Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74370.t1 | XP_003628184.1 | 96.8 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 2.90E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74370.t1 | Q9SSK9 | 32.2 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 6.8e-17 | 88.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74370.t1 | B7FMF6 | 96.8 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 2.1e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene74370 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene049272 | MS.gene74370 | 0.801428 | 9.05E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene74370 | 0.813967 | 1.96E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene74370 | 0.809527 | 1.81E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene74370 | 0.818744 | 1.67E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene74370 | 0.810631 | 1.05E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene74370 | 0.820382 | 7.07E-53 | -1.69E-46 |
| MS.gene050021 | MS.gene74370 | 0.804743 | 1.87E-49 | -1.69E-46 |
| MS.gene050137 | MS.gene74370 | 0.805825 | 1.11E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene74370 | 0.802642 | 5.09E-49 | -1.69E-46 |
| MS.gene050251 | MS.gene74370 | 0.801353 | 9.37E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene74370 | 0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene74370 | 0.821981 | 3.02E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene74370 | 0.801292 | 9.65E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene74370 | 0.84749 | 1.12E-59 | -1.69E-46 |
| MS.gene050807 | MS.gene74370 | 0.839716 | 1.34E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene74370 | 0.812009 | 5.26E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene74370 | 0.80512 | 1.56E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene74370 | 0.817664 | 2.93E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene74370 | 0.81887 | 1.56E-52 | -1.69E-46 |
| MS.gene051265 | MS.gene74370 | 0.840104 | 1.06E-57 | -1.69E-46 |
| MS.gene051700 | MS.gene74370 | 0.809352 | 1.97E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene74370 | 0.858145 | 1.01E-62 | -1.69E-46 |
| MS.gene051720 | MS.gene74370 | 0.836222 | 1.06E-56 | -1.69E-46 |
| MS.gene051957 | MS.gene74370 | 0.80613 | 9.55E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene74370 | 0.820471 | 6.74E-53 | -1.69E-46 |
| MS.gene052190 | MS.gene74370 | 0.823895 | 1.08E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene74370 | 0.807305 | 5.39E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene74370 | 0.816466 | 5.45E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene74370 | 0.812017 | 5.24E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene74370 | 0.809525 | 1.81E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene74370 | 0.833403 | 5.44E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene74370 | 0.817008 | 4.12E-52 | -1.69E-46 |
| MS.gene052673 | MS.gene74370 | -0.818451 | 1.95E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene74370 | 0.824389 | 8.29E-54 | -1.69E-46 |
| MS.gene052896 | MS.gene74370 | 0.818824 | 1.60E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene74370 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene74370 | 0.808587 | 2.88E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene74370 | 0.86365 | 2.14E-64 | -1.69E-46 |
