Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74373.t1 | XP_003628184.1 | 96.8 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 2.90E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74373.t1 | Q9SSK9 | 32.2 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 6.8e-17 | 88.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74373.t1 | B7FMF6 | 96.8 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 2.1e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene74373 | 0.803033 | 4.23E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene74373 | 0.813879 | 2.05E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene74373 | 0.813266 | 2.79E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene74373 | 0.818269 | 2.14E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene74373 | 0.808426 | 3.11E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene74373 | 0.824129 | 9.54E-54 | -1.69E-46 |
| MS.gene050021 | MS.gene74373 | 0.800135 | 1.66E-48 | -1.69E-46 |
| MS.gene050137 | MS.gene74373 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene74373 | 0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene050227 | MS.gene74373 | 0.803743 | 3.01E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene74373 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene74373 | 0.821242 | 4.48E-53 | -1.69E-46 |
| MS.gene050680 | MS.gene74373 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene74373 | 0.846951 | 1.57E-59 | -1.69E-46 |
| MS.gene050807 | MS.gene74373 | 0.844188 | 8.83E-59 | -1.69E-46 |
| MS.gene050808 | MS.gene74373 | 0.816842 | 4.49E-52 | -1.69E-46 |
| MS.gene050844 | MS.gene74373 | 0.801013 | 1.10E-48 | -1.69E-46 |
| MS.gene050959 | MS.gene74373 | 0.819222 | 1.30E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene74373 | 0.819468 | 1.14E-52 | -1.69E-46 |
| MS.gene051265 | MS.gene74373 | 0.838991 | 2.07E-57 | -1.69E-46 |
| MS.gene051344 | MS.gene74373 | 0.802742 | 4.86E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene74373 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene74373 | 0.858613 | 7.31E-63 | -1.69E-46 |
| MS.gene051720 | MS.gene74373 | 0.838675 | 2.50E-57 | -1.69E-46 |
| MS.gene051957 | MS.gene74373 | 0.804496 | 2.10E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene74373 | 0.818811 | 1.61E-52 | -1.69E-46 |
| MS.gene052190 | MS.gene74373 | 0.823536 | 1.31E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene74373 | 0.808589 | 2.88E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene74373 | 0.813633 | 2.32E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene74373 | 0.812053 | 5.14E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene74373 | 0.807713 | 4.42E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene74373 | 0.801645 | 8.17E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene74373 | 0.834581 | 2.76E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene74373 | 0.82053 | 6.53E-53 | -1.69E-46 |
| MS.gene052673 | MS.gene74373 | -0.822042 | 2.93E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene74373 | 0.82231 | 2.54E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene74373 | 0.818242 | 2.17E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene74373 | 0.809451 | 1.88E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene74373 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene74373 | 0.861645 | 8.87E-64 | -1.69E-46 |
