Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38528.t1 | XP_013460371.2 | 86.7 | 452 | 48 | 2 | 1 | 452 | 1 | 440 | 7.00E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38528.t1 | Q8GYW8 | 37.9 | 475 | 268 | 12 | 1 | 467 | 1 | 456 | 6.5e-71 | 269.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38528.t1 | A0A072UX90 | 86.9 | 451 | 47 | 2 | 1 | 451 | 1 | 439 | 6.6e-218 | 766.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene38528 | 0.807387 | 5.18E-50 | -1.69E-46 |
| MS.gene049382 | MS.gene38528 | 0.806813 | 6.85E-50 | -1.69E-46 |
| MS.gene049695 | MS.gene38528 | 0.813761 | 2.17E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene38528 | 0.810365 | 1.20E-50 | -1.69E-46 |
| MS.gene049915 | MS.gene38528 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene38528 | 0.801504 | 8.73E-49 | -1.69E-46 |
| MS.gene050139 | MS.gene38528 | 0.813262 | 2.80E-51 | -1.69E-46 |
| MS.gene05020 | MS.gene38528 | 0.802194 | 6.30E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene38528 | 0.811468 | 6.90E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene38528 | 0.800066 | 1.72E-48 | -1.69E-46 |
| MS.gene050398 | MS.gene38528 | 0.800091 | 1.70E-48 | -1.69E-46 |
| MS.gene050438 | MS.gene38528 | 0.824243 | 8.97E-54 | -1.69E-46 |
| MS.gene050516 | MS.gene38528 | 0.805636 | 1.21E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene38528 | 0.800674 | 1.29E-48 | -1.69E-46 |
| MS.gene050584 | MS.gene38528 | 0.818205 | 2.21E-52 | -1.69E-46 |
| MS.gene050586 | MS.gene38528 | 0.862566 | 4.63E-64 | -1.69E-46 |
| MS.gene050762 | MS.gene38528 | 0.801663 | 8.10E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene38528 | 0.804193 | 2.43E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene38528 | 0.808752 | 2.65E-50 | -1.69E-46 |
| MS.gene051487 | MS.gene38528 | 0.826603 | 2.48E-54 | -1.69E-46 |
| MS.gene051626 | MS.gene38528 | 0.840366 | 9.08E-58 | -1.69E-46 |
| MS.gene051789 | MS.gene38528 | 0.864341 | 1.30E-64 | -1.69E-46 |
| MS.gene051860 | MS.gene38528 | 0.811425 | 7.05E-51 | -1.69E-46 |
| MS.gene052142 | MS.gene38528 | 0.80677 | 7.00E-50 | -1.69E-46 |
| MS.gene052187 | MS.gene38528 | 0.808497 | 3.01E-50 | -1.69E-46 |
| MS.gene052207 | MS.gene38528 | 0.804221 | 2.40E-49 | -1.69E-46 |
| MS.gene052255 | MS.gene38528 | 0.81752 | 3.16E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene38528 | 0.811919 | 5.50E-51 | -1.69E-46 |
| MS.gene052967 | MS.gene38528 | 0.835524 | 1.60E-56 | -1.69E-46 |
| MS.gene053074 | MS.gene38528 | 0.904888 | 7.66E-80 | -1.69E-46 |
| MS.gene053184 | MS.gene38528 | 0.819604 | 1.06E-52 | -1.69E-46 |
| MS.gene053204 | MS.gene38528 | 0.820222 | 7.69E-53 | -1.69E-46 |
| MS.gene053630 | MS.gene38528 | 0.81224 | 4.68E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene38528 | 0.812685 | 3.74E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene38528 | 0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene38528 | 0.822321 | 2.52E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene38528 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene38528 | 0.813916 | 2.01E-51 | -1.69E-46 |
| MS.gene054184 | MS.gene38528 | 0.88835 | 6.38E-73 | -1.69E-46 |
| MS.gene054185 | MS.gene38528 | 0.89503 | 1.41E-75 | -1.69E-46 |
| MS.gene054473 | MS.gene38528 | 0.802566 | 5.28E-49 | -1.69E-46 |
| MS.gene05456 | MS.gene38528 | 0.833846 | 4.22E-56 | -1.69E-46 |
| MS.gene054596 | MS.gene38528 | 0.85146 | 8.75E-61 | -1.69E-46 |
| MS.gene055085 | MS.gene38528 | 0.820728 | 5.88E-53 | -1.69E-46 |
| MS.gene055133 | MS.gene38528 | 0.836539 | 8.82E-57 | -1.69E-46 |
| MS.gene055207 | MS.gene38528 | 0.804542 | 2.05E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene38528 | 0.834405 | 3.06E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene38528 | 0.833047 | 6.68E-56 | -1.69E-46 |
| MS.gene057393 | MS.gene38528 | 0.815171 | 1.06E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene38528 | 0.824405 | 8.22E-54 | -1.69E-46 |
| MS.gene057750 | MS.gene38528 | 0.831642 | 1.49E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene38528 | 0.860945 | 1.45E-63 | -1.69E-46 |
| MS.gene057809 | MS.gene38528 | 0.819274 | 1.27E-52 | -1.69E-46 |
| MS.gene057886 | MS.gene38528 | 0.80148 | 8.83E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene38528 | 0.803585 | 3.25E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene38528 | 0.88385 | 3.16E-71 | -1.69E-46 |
