0%
AGATTATCATAGGCGTCATA+AGG + chr3.2:82452260-82452279 MS.gene055507:CDS 35.0%
ATAGAGGATGAACAAAACAG+AGG + chr3.2:82455097-82455116 MS.gene055507:intron 35.0%
ATATATACCTGCTACACTGT+TGG - chr3.2:82452347-82452366 None:intergenic 35.0%
ATCTAGGCAATGTATGCAAA+TGG - chr3.2:82453618-82453637 None:intergenic 35.0%
ATGGCAGTAGAACTTGAAAA+GGG - chr3.2:82456152-82456171 None:intergenic 35.0%
ATTGACAGTTTCTTGTCTTG+TGG + chr3.2:82452206-82452225 MS.gene055507:CDS 35.0%
CATTGATAGGGAAATAGTTG+AGG - chr3.2:82456674-82456693 None:intergenic 35.0%
CCACGAAAATGACTACTTAT+AGG + chr3.2:82454320-82454339 MS.gene055507:intron 35.0%
CGTGAAAAAACATGTTCACA+AGG + chr3.2:82455966-82455985 MS.gene055507:intron 35.0%
CTCAACTATTTCCCTATCAA+TGG + chr3.2:82456672-82456691 MS.gene055507:CDS 35.0%
CTTAGACAAATGGCAATGTT+GGG + chr3.2:82454451-82454470 MS.gene055507:intron 35.0%
GAAAATGACTACTTATAGGC+TGG + chr3.2:82454324-82454343 MS.gene055507:intron 35.0%
GATAATACTAAACACAGCGA+AGG - chr3.2:82454856-82454875 None:intergenic 35.0%
GATATAGTAACTATTCCCTC+TGG - chr3.2:82452710-82452729 None:intergenic 35.0%
GCATGCATCAATTCATATCT+AGG - chr3.2:82453783-82453802 None:intergenic 35.0%
TAAAGATCCCCACAAACATA+CGG + chr3.2:82453809-82453828 MS.gene055507:intron 35.0%
TAGACGAGACATTTAGATTG+AGG + chr3.2:82455694-82455713 MS.gene055507:intron 35.0%
TATGAAGCCAACATGAACAA+TGG - chr3.2:82452892-82452911 None:intergenic 35.0%
TCCACTCAAGATAAACAATG+TGG - chr3.2:82453594-82453613 None:intergenic 35.0%
TCTAGGCAATGTATGCAAAT+GGG - chr3.2:82453617-82453636 None:intergenic 35.0%
TCTTAGACAAATGGCAATGT+TGG + chr3.2:82454450-82454469 MS.gene055507:intron 35.0%
TGCATAAGAGACATTGAATG+AGG - chr3.2:82456515-82456534 None:intergenic 35.0%
TGTTCCTCGTTGTATAACAT+GGG + chr3.2:82456620-82456639 MS.gene055507:CDS 35.0%
TGTTTAATGACTACTTCCTC+GGG + chr3.2:82452558-82452577 MS.gene055507:intron 35.0%
TTAATGCTTTCATTGGGAGT+TGG + chr3.2:82454297-82454316 MS.gene055507:intron 35.0%
TTCCATTCCATTGTTCATGT+TGG + chr3.2:82452882-82452901 MS.gene055507:intron 35.0%
TTGTTCCTCGTTGTATAACA+TGG + chr3.2:82456619-82456638 MS.gene055507:CDS 35.0%
TTTGTCCAATTACCAAGGTA+AGG + chr3.2:82453535-82453554 MS.gene055507:intron 35.0%
! ATTCTGCTCTCTGTTTCTTT+AGG - chr3.2:82455079-82455098 None:intergenic 35.0%
! CAATTTGTGGCCTTAAACAA+AGG + chr3.2:82452316-82452335 MS.gene055507:CDS 35.0%
! GACTGATTTCATATAGCATG+TGG - chr3.2:82452453-82452472 None:intergenic 35.0%
! TATCCCGCTATAGCATTTTT+GGG - chr3.2:82454537-82454556 None:intergenic 35.0%
! TGATTGGTTGAATTGTGTGT+CGG - chr3.2:82454701-82454720 None:intergenic 35.0%
! TTGTATAACATGGGTTCTGA+TGG + chr3.2:82456629-82456648 MS.gene055507:CDS 35.0%
! TTTAGATTGAGGTTTTCTCG+TGG + chr3.2:82455705-82455724 MS.gene055507:intron 35.0%
! TTTGAGAGAAATGCGTTTTG+GGG + chr3.2:82455340-82455359 MS.gene055507:intron 35.0%
