Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98445.t1 | XP_003612700.1 | 97.3 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 2.20E-72 | 281.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98445.t1 | G7K9J9 | 97.3 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 1.6e-72 | 281.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene98445 | -0.8059 | 1.07E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene98445 | -0.802525 | 5.38E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene98445 | -0.813262 | 2.80E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene98445 | -0.806885 | 6.62E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene98445 | -0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene98445 | -0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene98445 | -0.816648 | 4.96E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene98445 | -0.817141 | 3.85E-52 | -1.69E-46 |
| MS.gene050787 | MS.gene98445 | -0.817813 | 2.71E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene98445 | -0.828485 | 8.76E-55 | -1.69E-46 |
| MS.gene050815 | MS.gene98445 | -0.803743 | 3.01E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene98445 | -0.80977 | 1.61E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene98445 | -0.833487 | 5.19E-56 | -1.69E-46 |
| MS.gene052323 | MS.gene98445 | -0.807844 | 4.14E-50 | -1.69E-46 |
| MS.gene052673 | MS.gene98445 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene98445 | -0.804394 | 2.21E-49 | -1.69E-46 |
| MS.gene053555 | MS.gene98445 | -0.804539 | 2.06E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene98445 | -0.816474 | 5.43E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene98445 | -0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene054433 | MS.gene98445 | -0.807464 | 4.99E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene98445 | -0.817499 | 3.20E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene98445 | -0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene98445 | -0.80908 | 2.26E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene98445 | -0.82888 | 7.03E-55 | -1.69E-46 |
| MS.gene055357 | MS.gene98445 | -0.825911 | 3.62E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene98445 | -0.841539 | 4.47E-58 | -1.69E-46 |
| MS.gene055507 | MS.gene98445 | -0.804647 | 1.95E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene98445 | -0.806156 | 9.43E-50 | -1.69E-46 |
| MS.gene055815 | MS.gene98445 | 0.814401 | 1.57E-51 | -1.69E-46 |
| MS.gene055816 | MS.gene98445 | 0.817869 | 2.64E-52 | -1.69E-46 |
| MS.gene056069 | MS.gene98445 | 0.800934 | 1.14E-48 | -1.69E-46 |
| MS.gene056173 | MS.gene98445 | -0.801443 | 8.98E-49 | -1.69E-46 |
| MS.gene056772 | MS.gene98445 | -0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene98445 | -0.833073 | 6.58E-56 | -1.69E-46 |
| MS.gene058168 | MS.gene98445 | -0.805086 | 1.58E-49 | -1.69E-46 |
| MS.gene059607 | MS.gene98445 | -0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene98445 | -0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene98445 | 0.860392 | 2.13E-63 | -1.69E-46 |
