Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40837.t1 | XP_003591151.1 | 90.6 | 371 | 34 | 1 | 75 | 445 | 59 | 428 | 1.60E-192 | 682.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40837.t1 | O82239 | 38.6 | 233 | 96 | 7 | 75 | 299 | 65 | 258 | 1.1e-35 | 152.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40837.t1 | G7I8Q2 | 90.6 | 371 | 34 | 1 | 75 | 445 | 59 | 428 | 1.2e-192 | 682.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene40837 | -0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene049297 | MS.gene40837 | -0.813036 | 3.14E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene40837 | -0.827428 | 1.57E-54 | -1.69E-46 |
| MS.gene049821 | MS.gene40837 | -0.815673 | 8.20E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene40837 | -0.849743 | 2.66E-60 | -1.69E-46 |
| MS.gene050020 | MS.gene40837 | -0.862584 | 4.57E-64 | -1.69E-46 |
| MS.gene050137 | MS.gene40837 | -0.809956 | 1.46E-50 | -1.69E-46 |
| MS.gene05016 | MS.gene40837 | -0.810294 | 1.24E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene40837 | -0.823014 | 1.74E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene40837 | -0.840184 | 1.01E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene40837 | -0.833896 | 4.10E-56 | -1.69E-46 |
| MS.gene050330 | MS.gene40837 | 0.835323 | 1.79E-56 | -1.69E-46 |
| MS.gene050438 | MS.gene40837 | -0.835992 | 1.21E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene40837 | -0.846685 | 1.86E-59 | -1.69E-46 |
| MS.gene050558 | MS.gene40837 | -0.829036 | 6.44E-55 | -1.69E-46 |
| MS.gene050586 | MS.gene40837 | -0.813769 | 2.16E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene40837 | 0.835543 | 1.58E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene40837 | -0.806803 | 6.89E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene40837 | -0.806255 | 8.99E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene40837 | -0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene40837 | -0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene40837 | -0.817163 | 3.80E-52 | -1.69E-46 |
| MS.gene050780 | MS.gene40837 | -0.826832 | 2.18E-54 | -1.69E-46 |
| MS.gene050787 | MS.gene40837 | -0.836628 | 8.37E-57 | -1.69E-46 |
| MS.gene050807 | MS.gene40837 | -0.879984 | 7.97E-70 | -1.69E-46 |
| MS.gene050808 | MS.gene40837 | -0.851722 | 7.38E-61 | -1.69E-46 |
| MS.gene050815 | MS.gene40837 | -0.842144 | 3.09E-58 | -1.69E-46 |
| MS.gene050826 | MS.gene40837 | -0.804319 | 2.29E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene40837 | -0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene051180 | MS.gene40837 | -0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene40837 | 0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene40837 | -0.823404 | 1.41E-53 | -1.69E-46 |