!! AGAAGTAGGTGTTGCAATTT+TGG - chr3.2:82452142-82452161 None:intergenic 35.0%
!! CCTATAAGTAGTCATTTTCG+TGG - chr3.2:82454323-82454342 None:intergenic 35.0%
!! CGGGAATAACAGATTTTGAT+TGG - chr3.2:82454717-82454736 None:intergenic 35.0%
!! GAATTTGAAAGCACCTTCTT+GGG + chr3.2:82451939-82451958 MS.gene055507:CDS 35.0%
!! TAACAATAGCTTTGAGTCCA+TGG + chr3.2:82456559-82456578 MS.gene055507:CDS 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG + chr3.2:82454496-82454515 MS.gene055507:intron 35.0%
!!! TTTTGGGTTTGTAGATGAAG+TGG + chr3.2:82453639-82453658 MS.gene055507:intron 35.0%
AACACTCAATTGTGAGGTCT+CGG + chr3.2:82453679-82453698 MS.gene055507:intron 40.0%
AACTATCACTCTCTCCAAGT+TGG - chr3.2:82452749-82452768 None:intergenic 40.0%
AAGGCGCAAAGAATGAAAGA+AGG + chr3.2:82455374-82455393 MS.gene055507:intron 40.0%
AATTATAAAGCGGAACCTCC+AGG - chr3.2:82452999-82453018 None:intergenic 40.0%
ACAGTTTCTTGTCTTGTGGA+TGG + chr3.2:82452210-82452229 MS.gene055507:CDS 40.0%
ACTCCAGAGGTTACAATTTG+TGG + chr3.2:82452303-82452322 MS.gene055507:CDS 40.0%
ACTCTATCACCTTGCTCTAA+TGG - chr3.2:82454408-82454427 None:intergenic 40.0%
AGAAACAGAGAGCAGAATAG+AGG + chr3.2:82455081-82455100 MS.gene055507:intron 40.0%
AGAACCCATGTTATACAACG+AGG - chr3.2:82456627-82456646 None:intergenic 40.0%
AGCCAACATGAACAATGGAA+TGG - chr3.2:82452887-82452906 None:intergenic 40.0%
AGCGAATGAAACCTACATGA+AGG - chr3.2:82453407-82453426 None:intergenic 40.0%
AGCTGTAGGAAACGTTTAGA+TGG + chr3.2:82453452-82453471 MS.gene055507:CDS 40.0%
ATGGAAGCTAACATGAACAG+TGG - chr3.2:82452868-82452887 None:intergenic 40.0%
CAGTTTCTTGTCTTGTGGAT+GGG + chr3.2:82452211-82452230 MS.gene055507:CDS 40.0%
CATGGCAGTAGAACTTGAAA+AGG - chr3.2:82456153-82456172 None:intergenic 40.0%
CTCATTACTTCCTGTGAAAG+TGG + chr3.2:82456197-82456216 MS.gene055507:CDS 40.0%
CTCTCAACACATAAGAAACC+TGG + chr3.2:82452978-82452997 MS.gene055507:intron 40.0%
GAAGATCCTGAAGAAGAAGT+AGG - chr3.2:82452156-82452175 None:intergenic 40.0%
GAAGTTACAAAGCTGAGGAA+TGG + chr3.2:82455241-82455260 MS.gene055507:intron 40.0%
GACGTCAACTCTTAGACAAA+TGG + chr3.2:82454441-82454460 MS.gene055507:intron 40.0%
GCATCATTAGACAAAGGAAG+TGG - chr3.2:82452108-82452127 None:intergenic 40.0%
GCTAACATGAACAGTGGATA+AGG - chr3.2:82452862-82452881 None:intergenic 40.0%
GGCTAATAAGGAACATGCTT+AGG - chr3.2:82456019-82456038 None:intergenic 40.0%
GTATGTTTGTGGGGATCTTT+AGG - chr3.2:82453810-82453829 None:intergenic 40.0%
GTCAAGAAGTTACAAAGCTG+AGG + chr3.2:82455236-82455255 MS.gene055507:intron 40.0%
GTTGTCACAGACTAGTAACA+TGG - chr3.2:82453346-82453365 None:intergenic 40.0%
TATAGAAGAGAGCAAACACG+AGG + chr3.2:82455214-82455233 MS.gene055507:intron 40.0%
TATCAACCACATGAACTTGC+TGG - chr3.2:82456247-82456266 None:intergenic 40.0%