| MS.gene060634 | MS.gene98445 | 0.804279 | 2.33E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene98445 | -0.840807 | 6.96E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98445.t1 | MTR_5g027940 | 97.333 | 150 | 3 | 1 | 1 | 150 | 1 | 149 | 2.44e-102 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98445.t1 | AT1G31940 | 68.000 | 150 | 45 | 3 | 1 | 149 | 1 | 148 | 3.78e-61 | 186 |
| MS.gene98445.t1 | AT2G35585 | 59.091 | 154 | 57 | 3 | 1 | 150 | 1 | 152 | 4.99e-55 | 170 |
| MS.gene98445.t1 | AT2G35585 | 67.470 | 83 | 25 | 1 | 1 | 83 | 1 | 81 | 3.44e-32 | 111 |
Find 37 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCCACCTCTGAGTTTGC+AGG | 0.300221 | 5.4:-18674553 | None:intergenic |
| CTAAAACTTCTTGAAGAATC+AGG | 0.316902 | 5.4:+18676249 | MS.gene98445:CDS |
| CGTCTTACATTAAGAATAGA+TGG | 0.331681 | 5.4:-18674703 | None:intergenic |
| GAATAGATGGTTCTGGCAAC+GGG | 0.396306 | 5.4:-18674690 | None:intergenic |
| ATAATCAGGATGGAAGAATA+TGG | 0.406041 | 5.4:+18676067 | MS.gene98445:intron |
| TCTGGCAACGGGCACTGAAT+TGG | 0.410974 | 5.4:-18674679 | None:intergenic |
| ACATTAAGAATAGATGGTTC+TGG | 0.414371 | 5.4:-18674697 | None:intergenic |
| GGTTCAACGGGATGTTCAAC+TGG | 0.450563 | 5.4:-18674640 | None:intergenic |
| TCATTATCAAGGGGTTCAAC+GGG | 0.459693 | 5.4:-18674652 | None:intergenic |
| GCTGCTACTGCAACTTCTCA+TGG | 0.475047 | 5.4:+18674592 | MS.gene98445:CDS |
| GATCTTCGCGGCCGAGGAGC+AGG | 0.480306 | 5.4:-18676174 | None:intergenic |
| ATCATTATCAAGGGGTTCAA+CGG | 0.491883 | 5.4:-18674653 | None:intergenic |
| AGAATAGATGGTTCTGGCAA+CGG | 0.495108 | 5.4:-18674691 | None:intergenic |
| AGGCGATCTGCCAGTAATGA+AGG | 0.511434 | 5.4:+18676122 | MS.gene98445:CDS |
| GAATTGGTCGATCATTATCA+AGG | 0.530282 | 5.4:-18674663 | None:intergenic |
| GAGTGAGATCTTCGCGGCCG+AGG | 0.534691 | 5.4:-18676180 | None:intergenic |
| TCTGCTACCGTGCGTAGAAG+AGG | 0.536224 | 5.4:+18676102 | MS.gene98445:CDS |
| GGGCACTTTGTGTTCGTCGA+TGG | 0.540755 | 5.4:-18673630 | None:intergenic |
| TTCATATTGTGCAGGATGAG+AGG | 0.549681 | 5.4:+18674521 | MS.gene98445:intron |
| AGTCTGAAGGTCCTGCTCCT+CGG | 0.551322 | 5.4:+18676163 | MS.gene98445:CDS |
| AATTGGTCGATCATTATCAA+GGG | 0.561117 | 5.4:-18674662 | None:intergenic |
| ATCTGCCAGTAATGAAGGAA+GGG | 0.569466 | 5.4:+18676127 | MS.gene98445:CDS |
| CGATTAGAGTGAGATCTTCG+CGG | 0.570292 | 5.4:-18676186 | None:intergenic |
| GATCTGCCAGTAATGAAGGA+AGG | 0.572044 | 5.4:+18676126 | MS.gene98445:CDS |
| TCATATTGTGCAGGATGAGA+GGG | 0.588693 | 5.4:+18674522 | MS.gene98445:intron |
| TGTGCAGGATGAGAGGGAAG+TGG | 0.602862 | 5.4:+18674528 | MS.gene98445:intron |
| CAGGAGCACTAAGAGATGGT+AGG | 0.611171 | 5.4:-18676215 | None:intergenic |
| GGCGCCTGCAAACTCAGAGG+TGG | 0.611681 | 5.4:+18674549 | MS.gene98445:CDS |
| TGCTCAGGAGCACTAAGAGA+TGG | 0.615904 | 5.4:-18676219 | None:intergenic |
| AACTTCTCATGGAATTGAAG+TGG | 0.616117 | 5.4:+18674603 | MS.gene98445:CDS |
| TCGACGAACACAAAGTGCCC+TGG | 0.616207 | 5.4:+18673633 | MS.gene98445:CDS |
