AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41915


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41915.t1 MTR_6g047590 93.916 263 16 0 1 263 215 477 1.38e-166 469
MS.gene41915.t1 MTR_6g047610 83.270 263 44 0 1 263 215 477 1.69e-157 447
MS.gene41915.t1 MTR_6g047640 84.030 263 42 0 1 263 216 478 3.78e-153 436
MS.gene41915.t1 MTR_6g047640 78.327 263 38 1 1 263 216 459 4.17e-144 412
MS.gene41915.t1 MTR_1g100180 50.965 259 127 0 1 259 228 486 4.29e-89 273
MS.gene41915.t1 MTR_1g021740 41.245 257 150 1 4 259 223 479 2.31e-65 211
MS.gene41915.t1 MTR_8g069470 37.931 261 161 1 4 263 238 498 3.10e-64 209
MS.gene41915.t1 MTR_7g087410 42.292 253 145 1 8 259 134 386 4.15e-64 206
MS.gene41915.t1 MTR_5g033100 42.412 257 147 1 4 259 244 500 2.66e-63 207
MS.gene41915.t1 MTR_7g087410 42.292 253 145 1 8 259 223 475 2.74e-63 206
MS.gene41915.t1 MTR_7g087430 39.921 253 151 1 8 259 134 386 3.25e-62 201
MS.gene41915.t1 MTR_7g087400 38.889 252 154 0 8 259 222 473 2.56e-61 201
MS.gene41915.t1 MTR_7g087370 38.492 252 155 0 8 259 193 444 1.29e-59 196
MS.gene41915.t1 MTR_2g088400 38.372 258 157 1 8 263 244 501 4.35e-59 195
MS.gene41915.t1 MTR_2g022980 37.795 254 156 1 8 259 240 493 4.61e-59 195
MS.gene41915.t1 MTR_5g090290 39.357 249 151 0 9 257 241 489 4.79e-58 194
MS.gene41915.t1 MTR_6g027200 39.683 252 152 0 8 259 229 480 9.94e-56 186
MS.gene41915.t1 MTR_4g048000 38.372 258 157 1 4 259 252 509 1.01e-54 184
MS.gene41915.t1 MTR_3g099700 35.094 265 170 2 1 263 231 495 1.29e-54 184
MS.gene41915.t1 MTR_8g063590 40.316 253 148 2 8 257 245 497 5.89e-53 179
MS.gene41915.t1 MTR_5g032720 37.023 262 163 2 4 263 224 485 2.00e-51 175
MS.gene41915.t1 MTR_6g027190 37.891 256 159 0 8 263 217 472 3.66e-51 174
MS.gene41915.t1 MTR_5g032750 37.872 235 145 1 26 259 247 481 7.44e-50 171
MS.gene41915.t1 MTR_3g099720 33.735 249 164 1 4 251 229 477 4.11e-46 161
MS.gene41915.t1 MTR_2g088400 39.252 214 128 1 8 219 244 457 4.80e-46 160
MS.gene41915.t1 MTR_5g087930 34.717 265 138 6 8 263 218 456 1.12e-43 154
MS.gene41915.t1 MTR_6g081410 33.333 267 174 2 1 263 210 476 1.27e-42 151
MS.gene41915.t1 MTR_6g081780 33.462 260 169 2 1 256 210 469 2.00e-42 151
MS.gene41915.t1 MTR_2g078930 36.145 249 157 1 1 247 228 476 3.86e-42 150
MS.gene41915.t1 MTR_8g106670 33.191 235 157 0 23 257 221 455 1.09e-41 149
MS.gene41915.t1 MTR_2g079020 36.145 249 157 1 1 247 222 470 1.80e-41 149
MS.gene41915.t1 MTR_6g066380 33.708 267 173 2 1 263 212 478 2.46e-40 145