| MS.gene058484 | MS.gene38528 | 0.816087 | 6.62E-52 | -1.69E-46 |
| MS.gene058982 | MS.gene38528 | 0.812039 | 5.18E-51 | -1.69E-46 |
| MS.gene059006 | MS.gene38528 | 0.856728 | 2.64E-62 | -1.69E-46 |
| MS.gene059124 | MS.gene38528 | 0.912769 | 1.33E-83 | -1.69E-46 |
| MS.gene059128 | MS.gene38528 | 0.81467 | 1.37E-51 | -1.69E-46 |
| MS.gene059421 | MS.gene38528 | 0.845816 | 3.21E-59 | -1.69E-46 |
| MS.gene059713 | MS.gene38528 | 0.803469 | 3.43E-49 | -1.69E-46 |
| MS.gene060320 | MS.gene38528 | 0.84982 | 2.53E-60 | -1.69E-46 |
| MS.gene06037 | MS.gene38528 | 0.827592 | 1.44E-54 | -1.69E-46 |
| MS.gene060404 | MS.gene38528 | 0.821959 | 3.06E-53 | -1.69E-46 |
| MS.gene060476 | MS.gene38528 | 0.834998 | 2.17E-56 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38528.t1 | MTR_3g465950 | 86.918 | 451 | 47 | 2 | 1 | 451 | 1 | 439 | 0.0 | 787 |
| MS.gene38528.t1 | MTR_3g465930 | 78.981 | 471 | 95 | 3 | 1 | 470 | 1 | 468 | 0.0 | 766 |
| MS.gene38528.t1 | MTR_3g465910 | 79.698 | 463 | 89 | 3 | 1 | 463 | 1 | 458 | 0.0 | 757 |
| MS.gene38528.t1 | MTR_3g465870 | 81.064 | 470 | 48 | 3 | 1 | 470 | 1 | 429 | 0.0 | 751 |
| MS.gene38528.t1 | MTR_3g465880 | 70.464 | 474 | 127 | 7 | 1 | 467 | 1 | 468 | 0.0 | 671 |
| MS.gene38528.t1 | MTR_3g465980 | 69.593 | 467 | 134 | 4 | 1 | 466 | 1 | 460 | 0.0 | 657 |
| MS.gene38528.t1 | MTR_3g465990 | 68.094 | 467 | 141 | 4 | 1 | 466 | 1 | 460 | 0.0 | 650 |
| MS.gene38528.t1 | MTR_6g053810 | 58.478 | 460 | 181 | 6 | 9 | 463 | 8 | 462 | 0.0 | 521 |
| MS.gene38528.t1 | MTR_4g055170 | 48.837 | 473 | 215 | 12 | 3 | 466 | 4 | 458 | 1.48e-141 | 414 |
| MS.gene38528.t1 | MTR_2g015430 | 30.635 | 457 | 287 | 17 | 12 | 461 | 2 | 435 | 1.93e-54 | 188 |
| MS.gene38528.t1 | MTR_1g040175 | 31.429 | 350 | 216 | 12 | 8 | 350 | 5 | 337 | 1.12e-37 | 143 |
| MS.gene38528.t1 | MTR_7g027175 | 30.563 | 373 | 226 | 13 | 8 | 370 | 13 | 362 | 8.20e-35 | 135 |
| MS.gene38528.t1 | MTR_1g053315 | 28.898 | 481 | 279 | 23 | 7 | 460 | 13 | 457 | 1.56e-34 | 135 |
| MS.gene38528.t1 | MTR_7g110610 | 30.088 | 339 | 173 | 10 | 19 | 351 | 12 | 292 | 4.47e-34 | 132 |
| MS.gene38528.t1 | MTR_3g071320 | 28.117 | 409 | 258 | 14 | 12 | 403 | 5 | 394 | 1.80e-32 | 128 |
| MS.gene38528.t1 | MTR_8g096530 | 29.178 | 377 | 223 | 14 | 10 | 370 | 5 | 353 | 1.90e-32 | 129 |
| MS.gene38528.t1 | MTR_1g081660 | 27.152 | 453 | 293 | 13 | 21 | 463 | 22 | 447 | 4.22e-32 | 127 |
| MS.gene38528.t1 | MTR_1g040215 | 28.446 | 341 | 216 | 10 | 19 | 350 | 16 | 337 | 6.87e-32 | 127 |
| MS.gene38528.t1 | MTR_7g114550 | 28.402 | 338 | 221 | 8 | 19 | 350 | 17 | 339 | 4.19e-30 | 122 |
| MS.gene38528.t1 | MTR_5g076700 | 27.350 | 351 | 237 | 7 | 6 | 351 | 4 | 341 | 1.20e-28 | 118 |
| MS.gene38528.t1 | MTR_7g114520 | 28.857 | 350 | 232 | 8 | 6 | 350 | 5 | 342 | 2.82e-28 | 117 |
| MS.gene38528.t1 | MTR_3g098980 | 28.108 | 370 | 235 | 13 | 10 | 370 | 12 | 359 | 4.96e-27 | 113 |
| MS.gene38528.t1 | MTR_7g114560 | 27.066 | 351 | 235 | 9 | 6 | 350 | 4 | 339 | 5.46e-27 | 113 |
| MS.gene38528.t1 | MTR_1g040320 | 30.058 | 346 | 190 | 12 | 8 | 350 | 5 | 301 | 2.89e-25 | 107 |
| MS.gene38528.t1 | MTR_7g114490 | 26.486 | 370 | 253 | 8 | 6 | 371 | 4 | 358 | 2.99e-25 | 108 |
| MS.gene38528.t1 | MTR_8g075610 | 26.685 | 356 | 241 | 10 | 19 | 371 | 1 | 339 | 5.60e-25 | 107 |
| MS.gene38528.t1 | MTR_1g040315 | 28.939 | 311 | 191 | 10 | 19 | 321 | 16 | 304 | 3.09e-24 | 104 |
| MS.gene38528.t1 | MTR_7g114470 | 26.629 | 353 | 236 | 11 | 6 | 350 | 5 | 342 | 4.19e-24 | 105 |
| MS.gene38528.t1 | MTR_2g105330 | 25.886 | 367 | 237 | 12 | 12 | 367 | 3 | 345 | 8.86e-24 | 103 |
| MS.gene38528.t1 | MTR_2g064495 | 25.886 | 367 | 237 | 12 | 12 | 367 | 3 | 345 | 2.16e-23 | 102 |
| MS.gene38528.t1 | MTR_4g007540 | 26.203 | 374 | 228 | 13 | 12 | 367 | 3 | 346 | 4.14e-23 | 101 |
| MS.gene38528.t1 | MTR_3g112180 | 24.697 | 413 | 253 | 12 | 15 | 406 | 15 | 390 | 6.93e-23 | 101 |
| MS.gene38528.t1 | MTR_3g026950 | 24.390 | 410 | 256 | 18 | 20 | 409 | 10 | 385 | 8.66e-22 | 98.2 |
| MS.gene38528.t1 | MTR_4g127650 | 28.045 | 353 | 219 | 12 | 11 | 348 | 9 | 341 | 7.75e-21 | 95.1 |
| MS.gene38528.t1 | MTR_4g097090 | 27.042 | 355 | 217 | 11 | 14 | 349 | 11 | 342 | 3.63e-20 | 93.2 |