TATCTCATAACTCTACGCCA+TGG + chr3.2:82455552-82455571 MS.gene055507:intron 40.0%
TCAACACATAAGAAACCTGG+AGG + chr3.2:82452981-82453000 MS.gene055507:intron 40.0%
TCCAATTACCAAGGTAAGGT+TGG + chr3.2:82453539-82453558 MS.gene055507:intron 40.0%
TCTGTTATTCCCGGAAAACA+CGG + chr3.2:82454724-82454743 MS.gene055507:intron 40.0%
TTACTTATAAATGTGGCCCG+AGG - chr3.2:82452577-82452596 None:intergenic 40.0%
TTCATGTAGGTTTCATTCGC+TGG + chr3.2:82453406-82453425 MS.gene055507:intron 40.0%
TTGACGTGTTAATTCGTGAC+TGG + chr3.2:82453173-82453192 MS.gene055507:intron 40.0%
TTGGACAAAAAACTACCAGC+AGG - chr3.2:82453524-82453543 None:intergenic 40.0%
! AAAGCACCTTCTTGGGATTT+GGG + chr3.2:82451946-82451965 MS.gene055507:CDS 40.0%
! AAGTTGTTTCCCTTCTTCGT+AGG - chr3.2:82456303-82456322 None:intergenic 40.0%
! ACCAACCTTACCTTGGTAAT+TGG - chr3.2:82453543-82453562 None:intergenic 40.0%
! ACCTTCCGAGTCAATTTTGT+AGG + chr3.2:82455857-82455876 MS.gene055507:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - chr3.2:82454536-82454555 None:intergenic 40.0%
! ATTACCAAGGTAAGGTTGGT+TGG + chr3.2:82453543-82453562 MS.gene055507:intron 40.0%
! ATTTGAAGCTTGGTCAGGTT+GGG + chr3.2:82452061-82452080 MS.gene055507:CDS 40.0%
! CTATCCCGCTATAGCATTTT+TGG - chr3.2:82454538-82454557 None:intergenic 40.0%
! GATTGGTTGAATTGTGTGTC+GGG - chr3.2:82454700-82454719 None:intergenic 40.0%
! GCTGTGGTTTTCTTCTTCTT+CGG - chr3.2:82453484-82453503 None:intergenic 40.0%
! GTTGGCAGAACCTTTGTTTA+AGG - chr3.2:82452329-82452348 None:intergenic 40.0%
! TTGCTACTTGTCCTAAGAAG+AGG - chr3.2:82456377-82456396 None:intergenic 40.0%
!! AATAGCTTTGAGTCCATGGA+AGG + chr3.2:82456563-82456582 MS.gene055507:CDS 40.0%
!! ACTTCATTCTAAGACTCCAG+AGG + chr3.2:82452290-82452309 MS.gene055507:CDS 40.0%
!! GGAATTTGAAAGCACCTTCT+TGG + chr3.2:82451938-82451957 MS.gene055507:CDS 40.0%
!! TATTAGGTAGGAGAGCATCA+TGG - chr3.2:82455676-82455695 None:intergenic 40.0%
!! TCCTACAAAATTGACTCGGA+AGG - chr3.2:82455861-82455880 None:intergenic 40.0%
!! TGTTGATTTGAAGCTTGGTC+AGG + chr3.2:82452056-82452075 MS.gene055507:CDS 40.0%
!!! CTTTTCAAGTTCTACTGCCA+TGG + chr3.2:82456151-82456170 MS.gene055507:CDS 40.0%
!!! TTTTGGGGTGAGAAGATGAA+AGG + chr3.2:82455355-82455374 MS.gene055507:intron 40.0%
AAAGGGCTACCATTAGAGCA+AGG + chr3.2:82454396-82454415 MS.gene055507:intron 45.0%
AACCGCTATGCAATAAGCCA+TGG - chr3.2:82455572-82455591 None:intergenic 45.0%
AACTTGAAAAGGGTAGCACC+TGG - chr3.2:82456142-82456161 None:intergenic 45.0%
AAGCACCTTCTTGGGATTTG+GGG + chr3.2:82451947-82451966 MS.gene055507:CDS 45.0%
AATGTCTCTTATGCAGCCCT+TGG + chr3.2:82456520-82456539 MS.gene055507:CDS 45.0%
ACACTCAATTGTGAGGTCTC+GGG + chr3.2:82453680-82453699 MS.gene055507:intron 45.0%
ACTCCAAGCTGAATTCACCA+TGG - chr3.2:82456171-82456190 None:intergenic 45.0%