MS.gene41915.t1 MTR_2g078990 35.600 250 157 2 1 247 45 293 9.82e-40 140
MS.gene41915.t1 MTR_2g078970 35.600 250 157 2 1 247 216 464 4.45e-39 142
MS.gene41915.t1 MTR_6g081240 33.198 247 163 1 5 249 199 445 1.07e-37 137
MS.gene41915.t1 MTR_1g108990 32.895 228 153 0 29 256 240 467 1.24e-37 138
MS.gene41915.t1 MTR_1g108840 32.735 223 150 0 34 256 261 483 1.99e-36 135
MS.gene41915.t1 MTR_6g081400 30.233 258 178 1 1 256 201 458 3.16e-36 134
MS.gene41915.t1 MTR_6g081390 30.620 258 177 1 1 256 198 455 1.57e-35 132
MS.gene41915.t1 MTR_6g081810 33.810 210 139 0 47 256 234 443 1.75e-34 129
MS.gene41915.t1 MTR_6g081300 29.412 255 178 1 5 257 199 453 3.03e-34 129
MS.gene41915.t1 MTR_7g082810 31.140 228 157 0 29 256 235 462 4.56e-34 128
MS.gene41915.t1 MTR_2g078960 34.940 249 160 1 1 247 218 466 4.66e-34 128
MS.gene41915.t1 MTR_6g081310 31.102 254 173 1 5 256 197 450 3.01e-33 126
MS.gene41915.t1 MTR_2g079030 36.410 195 124 0 53 247 319 513 8.57e-33 125
MS.gene41915.t1 MTR_1g108810 31.349 252 171 1 1 250 219 470 2.79e-32 123
MS.gene41915.t1 MTR_6g004220 29.825 228 160 0 29 256 239 466 2.59e-31 120
MS.gene41915.t1 MTR_1g109060 32.479 234 158 0 23 256 233 466 6.55e-31 119
MS.gene41915.t1 MTR_7g082800 29.437 231 158 1 26 256 159 384 1.12e-30 118
MS.gene41915.t1 MTR_1g109060 32.636 239 158 1 23 261 233 468 1.29e-30 119
MS.gene41915.t1 MTR_6g004220 30.769 221 153 0 29 249 246 466 1.94e-30 119
MS.gene41915.t1 MTR_5g090280 30.534 262 148 3 23 257 151 405 4.30e-30 117
MS.gene41915.t1 MTR_5g010830 27.347 245 176 1 12 254 261 505 4.17e-24 101
MS.gene41915.t1 MTR_0039s0080 26.471 238 175 0 11 248 235 472 2.72e-23 99.0
MS.gene41915.t1 MTR_1g101500 26.891 238 172 1 13 248 261 498 5.42e-23 98.2
MS.gene41915.t1 MTR_3g111020 28.302 212 152 0 43 254 280 491 2.11e-21 93.6
MS.gene41915.t1 MTR_5g067460 27.805 205 140 2 51 251 292 492 1.47e-20 90.9
MS.gene41915.t1 MTR_6g043810 27.700 213 153 1 37 248 264 476 7.01e-20 89.0
MS.gene41915.t1 MTR_6g043810 27.700 213 153 1 37 248 254 466 7.40e-20 89.0
MS.gene41915.t1 MTR_2g435930 26.263 198 146 0 51 248 272 469 2.60e-17 81.6
MS.gene41915.t1 MTR_6g088805 25.877 228 165 2 26 251 236 461 8.06e-17 80.1
MS.gene41915.t1 MTR_4g027920 21.176 255 197 2 1 251 341 595 2.44e-15 75.9
MS.gene41915.t1 MTR_5g011540 24.797 246 178 2 18 263 251 489 2.09e-14 72.8
MS.gene41915.t1 MTR_8g102430 24.400 250 170 3 2 251 210 440 3.68e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41915.t1 AT4G00350 52.326 258 123 0 2 259 273 530 1.87e-95 290
