AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27217


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27217.t1 MTR_8g074070 87.861 173 21 0 1 173 1 173 2.81e-111 320
MS.gene27217.t1 MTR_8g074070 89.349 169 18 0 1 169 1 169 6.12e-110 317
MS.gene27217.t1 MTR_8g074050 88.166 169 20 0 1 169 1 169 1.81e-108 314
MS.gene27217.t1 MTR_3g117420 65.537 177 61 0 1 177 1 177 1.51e-80 243
MS.gene27217.t1 MTR_3g117485 64.327 171 55 4 7 173 5 173 7.98e-68 210
MS.gene27217.t1 MTR_4g116010 45.455 165 82 3 13 177 15 171 1.51e-40 140
MS.gene27217.t1 MTR_3g117485 64.835 91 29 2 85 173 12 101 4.90e-34 121
MS.gene27217.t1 MTR_3g026150 40.764 157 90 2 10 166 19 172 1.35e-31 115
MS.gene27217.t1 MTR_3g026150 40.000 160 93 2 10 169 19 175 4.74e-31 115
MS.gene27217.t1 MTR_7g045650 41.026 117 67 1 50 166 58 172 1.41e-29 110
MS.gene27217.t1 MTR_7g062550 37.013 154 93 3 14 167 24 173 1.53e-28 108
MS.gene27217.t1 MTR_2g437380 34.940 166 100 4 15 177 17 177 1.32e-27 106
MS.gene27217.t1 MTR_7g062580 36.242 149 91 3 14 162 19 163 1.72e-26 103
MS.gene27217.t1 MTR_7g063730 41.593 113 64 1 51 163 63 173 8.71e-26 101
MS.gene27217.t1 MTR_7g062570 40.870 115 66 1 52 166 55 167 1.13e-25 101
MS.gene27217.t1 MTR_7g062600 35.294 153 95 3 14 166 15 163 1.23e-25 101
MS.gene27217.t1 MTR_2g072930 35.294 153 92 2 14 164 16 163 9.02e-25 94.7
MS.gene27217.t1 MTR_2g072910 33.133 166 104 2 14 177 16 176 4.13e-24 95.5
MS.gene27217.t1 MTR_2g072910 33.133 166 104 2 14 177 16 176 9.98e-24 95.9
MS.gene27217.t1 MTR_5g048570 32.927 164 103 2 14 177 12 168 2.65e-23 94.7
MS.gene27217.t1 MTR_3g070860 33.775 151 96 2 15 163 15 163 9.16e-23 93.2
MS.gene27217.t1 MTR_5g055900 36.364 154 91 3 14 166 12 159 1.33e-22 92.8
MS.gene27217.t1 MTR_2g072890 30.723 166 109 3 14 177 16 177 1.78e-22 92.4
MS.gene27217.t1 MTR_5g048550 36.242 149 86 3 14 160 12 153 4.92e-22 91.3
MS.gene27217.t1 MTR_4g115990 37.013 154 59 5 31 177 28 150 9.01e-21 87.4
MS.gene27217.t1 MTR_5g055690 32.934 167 102 4 3 166 1 160 1.54e-20 86.3
MS.gene27217.t1 MTR_5g011250 26.744 172 120 3 12 177 5 176 2.16e-20 86.7
MS.gene27217.t1 MTR_5g055690 34.615 156 92 4 14 166 12 160 2.98e-20 86.3
MS.gene27217.t1 MTR_0009s0050 34.839 155 92 3 14 166 12 159 5.11e-20 85.9
MS.gene27217.t1 MTR_0009s0050 34.839 155 92 3 14 166 12 159 5.70e-20 85.5
MS.gene27217.t1 MTR_5g048470 33.129 163 100 3 14 173 17 173 7.98e-20 85.1
MS.gene27217.t1 MTR_7g068650 31.373 153 101 2 15 163 15 167 1.76e-19 84.3
MS.gene27217.t1 MTR_5g082750 31.126 151 100 2 15 163 14 162 4.63e-19 83.2