| TCTGCCAGTAATGAAGGAAG+GGG | 0.618044 | 5.4:+18676128 | MS.gene98445:CDS |
| GGAGGAGCACTTGAGTCTGA+AGG | 0.620083 | 5.4:+18676150 | MS.gene98445:CDS |
| ATTGGTCGATCATTATCAAG+GGG | 0.658159 | 5.4:-18674661 | None:intergenic |
| CAGATCGCCTCTTCTACGCA+CGG | 0.667684 | 5.4:-18676109 | None:intergenic |
| AGTGGCGCCTGCAAACTCAG+AGG | 0.694459 | 5.4:+18674546 | MS.gene98445:CDS |
| CTGCCAGTAATGAAGGAAGG+GGG | 0.698973 | 5.4:+18676129 | MS.gene98445:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTTTTTTTTTTATTGT+TGG | + | chr5.4:18673797-18673816 | MS.gene98445:intron | 10.0% |
| !! | AAAAAAAAAAACAAAGAACA+AGG | - | chr5.4:18673791-18673810 | None:intergenic | 15.0% |
| !! | AATAACAAAGGATAAAATAA+AGG | + | chr5.4:18674051-18674070 | MS.gene98445:intron | 15.0% |
| !! | AATTACTAACAACAATATTA+TGG | + | chr5.4:18675247-18675266 | MS.gene98445:intron | 15.0% |
| !! | AATTTAATGTGAAGTTTATA+TGG | + | chr5.4:18673956-18673975 | MS.gene98445:intron | 15.0% |
| !! | ATATACTATTTCAATAACAA+AGG | + | chr5.4:18674039-18674058 | MS.gene98445:intron | 15.0% |
| !! | ATTACTAACAACAATATTAT+GGG | + | chr5.4:18675248-18675267 | MS.gene98445:intron | 15.0% |
| !! | ACCACTAACATATAAAAAAA+AGG | - | chr5.4:18675359-18675378 | None:intergenic | 20.0% |
| !! | ATGGTAACAATCAATTAATA+TGG | - | chr5.4:18676014-18676033 | None:intergenic | 20.0% |
| !! | ATTGCAAATTAAGTATCATA+TGG | - | chr5.4:18674956-18674975 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAATAACAAAC+CGG | - | chr5.4:18675070-18675089 | None:intergenic | 20.0% |
| !! | TTGCAAATTAAGTATCATAT+GGG | - | chr5.4:18674955-18674974 | None:intergenic | 20.0% |
| !! | TTTATTGTTGGATCAAATTT+GGG | + | chr5.4:18673809-18673828 | MS.gene98445:intron | 20.0% |
| !!! | AAATCATTTTTTTTCTTACC+AGG | - | chr5.4:18673654-18673673 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAGTTTA+TGG | + | chr5.4:18674359-18674378 | MS.gene98445:intron | 20.0% |
| !!! | AATCATTTTTTTTCTTACCA+GGG | - | chr5.4:18673653-18673672 | None:intergenic | 20.0% |
| !!! | ATACTTCTTATATTTTCACA+TGG | - | chr5.4:18675109-18675128 | None:intergenic | 20.0% |
| !!! | ATTGTTGTTAATCAGTATAT+GGG | + | chr5.4:18674824-18674843 | MS.gene98445:intron | 20.0% |
| !!! | TATTGTTGTTAATCAGTATA+TGG | + | chr5.4:18674823-18674842 | MS.gene98445:intron | 20.0% |
| !!! | TTAATTGCTAATGATTCTTT+TGG | + | chr5.4:18675860-18675879 | MS.gene98445:intron | 20.0% |
| !!! | TTTAGAAATATAGCTCTATT+TGG | + | chr5.4:18673986-18674005 | MS.gene98445:intron | 20.0% |
| !!! | TTTGTAAAATGTTCTGTTTT+TGG | + | chr5.4:18673744-18673763 | MS.gene98445:intron | 20.0% |
| !!! | TTTTATTGTTGGATCAAATT+TGG | + | chr5.4:18673808-18673827 | MS.gene98445:intron | 20.0% |
| ! | AAAACAACTTATAGCTCATA+TGG | - | chr5.4:18674312-18674331 | None:intergenic | 25.0% |
| ! | AATCTTATTCGTCAATAATC+AGG | + | chr5.4:18676053-18676072 | MS.gene98445:intron | 25.0% |
| ! | ACAACAATAATACAGTTCTA+CGG | - | chr5.4:18674812-18674831 | None:intergenic | 25.0% |
| ! | ACTTTGCATATAAATAAGCA+TGG | + | chr5.4:18675930-18675949 | MS.gene98445:intron | 25.0% |