MS.gene41915.t1 AT4G25640 54.054 259 119 0 1 259 218 476 4.21e-84 259
MS.gene41915.t1 AT4G25640 54.054 259 119 0 1 259 218 476 9.86e-84 259
MS.gene41915.t1 AT3G26590 42.188 256 146 2 6 259 131 386 2.81e-71 224
MS.gene41915.t1 AT4G25640 54.587 218 99 0 1 218 218 435 4.38e-71 226
MS.gene41915.t1 AT3G26590 42.188 256 146 2 6 259 233 488 2.00e-70 225
MS.gene41915.t1 AT1G47530 42.412 257 147 1 4 259 130 386 1.15e-67 214
MS.gene41915.t1 AT1G12950 39.689 257 154 1 4 259 254 510 4.87e-67 216
MS.gene41915.t1 AT1G47530 42.412 257 147 1 4 259 222 478 5.49e-67 215
MS.gene41915.t1 AT5G38030 39.300 257 155 1 4 259 232 488 8.17e-67 215
MS.gene41915.t1 AT1G23300 39.544 263 156 2 4 263 231 493 5.66e-66 214
MS.gene41915.t1 AT1G11670 40.698 258 151 1 4 259 237 494 3.35e-65 211
MS.gene41915.t1 AT1G61890 38.760 258 156 1 8 263 238 495 4.41e-65 211
MS.gene41915.t1 AT3G21690 38.550 262 159 1 4 263 239 500 3.55e-62 203
MS.gene41915.t1 AT4G21903 38.174 241 149 0 23 263 151 391 2.50e-61 198
MS.gene41915.t1 AT1G61890 39.592 245 146 1 8 250 238 482 7.09e-61 200
MS.gene41915.t1 AT4G21903 38.174 241 149 0 23 263 260 500 3.33e-60 198
MS.gene41915.t1 AT4G21910 38.174 241 149 0 23 263 262 502 1.76e-59 196
MS.gene41915.t1 AT4G21910 38.174 241 149 0 23 263 262 502 1.76e-59 196
MS.gene41915.t1 AT1G33110 39.370 254 153 1 8 260 227 480 2.59e-59 196
MS.gene41915.t1 AT4G21910 38.174 241 149 0 23 263 264 504 2.82e-59 196
MS.gene41915.t1 AT4G21910 38.174 241 149 0 23 263 264 504 2.82e-59 196
MS.gene41915.t1 AT1G33100 38.521 257 157 1 5 260 221 477 3.35e-57 190
MS.gene41915.t1 AT3G59030 40.426 235 140 0 23 257 259 493 3.23e-56 188
MS.gene41915.t1 AT1G33080 37.643 263 163 1 2 263 221 483 9.85e-56 186
MS.gene41915.t1 AT4G21903 39.207 227 138 0 23 249 260 486 1.05e-55 187
MS.gene41915.t1 AT1G33090 38.189 254 156 1 8 260 227 480 4.90e-55 184
MS.gene41915.t1 AT1G33080 38.956 249 151 1 2 249 221 469 6.24e-53 179
MS.gene41915.t1 AT5G65380 37.984 258 158 2 4 259 224 481 1.06e-52 178
MS.gene41915.t1 AT1G61890 40.000 215 125 3 8 219 238 451 2.04e-49 169
MS.gene41915.t1 AT3G03620 36.187 257 163 1 4 259 224 480 5.98e-49 169
MS.gene41915.t1 AT3G03620 36.187 257 163 1 4 259 224 480 5.98e-49 169
MS.gene41915.t1 AT5G10420 38.136 236 145 1 26 260 248 483 5.43e-46 160
MS.gene41915.t1 AT5G17700 35.000 260 168 1 4 262 221 480 2.23e-45 159
MS.gene41915.t1 AT5G17700 35.000 260 168 1 4 262 221 480 2.23e-45 159
MS.gene41915.t1 AT5G44050 35.907 259 164 2 3 259 226 484 2.85e-45 159
MS.gene41915.t1 AT3G23560 35.341 249 159 1 1 247 223 471 8.52e-39 141