ACTTGAAAAGGGTAGCACCT+GGG - chr3.2:82456141-82456160 None:intergenic 45.0%
ACTTGTCCTAAGAAGAGGTG+TGG - chr3.2:82456372-82456391 None:intergenic 45.0%
AGGAAGTGGTGATTGATCAG+TGG - chr3.2:82452094-82452113 None:intergenic 45.0%
AGGCCACAAATTGTAACCTC+TGG - chr3.2:82452309-82452328 None:intergenic 45.0%
AGTTAATAGCGGCGCTATAG+CGG - chr3.2:82455628-82455647 None:intergenic 45.0%
ATAGATGAGTGCGCCTGATT+TGG + chr3.2:82453890-82453909 MS.gene055507:intron 45.0%
ATGTCTCTTATGCAGCCCTT+GGG + chr3.2:82456521-82456540 MS.gene055507:CDS 45.0%
ATGTGATTACGCAATGCCCT+TGG + chr3.2:82453867-82453886 MS.gene055507:intron 45.0%
CGACCCCAAAAATGCTATAG+CGG + chr3.2:82454530-82454549 MS.gene055507:intron 45.0%
CGAGTTTGAACACAAACGCA+AGG - chr3.2:82453303-82453322 None:intergenic 45.0%
CTAACCAACCAACCTTACCT+TGG - chr3.2:82453550-82453569 None:intergenic 45.0%
GACCCCAAAAATGCTATAGC+GGG + chr3.2:82454531-82454550 MS.gene055507:intron 45.0%
GATCACTCTCACTCCCATTT+GGG - chr3.2:82456598-82456617 None:intergenic 45.0%
GCAACACCTACTTCTTCTTC+AGG + chr3.2:82452147-82452166 MS.gene055507:CDS 45.0%
GCGTTTGTGTTCAAACTCGA+TGG + chr3.2:82453304-82453323 MS.gene055507:intron 45.0%
GGCGTAGAGTTATGAGATAG+CGG - chr3.2:82455551-82455570 None:intergenic 45.0%
GTGAAGTCTACCACTTTCAC+AGG - chr3.2:82456210-82456229 None:intergenic 45.0%
GTGAATTCAGCTTGGAGTAG+CGG + chr3.2:82456173-82456192 MS.gene055507:CDS 45.0%
GTTACAAAGCTGAGGAATGG+CGG + chr3.2:82455244-82455263 MS.gene055507:intron 45.0%
TAATGGTAGCCCTTTCCTCT+TGG - chr3.2:82454391-82454410 None:intergenic 45.0%
TGATCACTCTCACTCCCATT+TGG - chr3.2:82456599-82456618 None:intergenic 45.0%
TGGCTTATTGCATAGCGGTT+CGG + chr3.2:82455572-82455591 MS.gene055507:intron 45.0%
TGTCTAAGAGTTGACGTCCA+CGG - chr3.2:82454439-82454458 None:intergenic 45.0%
TTGTTTCCCTTCTTCGTAGG+TGG - chr3.2:82456300-82456319 None:intergenic 45.0%
! ATCTTGACTGCCGTGTTTTC+CGG - chr3.2:82454737-82454756 None:intergenic 45.0%
! ATGGGTTCTGATGGATCACA+AGG + chr3.2:82456638-82456657 MS.gene055507:CDS 45.0%
! GATTTGAAGCTTGGTCAGGT+TGG + chr3.2:82452060-82452079 MS.gene055507:CDS 45.0%
! GTATGGTGTTGAACACGAGT+TGG + chr3.2:82453069-82453088 MS.gene055507:intron 45.0%
! GTGGTTTGGCTATGAAGTGA+GGG - chr3.2:82456353-82456372 None:intergenic 45.0%
! TCCTAAGAAGAGGTGTGGTT+TGG - chr3.2:82456367-82456386 None:intergenic 45.0%
! TGTGGTTTGGCTATGAAGTG+AGG - chr3.2:82456354-82456373 None:intergenic 45.0%
!! AAGGAGTGTTGGTCCCAAAT+GGG + chr3.2:82456582-82456601 MS.gene055507:CDS 45.0%
!! ACTTCGGGAAGCTTTTTCTC+TGG - chr3.2:82454674-82454693 None:intergenic 45.0%
!! CGTGGACTTCAGTCATTTTG+TGG + chr3.2:82455723-82455742 MS.gene055507:intron 45.0%
!! GAAAGCACCTTCTTGGGATT+TGG + chr3.2:82451945-82451964 MS.gene055507:CDS 45.0%