| MS.gene051265 | MS.gene40837 | -0.841528 | 4.50E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene40837 | -0.829467 | 5.07E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene40837 | -0.82322 | 1.56E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene40837 | -0.831717 | 1.42E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene40837 | -0.800812 | 1.21E-48 | -1.69E-46 |
| MS.gene052020 | MS.gene40837 | -0.814347 | 1.61E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene40837 | -0.802877 | 4.55E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene40837 | -0.804063 | 2.59E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene40837 | 0.828408 | 9.14E-55 | -1.69E-46 |
| MS.gene052361 | MS.gene40837 | 0.811681 | 6.20E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene40837 | -0.809037 | 2.31E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene40837 | -0.809257 | 2.07E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene40837 | -0.850398 | 1.74E-60 | -1.69E-46 |
| MS.gene052673 | MS.gene40837 | 0.846897 | 1.63E-59 | -1.69E-46 |
| MS.gene052863 | MS.gene40837 | -0.826524 | 2.59E-54 | -1.69E-46 |
| MS.gene052896 | MS.gene40837 | -0.828299 | 9.71E-55 | -1.69E-46 |
| MS.gene053054 | MS.gene40837 | 0.870853 | 1.07E-66 | -1.69E-46 |
| MS.gene053074 | MS.gene40837 | -0.833524 | 5.08E-56 | -1.69E-46 |
| MS.gene053221 | MS.gene40837 | -0.825056 | 5.77E-54 | -1.69E-46 |
| MS.gene053563 | MS.gene40837 | -0.829082 | 6.28E-55 | -1.69E-46 |
| MS.gene053630 | MS.gene40837 | -0.833958 | 3.95E-56 | -1.69E-46 |
| MS.gene053811 | MS.gene40837 | -0.805522 | 1.28E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene40837 | -0.820824 | 5.59E-53 | -1.69E-46 |
| MS.gene05414 | MS.gene40837 | -0.806927 | 6.48E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene40837 | -0.832918 | 7.19E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene40837 | -0.801457 | 8.92E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene40837 | 0.828692 | 7.80E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene40837 | -0.818706 | 1.70E-52 | -1.69E-46 |
| MS.gene054433 | MS.gene40837 | -0.828656 | 7.96E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene40837 | -0.822069 | 2.89E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene40837 | -0.827137 | 1.85E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene40837 | -0.822619 | 2.15E-53 | -1.69E-46 |
| MS.gene054559 | MS.gene40837 | -0.804338 | 2.27E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene40837 | -0.833027 | 6.75E-56 | -1.69E-46 |
| MS.gene054942 | MS.gene40837 | -0.832136 | 1.12E-55 | -1.69E-46 |
| MS.gene055227 | MS.gene40837 | -0.815026 | 1.14E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene40837 | -0.832979 | 6.94E-56 | -1.69E-46 |