| MS.gene38528.t1 | MTR_1g040195 | 25.310 | 403 | 263 | 12 | 70 | 463 | 41 | 414 | 8.57e-20 | 92.0 |
| MS.gene38528.t1 | MTR_3g049150 | 25.543 | 368 | 234 | 16 | 14 | 364 | 4 | 348 | 1.63e-19 | 91.3 |
| MS.gene38528.t1 | MTR_7g086000 | 26.027 | 365 | 232 | 12 | 20 | 361 | 12 | 361 | 3.04e-19 | 90.5 |
| MS.gene38528.t1 | MTR_7g085930 | 26.913 | 379 | 229 | 20 | 19 | 371 | 13 | 369 | 4.11e-18 | 87.0 |
| MS.gene38528.t1 | MTR_4g013050 | 24.302 | 358 | 219 | 10 | 20 | 374 | 12 | 320 | 4.30e-17 | 83.6 |
| MS.gene38528.t1 | MTR_7g085990 | 26.667 | 375 | 235 | 17 | 19 | 371 | 9 | 365 | 6.40e-17 | 83.2 |
| MS.gene38528.t1 | MTR_0502s0010 | 28.502 | 207 | 128 | 7 | 152 | 350 | 44 | 238 | 9.09e-16 | 77.0 |
| MS.gene38528.t1 | MTR_7g084940 | 25.490 | 408 | 257 | 17 | 5 | 397 | 9 | 384 | 2.35e-15 | 78.6 |
| MS.gene38528.t1 | MTR_7g056087 | 23.485 | 396 | 249 | 15 | 11 | 376 | 3 | 374 | 7.02e-15 | 77.0 |
| MS.gene38528.t1 | MTR_0042s0190 | 29.282 | 181 | 116 | 7 | 174 | 350 | 1 | 173 | 6.06e-14 | 72.8 |
| MS.gene38528.t1 | MTR_7g114510 | 24.516 | 310 | 216 | 8 | 156 | 463 | 8 | 301 | 1.45e-13 | 72.0 |
| MS.gene38528.t1 | MTR_3g101960 | 25.979 | 281 | 175 | 9 | 71 | 336 | 69 | 331 | 4.98e-12 | 68.2 |
| MS.gene38528.t1 | MTR_3g101930 | 24.188 | 277 | 185 | 7 | 71 | 334 | 71 | 335 | 9.16e-12 | 67.4 |
| MS.gene38528.t1 | MTR_3g102020 | 25.899 | 278 | 179 | 10 | 71 | 336 | 70 | 332 | 2.27e-11 | 66.2 |
| MS.gene38528.t1 | MTR_3g102010 | 24.823 | 282 | 183 | 10 | 70 | 336 | 65 | 332 | 4.23e-11 | 65.1 |
| MS.gene38528.t1 | MTR_4g022720 | 25.455 | 275 | 186 | 7 | 70 | 336 | 55 | 318 | 5.60e-11 | 64.7 |
| MS.gene38528.t1 | MTR_3g101900 | 24.013 | 304 | 194 | 9 | 43 | 336 | 53 | 329 | 8.79e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38528.t1 | AT5G07080 | 37.924 | 472 | 248 | 14 | 6 | 463 | 8 | 448 | 1.34e-87 | 275 |
| MS.gene38528.t1 | AT2G25150 | 38.365 | 477 | 263 | 13 | 1 | 467 | 1 | 456 | 2.60e-85 | 270 |
| MS.gene38528.t1 | AT2G23510 | 37.969 | 453 | 251 | 13 | 19 | 463 | 20 | 450 | 4.85e-82 | 261 |
| MS.gene38528.t1 | AT3G47170 | 35.881 | 471 | 266 | 12 | 12 | 463 | 12 | 465 | 1.69e-77 | 249 |
| MS.gene38528.t1 | AT1G28680 | 33.551 | 459 | 275 | 14 | 12 | 461 | 4 | 441 | 1.16e-68 | 226 |
| MS.gene38528.t1 | AT1G28680 | 35.657 | 373 | 215 | 12 | 12 | 375 | 4 | 360 | 3.59e-60 | 202 |
| MS.gene38528.t1 | AT5G41040 | 29.032 | 372 | 236 | 12 | 8 | 370 | 13 | 365 | 8.59e-37 | 140 |
| MS.gene38528.t1 | AT5G41040 | 29.032 | 372 | 236 | 12 | 8 | 370 | 29 | 381 | 9.21e-37 | 141 |
| MS.gene38528.t1 | AT3G62160 | 30.499 | 341 | 204 | 10 | 18 | 351 | 11 | 325 | 1.11e-36 | 140 |
| MS.gene38528.t1 | AT5G17540 | 28.267 | 375 | 246 | 10 | 8 | 375 | 5 | 363 | 1.97e-31 | 126 |
| MS.gene38528.t1 | AT3G03480 | 26.623 | 462 | 305 | 12 | 8 | 463 | 15 | 448 | 8.74e-31 | 124 |
| MS.gene38528.t1 | AT2G40230 | 28.426 | 394 | 254 | 12 | 12 | 397 | 5 | 378 | 1.81e-28 | 117 |
| MS.gene38528.t1 | AT3G48720 | 27.624 | 362 | 238 | 13 | 15 | 370 | 12 | 355 | 5.79e-28 | 115 |
| MS.gene38528.t1 | AT5G48930 | 27.174 | 368 | 244 | 13 | 10 | 371 | 1 | 350 | 3.30e-27 | 113 |
| MS.gene38528.t1 | AT1G03390 | 26.291 | 426 | 253 | 16 | 8 | 409 | 13 | 401 | 1.27e-25 | 109 |
| MS.gene38528.t1 | AT5G63560 | 27.419 | 372 | 236 | 14 | 8 | 370 | 5 | 351 | 1.80e-25 | 108 |
| MS.gene38528.t1 | AT1G27620 | 25.373 | 402 | 247 | 12 | 13 | 397 | 10 | 375 | 5.19e-22 | 98.6 |
| MS.gene38528.t1 | AT2G19070 | 26.898 | 461 | 286 | 18 | 20 | 457 | 12 | 444 | 5.49e-22 | 98.6 |
| MS.gene38528.t1 | AT1G24430 | 27.900 | 319 | 192 | 15 | 8 | 320 | 1 | 287 | 4.43e-20 | 92.8 |
| MS.gene38528.t1 | AT1G65450 | 26.893 | 383 | 241 | 15 | 2 | 364 | 4 | 367 | 6.27e-18 | 86.3 |
| MS.gene38528.t1 | AT5G47980 | 24.682 | 393 | 251 | 17 | 8 | 391 | 1 | 357 | 6.17e-12 | 67.8 |
| MS.gene38528.t1 | AT4G15390 | 22.946 | 353 | 231 | 14 | 8 | 350 | 4 | 325 | 5.14e-11 | 65.1 |
| MS.gene38528.t1 | AT4G15390 | 22.946 | 353 | 231 | 14 | 8 | 350 | 4 | 325 | 5.14e-11 | 65.1 |
| MS.gene38528.t1 | AT1G32910 | 24.308 | 325 | 198 | 10 | 67 | 370 | 62 | 359 | 5.19e-11 | 65.1 |
Find 88 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTACCTAAAGGGTATTA+TGG | 0.159161 | 3.4:-61546453 | MS.gene38528:CDS |
| TCATTTCTAGCTTTAGGTTT+AGG | 0.176003 | 3.4:+61548414 | None:intergenic |
| AGGACGAAATTGAAGCTTTA+AGG | 0.184665 | 3.4:-61546017 | MS.gene38528:CDS |