MS.gene27217.t1 MTR_3g072820 29.310 174 103 6 12 177 4 165 6.46e-19 82.4
MS.gene27217.t1 MTR_5g048850 31.847 157 94 4 14 166 12 159 9.34e-19 81.3
MS.gene27217.t1 MTR_5g048850 32.258 155 96 3 14 166 12 159 1.76e-18 81.6
MS.gene27217.t1 MTR_4g015790 34.167 120 77 1 46 163 56 175 1.78e-18 81.6
MS.gene27217.t1 MTR_0328s0030 33.333 159 97 3 10 166 6 157 8.00e-18 79.7
MS.gene27217.t1 MTR_2g437380 37.349 83 52 0 95 177 1 83 1.58e-17 77.8
MS.gene27217.t1 MTR_8g064200 30.723 166 107 3 14 177 17 176 2.13e-17 78.6
MS.gene27217.t1 MTR_8g064200 30.723 166 107 3 14 177 22 181 2.16e-17 78.6
MS.gene27217.t1 MTR_0009s0410 30.488 164 105 3 9 170 6 162 4.09e-17 74.7
MS.gene27217.t1 MTR_5g048740 33.962 159 96 3 10 166 6 157 4.80e-17 77.4
MS.gene27217.t1 MTR_7g062560 31.973 147 89 3 15 161 27 162 7.18e-17 77.0
MS.gene27217.t1 MTR_5g059130 31.538 130 83 3 50 177 42 167 8.01e-17 76.6
MS.gene27217.t1 MTR_5g055680 36.207 116 72 1 51 166 46 159 1.12e-16 76.6
MS.gene27217.t1 MTR_1g033810 33.621 116 77 0 51 166 46 161 1.43e-16 76.3
MS.gene27217.t1 MTR_5g055820 30.128 156 98 3 14 166 12 159 3.67e-16 75.1
MS.gene27217.t1 MTR_3g072810 27.219 169 109 5 13 177 4 162 4.66e-16 74.7
MS.gene27217.t1 MTR_0009s0480 30.625 160 102 3 9 166 6 158 7.77e-16 73.2
MS.gene27217.t1 MTR_0009s0480 30.625 160 102 3 9 166 6 158 1.09e-15 73.9
MS.gene27217.t1 MTR_3g026150 46.269 67 36 0 103 169 6 72 7.39e-15 70.5
MS.gene27217.t1 MTR_3g117430 53.846 65 13 1 101 165 5 52 1.01e-14 67.4
MS.gene27217.t1 MTR_5g059140 30.000 130 83 3 52 177 42 167 1.46e-14 70.5
MS.gene27217.t1 MTR_1g062110 28.743 167 108 5 13 173 25 186 3.57e-14 69.3
MS.gene27217.t1 MTR_5g055800 29.936 157 101 3 9 163 7 156 4.68e-14 69.3
MS.gene27217.t1 MTR_1g062110 28.235 170 105 6 13 173 25 186 4.74e-14 69.3
MS.gene27217.t1 MTR_5g065010 34.266 143 85 5 14 151 3 141 6.12e-12 63.2
MS.gene27217.t1 MTR_1g034140 33.094 139 74 5 52 177 27 159 6.09e-11 60.1
MS.gene27217.t1 MTR_7g102820 31.707 123 79 4 46 166 61 180 7.58e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27217.t1 AT1G49390 44.937 158 85 2 13 169 7 163 1.92e-42 145
MS.gene27217.t1 AT5G20400 42.405 158 89 2 13 169 7 163 7.73e-39 135
MS.gene27217.t1 AT5G54000 43.827 162 82 4 13 169 7 164 6.18e-38 133
MS.gene27217.t1 AT5G20550 41.358 162 85 5 13 169 7 163 9.05e-36 127
MS.gene27217.t1 AT1G49390 57.143 84 36 0 86 169 1 84 6.52e-32 115
MS.gene27217.t1 AT3G21420 39.157 166 98 2 15 177 17 182 1.40e-30 114
MS.gene27217.t1 AT5G54000 52.381 84 40 0 86 169 1 84 2.89e-28 106
MS.gene27217.t1 AT1G17020 39.516 124 75 0 50 173 51 174 4.11e-26 102