| ! | ATGTGAAGTTTATATGGAAT+CGG | + | chr5.4:18673962-18673981 | MS.gene98445:intron | 25.0% |
| ! | CAAGTATTTAATCCAGAATA+AGG | - | chr5.4:18675000-18675019 | None:intergenic | 25.0% |
| ! | CTTAATGTAAGACGAATATA+TGG | + | chr5.4:18674712-18674731 | MS.gene98445:intron | 25.0% |
| ! | CTTATGAAAGAAACTTATAG+CGG | - | chr5.4:18674093-18674112 | None:intergenic | 25.0% |
| ! | GAAACAGCTTAACTTTATTA+GGG | - | chr5.4:18674290-18674309 | None:intergenic | 25.0% |
| ! | TAAAATCCAATATTGGATAC+AGG | - | chr5.4:18674913-18674932 | None:intergenic | 25.0% |
| ! | TAAACATACCAATTTAAGCA+CGG | + | chr5.4:18675957-18675976 | MS.gene98445:intron | 25.0% |
| ! | TTGAAATGCACAATTCAATA+AGG | - | chr5.4:18675040-18675059 | None:intergenic | 25.0% |
| ! | TTTATGATCATCACAATATG+TGG | + | chr5.4:18673713-18673732 | MS.gene98445:intron | 25.0% |
| !! | AATATTGGATTTTATCTTGC+CGG | + | chr5.4:18674919-18674938 | MS.gene98445:intron | 25.0% |
| !! | TTTTGTTCTGCTTCTTAAAA+TGG | + | chr5.4:18675301-18675320 | MS.gene98445:intron | 25.0% |
| !!! | ATATGTTAGTGGTTTTTTGT+TGG | + | chr5.4:18675366-18675385 | MS.gene98445:intron | 25.0% |
| !!! | CCGGTTTGTTATTTTTTTTT+TGG | + | chr5.4:18675067-18675086 | MS.gene98445:intron | 25.0% |
| !!! | GCCTTTTTTTTATATGTTAG+TGG | + | chr5.4:18675355-18675374 | MS.gene98445:intron | 25.0% |
| !!! | TATGTTAGTGGTTTTTTGTT+GGG | + | chr5.4:18675367-18675386 | MS.gene98445:intron | 25.0% |
| !!! | TTTAGCTTTTGAAGATAGAA+GGG | - | chr5.4:18675682-18675701 | None:intergenic | 25.0% |
| AACAATATTATGGGATGTTG+TGG | + | chr5.4:18675257-18675276 | MS.gene98445:intron | 30.0% | |
| AAGTTAACATGTAGAGCTTA+CGG | + | chr5.4:18674335-18674354 | MS.gene98445:intron | 30.0% | |
| AATAAAACACGACTCTGTTA+TGG | + | chr5.4:18675510-18675529 | MS.gene98445:intron | 30.0% | |
| AATTGGTCGATCATTATCAA+GGG | - | chr5.4:18674665-18674684 | None:intergenic | 30.0% | |
| ACAATATTATGGGATGTTGT+GGG | + | chr5.4:18675258-18675277 | MS.gene98445:intron | 30.0% | |
| ACATTAAGAATAGATGGTTC+TGG | - | chr5.4:18674700-18674719 | None:intergenic | 30.0% | |
| ATAAGTTATCCTGTGGTTTA+TGG | + | chr5.4:18674108-18674127 | MS.gene98445:intron | 30.0% | |
| ATAATCAGGATGGAAGAATA+TGG | + | chr5.4:18676067-18676086 | MS.gene98445:intron | 30.0% | |
| ATCTTCAAAAGCTAAAGCAA+CGG | + | chr5.4:18675686-18675705 | MS.gene98445:intron | 30.0% | |
| CCTATGTTTATTTGTCTGTT+CGG | + | chr5.4:18674456-18674475 | MS.gene98445:intron | 30.0% | |
| CGTCTTACATTAAGAATAGA+TGG | - | chr5.4:18674706-18674725 | None:intergenic | 30.0% | |
| CTAAAACTTCTTGAAGAATC+AGG | + | chr5.4:18676249-18676268 | MS.gene98445:CDS | 30.0% | |
| GAAAAGCTTATTATTGCACT+TGG | + | chr5.4:18675897-18675916 | MS.gene98445:intron | 30.0% | |
| GCAATATTTGCATGCTATAA+TGG | + | chr5.4:18674971-18674990 | MS.gene98445:intron | 30.0% | |
| GGAAACAGCTTAACTTTATT+AGG | - | chr5.4:18674291-18674310 | None:intergenic | 30.0% | |
| GGCAAGATAAAATCCAATAT+TGG | - | chr5.4:18674920-18674939 | None:intergenic | 30.0% | |