| MS.gene053226 | MS.gene74373 | 0.812152 | 4.90E-51 | -1.69E-46 |
| MS.gene053883 | MS.gene74373 | 0.807673 | 4.51E-50 | -1.69E-46 |
| MS.gene053966 | MS.gene74373 | 0.808173 | 3.53E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene74373 | 0.806053 | 9.91E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene74373 | 0.809207 | 2.12E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene74373 | 0.811186 | 7.94E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene74373 | -0.848085 | 7.67E-60 | -1.69E-46 |
| MS.gene054467 | MS.gene74373 | 0.823956 | 1.05E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene74373 | 0.828936 | 6.81E-55 | -1.69E-46 |
| MS.gene054472 | MS.gene74373 | 0.804865 | 1.76E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene74373 | 0.81507 | 1.12E-51 | -1.69E-46 |
| MS.gene05468 | MS.gene74373 | 0.801589 | 8.39E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene74373 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene055227 | MS.gene74373 | 0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene74373 | 0.847704 | 9.77E-60 | -1.69E-46 |
| MS.gene055357 | MS.gene74373 | 0.818862 | 1.57E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene74373 | 0.863929 | 1.75E-64 | -1.69E-46 |
| MS.gene055465 | MS.gene74373 | 0.849707 | 2.72E-60 | -1.69E-46 |
| MS.gene055466 | MS.gene74373 | 0.858271 | 9.24E-63 | -1.69E-46 |
| MS.gene055468 | MS.gene74373 | 0.84944 | 3.23E-60 | -1.69E-46 |
| MS.gene055507 | MS.gene74373 | 0.80489 | 1.74E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene74373 | 0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene055608 | MS.gene74373 | 0.819166 | 1.34E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene74373 | 0.829343 | 5.43E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene74373 | 0.814004 | 1.92E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene74373 | 0.831855 | 1.32E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene74373 | 0.824564 | 7.54E-54 | -1.69E-46 |
| MS.gene056069 | MS.gene74373 | -0.818995 | 1.47E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene74373 | 0.815323 | 9.81E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene74373 | 0.803959 | 2.72E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene74373 | 0.801961 | 7.03E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene74373 | 0.816716 | 4.79E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene74373 | 0.837951 | 3.84E-57 | -1.69E-46 |
| MS.gene057314 | MS.gene74373 | 0.814523 | 1.48E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene74373 | 0.817576 | 3.07E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene74373 | 0.801129 | 1.04E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene74373 | 0.822102 | 2.83E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene74373 | 0.825059 | 5.76E-54 | -1.69E-46 |
| MS.gene058084 | MS.gene74373 | 0.806138 | 9.52E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene74373 | 0.827107 | 1.88E-54 | -1.69E-46 |
| MS.gene058636 | MS.gene74373 | 0.809265 | 2.06E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene74373 | 0.826952 | 2.05E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene74373 | 0.803195 | 3.91E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene74373 | 0.825645 | 4.19E-54 | -1.69E-46 |
| MS.gene059607 | MS.gene74373 | 0.807513 | 4.87E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene74373 | 0.808282 | 3.34E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene74373 | 0.80581 | 1.12E-49 | -1.69E-46 |