| MS.gene055357 | MS.gene40837 | -0.85951 | 3.93E-63 | -1.69E-46 |
| MS.gene055358 | MS.gene40837 | -0.842175 | 3.04E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene40837 | -0.823864 | 1.10E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene40837 | -0.805969 | 1.03E-49 | -1.69E-46 |
| MS.gene055507 | MS.gene40837 | -0.801897 | 7.25E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene40837 | -0.802876 | 4.56E-49 | -1.69E-46 |
| MS.gene055815 | MS.gene40837 | 0.81707 | 3.99E-52 | -1.69E-46 |
| MS.gene055816 | MS.gene40837 | 0.82094 | 5.26E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene40837 | -0.83581 | 1.35E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene40837 | -0.816014 | 6.88E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene40837 | -0.82701 | 1.98E-54 | -1.69E-46 |
| MS.gene056069 | MS.gene40837 | 0.892918 | 1.02E-74 | -1.69E-46 |
| MS.gene056553 | MS.gene40837 | -0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene056643 | MS.gene40837 | -0.801267 | 9.76E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene40837 | -0.817427 | 3.32E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene40837 | -0.840304 | 9.42E-58 | -1.69E-46 |
| MS.gene057200 | MS.gene40837 | -0.818114 | 2.32E-52 | -1.69E-46 |
| MS.gene057395 | MS.gene40837 | -0.811156 | 8.06E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene40837 | -0.827151 | 1.83E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene40837 | -0.808016 | 3.81E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene40837 | -0.8139 | 2.03E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene40837 | -0.809066 | 2.27E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene40837 | -0.839702 | 1.35E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene40837 | -0.807593 | 4.69E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene40837 | -0.829597 | 4.71E-55 | -1.69E-46 |
| MS.gene058982 | MS.gene40837 | -0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene40837 | -0.830105 | 3.54E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene40837 | -0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene40837 | -0.803916 | 2.77E-49 | -1.69E-46 |
| MS.gene059569 | MS.gene40837 | -0.800973 | 1.12E-48 | -1.69E-46 |
| MS.gene059607 | MS.gene40837 | -0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene40837 | -0.81856 | 1.84E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene40837 | 0.892209 | 1.96E-74 | -1.69E-46 |
| MS.gene060322 | MS.gene40837 | -0.834864 | 2.34E-56 | -1.69E-46 |
| MS.gene060480 | MS.gene40837 | -0.827594 | 1.44E-54 | -1.69E-46 |
| MS.gene060572 | MS.gene40837 | -0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene40837 | -0.801654 | 8.13E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene40837 | 0.879656 | 1.04E-69 | -1.69E-46 |