| CATTTCTAGCTTTAGGTTTA+GGG | 0.192317 | 3.4:+61548415 | None:intergenic |
| ACAATACATGATTCTGATTC+AGG | 0.214559 | 3.4:-61548269 | MS.gene38528:CDS |
| TTGCTCTGAAGATTTGTAAT+TGG | 0.242943 | 3.4:+61546850 | None:intergenic |
| CCTTTCTTCTCTTCATTACT+TGG | 0.251953 | 3.4:-61547027 | MS.gene38528:CDS |
| TCATGATCATCAAGTTTATT+AGG | 0.262038 | 3.4:+61546105 | None:intergenic |
| CATCTTTCATTTCTAGCTTT+AGG | 0.271621 | 3.4:+61548408 | None:intergenic |
| GATTATTATTATCCTCTTGC+AGG | 0.285447 | 3.4:-61548200 | MS.gene38528:intron |
| AAGTTACCCTTTGGTATTCA+TGG | 0.294628 | 3.4:-61546943 | MS.gene38528:CDS |
| CTTTGTGGCGGTTTCACAAT+TGG | 0.320034 | 3.4:-61546909 | MS.gene38528:CDS |
| GAATTCCCATAATACCCTTT+AGG | 0.340816 | 3.4:+61546447 | None:intergenic |
| CTTTACCTAAAGGGTATTAT+GGG | 0.352647 | 3.4:-61546452 | MS.gene38528:CDS |
| CATGCTATTTGTGACGCATT+TGG | 0.353743 | 3.4:-61546873 | MS.gene38528:CDS |
| GGCGGTTTCACAATTGGAAT+GGG | 0.359194 | 3.4:-61546903 | MS.gene38528:CDS |
| GGTGTTGGTTGTGCAGAATA+TGG | 0.362293 | 3.4:-61547083 | MS.gene38528:CDS |
| TCTAAGTGAGTTGAGACATT+TGG | 0.363120 | 3.4:-61546229 | MS.gene38528:CDS |
| CTAAGTGAGTTGAGACATTT+GGG | 0.370865 | 3.4:-61546228 | MS.gene38528:CDS |
| TTCAGAGCAATTGTTGAACT+TGG | 0.384460 | 3.4:-61546837 | MS.gene38528:CDS |
| AACTTAGGCATAGCAGCAAC+AGG | 0.385326 | 3.4:+61546042 | None:intergenic |
| GTTTCTTCACTCGAAGTTGT+AGG | 0.391217 | 3.4:-61545995 | None:intergenic |
| AGAAGCGGTCTCAAAGGCTT+TGG | 0.391560 | 3.4:-61548222 | MS.gene38528:CDS |
| ATTATGATACTTTACCTAAA+GGG | 0.409088 | 3.4:-61546461 | MS.gene38528:CDS |
| TGCTGCTATGCCTAAGTTCA+AGG | 0.415385 | 3.4:-61546037 | MS.gene38528:CDS |
| GCTTGATATTCCTTCTCCTA+TGG | 0.424499 | 3.4:-61546970 | MS.gene38528:CDS |
| TATGGATAAAAGTTACCCTT+TGG | 0.431832 | 3.4:-61546952 | MS.gene38528:CDS |
| TGTCAATGGAAGGAGGAGTT+AGG | 0.442569 | 3.4:-61546080 | MS.gene38528:CDS |
| TTAGCATATGCTTCTAAGAA+TGG | 0.443157 | 3.4:+61547056 | None:intergenic |
| CACAAACTCAATAAACTCCT+TGG | 0.443557 | 3.4:-61546310 | MS.gene38528:CDS |
| GTGAAAATGCAACAGATTCT+CGG | 0.449271 | 3.4:+61546718 | None:intergenic |
| GGAAGACTTAGAGTCGAGTT+TGG | 0.454551 | 3.4:-61547104 | MS.gene38528:CDS |
| TCAATTTCGTCCTTGAACTT+AGG | 0.461185 | 3.4:+61546027 | None:intergenic |
| TGGCGGTTTCACAATTGGAA+TGG | 0.467227 | 3.4:-61546904 | MS.gene38528:CDS |
| TCCCACACAGGTTTCACTGA+TGG | 0.471401 | 3.4:+61546798 | None:intergenic |
| TGCAACAGATTCTCGGTCAG+TGG | 0.476338 | 3.4:+61546725 | None:intergenic |
| CCAAGCATCTTGCATGGTGC+AGG | 0.480198 | 3.4:+61546156 | None:intergenic |
| AAGTTGCGTCTAATACCAAC+TGG | 0.480983 | 3.4:+61546489 | None:intergenic |
| GATTATGATACTTTACCTAA+AGG | 0.489847 | 3.4:-61546462 | MS.gene38528:CDS |
| CCAAGTAATGAAGAGAAGAA+AGG | 0.491172 | 3.4:+61547027 | None:intergenic |
| TGGTATTAGACGCAACTTGA+AGG | 0.491366 | 3.4:-61546484 | MS.gene38528:CDS |
| TTGGAAACGAATCAAGAAGA+TGG | 0.495121 | 3.4:-61546291 | MS.gene38528:CDS |
| CTCGGTCAGTGGGACATTGT+GGG | 0.504074 | 3.4:+61546736 | None:intergenic |
| AGCATGGAATTGGAAGATAG+TGG | 0.504909 | 3.4:-61546264 | MS.gene38528:CDS |
| GCAATTGTTGAACTTGGAAG+AGG | 0.508018 | 3.4:-61546831 | MS.gene38528:CDS |
| CAAGTAATGAAGAGAAGAAA+GGG | 0.508480 | 3.4:+61547028 | None:intergenic |
| ATCTTCTTGATTCGTTTCCA+AGG | 0.517741 | 3.4:+61546293 | None:intergenic |
| CTTAGAGTCGAGTTTGGTGT+TGG | 0.525295 | 3.4:-61547098 | MS.gene38528:CDS |
| TCTCGGTCAGTGGGACATTG+TGG | 0.526038 | 3.4:+61546735 | None:intergenic |
| CCTGCACCATGCAAGATGCT+TGG | 0.531684 | 3.4:-61546156 | MS.gene38528:CDS |
| AGCTTAACAATTTCATAGAG+TGG | 0.539783 | 3.4:+61546375 | None:intergenic |
| GGAAGATAGTGGTGCACTAA+CGG | 0.541116 | 3.4:-61546253 | MS.gene38528:CDS |
| ATTTCTAGCTTTAGGTTTAG+GGG | 0.543168 | 3.4:+61548416 | None:intergenic |
| ATGGTGACAAAATTTCTTTG+TGG | 0.543302 | 3.4:-61546924 | MS.gene38528:CDS |
| CACAGAAATTGCAAAAGACT+TGG | 0.546007 | 3.4:-61546994 | MS.gene38528:CDS |
| GACAGAGAAAGAATACAAGA+AGG | 0.550104 | 3.4:+61548356 | None:intergenic |
| TTGTCACCATGAATACCAAA+GGG | 0.551952 | 3.4:+61546937 | None:intergenic |
| GCGGTTTCACAATTGGAATG+GGG | 0.553602 | 3.4:-61546902 | MS.gene38528:CDS |
| TGATGATCATGATCTGTCAA+TGG | 0.555180 | 3.4:-61546094 | MS.gene38528:CDS |
| GCCTTAAAACTTAACAGCAA+TGG | 0.564131 | 3.4:-61546531 | MS.gene38528:CDS |
| TTTGTCACCATGAATACCAA+AGG | 0.565547 | 3.4:+61546936 | None:intergenic |