!! TGTTGAACACGAGTTGGTGT+CGG + chr3.2:82453075-82453094 MS.gene055507:intron 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG - chr3.2:82454532-82454551 None:intergenic 45.0%
!!! CTATACTTTTTCAGGCACCC+AGG + chr3.2:82456121-82456140 MS.gene055507:intron 45.0%
!! CAATAATATTATTATATTAA+TGG - chr3.2:82453955-82453974 None:intergenic 5.0%
!! CATTAATATAATAATATTAT+TGG + chr3.2:82453953-82453972 MS.gene055507:intron 5.0%
!! TTAATTTCAAATTTAAATAT+AGG - chr3.2:82452390-82452409 None:intergenic 5.0%
!!! AGATTTTATTTTATTTTTTT+TGG + chr3.2:82454753-82454772 MS.gene055507:intron 5.0%
ACTGCAACCACCTACGAAGA+AGG + chr3.2:82456290-82456309 MS.gene055507:CDS 50.0%
AGATGAGTGAAACCGCCAAG+AGG + chr3.2:82454373-82454392 MS.gene055507:intron 50.0%
AGCACCTTCTTGGGATTTGG+GGG + chr3.2:82451948-82451967 MS.gene055507:CDS 50.0%
AGGCGCACTCATCTATCCAA+GGG - chr3.2:82453886-82453905 None:intergenic 50.0%
AGTGAAACCGCCAAGAGGAA+AGG + chr3.2:82454378-82454397 MS.gene055507:intron 50.0%
ATACCCCCCAAATCCCAAGA+AGG - chr3.2:82451955-82451974 None:intergenic 50.0%
CAGACGCACACACCTGATAA+TGG + chr3.2:82456467-82456486 MS.gene055507:CDS 50.0%
CCAACACCAGCAAGTTCATG+TGG + chr3.2:82456238-82456257 MS.gene055507:CDS 50.0%
CGCCATGGCTTATTGCATAG+CGG + chr3.2:82455567-82455586 MS.gene055507:intron 50.0%
CTGCAACCACCTACGAAGAA+GGG + chr3.2:82456291-82456310 MS.gene055507:CDS 50.0%
CTGCCATGGTGAATTCAGCT+TGG + chr3.2:82456165-82456184 MS.gene055507:CDS 50.0%
GAAATAGCGGTCATAGCGCT+AGG - chr3.2:82454563-82454582 None:intergenic 50.0%
GAAGCTGATCACGACTGACT+TGG - chr3.2:82454824-82454843 None:intergenic 50.0%
GAGCGCGACAGAGACATAAA+TGG - chr3.2:82453917-82453936 None:intergenic 50.0%
GCCAAACCACACCTCTTCTT+AGG + chr3.2:82456363-82456382 MS.gene055507:CDS 50.0%
GTGAAACCGCCAAGAGGAAA+GGG + chr3.2:82454379-82454398 MS.gene055507:intron 50.0%
TCGCGCTCATGGCAATCTAA+TGG + chr3.2:82453929-82453948 MS.gene055507:intron 50.0%
TTATGTCTCTGTCGCGCTCA+TGG + chr3.2:82453918-82453937 MS.gene055507:intron 50.0%
! ATGAGATAGCGGCGCAATAG+CGG - chr3.2:82455540-82455559 None:intergenic 50.0%
! GACAGAAGAGAGAGAGCACA+AGG - chr3.2:82456440-82456459 None:intergenic 50.0%
! GGATTTGGGGGGTATAGAAG+AGG + chr3.2:82451960-82451979 MS.gene055507:CDS 50.0%
! TCTTGACTGCCGTGTTTTCC+GGG - chr3.2:82454736-82454755 None:intergenic 50.0%
! TGAGTCCATGGAAGGAGTGT+TGG + chr3.2:82456571-82456590 MS.gene055507:CDS 50.0%
!! ATTGTGTGTCGGGAGCACTT+CGG - chr3.2:82454690-82454709 None:intergenic 50.0%
!! CCACATGAACTTGCTGGTGT+TGG - chr3.2:82456241-82456260 None:intergenic 50.0%
!! GAACTTGCTGGTGTTGGTTG+TGG - chr3.2:82456235-82456254 None:intergenic 50.0%
!! GAAGGAGTGTTGGTCCCAAA+TGG + chr3.2:82456581-82456600 MS.gene055507:CDS 50.0%
ACAAAGCTGAGGAATGGCGG+CGG + chr3.2:82455247-82455266 MS.gene055507:intron 55.0%
ACCATGCAGACTCAGTCCCA+AGG - chr3.2:82456540-82456559 None:intergenic 55.0%