| TAAGTTATCCTGTGGTTTAT+GGG | + | chr5.4:18674109-18674128 | MS.gene98445:intron | 30.0% | |
| TCTAACTTATCTGATTACCA+AGG | - | chr5.4:18675148-18675167 | None:intergenic | 30.0% | |
| TGTGAAGTTTATATGGAATC+GGG | + | chr5.4:18673963-18673982 | MS.gene98445:intron | 30.0% | |
| TTATTCGTCAATAATCAGGA+TGG | + | chr5.4:18676057-18676076 | MS.gene98445:intron | 30.0% | |
| TTCTTTCATAAGTTATCCTG+TGG | + | chr5.4:18674101-18674120 | MS.gene98445:intron | 30.0% | |
| TTGCATATAAATAAGCATGG+TGG | + | chr5.4:18675933-18675952 | MS.gene98445:intron | 30.0% | |
| ! | TTGTTTTCTAGATTCTCTGT+TGG | + | chr5.4:18673598-18673617 | MS.gene98445:CDS | 30.0% |
| !! | AAAGAAACTTATAGCGGATT+CGG | - | chr5.4:18674087-18674106 | None:intergenic | 30.0% |
| !! | GGCATATAAGTTGTTTTCAT+AGG | + | chr5.4:18674130-18674149 | MS.gene98445:intron | 30.0% |
| !! | TTATGTGGACGAGTTTTAAT+TGG | + | chr5.4:18674483-18674502 | MS.gene98445:intron | 30.0% |
| !! | TTCAATAAGGCTTCTTGTTT+TGG | - | chr5.4:18675027-18675046 | None:intergenic | 30.0% |
| !!! | AGTTTTAGAAGATTATGCTC+AGG | - | chr5.4:18676237-18676256 | None:intergenic | 30.0% |
| !!! | ATGTTAGTGGTTTTTTGTTG+GGG | + | chr5.4:18675368-18675387 | MS.gene98445:intron | 30.0% |
| !!! | CTTTAGCTTTTGAAGATAGA+AGG | - | chr5.4:18675683-18675702 | None:intergenic | 30.0% |
| !!! | TTGTTACCATTTAGCTTTTG+TGG | + | chr5.4:18676024-18676043 | MS.gene98445:intron | 30.0% |
| AACTTCTCATGGAATTGAAG+TGG | + | chr5.4:18674603-18674622 | MS.gene98445:CDS | 35.0% | |
| AATAATAGTAGATGCCTACC+TGG | + | chr5.4:18675739-18675758 | MS.gene98445:intron | 35.0% | |
| ACCAAATCACATCATCACAA+GGG | - | chr5.4:18673924-18673943 | None:intergenic | 35.0% | |
| AGTCAATGACTAACAAGTAG+TGG | - | chr5.4:18675645-18675664 | None:intergenic | 35.0% | |
| ATCATTATCAAGGGGTTCAA+CGG | - | chr5.4:18674656-18674675 | None:intergenic | 35.0% | |
| ATGGTTCACTGTGCTTAAAT+TGG | - | chr5.4:18675995-18676014 | None:intergenic | 35.0% | |
| ATTGGTCGATCATTATCAAG+GGG | - | chr5.4:18674664-18674683 | None:intergenic | 35.0% | |
| CCGAACAGACAAATAAACAT+AGG | - | chr5.4:18674459-18674478 | None:intergenic | 35.0% | |
| CTATAATGGTCACCTTATTC+TGG | + | chr5.4:18674985-18675004 | MS.gene98445:intron | 35.0% | |
| CTTTCACCTGTATCCAATAT+TGG | + | chr5.4:18674904-18674923 | MS.gene98445:intron | 35.0% | |
| GAATTGGTCGATCATTATCA+AGG | - | chr5.4:18674666-18674685 | None:intergenic | 35.0% | |
| GCAAAAATACTAATCCAGGT+AGG | - | chr5.4:18675756-18675775 | None:intergenic | 35.0% | |
| GGAAGACAAGACAAAAGTAA+TGG | - | chr5.4:18675780-18675799 | None:intergenic | 35.0% | |
| GTCTATCCTTTGATACAAGT+AGG | + | chr5.4:18675534-18675553 | MS.gene98445:intron | 35.0% | |
| TCAGAACCACAAAAGCTAAA+TGG | - | chr5.4:18676033-18676052 | None:intergenic | 35.0% | |
| TCATATGGGTTTGAAAACAC+CGG | - | chr5.4:18674941-18674960 | None:intergenic | 35.0% | |
| TCTTCAAAAGCTAAAGCAAC+GGG | + | chr5.4:18675687-18675706 | MS.gene98445:intron | 35.0% | |
| TGGAGCAAAAATACTAATCC+AGG | - | chr5.4:18675760-18675779 | None:intergenic | 35.0% | |
| TTTAACCACCGTGCTTAAAT+TGG | - | chr5.4:18675968-18675987 | None:intergenic | 35.0% | |