| TCAGTGGGACATTGTGGGAA+AGG | 0.570113 | 3.4:+61546741 | None:intergenic |
| TTTACAAGTATACCTGCAAG+AGG | 0.571753 | 3.4:+61548188 | None:intergenic |
| AAGTGCTTGCAGGTTATGTG+TGG | 0.575180 | 3.4:-61546569 | MS.gene38528:CDS |
| AATCATGTATTGTTGATGAC+CGG | 0.576588 | 3.4:+61548279 | None:intergenic |
| CTAGTGAAACATGCTGGTGA+TGG | 0.577908 | 3.4:-61547125 | MS.gene38528:CDS |
| CAAGAAGGAATAGACTTGGA+TGG | 0.586286 | 3.4:+61548371 | None:intergenic |
| GCGTCTAATACCAACTGGAA+TGG | 0.590884 | 3.4:+61546494 | None:intergenic |
| GCAACAGATTCTCGGTCAGT+GGG | 0.591813 | 3.4:+61546726 | None:intergenic |
| ATTCAAAGAAGCGGTCTCAA+AGG | 0.594281 | 3.4:-61548228 | MS.gene38528:CDS |
| AATACAAGAAGGAATAGACT+TGG | 0.595657 | 3.4:+61548367 | None:intergenic |
| GTGACAAAATTTCTTTGTGG+CGG | 0.608273 | 3.4:-61546921 | MS.gene38528:CDS |
| CGGTTTCACAATTGGAATGG+GGG | 0.610007 | 3.4:-61546901 | MS.gene38528:CDS |
| ATGAGAAAATACATGTATCG+AGG | 0.611145 | 3.4:+61546130 | None:intergenic |
| GGTAGACTAGTGAAACATGC+TGG | 0.615068 | 3.4:-61547131 | MS.gene38528:CDS |
| TTGTCATGTATTCAAAGAAG+CGG | 0.616564 | 3.4:-61548237 | MS.gene38528:CDS |
| GTTTGTGACATAATCAGCAG+TGG | 0.618396 | 3.4:+61546326 | None:intergenic |
| TGAGAAAATACATGTATCGA+GGG | 0.628400 | 3.4:+61546131 | None:intergenic |
| TGCTTGCAGGTTATGTGTGG+AGG | 0.634525 | 3.4:-61546566 | MS.gene38528:CDS |
| GCTTCTTTGAATACATGACA+AGG | 0.645628 | 3.4:+61548239 | None:intergenic |
| GATCATGATCTGTCAATGGA+AGG | 0.648767 | 3.4:-61546090 | MS.gene38528:CDS |
| AGGGTGCCAAGCATCTTGCA+TGG | 0.649943 | 3.4:+61546150 | None:intergenic |
| CATGATCTGTCAATGGAAGG+AGG | 0.651977 | 3.4:-61546087 | MS.gene38528:CDS |
| ACAGTGTTGACCATTCCAGT+TGG | 0.658221 | 3.4:-61546504 | MS.gene38528:CDS |
| ACTTAGGCATAGCAGCAACA+GGG | 0.673752 | 3.4:+61546043 | None:intergenic |
| CTTCTTTGAATACATGACAA+GGG | 0.683868 | 3.4:+61548240 | None:intergenic |
| AGCCATCAGTGAAACCTGTG+TGG | 0.685980 | 3.4:-61546800 | MS.gene38528:CDS |
| GCCATCAGTGAAACCTGTGT+GGG | 0.717270 | 3.4:-61546799 | MS.gene38528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATAAAAATGAAAAAAT+AGG | - | chr3.4:61547824-61547843 | MS.gene38528:intron | 10.0% |
| !! | TGAATAAAAATGAAAAAATA+GGG | - | chr3.4:61547825-61547844 | MS.gene38528:intron | 10.0% |
| !! | AATAAATATCATGGTTAATT+CGG | + | chr3.4:61546432-61546451 | None:intergenic | 15.0% |
| !! | AATTGATAAAGGAAAAAAAT+TGG | - | chr3.4:61546606-61546625 | MS.gene38528:CDS | 15.0% |
| !! | CAATTCAAATGTTAAAATAA+AGG | + | chr3.4:61547083-61547102 | None:intergenic | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr3.4:61547044-61547063 | MS.gene38528:CDS | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr3.4:61547063-61547044 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr3.4:61547043-61547062 | MS.gene38528:CDS | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr3.4:61547062-61547043 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTGTTACATTGT+TGG | + | chr3.4:61546464-61546483 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+GGG | + | chr3.4:61546725-61546744 | None:intergenic | 15.0% |
| !! | ATTATGATACTTTACCTAAA+GGG | - | chr3.4:61547969-61547988 | MS.gene38528:intron | 20.0% |
| !! | GTTACACTTTAAATTGATAA+AGG | - | chr3.4:61546595-61546614 | MS.gene38528:CDS | 20.0% |
| !! | TATAATGATTAGCAAAAACA+CGG | - | chr3.4:61546275-61546294 | MS.gene38528:CDS | 20.0% |
| !! | TGTCATTGAAATAAATATCA+TGG | + | chr3.4:61546441-61546460 | None:intergenic | 20.0% |
| !! | TTATTTGTATTGAAAGTTGA+TGG | - | chr3.4:61547127-61547146 | MS.gene38528:CDS | 20.0% |
| !!! | ACGTTTTAAAAGTTTCAAAT+TGG | - | chr3.4:61546756-61546775 | MS.gene38528:CDS | 20.0% |
| !!! | AGTATTATTTTGATTCACAA+AGG | + | chr3.4:61547738-61547757 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | - | chr3.4:61546727-61546746 | MS.gene38528:CDS | 20.0% |
| !!! | CAATATTGTTTTAAAGTAGA+GGG | - | chr3.4:61547770-61547789 | MS.gene38528:intron | 20.0% |
| !!! | CAGGAAAATATAATTTTTGA+AGG | - | chr3.4:61548229-61548248 | MS.gene38528:CDS | 20.0% |
| !!! | CTTGAAACTTTTAAAACATA+AGG | + | chr3.4:61546726-61546745 | None:intergenic | 20.0% |
| !!! | GTATTATTTTGATTCACAAA+GGG | + | chr3.4:61547737-61547756 | None:intergenic | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr3.4:61546698-61546717 | MS.gene38528:CDS | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr3.4:61546717-61546698 | None:intergenic | 20.0% |