CAGGCGCACTCATCTATCCA+AGG - chr3.2:82453887-82453906 None:intergenic 55.0%
CCATGCAGACTCAGTCCCAA+GGG - chr3.2:82456539-82456558 None:intergenic 55.0%
CTAAGAGTTGACGTCCACGG+CGG - chr3.2:82454436-82454455 None:intergenic 55.0%
GCACCTTCTTGGGATTTGGG+GGG + chr3.2:82451949-82451968 MS.gene055507:CDS 55.0%
GGTTCTGCCAACAGTGTAGC+AGG + chr3.2:82452337-82452356 MS.gene055507:CDS 55.0%
TAAGGAACGACGGCGGATGA+CGG + chr3.2:82455270-82455289 MS.gene055507:intron 55.0%
TGATAGAGTGAAAGCCGCCG+TGG + chr3.2:82454419-82454438 MS.gene055507:intron 55.0%
TGGGACCAACACTCCTTCCA+TGG - chr3.2:82456579-82456598 None:intergenic 55.0%
TGGTAGCCCTTTCCTCTTGG+CGG - chr3.2:82454388-82454407 None:intergenic 55.0%
! CATGTGTGTCGGCGTCATGT+TGG - chr3.2:82453104-82453123 None:intergenic 55.0%
!! TTGTGTGTCGGGAGCACTTC+GGG - chr3.2:82454689-82454708 None:intergenic 55.0%
ATGGCGGCGGTAAGGAACGA+CGG + chr3.2:82455260-82455279 MS.gene055507:intron 60.0%
CCCTTGGGACTGAGTCTGCA+TGG + chr3.2:82456536-82456555 MS.gene055507:CDS 60.0%
CGCGTGATAGGTTCAGGCTG+TGG - chr3.2:82453500-82453519 None:intergenic 60.0%
CTACCAGCAGGTCGCGTGAT+AGG - chr3.2:82453512-82453531 None:intergenic 60.0%
GAACCTATCACGCGACCTGC+TGG + chr3.2:82453506-82453525 MS.gene055507:CDS 60.0%
GCAGGTCGCGTGATAGGTTC+AGG - chr3.2:82453506-82453525 None:intergenic 60.0%
GCGGCTGCAACACTGCATAG+CGG - chr3.2:82455521-82455540 None:intergenic 60.0%
GGCGCTATAGCGGCCAATAG+CGG - chr3.2:82455618-82455637 None:intergenic 60.0%
GCTGAGGAATGGCGGCGGTA+AGG + chr3.2:82455252-82455271 MS.gene055507:intron 65.0%
! GGTGCGACGGCGGCGTTTTA+CGG + chr3.2:82455291-82455310 MS.gene055507:intron 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG + chr3.2:82454506-82454525 MS.gene055507:intron 65.0%
GCGGCGGTAAGGAACGACGG+CGG + chr3.2:82455263-82455282 MS.gene055507:intron 70.0%
! GACGGCGGATGACGGTGCGA+CGG + chr3.2:82455278-82455297 MS.gene055507:intron 70.0%
AGCGGCCAATAGCGGCCGCG+CGG - chr3.2:82455610-82455629 None:intergenic 75.0%
CCAATAGCGGCCGCGCGGTG+CGG - chr3.2:82455605-82455624 None:intergenic 75.0%
! GGCGGATGACGGTGCGACGG+CGG + chr3.2:82455281-82455300 MS.gene055507:intron 75.0%
! CCGCACCGCGCGGCCGCTAT+TGG + chr3.2:82455602-82455621 MS.gene055507:intron 80.0%
! CGGTACCGCACCGCACCGCG+CGG + chr3.2:82455592-82455611 MS.gene055507:intron 80.0%
! AGCGGCCGCGCGGTGCGGTG+CGG - chr3.2:82455600-82455619 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 82451931 82456700 82451931 ID=MS.gene055507
chr3.2 mRNA 82451931 82456700 82451931 ID=MS.gene055507.t1;Parent=MS.gene055507
chr3.2 exon 82451931 82452358 82451931 ID=MS.gene055507.t1.exon1;Parent=MS.gene055507.t1
chr3.2 CDS 82451931 82452358 82451931 ID=cds.MS.gene055507.t1;Parent=MS.gene055507.t1
chr3.2 exon 82453415 82453551 82453415 ID=MS.gene055507.t1.exon2;Parent=MS.gene055507.t1