| MS.gene053226 | MS.gene74370 | 0.813508 | 2.47E-51 | -1.69E-46 |
| MS.gene053883 | MS.gene74370 | 0.812908 | 3.35E-51 | -1.69E-46 |
| MS.gene053966 | MS.gene74370 | 0.813848 | 2.08E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene74370 | 0.804168 | 2.46E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene74370 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene74370 | 0.808577 | 2.89E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene74370 | -0.850306 | 1.85E-60 | -1.69E-46 |
| MS.gene054467 | MS.gene74370 | 0.825922 | 3.60E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene74370 | 0.830282 | 3.21E-55 | -1.69E-46 |
| MS.gene054472 | MS.gene74370 | 0.802554 | 5.31E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene74370 | 0.816211 | 6.22E-52 | -1.69E-46 |
| MS.gene05468 | MS.gene74370 | 0.800652 | 1.30E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene74370 | 0.814484 | 1.50E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene74370 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene74370 | 0.847145 | 1.39E-59 | -1.69E-46 |
| MS.gene055357 | MS.gene74370 | 0.819585 | 1.08E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene74370 | 0.865267 | 6.68E-65 | -1.69E-46 |
| MS.gene055465 | MS.gene74370 | 0.851554 | 8.23E-61 | -1.69E-46 |
| MS.gene055466 | MS.gene74370 | 0.859528 | 3.89E-63 | -1.69E-46 |
| MS.gene055468 | MS.gene74370 | 0.85107 | 1.13E-60 | -1.69E-46 |
| MS.gene055507 | MS.gene74370 | 0.804528 | 2.07E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene74370 | 0.817071 | 3.99E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene74370 | 0.831018 | 2.12E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene74370 | 0.816024 | 6.84E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene74370 | 0.828218 | 1.02E-54 | -1.69E-46 |
| MS.gene05604 | MS.gene74370 | 0.826325 | 2.89E-54 | -1.69E-46 |
| MS.gene056069 | MS.gene74370 | -0.816222 | 6.18E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene74370 | 0.813413 | 2.59E-51 | -1.69E-46 |
| MS.gene056498 | MS.gene74370 | 0.805299 | 1.43E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene74370 | 0.800605 | 1.33E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene74370 | 0.817345 | 3.46E-52 | -1.69E-46 |
| MS.gene057027 | MS.gene74370 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene74370 | 0.836876 | 7.24E-57 | -1.69E-46 |
| MS.gene057314 | MS.gene74370 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene74370 | 0.817766 | 2.78E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene74370 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene74370 | 0.823468 | 1.36E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene74370 | 0.82754 | 1.48E-54 | -1.69E-46 |
| MS.gene058084 | MS.gene74370 | 0.80737 | 5.23E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene74370 | 0.827552 | 1.47E-54 | -1.69E-46 |
| MS.gene058636 | MS.gene74370 | 0.810414 | 1.17E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene74370 | 0.831509 | 1.60E-55 | -1.69E-46 |
| MS.gene05954 | MS.gene74370 | 0.825051 | 5.79E-54 | -1.69E-46 |
| MS.gene059607 | MS.gene74370 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene74370 | 0.809389 | 1.94E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene74370 | 0.805539 | 1.27E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene74370 | 0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene74370 | -0.824998 | 5.96E-54 | -1.69E-46 |