| !!! | GTTTGTTACACTTTTATTTT+AGG | - | chr3.4:61546650-61546669 | MS.gene38528:CDS | 20.0% |
| !!! | TTGAAACTTTTAAAACGTAA+GGG | + | chr3.4:61546754-61546773 | None:intergenic | 20.0% |
| !!! | TTTGAAACTTTTAAAACGTA+AGG | + | chr3.4:61546755-61546774 | None:intergenic | 20.0% |
| ! | ATTACAGAAAACGTTGTTTA+AGG | - | chr3.4:61546523-61546542 | MS.gene38528:CDS | 25.0% |
| ! | CAACGTATGAAAATTATGAA+AGG | - | chr3.4:61546336-61546355 | MS.gene38528:CDS | 25.0% |
| ! | GATTATGATACTTTACCTAA+AGG | - | chr3.4:61547968-61547987 | MS.gene38528:intron | 25.0% |
| ! | GGATCTTTAAATTTAAGTGA+CGG | - | chr3.4:61546918-61546937 | MS.gene38528:CDS | 25.0% |
| ! | GTCACTTAAATTTAAAGATC+CGG | + | chr3.4:61546919-61546938 | None:intergenic | 25.0% |
| ! | TCACTTAAATTTAAAGATCC+GGG | + | chr3.4:61546918-61546937 | None:intergenic | 25.0% |
| ! | TCATGATCATCAAGTTTATT+AGG | + | chr3.4:61548328-61548347 | None:intergenic | 25.0% |
| ! | TCTGTAATAAAGATTGTTGT+TGG | + | chr3.4:61546511-61546530 | None:intergenic | 25.0% |
| ! | TTACAGAAAACGTTGTTTAA+GGG | - | chr3.4:61546524-61546543 | MS.gene38528:CDS | 25.0% |
| ! | TTGAAACTTGTAAAACGTAA+GGG | - | chr3.4:61546984-61547003 | MS.gene38528:CDS | 25.0% |
| !!! | AATAACTGCTTTCAGTTTTT+TGG | + | chr3.4:61547179-61547198 | None:intergenic | 25.0% |
| !!! | ATAACTGCTTTCAGTTTTTT+GGG | + | chr3.4:61547178-61547197 | None:intergenic | 25.0% |
| !!! | ATGTTTTAAAAGTTCCAAGT+TGG | + | chr3.4:61547011-61547030 | None:intergenic | 25.0% |
| !!! | GCAATATTGTTTTAAAGTAG+AGG | - | chr3.4:61547769-61547788 | MS.gene38528:intron | 25.0% |
| !!! | TTGGAACTTTTAAAACATGA+AGG | - | chr3.4:61547013-61547032 | MS.gene38528:CDS | 25.0% |
| AATACAAGAAGGAATAGACT+TGG | + | chr3.4:61546066-61546085 | None:intergenic | 30.0% | |
| ACAATACATGATTCTGATTC+AGG | - | chr3.4:61546161-61546180 | MS.gene38528:CDS | 30.0% | |
| AGCTTAACAATTTCATAGAG+TGG | + | chr3.4:61548058-61548077 | None:intergenic | 30.0% | |
| ATGAGAAAATACATGTATCG+AGG | + | chr3.4:61548303-61548322 | None:intergenic | 30.0% | |
| ATGGTGACAAAATTTCTTTG+TGG | - | chr3.4:61547506-61547525 | MS.gene38528:intron | 30.0% | |
| CAAGTAATGAAGAGAAGAAA+GGG | + | chr3.4:61547405-61547424 | None:intergenic | 30.0% | |
| CTTCTTTGAATACATGACAA+GGG | + | chr3.4:61546193-61546212 | None:intergenic | 30.0% | |
| CTTGAAACTTGTAAAACGTA+AGG | - | chr3.4:61546983-61547002 | MS.gene38528:CDS | 30.0% | |
| GATTATTATTATCCTCTTGC+AGG | - | chr3.4:61546230-61546249 | MS.gene38528:CDS | 30.0% | |
| TATGGATAAAAGTTACCCTT+TGG | - | chr3.4:61547478-61547497 | MS.gene38528:intron | 30.0% | |
| TGAGAAAATACATGTATCGA+GGG | + | chr3.4:61548302-61548321 | None:intergenic | 30.0% | |
| TTAAACTCAATATCATGTCG+CGG | + | chr3.4:61546820-61546839 | None:intergenic | 30.0% | |
| TTGTCATGTATTCAAAGAAG+CGG | - | chr3.4:61546193-61546212 | MS.gene38528:CDS | 30.0% | |
| ! | AAAGGGTAACTTTTATCCAT+AGG | + | chr3.4:61547479-61547498 | None:intergenic | 30.0% |
| ! | TAACTTTTATCCATAGGAGA+AGG | + | chr3.4:61547473-61547492 | None:intergenic | 30.0% |
| ! | TTAGCATATGCTTCTAAGAA+TGG | + | chr3.4:61547377-61547396 | None:intergenic | 30.0% |
| !! | AATCATGTATTGTTGATGAC+CGG | + | chr3.4:61546154-61546173 | None:intergenic | 30.0% |
| !! | ACCATTGCTGTTAAGTTTTA+AGG | + | chr3.4:61547903-61547922 | None:intergenic | 30.0% |
| !! | ACGTTTTACAAGTTTCAAGT+TGG | + | chr3.4:61546982-61547001 | None:intergenic | 30.0% |
| !! | ACTTTACCTAAAGGGTATTA+TGG | - | chr3.4:61547977-61547996 | MS.gene38528:intron | 30.0% |
| !! | ATTTCTAGCTTTAGGTTTAG+GGG | + | chr3.4:61546017-61546036 | None:intergenic | 30.0% |
| !! | CATCTTTCATTTCTAGCTTT+AGG | + | chr3.4:61546025-61546044 | None:intergenic | 30.0% |
| !! | CATTTCTAGCTTTAGGTTTA+GGG | + | chr3.4:61546018-61546037 | None:intergenic | 30.0% |
| !! | CTTTACCTAAAGGGTATTAT+GGG | - | chr3.4:61547978-61547997 | MS.gene38528:intron | 30.0% |
| !! | GTCATTTTGTTCATGTATAC+CGG | - | chr3.4:61546132-61546151 | MS.gene38528:CDS | 30.0% |
| !! | TCATTTCTAGCTTTAGGTTT+AGG | + | chr3.4:61546019-61546038 | None:intergenic | 30.0% |
| !! | TTGCTCTGAAGATTTGTAAT+TGG | + | chr3.4:61547583-61547602 | None:intergenic | 30.0% |
| AAGTTACCCTTTGGTATTCA+TGG | - | chr3.4:61547487-61547506 | MS.gene38528:intron | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | + | chr3.4:61546312-61546331 | None:intergenic | 35.0% | |