chr3.2 CDS 82453415 82453551 82453415 ID=cds.MS.gene055507.t1;Parent=MS.gene055507.t1
chr3.2 exon 82456135 82456700 82456135 ID=MS.gene055507.t1.exon3;Parent=MS.gene055507.t1
chr3.2 CDS 82456135 82456700 82456135 ID=cds.MS.gene055507.t1;Parent=MS.gene055507.t1
Gene Sequence

>MS.gene055507

ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTTGGGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAGGTTGGGAACTCTGCCACTGATCAATCACCACTTCCTTTGTCTAATGATGCTGTTGTTGTCTCCAAAATTGCAACACCTACTTCTTCTTCAGGATCTTCTAAGAGAGCTAGAGCTATGAATAATGCAACATTGACAGTTTCTTGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCTAAGACTCCAGAGGTTACAATTTGTGGCCTTAAACAAAGGTTCTGCCAACAGTGTAGCAGGTATATATGCATCATCAGTATATCATATCCTATATTTAAATTTGAAATTAACGATTAATTTAATCCCTAAGCTATAAAATATAACAGATGCCCACATGCTATATGAAATCAGTCAATTTATTCTCTAAAGTAAACGAAAATCCGTCAAATTAATCTCTAAAATTTTAATAGTGATGACTAAATTGACAGATCTTATATATGTTTAATGACTACTTCCTCGGGCCACATTTATAAGTAAATATTGTTTTTTCAGATTTATTGAATAACCGATATATCTAGACTATAATATTATCCGATAAATCAGTTATTTAATAAATCTAAAAGAGGAATAGTTGTTTATAAATGTGACCAGAGGGAATAGTTACTATATCGAACATAAGTTATGAACCAACTTGGAGAGAGTGATAGTTAAGAAACAAAATTTATGTGCATTTCTAAAATAGTTCTAGATTGTTTGTAATTTCTTCTGTTAGTTTGTATATGCATTTATGGATTTGAATCCTTATCCACTGTTCATGTTAGCTTCCATTCCATTGTTCATGTTGGCTTCATAAGTACTATTGTTTGCTATACCTTTAGCATCTTAATTACCTTTCTTTATTCTTTAACCAAAAAGAATCTCTCAACACATAAGAAACCTGGAGGTTCCGCTTTATAATTTTATTCTATCATACAAACTATACAACACCGACATTTCAGATTGAAAGTGTGTATGGTGTTGAACACGAGTTGGTGTCGGACACCAACATGACGCCGACACACATGCTTACATAATTACATTTAGTTATAAGGTTCTCTCAAATTAACATCGACGTTGACGTGTTAATTCGTGACTGGTGTCTATAAATTTTTCATATGCATGCAAGTTTCATGCAGAAAACATAGTTTAATTATATGGTTTCTTTTAAAATTAATGTTCTTTAAGTTATAGTCTTATAGATCCTTGCGTTTGTGTTCAAACTCGATGGATCTCACATTCTTACACCATGTTACTAGTCTGTGACAACATGATAGTTGAAGTTCCTCAAGTCCTGAATCTTAATTTCCTTCATGTAGGTTTCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGAAGAAGAAGAAAACCACAGCCTGAACCTATCACGCGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGTAAGGTTGGTTGGTTAGCTTCTAGTTTAGTTATTTCAACCACATTGTTTATCTTGAGTGGACCCATTTGCATACATTGCCTAGATATTTTGGGTTTGTAGATGAAGTGGTAAACTCCATTAAGACTAACACTCAATTGTGAGGTCTCGGGTTTTAAATTTAGATGAAGGTGTTGAACCTAATAATTTCAGCATTATCGGTTGAAGTAGACTTTACCAACTATATATGCCTAGATATGAATTGATGCATGCGTTGCCTAAAGATCCCCACAAACATACGGAAATATATACTTATATCAGATGAGTAGGAAGCTTCATGTGATTACGCAATGCCCTTGGATAGATGAGTGCGCCTGATTTGGTCCATTTATGTCTCTGTCGCGCTCATGGCAATCTAATGGCCATTAATATAATAATATTATTGGTAGGGTACACATACCAAACAAAAAGAGTTTGCTTCACGACCAATGTTTTTTAAGAGAAATTGTCCTTTCATGCGATTAATTAATCTTCAAACTCGCATTCAAAAGCATGTTCCACCGTAACTTTATAGAAGCTTCAAATTCAGGCTTTTGTTTCAACCTGATATTTCATCGAGATTTTGGTGAAGTTGCTGCACAGTTATGAGACTCTCTCACGTAGTCACGTATATAAGCAAAAGGTATTTGAAAAGTTGATGTATGTGGTTAAATAGGGAGTAATTAACTAATCGGGTTAGACTCTTTCATAGTCTTAAATCCCAACATTTAATGCTTTCATTGGGAGTTGGCCACGAAAATGACTACTTATAGGCTGGATTAAGGTACTCCATCGATTACTTAAAGATGAGTGAAACCGCCAAGAGGAAAGGGCTACCATTAGAGCAAGGTGATAGAGTGAAAGCCGCCGTGGACGTCAACTCTTAGACAAATGGCAATGTTGGGAGTCCCACGTAGAATAAATGCATAGTAGTTAATAGCGGATAGCGGCGCGTAGCGGCCGACCCCAAAAATGCTATAGCGGGATAGCGCCTAGCGCTATGACCGCTATTTCATAATTTTTAGGACAAATTATATAAATAATACTATAAATTATAGACAAACATATATCTAATATAAAATTAAACAGCAGTGCTATATATCCAGAGAAAAAGCTTCCCGAAGTGCTCCCGACACACAATTCAACCAATCAAAATCTGTTATTCCCGGAAAACACGGCAGTCAAGATTTTATTTTATTTTTTTTGGAAGAAGTCCATCAAATAAATATAACATCTAAAGGCTATTATATTGCCAAGTCAGTCGTGATCAGCTTCACGAAGTTTCCTTCGCTGTGTTTAGTATTATCGAAAATTAAATATAACATTCAAATCTCATGACACATTCATAAATCACACAAAGTTACAAACCACCTAAATCTTATGAAAGGTTTTACTCAAAATCATTCAAAGTTACAAACCACCAAAATTCAAAACATTACGAAAGCTTTCAAGTCTCCAACATAATATCAAAATTCAAAAGTCTTAACCAAAATTCAAAACATTAAATCCTAAAGAAACAGAGAGCAGAATAGAGGATGAACAAAACAGAGGATGTTTGTGATATGTTTATGAACAAGCAGAATAGAGTATGAACAAAACAGAGGATGTTTGTGATATGTTTATGAACAAAACAGAGAGGAAGATTTATAGAAGAGAGCAAACACGAGGTCAAGAAGTTACAAAGCTGAGGAATGGCGGCGGTAAGGAACGACGGCGGATGACGGTGCGACGGCGGCGTTTTACGGTGAGAAGATGTACAGATCGTCCGTTTTTTGAGAGAAATGCGTTTTGGGGTGAGAAGATGAAAGGCGCAAAGAATGAAAGAAGGAAGAGAGAAACTGAAGTTATTAGGGTTTGACGAAAATGACAAAAATACCCTTGTTTTTTTTTAAACCAAGGAGAATCTTGTATTTTCACGTAAAATGAAATAGCGGTGCTAGACTGCAAAACCGCTATGCAGTGTTGCAGCCGCTATTGCGCCGCTATCTCATAACTCTACGCCATGGCTTATTGCATAGCGGTTCGGTACCGCACCGCACCGCGCGGCCGCTATTGGCCGCTATAGCGCCGCTATTAACTACTCTGAATAAATGTACTATGTAAGCCATGATGCTCTCCTACCTAATAGACGAGACATTTAGATTGAGGTTTTCTCGTGGACTTCAGTCATTTTGTGGTGTTGTGTCTACCTAATTTCTAATTCATGTTATCCTTAAGGAAATAACTGATAGTGCAAATTGGACATGATATGACTTGAATTTTGTTTACGTAAGTGAAAGACATTGCACACCTTCCGAGTCAATTTTGTAGGATTGTGTTAGTCTCAACTCTCAACCCAAATTTTAAAACTATGACAGAATATTTAAGATATGTTAGGCTACCATCTATTTTATTACTCGTGAAAAAACATGTTCACAAGGCTTTGTAATATAATATGATGCATTAGGCCTAAGCATGTTCCTTATTAGCCATTAACAAAATAATGATATATTTGTTAATCATTCCATTAGTTTATTTAAAGTACAAGTAATTCAATGTCTAAAATTTTACTGCTATACTTTTTCAGGCACCCAGGTGCTACCCTTTTCAAGTTCTACTGCCATGGTGAATTCAGCTTGGAGTAGCGGACTCATTACTTCCTGTGAAAGTGGTAGACTTCACATCCACAACCAACACCAGCAAGTTCATGTGGTTGATAAACAAGATCATTTTCTTGGTTCTACTGCAACCACCTACGAAGAAGGGAAACAACTTCAATTCTTACACAATGACAACAACAATCCCTCACTTCATAGCCAAACCACACCTCTTCTTAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAGCAACTTCAGTACACGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGATAATGGTTTGAATCAAATGGTGCAGCAGCCTCATTCAATGTCTCTTATGCAGCCCTTGGGACTGAGTCTGCATGGTAACAATAGCTTTGAGTCCATGGAAGGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCGTTGTATAACATGGGTTCTGATGGATCACAAGGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG
Protein sequence

>MS.gene055507.t1

MEWNLKAPSWDLGGIEEATLPNIETMEESNRFGVYKMKGEFSVDLKLGQVGNSATDQSPLPLSNDAVVVSKIATPTSSSGSSKRARAMNNATLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTICGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQVLPFSSSTAMVNSAWSSGLITSCESGRLHIHNQHQQVHVVDKQDHFLGSTATTYEEGKQLQFLHNDNNNPSLHSQTTPLLRTSSKMFCDSLATSVHESPCALSLLSSSQTHTPDNGLNQMVQQPHSMSLMQPLGLSLHGNNSFESMEGVLVPNGSESDHCSSLYNMGSDGSQGNDAPQLFPYQWE