MS.gene27217.t1 AT1G17010 36.310 168 99 3 14 177 16 179 6.25e-26 102
MS.gene27217.t1 AT4G25300 39.024 123 75 0 51 173 51 173 2.54e-25 100
MS.gene27217.t1 AT1G78550 39.098 133 77 1 41 173 46 174 8.93e-23 93.6
MS.gene27217.t1 AT2G38240 34.641 153 90 4 14 163 11 156 1.29e-22 92.8
MS.gene27217.t1 AT4G25310 34.337 166 101 4 14 177 15 174 2.39e-19 83.6
MS.gene27217.t1 AT4G25310 34.337 166 101 4 14 177 15 174 3.28e-19 83.6
MS.gene27217.t1 AT5G05600 30.128 156 95 3 15 163 27 175 5.11e-19 82.4
MS.gene27217.t1 AT5G05600 30.464 151 101 2 15 163 27 175 1.19e-18 82.0
MS.gene27217.t1 AT4G22880 27.841 176 120 4 9 177 1 176 1.26e-18 82.0
MS.gene27217.t1 AT4G22880 27.841 176 120 4 9 177 1 176 1.26e-18 82.0
MS.gene27217.t1 AT4G22880 27.841 176 120 4 9 177 1 176 1.26e-18 82.0
MS.gene27217.t1 AT3G11180 33.113 151 97 2 15 163 56 204 2.52e-18 81.6
MS.gene27217.t1 AT3G11180 33.113 151 97 2 15 163 56 204 2.60e-18 81.6
MS.gene27217.t1 AT2G36690 31.138 167 109 4 13 175 19 183 1.14e-17 79.3
MS.gene27217.t1 AT2G36690 31.138 167 109 4 13 175 19 183 1.14e-17 79.3
MS.gene27217.t1 AT5G08640 29.060 117 80 2 52 166 40 155 3.34e-17 77.8
MS.gene27217.t1 AT5G08640 29.060 117 80 2 52 166 40 155 3.34e-17 77.8
MS.gene27217.t1 AT5G63580 35.088 114 66 4 52 163 19 126 6.64e-17 75.9
MS.gene27217.t1 AT5G63580 34.188 117 69 4 52 166 19 129 7.65e-17 75.9
MS.gene27217.t1 AT3G55970 29.487 156 101 4 15 164 14 166 7.77e-17 76.6
MS.gene27217.t1 AT3G55970 29.487 156 101 4 15 164 14 166 1.06e-16 76.6
MS.gene27217.t1 AT5G63590 31.405 121 77 2 48 166 10 126 2.16e-16 75.5
MS.gene27217.t1 AT3G19010 31.387 137 79 5 52 175 28 162 2.44e-15 72.4
MS.gene27217.t1 AT3G19010 31.387 137 79 5 52 175 28 162 2.61e-15 72.4
MS.gene27217.t1 AT3G19010 31.387 137 79 5 52 175 28 162 4.23e-15 72.0
MS.gene27217.t1 AT3G19010 31.387 137 79 5 52 175 28 162 4.23e-15 72.0
MS.gene27217.t1 AT5G43935 31.667 120 71 5 52 168 19 130 5.86e-14 68.6
MS.gene27217.t1 AT5G63595 27.273 132 86 3 44 175 19 140 7.55e-14 68.2
MS.gene27217.t1 AT1G78550 38.947 95 57 1 79 173 3 96 1.04e-13 67.8
MS.gene27217.t1 AT1G55290 31.579 152 90 6 14 160 25 167 1.41e-13 67.8
MS.gene27217.t1 AT1G44090 33.588 131 75 4 20 146 37 159 2.70e-13 67.0
MS.gene27217.t1 AT3G19000 30.303 165 90 7 27 177 16 169 3.83e-13 66.2
MS.gene27217.t1 AT5G63600 29.231 130 84 4 48 177 29 150 4.22e-13 66.2
MS.gene27217.t1 AT5G63600 29.231 130 84 4 48 177 29 150 4.49e-13 66.2
MS.gene27217.t1 AT3G19000 30.303 165 90 7 27 177 16 169 5.35e-13 66.2
MS.gene27217.t1 AT3G60290 30.323 155 97 6 14 163 15 163 1.81e-11 62.0
MS.gene27217.t1 AT5G07480 34.746 118 66 6 52 163 44 156 2.60e-11 61.2