MS.gene41915.t1 AT5G52450 32.692 260 171 2 1 257 210 468 4.79e-38 139
MS.gene41915.t1 AT3G23550 33.858 254 166 1 1 252 215 468 8.92e-38 138
MS.gene41915.t1 AT1G15170 31.923 260 175 1 1 258 99 358 4.83e-37 134
MS.gene41915.t1 AT1G15170 31.923 260 175 1 1 258 218 477 3.18e-36 134
MS.gene41915.t1 AT2G34360 33.333 261 162 6 1 257 211 463 1.14e-35 133
MS.gene41915.t1 AT1G15150 30.385 260 179 1 1 258 99 358 3.30e-35 129
MS.gene41915.t1 AT2G04040 29.457 258 180 2 1 256 211 468 3.69e-35 131
MS.gene41915.t1 AT1G15160 30.769 260 178 1 1 258 215 474 9.29e-35 130
MS.gene41915.t1 AT1G15150 30.385 260 179 1 1 258 215 474 1.48e-34 130
MS.gene41915.t1 AT2G04080 28.682 258 182 2 1 256 211 468 3.01e-34 129
MS.gene41915.t1 AT2G04070 29.457 258 180 1 1 256 211 468 1.26e-33 127
MS.gene41915.t1 AT1G73700 32.171 258 173 1 1 256 208 465 1.69e-33 127
MS.gene41915.t1 AT2G04050 30.734 218 151 0 39 256 251 468 2.54e-33 126
MS.gene41915.t1 AT2G04080 28.968 252 177 2 1 250 211 462 1.11e-32 124
MS.gene41915.t1 AT1G33110 37.853 177 109 1 8 183 227 403 1.40e-32 123
MS.gene41915.t1 AT1G71140 29.148 223 158 0 34 256 245 467 1.87e-31 121
MS.gene41915.t1 AT1G66760 32.710 214 144 0 40 253 125 338 1.17e-30 117
MS.gene41915.t1 AT1G15180 33.051 236 158 0 23 258 243 478 1.40e-30 119
MS.gene41915.t1 AT1G66760 32.710 214 144 0 40 253 253 466 6.89e-30 117
MS.gene41915.t1 AT1G66760 31.336 217 149 0 40 256 253 469 7.52e-30 117
MS.gene41915.t1 AT1G66780 28.992 238 161 2 23 256 243 476 3.74e-29 115
MS.gene41915.t1 AT2G34360 33.974 156 103 0 102 257 266 421 2.40e-27 109
MS.gene41915.t1 AT2G04100 28.125 224 161 0 39 262 254 477 2.54e-27 110
MS.gene41915.t1 AT2G04090 28.440 218 156 0 39 256 254 471 8.16e-27 108
MS.gene41915.t1 AT1G64820 28.829 222 150 2 39 256 253 470 2.17e-26 107
MS.gene41915.t1 AT2G04100 29.245 212 150 0 39 250 254 465 2.28e-26 107
MS.gene41915.t1 AT3G59030 34.177 158 104 0 23 180 259 416 1.37e-25 104
MS.gene41915.t1 AT4G23030 26.939 245 177 1 14 256 230 474 1.12e-20 91.3
MS.gene41915.t1 AT2G04066 27.068 133 97 0 124 256 31 163 1.25e-20 86.7
MS.gene41915.t1 AT5G17700 31.461 178 121 1 4 180 221 398 3.51e-20 89.4
MS.gene41915.t1 AT2G38510 24.017 229 173 1 24 251 215 443 3.85e-20 89.7
MS.gene41915.t1 AT1G58340 27.488 211 139 4 51 254 294 497 1.77e-18 85.1
MS.gene41915.t1 AT4G29140 26.772 254 182 3 1 251 240 492 2.81e-18 84.3
MS.gene41915.t1 AT3G23560 31.319 182 123 1 1 180 223 404 1.12e-17 82.4
MS.gene41915.t1 AT5G19700 27.126 247 179 1 2 248 224 469 9.46e-17 79.7