| MS.gene060802 | MS.gene40837 | -0.800712 | 1.27E-48 | -1.69E-46 |
| MS.gene060803 | MS.gene40837 | -0.850883 | 1.27E-60 | -1.69E-46 |
| MS.gene060998 | MS.gene40837 | -0.82018 | 7.86E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene40837 | 0.837774 | 4.26E-57 | -1.69E-46 |
| MS.gene061114 | MS.gene40837 | 0.816495 | 5.37E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40837.t1 | MTR_1g083390 | 98.922 | 371 | 3 | 1 | 75 | 445 | 59 | 428 | 0.0 | 752 |
| MS.gene40837.t1 | MTR_7g112740 | 68.194 | 371 | 110 | 4 | 75 | 445 | 50 | 412 | 3.78e-166 | 474 |
| MS.gene40837.t1 | MTR_7g112740 | 62.803 | 371 | 104 | 5 | 75 | 445 | 50 | 386 | 1.98e-143 | 415 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40837.t1 | AT3G05545 | 49.025 | 359 | 136 | 17 | 75 | 409 | 64 | 399 | 4.69e-79 | 251 |
| MS.gene40837.t1 | AT2G47700 | 36.522 | 345 | 147 | 14 | 75 | 408 | 65 | 348 | 1.34e-49 | 172 |
| MS.gene40837.t1 | AT2G47700 | 39.738 | 229 | 85 | 9 | 75 | 292 | 65 | 251 | 3.87e-39 | 142 |
Find 150 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCAACAACTTTCGTTTA+AGG | 0.128049 | 1.2:-59933983 | MS.gene40837:CDS |
| GGTTCAGCATTCAATATAAA+AGG | 0.253162 | 1.2:-59941416 | MS.gene40837:CDS |
| GACCTGCTGTCTGCTCTTGC+TGG | 0.271730 | 1.2:+59948728 | None:intergenic |
| GTCTGTTGGGTGTGTGCTGC+TGG | 0.278935 | 1.2:+59948778 | None:intergenic |
| AGCAGTTGTCTGGCTGGTTT+TGG | 0.279904 | 1.2:+59948844 | None:intergenic |
| CAGTCATCCATGCTGAATTC+TGG | 0.287241 | 1.2:+59941320 | None:intergenic |
| AATTGTCGGAAGATTGAAAA+AGG | 0.289088 | 1.2:-59941377 | MS.gene40837:CDS |
| CTTATCCCGTCAAGTTCTTC+AGG | 0.313291 | 1.2:-59934155 | MS.gene40837:CDS |
| CATCCATCCTCCTCCAATTC+AGG | 0.337711 | 1.2:-59934959 | MS.gene40837:CDS |
| TGCAGTCATTTGGAGTTCAT+TGG | 0.343375 | 1.2:-59940642 | MS.gene40837:intron |
| TTTATGCATCCCTTTCTTGT+TGG | 0.343718 | 1.2:-59934701 | MS.gene40837:CDS |
| CCGCTAGTCAAAGGCCAGTC+AGG | 0.344997 | 1.2:-59934754 | MS.gene40837:CDS |
| TCCTTCAGCAGTTGTCTGGC+TGG | 0.347964 | 1.2:+59948838 | None:intergenic |
| AGCCTCCTTCAGCAGTTGTC+TGG | 0.355175 | 1.2:+59948834 | None:intergenic |
| AGCCAAGGTGATAGAGATTC+AGG | 0.356744 | 1.2:-59934053 | MS.gene40837:CDS |
| GATGCAGATCCTGATATAAT+TGG | 0.357139 | 1.2:-59935064 | MS.gene40837:intron |
| TGATACAGCTCCGCCTGAAT+TGG | 0.357890 | 1.2:+59934946 | None:intergenic |
| GCCCGCATTGTGGTTGAGTT+AGG | 0.363848 | 1.2:+59934278 | None:intergenic |
| GGAGTTCATTGGTGCCCATT+TGG | 0.365386 | 1.2:-59940631 | MS.gene40837:CDS |
| CCATTCCAATGGTTGAAGTT+AGG | 0.374138 | 1.2:+59934917 | None:intergenic |
| GGGCAATGGCTTTATGCTAA+TGG | 0.375917 | 1.2:-59941356 | MS.gene40837:CDS |