| MS.gene059863 | MS.gene74373 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene74373 | -0.828081 | 1.10E-54 | -1.69E-46 |
| MS.gene060167 | MS.gene74373 | 0.804458 | 2.14E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene74373 | 0.831074 | 2.05E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene74373 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene060553 | MS.gene74373 | 0.838751 | 2.39E-57 | -1.69E-46 |
| MS.gene060587 | MS.gene74373 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene74373 | -0.810173 | 1.31E-50 | -1.69E-46 |
| MS.gene060781 | MS.gene74373 | 0.825187 | 5.38E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene74373 | 0.815819 | 7.60E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene74373 | 0.834376 | 3.11E-56 | -1.69E-46 |
| MS.gene061040 | MS.gene74373 | -0.8301 | 3.55E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene74373 | -0.804927 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74373.t1 | MTR_8g045300 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 1.48e-111 | 313 |
| MS.gene74373.t1 | MTR_8g045520 | 75.641 | 156 | 38 | 0 | 1 | 156 | 1 | 156 | 4.01e-86 | 249 |
| MS.gene74373.t1 | MTR_8g045490 | 70.513 | 156 | 45 | 1 | 1 | 156 | 1 | 155 | 1.16e-82 | 240 |
| MS.gene74373.t1 | MTR_8g045570 | 71.523 | 151 | 43 | 0 | 1 | 151 | 1 | 151 | 1.39e-81 | 238 |
| MS.gene74373.t1 | MTR_8g045400 | 69.231 | 156 | 47 | 1 | 1 | 156 | 1 | 155 | 3.86e-79 | 231 |
| MS.gene74373.t1 | MTR_8g045555 | 68.874 | 151 | 47 | 0 | 1 | 151 | 1 | 151 | 7.94e-78 | 228 |
| MS.gene74373.t1 | MTR_8g045695 | 66.026 | 156 | 52 | 1 | 1 | 156 | 1 | 155 | 7.12e-77 | 226 |
| MS.gene74373.t1 | MTR_8g045735 | 66.452 | 155 | 51 | 1 | 1 | 155 | 1 | 154 | 8.10e-75 | 221 |
| MS.gene74373.t1 | MTR_8g045640 | 63.462 | 156 | 56 | 1 | 1 | 156 | 1 | 155 | 4.64e-71 | 211 |
| MS.gene74373.t1 | MTR_8g045665 | 63.462 | 156 | 56 | 1 | 1 | 156 | 1 | 155 | 7.94e-71 | 210 |
| MS.gene74373.t1 | MTR_8g045560 | 62.821 | 156 | 57 | 1 | 1 | 156 | 1 | 155 | 4.63e-70 | 208 |
| MS.gene74373.t1 | MTR_1g030810 | 42.208 | 154 | 86 | 2 | 1 | 152 | 1 | 153 | 8.29e-38 | 127 |
| MS.gene74373.t1 | MTR_1g030820 | 39.610 | 154 | 90 | 2 | 1 | 152 | 1 | 153 | 3.24e-36 | 122 |
| MS.gene74373.t1 | MTR_8g012550 | 32.667 | 150 | 98 | 3 | 6 | 154 | 8 | 155 | 6.61e-26 | 96.7 |
| MS.gene74373.t1 | MTR_1g030840 | 32.692 | 156 | 97 | 4 | 1 | 149 | 1 | 155 | 1.50e-21 | 85.5 |
| MS.gene74373.t1 | MTR_1g031640 | 34.694 | 147 | 87 | 5 | 7 | 151 | 7 | 146 | 8.10e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74373.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 1.21e-22 | 88.6 |
| MS.gene74373.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 1.21e-22 | 88.6 |
| MS.gene74373.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 7.23e-22 | 86.7 |
| MS.gene74373.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.50e-21 | 86.7 |
| MS.gene74373.t1 | AT1G70840 | 31.579 | 152 | 101 | 3 | 3 | 152 | 20 | 170 | 4.26e-21 | 84.7 |
| MS.gene74373.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 4.30e-21 | 86.7 |
| MS.gene74373.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.25e-20 | 86.7 |
| MS.gene74373.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 184 | 334 | 3.91e-19 | 82.4 |