MS.gene27217.t1 AT4G25420 29.365 126 83 2 20 144 34 154 2.74e-11 61.2
MS.gene27217.t1 AT4G25420 29.365 126 83 2 20 144 34 154 3.11e-11 60.8
MS.gene27217.t1 AT3G13610 30.435 138 85 4 46 177 56 188 6.56e-11 60.1

Find 32 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCATGTGGCTTCTTTC+TGG 0.080795 8.3:+28945731 MS.gene27217:CDS
ACCTGAAATCAATGGGGTTT+TGG 0.196014 8.3:-28946358 None:intergenic
TCATCGTATATATAATTATT+TGG 0.208477 8.3:-28945579 None:intergenic
CCCAAAACCCCATTGATTTC+AGG 0.235480 8.3:+28946357 MS.gene27217:CDS
CAAAACAATGTTGAAGGATA+TGG 0.295542 8.3:+28946236 MS.gene27217:CDS
CGAGCTCAAAGATATTTAAA+AGG 0.295857 8.3:+28946853 MS.gene27217:CDS
CAGAAAATCAAAGGCTTGAT+TGG 0.307300 8.3:+28946276 MS.gene27217:CDS
ATCAAAGGAATTTCAAACTT+TGG 0.350874 8.3:+28946333 MS.gene27217:CDS
AATTTATACCTGAAATCAAT+GGG 0.410650 8.3:-28946365 None:intergenic
TTGAAATTCCTTTGATCTTG+AGG 0.440037 8.3:-28946326 None:intergenic
GAATTTATACCTGAAATCAA+TGG 0.446659 8.3:-28946366 None:intergenic
ATATACGATGAAGGTGGTGT+TGG 0.483802 8.3:+28945591 MS.gene27217:CDS
AGGTAGAGATAGTCAGTAGT+AGG 0.491532 8.3:+28945517 MS.gene27217:CDS
AGGGAACAAAACAATGTTGA+AGG 0.509784 8.3:+28946230 MS.gene27217:CDS
AATAATTATATATACGATGA+AGG 0.519167 8.3:+28945582 MS.gene27217:CDS
CAAAATATTCAGAAAATCAA+AGG 0.528313 8.3:+28946267 MS.gene27217:CDS
GCTCGTTTCTTGACAAAGTG+AGG 0.541459 8.3:+28946153 MS.gene27217:CDS
AGGTTGGCAATGTCAATGAT+TGG 0.563323 8.3:-28945657 None:intergenic
CACATGAATGAAGTGCAGCT+TGG 0.566650 8.3:-28945719 None:intergenic
AGCTCATGTTGTGCTGCAGA+TGG 0.571331 8.3:-28945687 None:intergenic
CTCGTTTCTTGACAAAGTGA+GGG 0.576302 8.3:+28946154 MS.gene27217:CDS
GAAACGAGCTTGTCATCCCA+TGG 0.585363 8.3:-28946139 None:intergenic
GCTATTCAGGTGATAAACCA+TGG 0.590690 8.3:+28946122 MS.gene27217:intron
CAAGCTGCACTTCATTCATG+TGG 0.592642 8.3:+28945720 MS.gene27217:CDS
AGGTACATCCTCAAGATCAA+AGG 0.594954 8.3:+28946318 MS.gene27217:CDS
CTATTCAGGTGATAAACCAT+GGG 0.614544 8.3:+28946123 MS.gene27217:intron
ACATGAAAATCAGATTCTGA+AGG 0.615441 8.3:-28945633 None:intergenic
AATTATATATACGATGAAGG+TGG 0.618368 8.3:+28945585 MS.gene27217:CDS
AGAGATAGTCAGTAGTAGGT+CGG 0.620843 8.3:+28945521 MS.gene27217:CDS
TGCAGATGGAGAAGTGAGGT+TGG 0.627729 8.3:-28945673 None:intergenic
ATTTATACCTGAAATCAATG+GGG 0.672971 8.3:-28946364 None:intergenic
GTGCTGCAGATGGAGAAGTG+AGG 0.764274 8.3:-28945677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTAAAAATTTACTTTTT+AGG + chr8.3:28946017-28946036 MS.gene27217:intron 10.0%
!! AATAATTATATATACGATGA+AGG + chr8.3:28945582-28945601 MS.gene27217:CDS 15.0%