| MS.gene060167 | MS.gene74370 | 0.801812 | 7.55E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene74370 | 0.830512 | 2.82E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene74370 | 0.800109 | 1.68E-48 | -1.69E-46 |
| MS.gene060553 | MS.gene74370 | 0.847704 | 9.77E-60 | -1.69E-46 |
| MS.gene060572 | MS.gene74370 | 0.800762 | 1.24E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene74370 | 0.814167 | 1.77E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene74370 | -0.812278 | 4.59E-51 | -1.69E-46 |
| MS.gene060781 | MS.gene74370 | 0.828953 | 6.75E-55 | -1.69E-46 |
| MS.gene060802 | MS.gene74370 | 0.812742 | 3.64E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene74370 | 0.833614 | 4.82E-56 | -1.69E-46 |
| MS.gene061040 | MS.gene74370 | -0.830855 | 2.32E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene74370 | -0.803655 | 3.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74370.t1 | MTR_8g045300 | 96.815 | 157 | 5 | 0 | 1 | 157 | 1 | 157 | 1.48e-111 | 313 |
| MS.gene74370.t1 | MTR_8g045520 | 75.641 | 156 | 38 | 0 | 1 | 156 | 1 | 156 | 4.01e-86 | 249 |
| MS.gene74370.t1 | MTR_8g045490 | 70.513 | 156 | 45 | 1 | 1 | 156 | 1 | 155 | 1.16e-82 | 240 |
| MS.gene74370.t1 | MTR_8g045570 | 71.523 | 151 | 43 | 0 | 1 | 151 | 1 | 151 | 1.39e-81 | 238 |
| MS.gene74370.t1 | MTR_8g045400 | 69.231 | 156 | 47 | 1 | 1 | 156 | 1 | 155 | 3.86e-79 | 231 |
| MS.gene74370.t1 | MTR_8g045555 | 68.874 | 151 | 47 | 0 | 1 | 151 | 1 | 151 | 7.94e-78 | 228 |
| MS.gene74370.t1 | MTR_8g045695 | 66.026 | 156 | 52 | 1 | 1 | 156 | 1 | 155 | 7.12e-77 | 226 |
| MS.gene74370.t1 | MTR_8g045735 | 66.452 | 155 | 51 | 1 | 1 | 155 | 1 | 154 | 8.10e-75 | 221 |
| MS.gene74370.t1 | MTR_8g045640 | 63.462 | 156 | 56 | 1 | 1 | 156 | 1 | 155 | 4.64e-71 | 211 |
| MS.gene74370.t1 | MTR_8g045665 | 63.462 | 156 | 56 | 1 | 1 | 156 | 1 | 155 | 7.94e-71 | 210 |
| MS.gene74370.t1 | MTR_8g045560 | 62.821 | 156 | 57 | 1 | 1 | 156 | 1 | 155 | 4.63e-70 | 208 |
| MS.gene74370.t1 | MTR_1g030810 | 42.208 | 154 | 86 | 2 | 1 | 152 | 1 | 153 | 8.29e-38 | 127 |
| MS.gene74370.t1 | MTR_1g030820 | 39.610 | 154 | 90 | 2 | 1 | 152 | 1 | 153 | 3.24e-36 | 122 |
| MS.gene74370.t1 | MTR_8g012550 | 32.667 | 150 | 98 | 3 | 6 | 154 | 8 | 155 | 6.61e-26 | 96.7 |
| MS.gene74370.t1 | MTR_1g030840 | 32.692 | 156 | 97 | 4 | 1 | 149 | 1 | 155 | 1.50e-21 | 85.5 |
| MS.gene74370.t1 | MTR_1g031640 | 34.694 | 147 | 87 | 5 | 7 | 151 | 7 | 146 | 8.10e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74370.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 1.21e-22 | 88.6 |
| MS.gene74370.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 1.21e-22 | 88.6 |
| MS.gene74370.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 7.23e-22 | 86.7 |
| MS.gene74370.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.50e-21 | 86.7 |
| MS.gene74370.t1 | AT1G70840 | 31.579 | 152 | 101 | 3 | 3 | 152 | 20 | 170 | 4.26e-21 | 84.7 |
| MS.gene74370.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 4.30e-21 | 86.7 |
| MS.gene74370.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.25e-20 | 86.7 |
| MS.gene74370.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 184 | 334 | 3.91e-19 | 82.4 |
| MS.gene74370.t1 | AT1G70890 | 30.921 | 152 | 102 | 3 | 3 | 152 | 7 | 157 | 2.25e-20 | 82.4 |