| MS.gene74373.t1 | AT1G70890 | 30.921 | 152 | 102 | 3 | 3 | 152 | 7 | 157 | 2.25e-20 | 82.4 |
| MS.gene74373.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 137 | 287 | 1.85e-19 | 82.8 |
| MS.gene74373.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 4.25e-19 | 80.9 |
| MS.gene74373.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.01e-18 | 81.3 |
| MS.gene74373.t1 | AT1G70850 | 30.986 | 142 | 95 | 3 | 13 | 152 | 175 | 315 | 1.31e-17 | 78.2 |
| MS.gene74373.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.01e-18 | 81.3 |
| MS.gene74373.t1 | AT1G70850 | 30.986 | 142 | 95 | 3 | 13 | 152 | 175 | 315 | 1.31e-17 | 78.2 |
| MS.gene74373.t1 | AT1G23120 | 28.105 | 153 | 105 | 3 | 1 | 153 | 1 | 148 | 1.93e-18 | 77.0 |
| MS.gene74373.t1 | AT1G23120 | 28.758 | 153 | 102 | 4 | 3 | 153 | 51 | 198 | 1.13e-17 | 76.3 |
| MS.gene74373.t1 | AT1G23130 | 27.152 | 151 | 108 | 2 | 3 | 152 | 10 | 159 | 5.89e-17 | 73.6 |
| MS.gene74373.t1 | AT5G28000 | 28.947 | 152 | 105 | 3 | 3 | 152 | 13 | 163 | 1.64e-16 | 72.4 |
| MS.gene74373.t1 | AT1G70870 | 32.450 | 151 | 89 | 4 | 1 | 151 | 1 | 138 | 1.68e-16 | 72.0 |
| MS.gene74373.t1 | AT4G23670 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 5.89e-16 | 70.9 |
| MS.gene74373.t1 | AT1G70880 | 25.658 | 152 | 110 | 3 | 3 | 152 | 8 | 158 | 3.15e-15 | 68.9 |
| MS.gene74373.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 4.72e-15 | 68.6 |
| MS.gene74373.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 4.72e-15 | 68.6 |
| MS.gene74373.t1 | AT2G01520 | 27.632 | 152 | 107 | 3 | 1 | 151 | 1 | 150 | 1.38e-14 | 67.4 |
| MS.gene74373.t1 | AT1G14930 | 26.974 | 152 | 108 | 3 | 1 | 151 | 1 | 150 | 6.63e-14 | 65.5 |
| MS.gene74373.t1 | AT2G01530 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 1.68e-13 | 64.3 |
| MS.gene74373.t1 | AT1G35260 | 27.517 | 149 | 98 | 4 | 7 | 150 | 6 | 149 | 6.35e-13 | 62.8 |
| MS.gene74373.t1 | AT1G35310 | 26.761 | 142 | 101 | 3 | 13 | 153 | 12 | 151 | 9.69e-13 | 62.4 |
| MS.gene74373.t1 | AT4G14060 | 26.974 | 152 | 108 | 3 | 1 | 151 | 1 | 150 | 1.25e-12 | 62.0 |
| MS.gene74373.t1 | AT4G23680 | 25.658 | 152 | 110 | 3 | 1 | 151 | 1 | 150 | 2.55e-12 | 61.2 |
| MS.gene74373.t1 | AT1G30990 | 27.815 | 151 | 105 | 4 | 1 | 150 | 1 | 148 | 1.19e-11 | 59.7 |
| MS.gene74373.t1 | AT1G14940 | 26.490 | 151 | 108 | 3 | 1 | 150 | 1 | 149 | 1.41e-11 | 59.3 |
Find 21 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAACTTAGCACTGAAAT+TGG | 0.239596 | 8.4:+56001581 | MS.gene74373:CDS |
| AGGTATTCCATCCAACTATT+TGG | 0.260874 | 8.4:-56002979 | None:intergenic |
| ATGGCACTACTGCAGTTAAA+TGG | 0.307509 | 8.4:+56002917 | MS.gene74373:CDS |
| TTCATCACCTTGATGCAGCT+TGG | 0.437287 | 8.4:-56001690 | None:intergenic |
| GTAAACTTAGCACTGAAATT+GGG | 0.446714 | 8.4:+56001582 | MS.gene74373:CDS |
| AGAAATTGATGAGCACTATA+AGG | 0.468901 | 8.4:+56002858 | MS.gene74373:CDS |
| AAAATCGTCCACAAGATCTT+CGG | 0.479675 | 8.4:+56002832 | MS.gene74373:CDS |
| TATTCCATCCAACTATTTGG+AGG | 0.505271 | 8.4:-56002976 | None:intergenic |
| AGCTGCATCAAGGTGATGAA+TGG | 0.510022 | 8.4:+56001693 | MS.gene74373:CDS |
| TTTCTTCACCGAAGATCTTG+TGG | 0.512241 | 8.4:-56002840 | None:intergenic |
| CATCATTGAAGTGATTGATA+AGG | 0.521648 | 8.4:+56002891 | MS.gene74373:CDS |
| ATGTTGAACCTCCAAATAGT+TGG | 0.544310 | 8.4:+56002968 | MS.gene74373:CDS |
| CGATTTCACAACAGAGGGCA+AGG | 0.552186 | 8.4:+56002762 | MS.gene74373:intron |
| CATGAAACCAAGCTGCATCA+AGG | 0.562710 | 8.4:+56001683 | MS.gene74373:CDS |