!! ATAGTACATCATTAAAAAAA+AGG - chr8.3:28946746-28946765 None:intergenic 15.0%
!! TCATCGTATATATAATTATT+TGG - chr8.3:28945582-28945601 None:intergenic 15.0%
!!! AAGTTCTTAAACTTTTTTTT+TGG + chr8.3:28946400-28946419 MS.gene27217:intron 15.0%
!!! TAAATACTATTTTTTTACTG+AGG - chr8.3:28946782-28946801 None:intergenic 15.0%
!! AAAAAAGTTTAAGAACTTAG+TGG - chr8.3:28946398-28946417 None:intergenic 20.0%
!! AATTTATACCTGAAATCAAT+GGG - chr8.3:28946368-28946387 None:intergenic 20.0%
!! CAAAATATTCAGAAAATCAA+AGG + chr8.3:28946267-28946286 MS.gene27217:CDS 20.0%
!! GAAAAAAATAGTGTATGATA+CGG - chr8.3:28946087-28946106 None:intergenic 20.0%
!!! TTAAAGCTTGAATTTTAAAG+AGG - chr8.3:28945834-28945853 None:intergenic 20.0%
!!! TTTTTACTTATAAATGTGAC+CGG - chr8.3:28946007-28946026 None:intergenic 20.0%
! AAGAAAAGCAAAAATATGCA+AGG + chr8.3:28946210-28946229 MS.gene27217:CDS 25.0%
! AATTATATATACGATGAAGG+TGG + chr8.3:28945585-28945604 MS.gene27217:CDS 25.0%
! AGAAAAGCAAAAATATGCAA+GGG + chr8.3:28946211-28946230 MS.gene27217:CDS 25.0%
! ATAAATAAAATGTTTGCAGC+AGG - chr8.3:28945785-28945804 None:intergenic 25.0%
! ATCAAAGGAATTTCAAACTT+TGG + chr8.3:28946333-28946352 MS.gene27217:CDS 25.0%
! ATTTATACCTGAAATCAATG+GGG - chr8.3:28946367-28946386 None:intergenic 25.0%
! GAATTTATACCTGAAATCAA+TGG - chr8.3:28946369-28946388 None:intergenic 25.0%
! TAATAAACTAAACTATCCCA+CGG - chr8.3:28946707-28946726 None:intergenic 25.0%
! TATAAAATTAGTACTCCTTC+CGG + chr8.3:28945985-28946004 MS.gene27217:intron 25.0%
!!! TAGTATTATTTTGAGTGAGA+GGG - chr8.3:28945911-28945930 None:intergenic 25.0%
!!! TATTTTTGCTTTTCTTCCTT+TGG - chr8.3:28946206-28946225 None:intergenic 25.0%
ACATGAAAATCAGATTCTGA+AGG - chr8.3:28945636-28945655 None:intergenic 30.0%
ACCACCAAATCAATATAAGT+GGG - chr8.3:28946626-28946645 None:intergenic 30.0%
CAAAACAATGTTGAAGGATA+TGG + chr8.3:28946236-28946255 MS.gene27217:CDS 30.0%
CGAGCTCAAAGATATTTAAA+AGG + chr8.3:28946853-28946872 MS.gene27217:CDS 30.0%
TCATTAAGTTTGATTCTCTC+CGG + chr8.3:28946672-28946691 MS.gene27217:intron 30.0%
TCGAACTTAGAATCAGAAAA+AGG - chr8.3:28946836-28946855 None:intergenic 30.0%
TTGAAATTCCTTTGATCTTG+AGG - chr8.3:28946329-28946348 None:intergenic 30.0%
! CAAACCCACTTATATTGATT+TGG + chr8.3:28946619-28946638 MS.gene27217:intron 30.0%
! CAAATCAATATAAGTGGGTT+TGG - chr8.3:28946621-28946640 None:intergenic 30.0%
!! ATAGCTTTACATTTTGCTGT+AGG + chr8.3:28946446-28946465 MS.gene27217:intron 30.0%
!! TAGCTTTACATTTTGCTGTA+GGG + chr8.3:28946447-28946466 MS.gene27217:intron 30.0%
!! TTATATTGATTTGGTGGTGT+TGG + chr8.3:28946628-28946647 MS.gene27217:intron 30.0%