| AGGACGAAATTGAAGCTTTA+AGG | - | chr3.4:61548413-61548432 | MS.gene38528:CDS | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | + | chr3.4:61546313-61546332 | None:intergenic | 35.0% | |
| CACAAACTCAATAAACTCCT+TGG | - | chr3.4:61548120-61548139 | MS.gene38528:intron | 35.0% | |
| CACAGAAATTGCAAAAGACT+TGG | - | chr3.4:61547436-61547455 | MS.gene38528:intron | 35.0% | |
| CCAAGTAATGAAGAGAAGAA+AGG | + | chr3.4:61547406-61547425 | None:intergenic | 35.0% | |
| CCTTTCTTCTCTTCATTACT+TGG | - | chr3.4:61547403-61547422 | MS.gene38528:intron | 35.0% | |
| GAATTCCCATAATACCCTTT+AGG | + | chr3.4:61547986-61548005 | None:intergenic | 35.0% | |
| GACAGAGAAAGAATACAAGA+AGG | + | chr3.4:61546077-61546096 | None:intergenic | 35.0% | |
| GCCTTAAAACTTAACAGCAA+TGG | - | chr3.4:61547899-61547918 | MS.gene38528:intron | 35.0% | |
| GCTTCTTTGAATACATGACA+AGG | + | chr3.4:61546194-61546213 | None:intergenic | 35.0% | |
| GTGAAAATGCAACAGATTCT+CGG | + | chr3.4:61547715-61547734 | None:intergenic | 35.0% | |
| GTGACAAAATTTCTTTGTGG+CGG | - | chr3.4:61547509-61547528 | MS.gene38528:intron | 35.0% | |
| TCAATTTCGTCCTTGAACTT+AGG | + | chr3.4:61548406-61548425 | None:intergenic | 35.0% | |
| TGATGATCATGATCTGTCAA+TGG | - | chr3.4:61548336-61548355 | MS.gene38528:CDS | 35.0% | |
| TGGGAAAGAGAAAAACAAGT+TGG | - | chr3.4:61547650-61547669 | MS.gene38528:intron | 35.0% | |
| TTCAGAGCAATTGTTGAACT+TGG | - | chr3.4:61547593-61547612 | MS.gene38528:intron | 35.0% | |
| TTCTAACATGAGTAGCGTTT+AGG | - | chr3.4:61546955-61546974 | MS.gene38528:CDS | 35.0% | |
| TTGGAAACGAATCAAGAAGA+TGG | - | chr3.4:61548139-61548158 | MS.gene38528:intron | 35.0% | |
| TTGTCACCATGAATACCAAA+GGG | + | chr3.4:61547496-61547515 | None:intergenic | 35.0% | |
| TTTACAAGTATACCTGCAAG+AGG | + | chr3.4:61546245-61546264 | None:intergenic | 35.0% | |
| TTTGTCACCATGAATACCAA+AGG | + | chr3.4:61547497-61547516 | None:intergenic | 35.0% | |
| ! | ATCTTCTTGATTCGTTTCCA+AGG | + | chr3.4:61548140-61548159 | None:intergenic | 35.0% |
| ! | CTAAGTGAGTTGAGACATTT+GGG | - | chr3.4:61548202-61548221 | MS.gene38528:CDS | 35.0% |
| ! | TCTAAGTGAGTTGAGACATT+TGG | - | chr3.4:61548201-61548220 | MS.gene38528:CDS | 35.0% |
| !!! | AGATGGTTTTAGCATGGAAT+TGG | - | chr3.4:61548156-61548175 | MS.gene38528:intron | 35.0% |
| !!! | TCAAGAAGATGGTTTTAGCA+TGG | - | chr3.4:61548150-61548169 | MS.gene38528:intron | 35.0% |
| AAGTTGCGTCTAATACCAAC+TGG | + | chr3.4:61547944-61547963 | None:intergenic | 40.0% | |
| AGCATGGAATTGGAAGATAG+TGG | - | chr3.4:61548166-61548185 | MS.gene38528:intron | 40.0% | |
| ATTCAAAGAAGCGGTCTCAA+AGG | - | chr3.4:61546202-61546221 | MS.gene38528:CDS | 40.0% | |
| CAAGAAGGAATAGACTTGGA+TGG | + | chr3.4:61546062-61546081 | None:intergenic | 40.0% | |
| CGTTGTCGCAATAAAAAGAG+CGG | + | chr3.4:61546321-61546340 | None:intergenic | 40.0% | |
| GATCATGATCTGTCAATGGA+AGG | - | chr3.4:61548340-61548359 | MS.gene38528:CDS | 40.0% | |
| GCAATTGTTGAACTTGGAAG+AGG | - | chr3.4:61547599-61547618 | MS.gene38528:intron | 40.0% | |
| GCTTGATATTCCTTCTCCTA+TGG | - | chr3.4:61547460-61547479 | MS.gene38528:intron | 40.0% | |
| GTTTGTGACATAATCAGCAG+TGG | + | chr3.4:61548107-61548126 | None:intergenic | 40.0% | |
| TAAAACGTAAGGGACCAACT+TGG | - | chr3.4:61546994-61547013 | MS.gene38528:CDS | 40.0% | |
| TGGTATTAGACGCAACTTGA+AGG | - | chr3.4:61547946-61547965 | MS.gene38528:intron | 40.0% | |
| ! | AAAGATCCGGGTTGACAATA+TGG | + | chr3.4:61546906-61546925 | None:intergenic | 40.0% |
| ! | AAGATCCGGGTTGACAATAT+GGG | + | chr3.4:61546905-61546924 | None:intergenic | 40.0% |
| ! | CATGCTATTTGTGACGCATT+TGG | - | chr3.4:61547557-61547576 | MS.gene38528:intron | 40.0% |
| ! | CATGTTTCACTAGTCTACCT+GGG | + | chr3.4:61547298-61547317 | None:intergenic | 40.0% |
| ! | TGTTTTTCTCTTTCCCACAC+AGG | + | chr3.4:61547647-61547666 | None:intergenic | 40.0% |
| ! | TTCCAACGTGAGTAACGTTT+TGG | + | chr3.4:61546783-61546802 | None:intergenic | 40.0% |
| !! | GAAGTGAGATGTTGGTTTAG+TGG | + | chr3.4:61547271-61547290 | None:intergenic | 40.0% |
| !! | GTTGAGACATTTGGGTTTTC+AGG | - | chr3.4:61548210-61548229 | MS.gene38528:CDS | 40.0% |
| !!! | ACAACTTTTGAAGTGCTTGC+AGG | - | chr3.4:61547851-61547870 | MS.gene38528:intron | 40.0% |