| TGAACCTCCAAATAGTTGGA+TGG | 0.602941 | 8.4:+56002972 | MS.gene74373:CDS |
| TGTCTCGAGTGCATTTGCTA+AGG | 0.617854 | 8.4:-56002999 | None:intergenic |
| ACTCTGATTCAGTTAAACAC+TGG | 0.620261 | 8.4:+56001720 | MS.gene74373:CDS |
| TAGTTTGAAGAACTTGTCAG+AGG | 0.640528 | 8.4:-56001615 | None:intergenic |
| TCATCTTGTCAAGCAAGCAA+AGG | 0.651550 | 8.4:+56003029 | MS.gene74373:CDS |
| GAAGTGATTGATAAGGCTGA+TGG | 0.663192 | 8.4:+56002898 | MS.gene74373:CDS |
| AAACACTGGACTCATGTCCG+AGG | 0.721608 | 8.4:+56001734 | MS.gene74373:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCCAATAAAAATTAAAA+CGG | - | chr8.4:56002733-56002752 | None:intergenic | 10.0% |
| !!! | TGTTTACAATTTTTTTTTTT+GGG | + | chr8.4:56002567-56002586 | MS.gene74373:intron | 10.0% |
| !!! | TTGTTTACAATTTTTTTTTT+TGG | + | chr8.4:56002566-56002585 | MS.gene74373:intron | 10.0% |
| !! | AATAACATATTGCAAAATTT+GGG | + | chr8.4:56001973-56001992 | MS.gene74373:intron | 15.0% |
| !! | ACCATTAAATTAAAATTAGA+TGG | + | chr8.4:56002243-56002262 | MS.gene74373:intron | 15.0% |
| !! | AGTATAATTATAGAAACATA+TGG | - | chr8.4:56002666-56002685 | None:intergenic | 15.0% |
| !! | ATCATCATGATATATAAAAT+TGG | + | chr8.4:56002453-56002472 | MS.gene74373:intron | 15.0% |
| !! | ATTAGAAATATAATTTACCT+CGG | - | chr8.4:56001754-56001773 | None:intergenic | 15.0% |
| !!! | AGATGAATATTTTAATTGAA+CGG | + | chr8.4:56002336-56002355 | MS.gene74373:intron | 15.0% |
| !!! | ATAACCGTTTTAATTTTTAT+TGG | + | chr8.4:56002726-56002745 | MS.gene74373:intron | 15.0% |
| !!! | ATAATTTAAAACTATTTGGT+TGG | - | chr8.4:56002525-56002544 | None:intergenic | 15.0% |
| !!! | GTTTACAATTTTTTTTTTTG+GGG | + | chr8.4:56002568-56002587 | MS.gene74373:intron | 15.0% |
| !! | AACCAATCAACAATTAATAA+TGG | + | chr8.4:56002163-56002182 | MS.gene74373:intron | 20.0% |
| !! | ATTCAAGATCAATATCAATA+TGG | - | chr8.4:56002105-56002124 | None:intergenic | 20.0% |
| !! | CAATAACATATTGCAAAATT+TGG | + | chr8.4:56001972-56001991 | MS.gene74373:intron | 20.0% |
| !! | GATCTAAGTAAAAGATATAA+AGG | + | chr8.4:56002060-56002079 | MS.gene74373:intron | 20.0% |
| !! | TAAAAATATGACAGATCTAA+AGG | + | chr8.4:56002024-56002043 | MS.gene74373:intron | 20.0% |
| !! | TTCCATTATTAATTGTTGAT+TGG | - | chr8.4:56002168-56002187 | None:intergenic | 20.0% |
| !!! | GACATCTTTAAATTTCATTT+TGG | + | chr8.4:56001903-56001922 | MS.gene74373:intron | 20.0% |
| !!! | GCCATCTAATTTTAATTTAA+TGG | - | chr8.4:56002247-56002266 | None:intergenic | 20.0% |
| !!! | TATAAAATTGGTTGATTTGA+TGG | + | chr8.4:56002465-56002484 | MS.gene74373:intron | 20.0% |
| !!! | TTTAGATCTGTCATATTTTT+AGG | - | chr8.4:56002025-56002044 | None:intergenic | 20.0% |
| ! | ATTTCTAATAACACTAACAC+TGG | + | chr8.4:56001765-56001784 | MS.gene74373:intron | 25.0% |
| !!! | TTGTCTTCTGATTTTTAACT+TGG | + | chr8.4:56001830-56001849 | MS.gene74373:intron | 25.0% |
| AGAAATTGATGAGCACTATA+AGG | + | chr8.4:56002858-56002877 | MS.gene74373:CDS | 30.0% | |
| ATGTACAAGTACAACTACAA+AGG | + | chr8.4:56002365-56002384 | MS.gene74373:intron | 30.0% | |
| CATCATTGAAGTGATTGATA+AGG | + | chr8.4:56002891-56002910 | MS.gene74373:CDS | 30.0% | |
| GATATATATAGCAAGAGTGA+TGG | + | chr8.4:56002191-56002210 | MS.gene74373:intron | 30.0% | |
| ! | GTAAACTTAGCACTGAAATT+GGG | + | chr8.4:56001582-56001601 | MS.gene74373:CDS | 30.0% |
| ! | TTGATTTGATGGTTGGAATA+GGG | + | chr8.4:56002476-56002495 | MS.gene74373:intron | 30.0% |