MS.gene41915.t1 AT1G71870 24.121 199 150 1 51 248 277 475 3.58e-16 78.2
MS.gene41915.t1 AT5G52050 25.346 217 162 0 35 251 261 477 3.84e-16 78.2
MS.gene41915.t1 AT1G15180 29.299 157 111 0 24 180 124 280 9.64e-13 67.8
MS.gene41915.t1 AT4G22790 24.453 274 185 5 1 262 212 475 1.39e-11 64.7

Find 0 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + 43357:9384-9403 MS.gene41915:intron 0.0%
!! ATGAAAAATAAAATAATACA+AGG - 43357:10111-10130 None:intergenic 10.0%
!!! ATCATTTTACATTATTTTTA+AGG + 43357:8444-8463 MS.gene41915:intron 10.0%
!!! ATGAATTTTTTTAGTTTTTT+TGG - 43357:10326-10345 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTTAGAAG+AGG - 43357:9414-9433 None:intergenic 10.0%
!!! TTATTTACATTTTAATTTTG+AGG + 43357:8994-9013 MS.gene41915:intron 10.0%
!!! TTTGAATATTTACATTTTTT+TGG + 43357:9631-9650 MS.gene41915:intron 10.0%
!!! TTTTTCCATTAAAAATTATT+GGG + 43357:9470-9489 MS.gene41915:intron 10.0%
!!! TTTTTTCCATTAAAAATTAT+TGG + 43357:9469-9488 MS.gene41915:intron 10.0%
!! AAATACTAACAATTACATTT+AGG + 43357:7650-7669 MS.gene41915:intron 15.0%
!! AAGTGAATAATTGAAAAATA+CGG - 43357:10269-10288 None:intergenic 15.0%
!! AATACTAACAATTACATTTA+GGG + 43357:7651-7670 MS.gene41915:intron 15.0%
!! ATATAATATAATATATGCAG+GGG + 43357:9930-9949 MS.gene41915:intron 15.0%
!! CAGTTATAAAATAAGAAAAT+GGG + 43357:8202-8221 MS.gene41915:intron 15.0%
!! CATAATTCATCTTTATAAAA+TGG + 43357:9245-9264 MS.gene41915:intron 15.0%
!! GATATAATATAATATATGCA+GGG + 43357:9929-9948 MS.gene41915:intron 15.0%
!! TATATATGTCATGTATATAT+TGG - 43357:8139-8158 None:intergenic 15.0%
!! TCAGTTATAAAATAAGAAAA+TGG + 43357:8201-8220 MS.gene41915:intron 15.0%
!! TGAACATTGAAAAAATTATA+TGG - 43357:8623-8642 None:intergenic 15.0%
!! TTAACATAAACACTTAATAT+AGG - 43357:9225-9244 None:intergenic 15.0%
!! TTTAAATTAAAACAAGTTGT+AGG - 43357:10439-10458 None:intergenic 15.0%
!! TTTCTTAAACAATAATCTTA+GGG + 43357:7770-7789 MS.gene41915:intron 15.0%
!!! AACAATTTTTAATAGATAAG+TGG - 43357:9603-9622 None:intergenic 15.0%
!!! ACTCTTTATAAACTATTTTT+AGG + 43357:9289-9308 MS.gene41915:intron 15.0%
!!! ATTCTAATTTTAAAGTTTCT+TGG + 43357:7500-7519 MS.gene41915:intron 15.0%
!!! ATTTATTGATAAAAAAGTGT+AGG - 43357:8544-8563 None:intergenic 15.0%
!!! TTTAATGTTATTTCAATATG+AGG - 43357:8115-8134 None:intergenic 15.0%
!!! TTTTCCATTAAAAATTATTG+GGG + 43357:9471-9490 MS.gene41915:intron 15.0%
!! AATGATTTGACAATTATGAT+TGG + 43357:7430-7449 MS.gene41915:intron 20.0%
!! ATATCAATTGAGTTATAATC+AGG - 43357:10211-10230 None:intergenic 20.0%