| TACCGAGTCGCTTTCATGCT+TGG | 0.381590 | 1.2:-59934106 | MS.gene40837:CDS |
| TTCTGTGGTGCTGTGGGTGG+CGG | 0.381890 | 1.2:+59948873 | None:intergenic |
| CTGTTCGGTTCTTGTCTGTT+GGG | 0.389985 | 1.2:+59948765 | None:intergenic |
| TGCCCGTATGTTGCTTACTT+TGG | 0.391036 | 1.2:-59934989 | MS.gene40837:CDS |
| CTGAAGAACTTGACGGGATA+AGG | 0.393601 | 1.2:+59934156 | None:intergenic |
| GCATGTTGTCCAATTATATC+AGG | 0.397854 | 1.2:+59935055 | None:intergenic |
| ACCGAGTCGCTTTCATGCTT+GGG | 0.399672 | 1.2:-59934105 | MS.gene40837:CDS |
| ATGCCTTAAACGAAAGTTGT+TGG | 0.400097 | 1.2:+59933980 | None:intergenic |
| TGCCAGAGCGGGTAGCTCAA+TGG | 0.400451 | 1.2:-59934393 | MS.gene40837:CDS |
| GCTGTTCGGTTCTTGTCTGT+TGG | 0.401364 | 1.2:+59948764 | None:intergenic |
| GGCTTTATGCTAATGGTTCT+CGG | 0.403781 | 1.2:-59941349 | MS.gene40837:CDS |
| AAATGGTTTCTGCAGTCATT+TGG | 0.407123 | 1.2:-59940652 | MS.gene40837:intron |
| ACCGTGACTGCTGGCTCGTC+GGG | 0.419567 | 1.2:+59934238 | None:intergenic |
| CGAGCATTGCTGCCAGGATA+AGG | 0.421117 | 1.2:+59934353 | None:intergenic |
| AAGTTGTTGGATCTGGTACT+TGG | 0.422418 | 1.2:+59933993 | None:intergenic |
| GCCAGAGCGGGTAGCTCAAT+GGG | 0.423509 | 1.2:-59934392 | MS.gene40837:CDS |
| TAAACGAAAGTTGTTGGATC+TGG | 0.424569 | 1.2:+59933986 | None:intergenic |
| GCCCATTGAGCTACCCGCTC+TGG | 0.428870 | 1.2:+59934391 | None:intergenic |
| GGTCTGACCGGTTCGCGGAT+TGG | 0.435931 | 1.2:+59934015 | None:intergenic |
| CATGAAAGCGACTCGGTAGA+TGG | 0.436397 | 1.2:+59934111 | None:intergenic |
| TGCAGTTCTGCTGCCAGAGC+GGG | 0.437404 | 1.2:-59934404 | MS.gene40837:intron |
| CGTCGGGCAACAGAAGAAAC+GGG | 0.438022 | 1.2:+59934254 | None:intergenic |
| ATCCCTTTCTTGTTGGCCAC+AGG | 0.440114 | 1.2:-59934694 | MS.gene40837:intron |
| ATCTGGTACTTGGGTCTGAC+CGG | 0.441514 | 1.2:+59934003 | None:intergenic |
| CACCGTGACTGCTGGCTCGT+CGG | 0.445484 | 1.2:+59934237 | None:intergenic |
| TGATCTTAGCTACTCTGAAA+TGG | 0.446810 | 1.2:-59941276 | MS.gene40837:intron |
| GTCGTGCCATGTTGCCAAAT+GGG | 0.453928 | 1.2:+59940617 | None:intergenic |
| TGCATAAAAGATCCTGATCT+TGG | 0.455989 | 1.2:+59934716 | None:intergenic |
| TGATAGAGTCCAAGCACTTC+AGG | 0.468635 | 1.2:-59934324 | MS.gene40837:CDS |
| GCTGAAGGAGGCTGTGCAAC+CGG | 0.470707 | 1.2:-59948824 | MS.gene40837:CDS |
| TTATGTCATGTAGATTGCAT+TGG | 0.472051 | 1.2:-59941437 | MS.gene40837:intron |
| GTCGGCTTTCTGTGGTGCTG+TGG | 0.475814 | 1.2:+59948866 | None:intergenic |
| GTACCTGTGGCCAACAAGAA+AGG | 0.477874 | 1.2:+59934691 | None:intergenic |
| TACAGCTCCGCCTGAATTGG+AGG | 0.479399 | 1.2:+59934949 | None:intergenic |
| TTTCTGCAGTGCTGTTCTGC+CGG | 0.480148 | 1.2:+59948805 | None:intergenic |
| TCAATGATCCCTCCTTATCC+TGG | 0.480471 | 1.2:-59934365 | MS.gene40837:CDS |
| CAGAATTCAGCATGGATGAC+TGG | 0.481270 | 1.2:-59941319 | MS.gene40837:CDS |