!!! CTAGTATTATTTTGAGTGAG+AGG - chr8.3:28945912-28945931 None:intergenic 30.0%
!!! GCAATTTTTTGAACTTCCAA+AGG + chr8.3:28946187-28946206 MS.gene27217:CDS 30.0%
!!! GTGTGACAGATTATTTTTGA+AGG + chr8.3:28946298-28946317 MS.gene27217:CDS 30.0%
AGGGAACAAAACAATGTTGA+AGG + chr8.3:28946230-28946249 MS.gene27217:CDS 35.0%
ATGGTTTATCACCTGAATAG+CGG - chr8.3:28946123-28946142 None:intergenic 35.0%
CACCACCAAATCAATATAAG+TGG - chr8.3:28946627-28946646 None:intergenic 35.0%
CAGAAAATCAAAGGCTTGAT+TGG + chr8.3:28946276-28946295 MS.gene27217:CDS 35.0%
CTATTCAGGTGATAAACCAT+GGG + chr8.3:28946123-28946142 MS.gene27217:intron 35.0%
TACTTATAAATGTGACCGGA+AGG - chr8.3:28946003-28946022 None:intergenic 35.0%
! TCAATATAAGTGGGTTTGGA+TGG - chr8.3:28946617-28946636 None:intergenic 35.0%
!! ACCCACTTATATTGATTTGG+TGG + chr8.3:28946622-28946641 MS.gene27217:intron 35.0%
!! AGCTTTACATTTTGCTGTAG+GGG + chr8.3:28946448-28946467 MS.gene27217:intron 35.0%
AGAGATAGTCAGTAGTAGGT+CGG + chr8.3:28945521-28945540 MS.gene27217:CDS 40.0%
AGGTACATCCTCAAGATCAA+AGG + chr8.3:28946318-28946337 MS.gene27217:CDS 40.0%
AGGTAGAGATAGTCAGTAGT+AGG + chr8.3:28945517-28945536 MS.gene27217:CDS 40.0%
AGGTTGGCAATGTCAATGAT+TGG - chr8.3:28945660-28945679 None:intergenic 40.0%
ATATACGATGAAGGTGGTGT+TGG + chr8.3:28945591-28945610 MS.gene27217:CDS 40.0%
CTAAACTATCCCACGGAAAT+TGG - chr8.3:28946700-28946719 None:intergenic 40.0%
CTCGTTTCTTGACAAAGTGA+GGG + chr8.3:28946154-28946173 MS.gene27217:CDS 40.0%
GCTATTCAGGTGATAAACCA+TGG + chr8.3:28946122-28946141 MS.gene27217:intron 40.0%
TCATTCATGTGGCTTCTTTC+TGG + chr8.3:28945731-28945750 MS.gene27217:CDS 40.0%
! ACCTGAAATCAATGGGGTTT+TGG - chr8.3:28946361-28946380 None:intergenic 40.0%
! CCTGAAATCAATGGGGTTTT+GGG - chr8.3:28946360-28946379 None:intergenic 40.0%
! CTGAAATCAATGGGGTTTTG+GGG - chr8.3:28946359-28946378 None:intergenic 40.0%
! TCAACTGTTTTCCGCTATTC+AGG + chr8.3:28946109-28946128 MS.gene27217:intron 40.0%
CAAGCTGCACTTCATTCATG+TGG + chr8.3:28945720-28945739 MS.gene27217:CDS 45.0%
CACATGAATGAAGTGCAGCT+TGG - chr8.3:28945722-28945741 None:intergenic 45.0%
GCTCGTTTCTTGACAAAGTG+AGG + chr8.3:28946153-28946172 MS.gene27217:CDS 45.0%
TATCCCACGGAAATTGGTAC+CGG - chr8.3:28946694-28946713 None:intergenic 45.0%
!! CCCAAAACCCCATTGATTTC+AGG + chr8.3:28946357-28946376 MS.gene27217:CDS 45.0%
AGCTCATGTTGTGCTGCAGA+TGG - chr8.3:28945690-28945709 None:intergenic 50.0%
GAAACGAGCTTGTCATCCCA+TGG - chr8.3:28946142-28946161 None:intergenic 50.0%
TCTCCGGTACCAATTTCCGT+GGG + chr8.3:28946688-28946707 MS.gene27217:intron 50.0%