!! ATTCAATACAAAAGTAACAT+TGG - 43357:7313-7332 None:intergenic 20.0%
!! CTCAACTAAAAAATTATAGA+AGG - 43357:8315-8334 None:intergenic 20.0%
!! GACTATAAGTTAAACTAATT+AGG + 43357:7626-7645 MS.gene41915:intron 20.0%
!! GGATATAATATAATATATGC+AGG + 43357:9928-9947 MS.gene41915:intron 20.0%
!! GTATTTCATAGTGTAATTTA+TGG + 43357:10588-10607 MS.gene41915:intron 20.0%
!! GTTTCTTAAACAATAATCTT+AGG + 43357:7769-7788 MS.gene41915:intron 20.0%
!! TAATTCAAAGACTAAATTGA+TGG - 43357:10137-10156 None:intergenic 20.0%
!! TACTTAACCAAAAAAAAATG+TGG + 43357:10017-10036 MS.gene41915:intron 20.0%
!! TAGATTGACAATAAATTCTA+AGG - 43357:7938-7957 None:intergenic 20.0%
!! TTATACTTACCAAATTGAAT+AGG - 43357:7246-7265 None:intergenic 20.0%
!!! TCTTATCTCTTTTCAATATA+TGG + 43357:9440-9459 MS.gene41915:intron 20.0%
!!! TGAAAGCATATGATTTTATA+GGG + 43357:10369-10388 MS.gene41915:intron 20.0%
!!! TTCTTATTTTATAACTGAGT+TGG - 43357:8199-8218 None:intergenic 20.0%
!!! TTGAAAGCATATGATTTTAT+AGG + 43357:10368-10387 MS.gene41915:intron 20.0%
!!! TTTACATTTTAATTTTGAGG+AGG + 43357:8997-9016 MS.gene41915:intron 20.0%
! AATTTATGGAATATGATTGC+AGG + 43357:10602-10621 MS.gene41915:intron 25.0%
! ACATTATAGAGTGTAAGTAT+TGG - 43357:9349-9368 None:intergenic 25.0%
! AGAAACTTCATTCATGATTT+AGG - 43357:9192-9211 None:intergenic 25.0%
! ATTATGATGTGTAAATTCAG+TGG - 43357:8513-8532 None:intergenic 25.0%
! CATTGCTAGAATAATTAACA+AGG - 43357:10049-10068 None:intergenic 25.0%
! GAAACTTCATTCATGATTTA+GGG - 43357:9191-9210 None:intergenic 25.0%
! GCATTGTTTAAGCAATTTAA+AGG + 43357:7673-7692 MS.gene41915:intron 25.0%
! TCTTACAAATAATGATTGTG+AGG - 43357:9798-9817 None:intergenic 25.0%
! TTAATGTTCAACTTATCTTG+TGG + 43357:9720-9739 MS.gene41915:intron 25.0%
! TTATTGTCAATCTAAGTACT+TGG + 43357:7944-7963 MS.gene41915:intron 25.0%
! TTGGCATGTTATTACATTAT+TGG + 43357:9076-9095 MS.gene41915:CDS 25.0%
!! AAGACCCCAATAATTTTTAA+TGG - 43357:9478-9497 None:intergenic 25.0%
!! AATTAAGTCTATGTTTTCCT+CGG + 43357:9884-9903 MS.gene41915:intron 25.0%
!! ATGGATATTTTCTATTGCAT+TGG + 43357:7034-7053 MS.gene41915:CDS 25.0%
!! CTCTTTTCAATATATGGATT+TGG + 43357:9446-9465 MS.gene41915:intron 25.0%
!! GACTAGAAATTCATCTTTTA+TGG - 43357:9990-10009 None:intergenic 25.0%
!! TAAGTTGAACATTAATTCCT+TGG - 43357:9715-9734 None:intergenic 25.0%
!! TTTAAAGTTTCTTGGTTTCT+TGG + 43357:7508-7527 MS.gene41915:intron 25.0%
!!! AATTTTGAGGAGGTTTTTAT+AGG + 43357:9007-9026 MS.gene41915:intron 25.0%
!!! GCATATACCACATTTTTTTT+TGG - 43357:10027-10046 None:intergenic 25.0%