| !! | AAACTATTTGGTTGGCTTTA+AGG | - | chr8.4:56002517-56002536 | None:intergenic | 30.0% |
| !! | AAATTGGTTGATTTGATGGT+TGG | + | chr8.4:56002469-56002488 | MS.gene74373:intron | 30.0% |
| !! | GCTTTAAGGATCTCTAATTT+AGG | - | chr8.4:56002503-56002522 | None:intergenic | 30.0% |
| !!! | ACTGGATTTATGTGCTATTT+TGG | + | chr8.4:56001783-56001802 | MS.gene74373:intron | 30.0% |
| AAAATCGTCCACAAGATCTT+CGG | + | chr8.4:56002832-56002851 | MS.gene74373:CDS | 35.0% | |
| ACTCTGATTCAGTTAAACAC+TGG | + | chr8.4:56001720-56001739 | MS.gene74373:CDS | 35.0% | |
| AGGTATTCCATCCAACTATT+TGG | - | chr8.4:56002982-56003001 | None:intergenic | 35.0% | |
| ATGTTGAACCTCCAAATAGT+TGG | + | chr8.4:56002968-56002987 | MS.gene74373:CDS | 35.0% | |
| TAGTTTGAAGAACTTGTCAG+AGG | - | chr8.4:56001618-56001637 | None:intergenic | 35.0% | |
| TATTCCATCCAACTATTTGG+AGG | - | chr8.4:56002979-56002998 | None:intergenic | 35.0% | |
| ! | GGTAAACTTAGCACTGAAAT+TGG | + | chr8.4:56001581-56001600 | MS.gene74373:CDS | 35.0% |
| ! | TGATTTGATGGTTGGAATAG+GGG | + | chr8.4:56002477-56002496 | MS.gene74373:intron | 35.0% |
| !! | ATAGCAAGAGTGATGGATTT+AGG | + | chr8.4:56002198-56002217 | MS.gene74373:intron | 35.0% |
| !! | GTTGATTTGATGGTTGGAAT+AGG | + | chr8.4:56002475-56002494 | MS.gene74373:intron | 35.0% |
| ACCTTCGATTTCACAACAGA+GGG | + | chr8.4:56002757-56002776 | MS.gene74373:intron | 40.0% | |
| ATGGCACTACTGCAGTTAAA+TGG | + | chr8.4:56002917-56002936 | MS.gene74373:CDS | 40.0% | |
| GAAGTGATTGATAAGGCTGA+TGG | + | chr8.4:56002898-56002917 | MS.gene74373:CDS | 40.0% | |
| TACCTTCGATTTCACAACAG+AGG | + | chr8.4:56002756-56002775 | MS.gene74373:intron | 40.0% | |
| TCATCTTGTCAAGCAAGCAA+AGG | + | chr8.4:56003029-56003048 | MS.gene74373:CDS | 40.0% | |
| TGAACCTCCAAATAGTTGGA+TGG | + | chr8.4:56002972-56002991 | MS.gene74373:CDS | 40.0% | |
| TTTCTTCACCGAAGATCTTG+TGG | - | chr8.4:56002843-56002862 | None:intergenic | 40.0% | |
| AGCTGCATCAAGGTGATGAA+TGG | + | chr8.4:56001693-56001712 | MS.gene74373:CDS | 45.0% | |
| CATGAAACCAAGCTGCATCA+AGG | + | chr8.4:56001683-56001702 | MS.gene74373:CDS | 45.0% | |
| TTCATCACCTTGATGCAGCT+TGG | - | chr8.4:56001693-56001712 | None:intergenic | 45.0% | |
| ! | TGTCTCGAGTGCATTTGCTA+AGG | - | chr8.4:56003002-56003021 | None:intergenic | 45.0% |
| !!! | AATAATAATTTAAAACTATT+TGG | - | chr8.4:56002529-56002548 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTAAGAAAAAATT+GGG | + | chr8.4:56002638-56002657 | MS.gene74373:intron | 5.0% |
| !!! | TTTTTTTTTTAAGAAAAAAT+TGG | + | chr8.4:56002637-56002656 | MS.gene74373:intron | 5.0% |
| AAACACTGGACTCATGTCCG+AGG | + | chr8.4:56001734-56001753 | MS.gene74373:CDS | 50.0% | |
| CGATTTCACAACAGAGGGCA+AGG | + | chr8.4:56002762-56002781 | MS.gene74373:intron | 50.0% | |
| GCCCTCTGTTGTGAAATCGA+AGG | - | chr8.4:56002761-56002780 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 56001569 | 56003062 | 56001569 | ID=MS.gene74373 |
| chr8.4 | mRNA | 56001569 | 56003062 | 56001569 | ID=MS.gene74373.t1;Parent=MS.gene74373 |
| chr8.4 | exon | 56001569 | 56001755 | 56001569 | ID=MS.gene74373.t1.exon1;Parent=MS.gene74373.t1 |
| chr8.4 | CDS | 56001569 | 56001755 | 56001569 | ID=cds.MS.gene74373.t1;Parent=MS.gene74373.t1 |
| chr8.4 | exon | 56002776 | 56003062 | 56002776 | ID=MS.gene74373.t1.exon2;Parent=MS.gene74373.t1 |
| chr8.4 | CDS | 56002776 | 56003062 | 56002776 | ID=cds.MS.gene74373.t1;Parent=MS.gene74373.t1 |
| Gene Sequence |
| Protein sequence |