| ACATCTGAACCACCCCTGAC+TGG | 0.484638 | 1.2:+59934740 | None:intergenic |
| TGGATCTTCATTATCACAGT+TGG | 0.490022 | 1.2:-59934847 | MS.gene40837:CDS |
| TGATCTGGTGATGTGGCCAC+TGG | 0.492315 | 1.2:+59934194 | None:intergenic |
| AGTTGAACCACCGTGACTGC+TGG | 0.492769 | 1.2:+59934229 | None:intergenic |
| GGTTCAGATGTACCAAGATC+AGG | 0.493227 | 1.2:-59934728 | MS.gene40837:CDS |
| TCGGCTTTCTGTGGTGCTGT+GGG | 0.494231 | 1.2:+59948867 | None:intergenic |
| CGGTTCGCGGATTGGTGGTA+CGG | 0.495953 | 1.2:+59934023 | None:intergenic |
| CGCTAGTCAAAGGCCAGTCA+GGG | 0.497658 | 1.2:-59934753 | MS.gene40837:CDS |
| TGCTGCATTTGCTGAACATA+CGG | 0.498654 | 1.2:-59935035 | MS.gene40837:CDS |
| AACAACTTTCGTTTAAGGCA+TGG | 0.500049 | 1.2:-59933978 | MS.gene40837:CDS |
| GGATCTTCATTATCACAGTT+GGG | 0.502373 | 1.2:-59934846 | MS.gene40837:CDS |
| TCGTCGGGCAACAGAAGAAA+CGG | 0.505670 | 1.2:+59934253 | None:intergenic |
| AAAGTAAGCAACATACGGGC+AGG | 0.507918 | 1.2:+59934991 | None:intergenic |
| TAGGCTTACTCGAAAGATGA+TGG | 0.510811 | 1.2:+59940592 | None:intergenic |
| CGACTGCTTGCAGTAGAGAA+AGG | 0.511891 | 1.2:+59934809 | None:intergenic |
| AGTCGTGCCATGTTGCCAAA+TGG | 0.512759 | 1.2:+59940616 | None:intergenic |
| CGTACCACCAATCCGCGAAC+CGG | 0.515657 | 1.2:-59934022 | MS.gene40837:CDS |
| CAATGCAATGTCCTAATTGT+CGG | 0.518244 | 1.2:-59941391 | MS.gene40837:CDS |
| GCAGGAAATGTGTAGGAAGC+TGG | 0.521105 | 1.2:+59934872 | None:intergenic |
| CGGGCACGAGCATTGCTGCC+AGG | 0.522313 | 1.2:+59934347 | None:intergenic |
| TTGGTGCCCATTTGGCAACA+TGG | 0.526111 | 1.2:-59940623 | MS.gene40837:CDS |
| GCCCGACGAGCCAGCAGTCA+CGG | 0.526696 | 1.2:-59934239 | MS.gene40837:CDS |
| CAGAGTAGCTAAGATCATAT+AGG | 0.528717 | 1.2:+59941282 | None:intergenic |
| AACCAGCAAGAGCAGACAGC+AGG | 0.529231 | 1.2:-59948730 | MS.gene40837:intron |
| TTGGAGGAGGATGGATGTAT+TGG | 0.530302 | 1.2:+59934965 | None:intergenic |
| ACTTGGGTCTGACCGGTTCG+CGG | 0.531816 | 1.2:+59934010 | None:intergenic |
| TCCTAACTCAACCACAATGC+GGG | 0.531962 | 1.2:-59934279 | MS.gene40837:CDS |
| CGGTGTCACCCGCTAGTCAA+AGG | 0.532231 | 1.2:-59934763 | MS.gene40837:CDS |
| AAGAAACCACCACTTTGATC+TGG | 0.532283 | 1.2:+59934179 | None:intergenic |
| TACCTGTGGCCAACAAGAAA+GGG | 0.532318 | 1.2:+59934692 | None:intergenic |
| CTGACTGGCCTTTGACTAGC+GGG | 0.536730 | 1.2:+59934755 | None:intergenic |
| AGTTGTTGGATCTGGTACTT+GGG | 0.541944 | 1.2:+59933994 | None:intergenic |
| GATAGTATGCCTGAAGTGCT+TGG | 0.542324 | 1.2:+59934315 | None:intergenic |
| GCTTTCTGTGGTGCTGTGGG+TGG | 0.544080 | 1.2:+59948870 | None:intergenic |
| GGTCCAAAGTAAGCAACATA+CGG | 0.548575 | 1.2:+59934986 | None:intergenic |
| CCTTCATTGTCGTTGAGCCA+AGG | 0.551844 | 1.2:-59934068 | MS.gene40837:CDS |
| CCGCCTGAATTGGAGGAGGA+TGG | 0.555004 | 1.2:+59934956 | None:intergenic |