TGCAGATGGAGAAGTGAGGT+TGG - chr8.3:28945676-28945695 None:intergenic 50.0%
CTCTCCGGTACCAATTTCCG+TGG + chr8.3:28946687-28946706 MS.gene27217:intron 55.0%
GTGCTGCAGATGGAGAAGTG+AGG - chr8.3:28945680-28945699 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 28945501 28946884 28945501 ID=MS.gene27217
chr8.3 mRNA 28945501 28946884 28945501 ID=MS.gene27217.t1;Parent=MS.gene27217
chr8.3 exon 28945501 28945752 28945501 ID=MS.gene27217.t1.exon1;Parent=MS.gene27217.t1
chr8.3 CDS 28945501 28945752 28945501 ID=cds.MS.gene27217.t1;Parent=MS.gene27217.t1
chr8.3 exon 28946131 28946378 28946131 ID=MS.gene27217.t1.exon2;Parent=MS.gene27217.t1
chr8.3 CDS 28946131 28946378 28946131 ID=cds.MS.gene27217.t1;Parent=MS.gene27217.t1
chr8.3 exon 28946851 28946884 28946851 ID=MS.gene27217.t1.exon3;Parent=MS.gene27217.t1
chr8.3 CDS 28946851 28946884 28946851 ID=cds.MS.gene27217.t1;Parent=MS.gene27217.t1
Gene Sequence

>MS.gene27217

ATGGAAGTGTCGGCAGAGGTAGAGATAGTCAGTAGTAGGTCGGTTCAAGAACTTGCATTGAATTCTGAAAATCTGCTACCAAATAATTATATATACGATGAAGGTGGTGTTGGATTTCGTGATGCTCTTCTTCCTTCAGAATCTGATTTTCATGTTCCAATCATTGACATTGCCAACCTCACTTCTCCATCTGCAGCACAACATGAGCTTCTTAAACTCCAAGCTGCACTTCATTCATGTGGCTTCTTTCTGGTCTCATTTTCATTATTTATTTATTTGTACCTGCTGCAAACATTTTATTTATACTTACTTTTATTTTAGTTATGTATTCCTCTTTAAAATTCAAGCTTTAATTTAGAATTTCATAAATCAAACAAAATTAGAAAAACAAAATGAAAATAACTACTCCCTCTCACTCAAAATAATACTAGTTTAAGAATTGTGCACGATTTTTAAAGAAATAATTAATTGTGTTGATTTCAATTATAAAATTAGTACTCCTTCCGGTCACATTTATAAGTAAAAATTTACTTTTTAGGTTCATTGAATATAATATCTCTCTTTCTATCGCATCACTAATATACCGTATCATACACTATTTTTTTCACTCAACTGTTTTCCGCTATTCAGGTGATAAACCATGGGATGACAAGCTCGTTTCTTGACAAAGTGAGGGAAGTTTCAAAGCAATTTTTTGAACTTCCAAAGGAAGAAAAGCAAAAATATGCAAGGGAACAAAACAATGTTGAAGGATATGGAAATGATACAAAATATTCAGAAAATCAAAGGCTTGATTGGTGTGACAGATTATTTTTGAAGGTACATCCTCAAGATCAAAGGAATTTCAAACTTTGGCCCCAAAACCCCATTGATTTCAGGTATAAATTCTTATCGCCACTAAGTTCTTAAACTTTTTTTTTGGTACAAGAAGTTACTGATACTTTAATAGCTTTACATTTTGCTGTAGGGGATATTTTTATACTTTAAGCATAAACTATTTAGATTTAAATGTATTTTCGATCTCTGTAGAGCATAATCTTGTAACTGTAAGTATAGTTCAAATCTCATAGAAGACGTTGTAAAATGATTGTCGCTTTAATTAACAAAAAATTTCCATCCAAACCCACTTATATTGATTTGGTGGTGTTGGTTTGAGTTTTTTAAAATGTGCTCATTAAGTTTGATTCTCTCCGGTACCAATTTCCGTGGGATAGTTTAGTTTATTAAAAAATATTTCTTTTTCCTTTTTTTTAATGATGTACTATTTTTTGTTTTTAGCCTCAGTAAAAAAATAGTATTTATAAATATACAACTTTCTTTTTATGATTTTTACCTTTTTCTGATTCTAAGTTCGAGCTCAAAGATATTTAAAAGGAGATTGTAA

Protein sequence

>MS.gene27217.t1

MEVSAEVEIVSSRSVQELALNSENLLPNNYIYDEGGVGFRDALLPSESDFHVPIIDIANLTSPSAAQHELLKLQAALHSCGFFLVINHGMTSSFLDKVREVSKQFFELPKEEKQKYAREQNNVEGYGNDTKYSENQRLDWCDRLFLKVHPQDQRNFKLWPQNPIDFSSSSKIFKRRL