| MS.gene74370.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 137 | 287 | 1.85e-19 | 82.8 |
| MS.gene74370.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 4.25e-19 | 80.9 |
| MS.gene74370.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.01e-18 | 81.3 |
| MS.gene74370.t1 | AT1G70850 | 30.986 | 142 | 95 | 3 | 13 | 152 | 175 | 315 | 1.31e-17 | 78.2 |
| MS.gene74370.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.01e-18 | 81.3 |
| MS.gene74370.t1 | AT1G70850 | 30.986 | 142 | 95 | 3 | 13 | 152 | 175 | 315 | 1.31e-17 | 78.2 |
| MS.gene74370.t1 | AT1G23120 | 28.105 | 153 | 105 | 3 | 1 | 153 | 1 | 148 | 1.93e-18 | 77.0 |
| MS.gene74370.t1 | AT1G23120 | 28.758 | 153 | 102 | 4 | 3 | 153 | 51 | 198 | 1.13e-17 | 76.3 |
| MS.gene74370.t1 | AT1G23130 | 27.152 | 151 | 108 | 2 | 3 | 152 | 10 | 159 | 5.89e-17 | 73.6 |
| MS.gene74370.t1 | AT5G28000 | 28.947 | 152 | 105 | 3 | 3 | 152 | 13 | 163 | 1.64e-16 | 72.4 |
| MS.gene74370.t1 | AT1G70870 | 32.450 | 151 | 89 | 4 | 1 | 151 | 1 | 138 | 1.68e-16 | 72.0 |
| MS.gene74370.t1 | AT4G23670 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 5.89e-16 | 70.9 |
| MS.gene74370.t1 | AT1G70880 | 25.658 | 152 | 110 | 3 | 3 | 152 | 8 | 158 | 3.15e-15 | 68.9 |
| MS.gene74370.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 4.72e-15 | 68.6 |
| MS.gene74370.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 4.72e-15 | 68.6 |
| MS.gene74370.t1 | AT2G01520 | 27.632 | 152 | 107 | 3 | 1 | 151 | 1 | 150 | 1.38e-14 | 67.4 |
| MS.gene74370.t1 | AT1G14930 | 26.974 | 152 | 108 | 3 | 1 | 151 | 1 | 150 | 6.63e-14 | 65.5 |
| MS.gene74370.t1 | AT2G01530 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 1.68e-13 | 64.3 |
| MS.gene74370.t1 | AT1G35260 | 27.517 | 149 | 98 | 4 | 7 | 150 | 6 | 149 | 6.35e-13 | 62.8 |
| MS.gene74370.t1 | AT1G35310 | 26.761 | 142 | 101 | 3 | 13 | 153 | 12 | 151 | 9.69e-13 | 62.4 |
| MS.gene74370.t1 | AT4G14060 | 26.974 | 152 | 108 | 3 | 1 | 151 | 1 | 150 | 1.25e-12 | 62.0 |
| MS.gene74370.t1 | AT4G23680 | 25.658 | 152 | 110 | 3 | 1 | 151 | 1 | 150 | 2.55e-12 | 61.2 |
| MS.gene74370.t1 | AT1G30990 | 27.815 | 151 | 105 | 4 | 1 | 150 | 1 | 148 | 1.19e-11 | 59.7 |
| MS.gene74370.t1 | AT1G14940 | 26.490 | 151 | 108 | 3 | 1 | 150 | 1 | 149 | 1.41e-11 | 59.3 |
Find 21 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAACTTAGCACTGAAAT+TGG | 0.239596 | 8.4:+55953513 | MS.gene74370:CDS |
| AGGTATTCCATCCAACTATT+TGG | 0.260874 | 8.4:-55954912 | None:intergenic |
| ATGGCACTACTGCAGTTAAA+TGG | 0.307509 | 8.4:+55954850 | MS.gene74370:CDS |
| TTCATCACCTTGATGCAGCT+TGG | 0.437287 | 8.4:-55953622 | None:intergenic |
| GTAAACTTAGCACTGAAATT+GGG | 0.446714 | 8.4:+55953514 | MS.gene74370:CDS |
| AGAAATTGATGAGCACTATA+AGG | 0.468901 | 8.4:+55954791 | MS.gene74370:CDS |
| AAAATCGTCCACAAGATCTT+CGG | 0.479675 | 8.4:+55954765 | MS.gene74370:CDS |
| TATTCCATCCAACTATTTGG+AGG | 0.505271 | 8.4:-55954909 | None:intergenic |
| AGCTGCATCAAGGTGATGAA+TGG | 0.510022 | 8.4:+55953625 | MS.gene74370:CDS |
| TTTCTTCACCGAAGATCTTG+TGG | 0.512241 | 8.4:-55954773 | None:intergenic |
| CATCATTGAAGTGATTGATA+AGG | 0.521648 | 8.4:+55954824 | MS.gene74370:CDS |
| ATGTTGAACCTCCAAATAGT+TGG | 0.544310 | 8.4:+55954901 | MS.gene74370:CDS |
| CGATTTCACAACAGAGGGCA+AGG | 0.552186 | 8.4:+55954695 | MS.gene74370:intron |
| CATGAAACCAAGCTGCATCA+AGG | 0.562710 | 8.4:+55953615 | MS.gene74370:CDS |