| TTTGATACAAGTAGGTAGCT+CGG | + | chr5.4:18675542-18675561 | MS.gene98445:intron | 35.0% | |
| ! | AGTGGTTATCTCAGTTTTCA+GGG | - | chr5.4:18675627-18675646 | None:intergenic | 35.0% |
| ! | ATTGCTCTAAGTAGTCTTGA+TGG | - | chr5.4:18675199-18675218 | None:intergenic | 35.0% |
| ! | CAGGGTTTAAAATTAAACCC+TGG | - | chr5.4:18675609-18675628 | None:intergenic | 35.0% |
| ! | TAGTGGTTATCTCAGTTTTC+AGG | - | chr5.4:18675628-18675647 | None:intergenic | 35.0% |
| !! | ATAAGTTAGAGTGTCGAGAA+GGG | + | chr5.4:18675158-18675177 | MS.gene98445:intron | 35.0% |
| AAAAGCTAAAGCAACGGGTA+GGG | + | chr5.4:18675692-18675711 | MS.gene98445:intron | 40.0% | |
| ACATACCAATTTAAGCACGG+TGG | + | chr5.4:18675960-18675979 | MS.gene98445:intron | 40.0% | |
| ATCTGCCAGTAATGAAGGAA+GGG | + | chr5.4:18676127-18676146 | MS.gene98445:CDS | 40.0% | |
| CACCAAATCACATCATCACA+AGG | - | chr5.4:18673925-18673944 | None:intergenic | 40.0% | |
| CCTTCTGCTTAAAACTCCTT+TGG | - | chr5.4:18675585-18675604 | None:intergenic | 40.0% | |
| CTTATATGCCCATAAACCAC+AGG | - | chr5.4:18674120-18674139 | None:intergenic | 40.0% | |
| GAGCTACCTACTTGTATCAA+AGG | - | chr5.4:18675543-18675562 | None:intergenic | 40.0% | |
| GTAGCTCGGTTAGTGATTAA+GGG | + | chr5.4:18675556-18675575 | MS.gene98445:intron | 40.0% | |
| TAGTGATTAAGGGACACCAA+AGG | + | chr5.4:18675566-18675585 | MS.gene98445:intron | 40.0% | |
| TCATATTGTGCAGGATGAGA+GGG | + | chr5.4:18674522-18674541 | MS.gene98445:intron | 40.0% | |
| TCATTATCAAGGGGTTCAAC+GGG | - | chr5.4:18674655-18674674 | None:intergenic | 40.0% | |
| TGTGCATTTCAAAAGCTTGC+CGG | + | chr5.4:18675048-18675067 | MS.gene98445:intron | 40.0% | |
| TTCATATTGTGCAGGATGAG+AGG | + | chr5.4:18674521-18674540 | MS.gene98445:intron | 40.0% | |
| ! | AAAGCACTTGTACCCTATCT+GGG | - | chr5.4:18674405-18674424 | None:intergenic | 40.0% |
| ! | AGCTTTTCCAAACAGTCTCA+CGG | + | chr5.4:18674220-18674239 | MS.gene98445:intron | 40.0% |
| ! | ATAGTCTGTTTCTCCCAGAT+AGG | + | chr5.4:18674389-18674408 | MS.gene98445:intron | 40.0% |
| ! | GACAAAAAGTGTGTCAAGTC+TGG | + | chr5.4:18674848-18674867 | MS.gene98445:intron | 40.0% |
| ! | TAGTCTGTTTCTCCCAGATA+GGG | + | chr5.4:18674390-18674409 | MS.gene98445:intron | 40.0% |
| ! | TCAAGTCTGGTTGTGTTGTT+GGG | + | chr5.4:18674861-18674880 | MS.gene98445:intron | 40.0% |
| ! | TCCCTTGTGATGATGTGATT+TGG | + | chr5.4:18673920-18673939 | MS.gene98445:intron | 40.0% |
| ! | TGATATGCTGTTTAGTGCCT+TGG | + | chr5.4:18675128-18675147 | MS.gene98445:intron | 40.0% |
| !! | AAAAGCACTTGTACCCTATC+TGG | - | chr5.4:18674406-18674425 | None:intergenic | 40.0% |
| !! | AGAATAGATGGTTCTGGCAA+CGG | - | chr5.4:18674694-18674713 | None:intergenic | 40.0% |
| !! | GATAAGTTAGAGTGTCGAGA+AGG | + | chr5.4:18675157-18675176 | MS.gene98445:intron | 40.0% |
| !! | GATGTGATTTGGTGTTGGAT+TGG | + | chr5.4:18673931-18673950 | MS.gene98445:intron | 40.0% |
| !! | GTGATGATGTGATTTGGTGT+TGG | + | chr5.4:18673926-18673945 | MS.gene98445:intron | 40.0% |