| AGTTGGTGCTGATCAGCCCT+CGG | 0.555676 | 1.2:-59934783 | MS.gene40837:CDS |
| TTCCTACACATTTCCTGCCG+TGG | 0.556162 | 1.2:-59934867 | MS.gene40837:CDS |
| GAAGTGCTTGGACTCTATCA+CGG | 0.556300 | 1.2:+59934327 | None:intergenic |
| TGCTTGCAGTAGAGAAAGGA+GGG | 0.557357 | 1.2:+59934813 | None:intergenic |
| AAGCACCTAACTTCAACCAT+TGG | 0.558104 | 1.2:-59934922 | MS.gene40837:CDS |
| TTACGTCCTGAAGAACTTGA+CGG | 0.561945 | 1.2:+59934149 | None:intergenic |
| ACTGCAAGCAGTCGTCTAGT+TGG | 0.566772 | 1.2:-59934800 | MS.gene40837:CDS |
| CCTTGGCTCAACGACAATGA+AGG | 0.567787 | 1.2:+59934068 | None:intergenic |
| TACGTCCTGAAGAACTTGAC+GGG | 0.568123 | 1.2:+59934150 | None:intergenic |
| TAGGAAGCTGGCATTTCACT+AGG | 0.568154 | 1.2:+59934884 | None:intergenic |
| AAGTGCTTGGACTCTATCAC+GGG | 0.574743 | 1.2:+59934328 | None:intergenic |
| GGGATGACTAGCAGATGATA+CGG | 0.579316 | 1.2:+59935012 | None:intergenic |
| ACCAGCCAGACAACTGCTGA+AGG | 0.581600 | 1.2:-59948839 | MS.gene40837:CDS |
| GTGTATTACCGATGTTGTGA+AGG | 0.583061 | 1.2:+59933942 | None:intergenic |
| GTCCAAAGTAAGCAACATAC+GGG | 0.588148 | 1.2:+59934987 | None:intergenic |
| TCAACGACAATGAAGGTAAG+TGG | 0.591021 | 1.2:+59934075 | None:intergenic |
| TGATAATGAAGATCCACGGC+AGG | 0.591704 | 1.2:+59934854 | None:intergenic |
| CCTGACTGGCCTTTGACTAG+CGG | 0.594423 | 1.2:+59934754 | None:intergenic |
| TGACTAGCGGGTGACACCGA+GGG | 0.598180 | 1.2:+59934767 | None:intergenic |
| GCATTGCTGCCAGGATAAGG+AGG | 0.599766 | 1.2:+59934356 | None:intergenic |
| AAGGTGATAGAGATTCAGGC+TGG | 0.604869 | 1.2:-59934049 | MS.gene40837:CDS |
| AGCCTGAATCTCTATCACCT+TGG | 0.605048 | 1.2:+59934051 | None:intergenic |
| CCTAACTTCAACCATTGGAA+TGG | 0.606132 | 1.2:-59934917 | MS.gene40837:CDS |
| AGCCAGACAACTGCTGAAGG+AGG | 0.606396 | 1.2:-59948836 | MS.gene40837:CDS |
| CTGCAGTTCTGCTGCCAGAG+CGG | 0.607367 | 1.2:-59934405 | MS.gene40837:intron |
| AGCTCCGCCTGAATTGGAGG+AGG | 0.614129 | 1.2:+59934952 | None:intergenic |
| TCTGGTGATGTGGCCACTGG+TGG | 0.614236 | 1.2:+59934197 | None:intergenic |
| CTGCTTGCAGTAGAGAAAGG+AGG | 0.623199 | 1.2:+59934812 | None:intergenic |
| TCCCAAGCATGAAAGCGACT+CGG | 0.629927 | 1.2:+59934104 | None:intergenic |
| CTGACCGGTTCGCGGATTGG+TGG | 0.629946 | 1.2:+59934018 | None:intergenic |
| ACCACTTTGATCTGGTGATG+TGG | 0.633241 | 1.2:+59934187 | None:intergenic |
| AAGTAAGCAACATACGGGCA+GGG | 0.633760 | 1.2:+59934992 | None:intergenic |
| TTGACTAGCGGGTGACACCG+AGG | 0.636852 | 1.2:+59934766 | None:intergenic |
| TTGACGCTGGGGTATGCATG+TGG | 0.637252 | 1.2:+59948905 | None:intergenic |
| AACTCAACTAACACCACCAG+TGG | 0.638606 | 1.2:-59934210 | MS.gene40837:CDS |
| ATCCACGGCAGGAAATGTGT+AGG | 0.639525 | 1.2:+59934865 | None:intergenic |
| GCACAGATGAGCCATTCCAA+TGG | 0.642442 | 1.2:+59934906 | None:intergenic |