| !!! | CTGCTTTCAGTTTTTTGGGT+TGG | + | chr3.4:61547174-61547193 | None:intergenic | 40.0% |
| AACATCTCACTTCGTTTCCC+AGG | - | chr3.4:61547278-61547297 | MS.gene38528:intron | 45.0% | |
| AACTTAGGCATAGCAGCAAC+AGG | + | chr3.4:61548391-61548410 | None:intergenic | 45.0% | |
| AAGTGCTTGCAGGTTATGTG+TGG | - | chr3.4:61547861-61547880 | MS.gene38528:intron | 45.0% | |
| ACTCAATATCATGTCGCGGA+AGG | + | chr3.4:61546816-61546835 | None:intergenic | 45.0% | |
| ACTTAGGCATAGCAGCAACA+GGG | + | chr3.4:61548390-61548409 | None:intergenic | 45.0% | |
| CATCACCCATATTGTCAACC+CGG | - | chr3.4:61546897-61546916 | MS.gene38528:CDS | 45.0% | |
| CATGATCTGTCAATGGAAGG+AGG | - | chr3.4:61548343-61548362 | MS.gene38528:CDS | 45.0% | |
| CGGTTTCACAATTGGAATGG+GGG | - | chr3.4:61547529-61547548 | MS.gene38528:intron | 45.0% | |
| CTAGTGAAACATGCTGGTGA+TGG | - | chr3.4:61547305-61547324 | MS.gene38528:intron | 45.0% | |
| CTCAATATCATGTCGCGGAA+GGG | + | chr3.4:61546815-61546834 | None:intergenic | 45.0% | |
| CTTTGTGGCGGTTTCACAAT+TGG | - | chr3.4:61547521-61547540 | MS.gene38528:intron | 45.0% | |
| GCGGTTTCACAATTGGAATG+GGG | - | chr3.4:61547528-61547547 | MS.gene38528:intron | 45.0% | |
| GCGTCTAATACCAACTGGAA+TGG | + | chr3.4:61547939-61547958 | None:intergenic | 45.0% | |
| GGAAGACTTAGAGTCGAGTT+TGG | - | chr3.4:61547326-61547345 | MS.gene38528:intron | 45.0% | |
| GGCGGTTTCACAATTGGAAT+GGG | - | chr3.4:61547527-61547546 | MS.gene38528:intron | 45.0% | |
| GGTAGACTAGTGAAACATGC+TGG | - | chr3.4:61547299-61547318 | MS.gene38528:intron | 45.0% | |
| GTCCAAAACGTTACTCACGT+TGG | - | chr3.4:61546778-61546797 | MS.gene38528:CDS | 45.0% | |
| TGCTGCTATGCCTAAGTTCA+AGG | - | chr3.4:61548393-61548412 | MS.gene38528:CDS | 45.0% | |
| TGGCGGTTTCACAATTGGAA+TGG | - | chr3.4:61547526-61547545 | MS.gene38528:intron | 45.0% | |
| TGGGAAACGAAGTGAGATGT+TGG | + | chr3.4:61547279-61547298 | None:intergenic | 45.0% | |
| TGTCAATGGAAGGAGGAGTT+AGG | - | chr3.4:61548350-61548369 | MS.gene38528:CDS | 45.0% | |
| ! | GCATGTTTCACTAGTCTACC+TGG | + | chr3.4:61547299-61547318 | None:intergenic | 45.0% |
| ! | GGAAGATAGTGGTGCACTAA+CGG | - | chr3.4:61548177-61548196 | MS.gene38528:intron | 45.0% |
| !! | ACAGTGTTGACCATTCCAGT+TGG | - | chr3.4:61547926-61547945 | MS.gene38528:intron | 45.0% |
| !! | CTTAGAGTCGAGTTTGGTGT+TGG | - | chr3.4:61547332-61547351 | MS.gene38528:intron | 45.0% |
| !! | GGTGTTGGTTGTGCAGAATA+TGG | - | chr3.4:61547347-61547366 | MS.gene38528:intron | 45.0% |
| AGAAGCGGTCTCAAAGGCTT+TGG | - | chr3.4:61546208-61546227 | MS.gene38528:CDS | 50.0% | |
| AGCCATCAGTGAAACCTGTG+TGG | - | chr3.4:61547630-61547649 | MS.gene38528:intron | 50.0% | |
| GCAACAGATTCTCGGTCAGT+GGG | + | chr3.4:61547707-61547726 | None:intergenic | 50.0% | |
| GCCATCAGTGAAACCTGTGT+GGG | - | chr3.4:61547631-61547650 | MS.gene38528:intron | 50.0% | |
| TCAGTGGGACATTGTGGGAA+AGG | + | chr3.4:61547692-61547711 | None:intergenic | 50.0% | |
| TCCCACACAGGTTTCACTGA+TGG | + | chr3.4:61547635-61547654 | None:intergenic | 50.0% | |
| TGCAACAGATTCTCGGTCAG+TGG | + | chr3.4:61547708-61547727 | None:intergenic | 50.0% | |
| TGCTTGCAGGTTATGTGTGG+AGG | - | chr3.4:61547864-61547883 | MS.gene38528:intron | 50.0% | |
| ! | CGGGTTGACAATATGGGTGA+TGG | + | chr3.4:61546899-61546918 | None:intergenic | 50.0% |
| CCAAGCATCTTGCATGGTGC+AGG | + | chr3.4:61548277-61548296 | None:intergenic | 55.0% | |
| CCTGCACCATGCAAGATGCT+TGG | - | chr3.4:61548274-61548293 | MS.gene38528:CDS | 55.0% | |
| CTCGGTCAGTGGGACATTGT+GGG | + | chr3.4:61547697-61547716 | None:intergenic | 55.0% | |
| TCTCGGTCAGTGGGACATTG+TGG | + | chr3.4:61547698-61547717 | None:intergenic | 55.0% | |
| ! | AGGGTGCCAAGCATCTTGCA+TGG | + | chr3.4:61548283-61548302 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 61545996 | 61548456 | 61545996 | ID=MS.gene38528 |
| chr3.4 | mRNA | 61545996 | 61548456 | 61545996 | ID=MS.gene38528.t1;Parent=MS.gene38528 |
| chr3.4 | exon | 61548201 | 61548456 | 61548201 | ID=MS.gene38528.t1.exon1;Parent=MS.gene38528.t1 |
| chr3.4 | CDS | 61548201 | 61548456 | 61548201 | ID=cds.MS.gene38528.t1;Parent=MS.gene38528.t1 |
| chr3.4 | exon | 61545996 | 61547152 | 61545996 | ID=MS.gene38528.t1.exon2;Parent=MS.gene38528.t1 |
| chr3.4 | CDS | 61545996 | 61547152 | 61545996 | ID=cds.MS.gene38528.t1;Parent=MS.gene38528.t1 |
| Gene Sequence |
| Protein sequence |