| !! | GTGTTGACTTCATATTGTGC+AGG | + | chr5.4:18674513-18674532 | MS.gene98445:intron | 40.0% |
| !!! | AGTTTTAAGCAGAAGGTCCA+GGG | + | chr5.4:18675589-18675608 | MS.gene98445:intron | 40.0% |
| !!! | CCAAAGGAGTTTTAAGCAGA+AGG | + | chr5.4:18675582-18675601 | MS.gene98445:intron | 40.0% |
| !!! | TAGTGGTTTTTTGTTGGGGA+GGG | + | chr5.4:18675372-18675391 | MS.gene98445:intron | 40.0% |
| !!! | TTAGTGGTTTTTTGTTGGGG+AGG | + | chr5.4:18675371-18675390 | MS.gene98445:intron | 40.0% |
| AGGCTATCTTGCAGAGCTTA+TGG | + | chr5.4:18674150-18674169 | MS.gene98445:intron | 45.0% | |
| AGGGGGAAATTGTTAGCAAG+AGG | + | chr5.4:18675391-18675410 | MS.gene98445:intron | 45.0% | |
| CAAAAGCTAAAGCAACGGGT+AGG | + | chr5.4:18675691-18675710 | MS.gene98445:intron | 45.0% | |
| CGATTAGAGTGAGATCTTCG+CGG | - | chr5.4:18676189-18676208 | None:intergenic | 45.0% | |
| CTTGTCTTCCCTACTTCTGT+TGG | + | chr5.4:18675790-18675809 | MS.gene98445:intron | 45.0% | |
| GATCTGCCAGTAATGAAGGA+AGG | + | chr5.4:18676126-18676145 | MS.gene98445:CDS | 45.0% | |
| GGGGGAAATTGTTAGCAAGA+GGG | + | chr5.4:18675392-18675411 | MS.gene98445:intron | 45.0% | |
| GGTAGCTCGGTTAGTGATTA+AGG | + | chr5.4:18675555-18675574 | MS.gene98445:intron | 45.0% | |
| GGTATCAAGAAGGAGGTCAA+AGG | - | chr5.4:18675424-18675443 | None:intergenic | 45.0% | |
| GTCAAGTCTGGTTGTGTTGT+TGG | + | chr5.4:18674860-18674879 | MS.gene98445:intron | 45.0% | |
| TAAACACCCGTGAGACTGTT+TGG | - | chr5.4:18674230-18674249 | None:intergenic | 45.0% | |
| TCTGCCAGTAATGAAGGAAG+GGG | + | chr5.4:18676128-18676147 | MS.gene98445:CDS | 45.0% | |
| TGACTGTGCCAACAGAAGTA+GGG | - | chr5.4:18675801-18675820 | None:intergenic | 45.0% | |
| TGTCTGTTCGGCAAGTTATG+TGG | + | chr5.4:18674468-18674487 | MS.gene98445:intron | 45.0% | |
| ! | GCTTTTCCAAACAGTCTCAC+GGG | + | chr5.4:18674221-18674240 | MS.gene98445:intron | 45.0% |
| !! | GAATAGATGGTTCTGGCAAC+GGG | - | chr5.4:18674693-18674712 | None:intergenic | 45.0% |
| !!! | AGTGGTTTTTTGTTGGGGAG+GGG | + | chr5.4:18675373-18675392 | MS.gene98445:intron | 45.0% |
| !!! | GAGTTTTAAGCAGAAGGTCC+AGG | + | chr5.4:18675588-18675607 | MS.gene98445:intron | 45.0% |
| AGGCGATCTGCCAGTAATGA+AGG | + | chr5.4:18676122-18676141 | MS.gene98445:CDS | 50.0% | |
| CCTGAGGGCTACATCTTTGA+GGG | + | chr5.4:18675454-18675473 | MS.gene98445:intron | 50.0% | |
| CTGCCAGTAATGAAGGAAGG+GGG | + | chr5.4:18676129-18676148 | MS.gene98445:CDS | 50.0% | |
| GCTGCTACTGCAACTTCTCA+TGG | + | chr5.4:18674592-18674611 | MS.gene98445:CDS | 50.0% | |
| GGTTCAACGGGATGTTCAAC+TGG | - | chr5.4:18674643-18674662 | None:intergenic | 50.0% | |
| GTGACTGTGCCAACAGAAGT+AGG | - | chr5.4:18675802-18675821 | None:intergenic | 50.0% | |
| TCCTGAGGGCTACATCTTTG+AGG | + | chr5.4:18675453-18675472 | MS.gene98445:intron | 50.0% | |
| !! | ACGCTGAAGGGGTATCAAGA+AGG | - | chr5.4:18675434-18675453 | None:intergenic | 50.0% |
| !! | CAGGAGCACTAAGAGATGGT+AGG | - | chr5.4:18676218-18676237 | None:intergenic | 50.0% |
| !! | CTGAAGGGGTATCAAGAAGG+AGG | - | chr5.4:18675431-18675450 | None:intergenic | 50.0% |