| TGAACCTCCAAATAGTTGGA+TGG | 0.602941 | 8.4:+55954905 | MS.gene74370:CDS |
| TGTCTCGAGTGCATTTGCTA+AGG | 0.617854 | 8.4:-55954932 | None:intergenic |
| ACTCTGATTCAGTTAAACAC+TGG | 0.620261 | 8.4:+55953652 | MS.gene74370:CDS |
| TAGTTTGAAGAACTTGTCAG+AGG | 0.640528 | 8.4:-55953547 | None:intergenic |
| TCATCTTGTCAAGCAAGCAA+AGG | 0.651550 | 8.4:+55954962 | MS.gene74370:CDS |
| GAAGTGATTGATAAGGCTGA+TGG | 0.663192 | 8.4:+55954831 | MS.gene74370:CDS |
| AAACACTGGACTCATGTCCG+AGG | 0.721608 | 8.4:+55953666 | MS.gene74370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCCAATAAAAATTAAAA+CGG | - | chr8.4:55954666-55954685 | None:intergenic | 10.0% |
| !!! | GTTTACAATTTTTTTTTTTT+GGG | + | chr8.4:55954500-55954519 | MS.gene74370:intron | 10.0% |
| !!! | TGTTTACAATTTTTTTTTTT+TGG | + | chr8.4:55954499-55954518 | MS.gene74370:intron | 10.0% |
| !!! | TTTACAATTTTTTTTTTTTG+GGG | + | chr8.4:55954501-55954520 | MS.gene74370:intron | 10.0% |
| !! | AATAACATATTGCAAAATTT+GGG | + | chr8.4:55953905-55953924 | MS.gene74370:intron | 15.0% |
| !! | ACCATTAAATTAAAATTAGA+TGG | + | chr8.4:55954175-55954194 | MS.gene74370:intron | 15.0% |
| !! | AGTATAATTATAGAAACATA+TGG | - | chr8.4:55954599-55954618 | None:intergenic | 15.0% |
| !! | ATCATCATGATATATAAAAT+TGG | + | chr8.4:55954385-55954404 | MS.gene74370:intron | 15.0% |
| !! | ATTAGAAATATAATTTACCT+CGG | - | chr8.4:55953686-55953705 | None:intergenic | 15.0% |
| !!! | AGATGAATATTTTAATTGAA+CGG | + | chr8.4:55954268-55954287 | MS.gene74370:intron | 15.0% |
| !!! | ATAACCGTTTTAATTTTTAT+TGG | + | chr8.4:55954659-55954678 | MS.gene74370:intron | 15.0% |
| !!! | ATAATTTAAAACTATTTGGT+TGG | - | chr8.4:55954457-55954476 | None:intergenic | 15.0% |
| !! | AACCAATCAACAATTAATAA+TGG | + | chr8.4:55954095-55954114 | MS.gene74370:intron | 20.0% |
| !! | ATTCAAGATCAATATCAATA+TGG | - | chr8.4:55954037-55954056 | None:intergenic | 20.0% |
| !! | CAATAACATATTGCAAAATT+TGG | + | chr8.4:55953904-55953923 | MS.gene74370:intron | 20.0% |
| !! | GATCTAAGTAAAAGATATAA+AGG | + | chr8.4:55953992-55954011 | MS.gene74370:intron | 20.0% |
| !! | TAAAAATATGACAGATCTAA+AGG | + | chr8.4:55953956-55953975 | MS.gene74370:intron | 20.0% |
| !! | TTCCATTATTAATTGTTGAT+TGG | - | chr8.4:55954100-55954119 | None:intergenic | 20.0% |
| !!! | GACATCTTTAAATTTCATTT+TGG | + | chr8.4:55953835-55953854 | MS.gene74370:intron | 20.0% |
| !!! | GCCATCTAATTTTAATTTAA+TGG | - | chr8.4:55954179-55954198 | None:intergenic | 20.0% |
| !!! | TATAAAATTGGTTGATTTGA+TGG | + | chr8.4:55954397-55954416 | MS.gene74370:intron | 20.0% |
| !!! | TTTAGATCTGTCATATTTTT+AGG | - | chr8.4:55953957-55953976 | None:intergenic | 20.0% |
| ! | ATTTCTAATAACACTAACAC+TGG | + | chr8.4:55953697-55953716 | MS.gene74370:intron | 25.0% |
| !!! | TTGTCTTCTGATTTTTAACT+TGG | + | chr8.4:55953762-55953781 | MS.gene74370:intron | 25.0% |
| AGAAATTGATGAGCACTATA+AGG | + | chr8.4:55954791-55954810 | MS.gene74370:CDS | 30.0% | |
| ATGTACAAGTACAACTACAA+AGG | + | chr8.4:55954297-55954316 | MS.gene74370:intron | 30.0% | |
| CATCATTGAAGTGATTGATA+AGG | + | chr8.4:55954824-55954843 | MS.gene74370:CDS | 30.0% | |
| GATATATATAGCAAGAGTGA+TGG | + | chr8.4:55954123-55954142 | MS.gene74370:intron | 30.0% | |
| ! | GTAAACTTAGCACTGAAATT+GGG | + | chr8.4:55953514-55953533 | MS.gene74370:CDS | 30.0% |
| ! | TTGATTTGATGGTTGGAATA+GGG | + | chr8.4:55954408-55954427 | MS.gene74370:intron | 30.0% |
| !! | AAACTATTTGGTTGGCTTTA+AGG | - | chr8.4:55954449-55954468 | None:intergenic | 30.0% |