| GTCATATCCAGAATTCAGCA+TGG | 0.655390 | 1.2:-59941327 | MS.gene40837:CDS |
| AGTCAAAGGCCAGTCAGGGG+TGG | 0.657830 | 1.2:-59934749 | MS.gene40837:CDS |
| CATTGCTGCCAGGATAAGGA+GGG | 0.659582 | 1.2:+59934357 | None:intergenic |
| CCATCCTCCTCCAATTCAGG+CGG | 0.664837 | 1.2:-59934956 | MS.gene40837:CDS |
| GGATGACTGGACGCATGATG+AGG | 0.669707 | 1.2:-59941306 | MS.gene40837:CDS |
| ATAGAATGCCTTCACAACAT+CGG | 0.671385 | 1.2:-59933950 | MS.gene40837:CDS |
| ACTGTGATAATGAAGATCCA+CGG | 0.675847 | 1.2:+59934850 | None:intergenic |
| ATCCTAACTCAACCACAATG+CGG | 0.678429 | 1.2:-59934280 | MS.gene40837:CDS |
| CAAACCCAAGAGTAATGACG+CGG | 0.680088 | 1.2:-59948945 | None:intergenic |
| GTCGGGCAACAGAAGAAACG+GGG | 0.684072 | 1.2:+59934255 | None:intergenic |
| GCTAGTCAAAGGCCAGTCAG+GGG | 0.689303 | 1.2:-59934752 | MS.gene40837:CDS |
| ACATCACCAGATCAAAGTGG+TGG | 0.698511 | 1.2:-59934185 | MS.gene40837:CDS |
| GCCACATCACCAGATCAAAG+TGG | 0.713425 | 1.2:-59934188 | MS.gene40837:CDS |
| GCTTGCAGTAGAGAAAGGAG+GGG | 0.719459 | 1.2:+59934814 | None:intergenic |
| AAACCCAAGAGTAATGACGC+GGG | 0.725157 | 1.2:-59948944 | None:intergenic |
| TCGGGCAACAGAAGAAACGG+GGG | 0.727112 | 1.2:+59934256 | None:intergenic |
| CGACGAGCCAGCAGTCACGG+TGG | 0.744778 | 1.2:-59934236 | MS.gene40837:CDS |
| GTTGAGTTAGGATGTTGCTG+CGG | 0.749322 | 1.2:+59934290 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59933947 | 59948953 | 59933947 | ID=MS.gene40837 |
| chr1.2 | mRNA | 59933947 | 59948953 | 59933947 | ID=MS.gene40837.t1;Parent=MS.gene40837 |
| chr1.2 | exon | 59948731 | 59948953 | 59948731 | ID=MS.gene40837.t1.exon1;Parent=MS.gene40837.t1 |
| chr1.2 | CDS | 59948731 | 59948953 | 59948731 | ID=cds.MS.gene40837.t1;Parent=MS.gene40837.t1 |
| chr1.2 | exon | 59941277 | 59941446 | 59941277 | ID=MS.gene40837.t1.exon2;Parent=MS.gene40837.t1 |
| chr1.2 | CDS | 59941277 | 59941446 | 59941277 | ID=cds.MS.gene40837.t1;Parent=MS.gene40837.t1 |
| chr1.2 | exon | 59940601 | 59940659 | 59940601 | ID=MS.gene40837.t1.exon3;Parent=MS.gene40837.t1 |
| chr1.2 | CDS | 59940601 | 59940659 | 59940601 | ID=cds.MS.gene40837.t1;Parent=MS.gene40837.t1 |
| chr1.2 | exon | 59935180 | 59935205 | 59935180 | ID=MS.gene40837.t1.exon4;Parent=MS.gene40837.t1 |
| chr1.2 | CDS | 59935180 | 59935205 | 59935180 | ID=cds.MS.gene40837.t1;Parent=MS.gene40837.t1 |
| chr1.2 | exon | 59934695 | 59935079 | 59934695 | ID=MS.gene40837.t1.exon5;Parent=MS.gene40837.t1 |
| chr1.2 | CDS | 59934695 | 59935079 | 59934695 | ID=cds.MS.gene40837.t1;Parent=MS.gene40837.t1 |
| chr1.2 | exon | 59933947 | 59934421 | 59933947 | ID=MS.gene40837.t1.exon6;Parent=MS.gene40837.t1 |
| chr1.2 | CDS | 59933947 | 59934421 | 59933947 | ID=cds.MS.gene40837.t1;Parent=MS.gene40837.t1 |
| Gene Sequence |
| Protein sequence |