| !! | TGCTCAGGAGCACTAAGAGA+TGG | - | chr5.4:18676222-18676241 | None:intergenic | 50.0% |
| !!! | GTGGTTTTTTGTTGGGGAGG+GGG | + | chr5.4:18675374-18675393 | MS.gene98445:intron | 50.0% |
| AGTCTGAAGGTCCTGCTCCT+CGG | + | chr5.4:18676163-18676182 | MS.gene98445:CDS | 55.0% | |
| ATACCCCTTCAGCGTCCTGA+GGG | + | chr5.4:18675439-18675458 | MS.gene98445:intron | 55.0% | |
| CAGATCGCCTCTTCTACGCA+CGG | - | chr5.4:18676112-18676131 | None:intergenic | 55.0% | |
| CCAGTAATGAAGGAAGGGGG+AGG | + | chr5.4:18676132-18676151 | MS.gene98445:CDS | 55.0% | |
| CCCTCAAAGATGTAGCCCTC+AGG | - | chr5.4:18675457-18675476 | None:intergenic | 55.0% | |
| CCTCCCCCTTCCTTCATTAC+TGG | - | chr5.4:18676135-18676154 | None:intergenic | 55.0% | |
| GCTAAAGCAACGGGTAGGGT+TGG | + | chr5.4:18675696-18675715 | MS.gene98445:intron | 55.0% | |
| GGGCACTTTGTGTTCGTCGA+TGG | - | chr5.4:18673633-18673652 | None:intergenic | 55.0% | |
| TCTGCTACCGTGCGTAGAAG+AGG | + | chr5.4:18676102-18676121 | MS.gene98445:CDS | 55.0% | |
| TGTGCAGGATGAGAGGGAAG+TGG | + | chr5.4:18674528-18674547 | MS.gene98445:intron | 55.0% | |
| ! | TCGACGAACACAAAGTGCCC+TGG | + | chr5.4:18673633-18673652 | MS.gene98445:CDS | 55.0% |
| !! | GGAGGAGCACTTGAGTCTGA+AGG | + | chr5.4:18676150-18676169 | MS.gene98445:CDS | 55.0% |
| !! | TCTGGCAACGGGCACTGAAT+TGG | - | chr5.4:18674682-18674701 | None:intergenic | 55.0% |
| AGTGGCGCCTGCAAACTCAG+AGG | + | chr5.4:18674546-18674565 | MS.gene98445:CDS | 60.0% | |
| GATACCCCTTCAGCGTCCTG+AGG | + | chr5.4:18675438-18675457 | MS.gene98445:intron | 60.0% | |
| GCAACGGGTAGGGTTGGAAG+TGG | + | chr5.4:18675702-18675721 | MS.gene98445:intron | 60.0% | |
| GCTGCCACCTCTGAGTTTGC+AGG | - | chr5.4:18674556-18674575 | None:intergenic | 60.0% | |
| GTAGCCCTCAGGACGCTGAA+GGG | - | chr5.4:18675446-18675465 | None:intergenic | 60.0% | |
| TAGCCCTCAGGACGCTGAAG+GGG | - | chr5.4:18675445-18675464 | None:intergenic | 60.0% | |
| TGTAGCCCTCAGGACGCTGA+AGG | - | chr5.4:18675447-18675466 | None:intergenic | 60.0% | |
| GAGTGAGATCTTCGCGGCCG+AGG | - | chr5.4:18676183-18676202 | None:intergenic | 65.0% | |
| GGCGCCTGCAAACTCAGAGG+TGG | + | chr5.4:18674549-18674568 | MS.gene98445:CDS | 65.0% | |
| GATCTTCGCGGCCGAGGAGC+AGG | - | chr5.4:18676177-18676196 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 18673589 | 18676278 | 18673589 | ID=MS.gene98445 |
| chr5.4 | mRNA | 18673589 | 18676278 | 18673589 | ID=MS.gene98445.t1;Parent=MS.gene98445 |
| chr5.4 | exon | 18673589 | 18673654 | 18673589 | ID=MS.gene98445.t1.exon1;Parent=MS.gene98445.t1 |
| chr5.4 | CDS | 18673589 | 18673654 | 18673589 | ID=cds.MS.gene98445.t1;Parent=MS.gene98445.t1 |
| chr5.4 | exon | 18674535 | 18674717 | 18674535 | ID=MS.gene98445.t1.exon2;Parent=MS.gene98445.t1 |
| chr5.4 | CDS | 18674535 | 18674717 | 18674535 | ID=cds.MS.gene98445.t1;Parent=MS.gene98445.t1 |
| chr5.4 | exon | 18676075 | 18676278 | 18676075 | ID=MS.gene98445.t1.exon3;Parent=MS.gene98445.t1 |
| chr5.4 | CDS | 18676075 | 18676278 | 18676075 | ID=cds.MS.gene98445.t1;Parent=MS.gene98445.t1 |
| Gene Sequence |
| Protein sequence |