| !! | AAATTGGTTGATTTGATGGT+TGG | + | chr8.4:55954401-55954420 | MS.gene74370:intron | 30.0% |
| !! | GCTTTAAGGATCTCTAATTT+AGG | - | chr8.4:55954435-55954454 | None:intergenic | 30.0% |
| !!! | ACTGGATTTATGTGCTATTT+TGG | + | chr8.4:55953715-55953734 | MS.gene74370:intron | 30.0% |
| AAAATCGTCCACAAGATCTT+CGG | + | chr8.4:55954765-55954784 | MS.gene74370:CDS | 35.0% | |
| ACTCTGATTCAGTTAAACAC+TGG | + | chr8.4:55953652-55953671 | MS.gene74370:CDS | 35.0% | |
| AGGTATTCCATCCAACTATT+TGG | - | chr8.4:55954915-55954934 | None:intergenic | 35.0% | |
| ATGTTGAACCTCCAAATAGT+TGG | + | chr8.4:55954901-55954920 | MS.gene74370:CDS | 35.0% | |
| TAGTTTGAAGAACTTGTCAG+AGG | - | chr8.4:55953550-55953569 | None:intergenic | 35.0% | |
| TATTCCATCCAACTATTTGG+AGG | - | chr8.4:55954912-55954931 | None:intergenic | 35.0% | |
| ! | GGTAAACTTAGCACTGAAAT+TGG | + | chr8.4:55953513-55953532 | MS.gene74370:CDS | 35.0% |
| ! | TGATTTGATGGTTGGAATAG+GGG | + | chr8.4:55954409-55954428 | MS.gene74370:intron | 35.0% |
| !! | ATAGCAAGAGTGATGGATTT+AGG | + | chr8.4:55954130-55954149 | MS.gene74370:intron | 35.0% |
| !! | GTTGATTTGATGGTTGGAAT+AGG | + | chr8.4:55954407-55954426 | MS.gene74370:intron | 35.0% |
| ACCTTCGATTTCACAACAGA+GGG | + | chr8.4:55954690-55954709 | MS.gene74370:intron | 40.0% | |
| ATGGCACTACTGCAGTTAAA+TGG | + | chr8.4:55954850-55954869 | MS.gene74370:CDS | 40.0% | |
| GAAGTGATTGATAAGGCTGA+TGG | + | chr8.4:55954831-55954850 | MS.gene74370:CDS | 40.0% | |
| TACCTTCGATTTCACAACAG+AGG | + | chr8.4:55954689-55954708 | MS.gene74370:intron | 40.0% | |
| TCATCTTGTCAAGCAAGCAA+AGG | + | chr8.4:55954962-55954981 | MS.gene74370:CDS | 40.0% | |
| TGAACCTCCAAATAGTTGGA+TGG | + | chr8.4:55954905-55954924 | MS.gene74370:CDS | 40.0% | |
| TTTCTTCACCGAAGATCTTG+TGG | - | chr8.4:55954776-55954795 | None:intergenic | 40.0% | |
| AGCTGCATCAAGGTGATGAA+TGG | + | chr8.4:55953625-55953644 | MS.gene74370:CDS | 45.0% | |
| CATGAAACCAAGCTGCATCA+AGG | + | chr8.4:55953615-55953634 | MS.gene74370:CDS | 45.0% | |
| TTCATCACCTTGATGCAGCT+TGG | - | chr8.4:55953625-55953644 | None:intergenic | 45.0% | |
| ! | TGTCTCGAGTGCATTTGCTA+AGG | - | chr8.4:55954935-55954954 | None:intergenic | 45.0% |
| !!! | AATAATAATTTAAAACTATT+TGG | - | chr8.4:55954461-55954480 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTAAGAAAAAATT+GGG | + | chr8.4:55954571-55954590 | MS.gene74370:intron | 5.0% |
| !!! | TTTTTTTTTTAAGAAAAAAT+TGG | + | chr8.4:55954570-55954589 | MS.gene74370:intron | 5.0% |
| AAACACTGGACTCATGTCCG+AGG | + | chr8.4:55953666-55953685 | MS.gene74370:CDS | 50.0% | |
| CGATTTCACAACAGAGGGCA+AGG | + | chr8.4:55954695-55954714 | MS.gene74370:intron | 50.0% | |
| GCCCTCTGTTGTGAAATCGA+AGG | - | chr8.4:55954694-55954713 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55953501 | 55954995 | 55953501 | ID=MS.gene74370 |
| chr8.4 | mRNA | 55953501 | 55954995 | 55953501 | ID=MS.gene74370.t1;Parent=MS.gene74370 |
| chr8.4 | exon | 55953501 | 55953687 | 55953501 | ID=MS.gene74370.t1.exon1;Parent=MS.gene74370.t1 |
| chr8.4 | CDS | 55953501 | 55953687 | 55953501 | ID=cds.MS.gene74370.t1;Parent=MS.gene74370.t1 |
| chr8.4 | exon | 55954709 | 55954995 | 55954709 | ID=MS.gene74370.t1.exon2;Parent=MS.gene74370.t1 |
| chr8.4 | CDS | 55954709 | 55954995 | 55954709 | ID=cds.MS.gene74370.t1;Parent=MS.gene74370.t1 |
| Gene Sequence |
| Protein sequence |