!!! TTTTTGGTCAAGTAACATAA+TGG - 43357:10310-10329 None:intergenic 25.0%
AAAGATGATCTTGGTATCAT+AGG - 43357:10084-10103 None:intergenic 30.0%
AGTGAATTAGCATACTTTCT+TGG + 43357:8852-8871 MS.gene41915:CDS 30.0%
AGTGTTTCACAAACTATATC+AGG + 43357:8894-8913 MS.gene41915:CDS 30.0%
ATACTTTCTTGGTATAACCA+TGG + 43357:8863-8882 MS.gene41915:CDS 30.0%
ATCAAACATAATTACCTCCT+TGG - 43357:9830-9849 None:intergenic 30.0%
CATTGTAACATTACTTTGCT+TGG + 43357:9682-9701 MS.gene41915:intron 30.0%
GAATTTACAATGCTAAGTCT+TGG + 43357:7128-7147 MS.gene41915:CDS 30.0%
GTTAAAATCACGAGTTAACA+TGG - 43357:8367-8386 None:intergenic 30.0%
TATCAGGTAATTACTTTGCT+TGG + 43357:8910-8929 MS.gene41915:intron 30.0%
TCAAGTTCCATATTGAATAG+AGG - 43357:9320-9339 None:intergenic 30.0%
TCACTTTACTTCACTAAAAG+TGG + 43357:9558-9577 MS.gene41915:intron 30.0%
TCATTATTTGTAAGACCAAC+TGG + 43357:9803-9822 MS.gene41915:CDS 30.0%
TGGTAATTTATGTCATTGGT+TGG + 43357:7054-7073 MS.gene41915:CDS 30.0%
TTTAAGCAATTTCAAAGTGC+TGG + 43357:7863-7882 MS.gene41915:intron 30.0%
! ACTTTTAGTGAAGTAAAGTG+AGG - 43357:9559-9578 None:intergenic 30.0%
! ATCTTTTATGGTGAACAAGT+AGG - 43357:9978-9997 None:intergenic 30.0%
! ATGTATCATATCCACACTTT+TGG - 43357:8826-8845 None:intergenic 30.0%
! GCATTGGTAATTTATGTCAT+TGG + 43357:7050-7069 MS.gene41915:CDS 30.0%
! GGTTTTACCTCTATTCAATA+TGG + 43357:9310-9329 MS.gene41915:intron 30.0%
! TATGGTTGGTTACATAAACT+TGG + 43357:9057-9076 MS.gene41915:CDS 30.0%
! TCGTTTTGCTGATATGAAAT+TGG + 43357:8067-8086 MS.gene41915:intron 30.0%
! TCTTTTATGGTGAACAAGTA+GGG - 43357:9977-9996 None:intergenic 30.0%
!!! GCTTTTAGTCTTAATGTTCA+GGG + 43357:7555-7574 MS.gene41915:intron 30.0%
!!! TAGGGCACTTTTTAAAGTAA+TGG + 43357:7788-7807 MS.gene41915:intron 30.0%
!!! TGCTTTTAGTCTTAATGTTC+AGG + 43357:7554-7573 MS.gene41915:intron 30.0%
AAACCCAGGTAAATTGCAAT+TGG - 43357:9106-9125 None:intergenic 35.0%
AACCCAGGTAAATTGCAATT+GGG - 43357:9105-9124 None:intergenic 35.0%
AATGAGTATTTGGATGCTCT+TGG - 43357:8714-8733 None:intergenic 35.0%
ACTTCACTAAAAGTGGTTTC+TGG + 43357:9565-9584 MS.gene41915:intron 35.0%
ACTTCATTCATGATTTAGGG+AGG - 43357:9188-9207 None:intergenic 35.0%
AGCATCCAAATACTCATTCT+TGG + 43357:8716-8735 MS.gene41915:CDS 35.0%
ATATGAACATTGCGATATGC+AGG + 43357:10227-10246 MS.gene41915:intron 35.0%
ATCCAAATACTCATTCTTGG+TGG + 43357:8719-8738 MS.gene41915:CDS 35.0%
ATGGGCATGAACAAAATCAA+AGG + 43357:8220-8239 MS.gene41915:intron 35.0%
ATTGTCTTGGATGGCATTTA+GGG + 43357:7097-7116 MS.gene41915:CDS 35.0%
CAAGGTCTAAAAGATGATCT+TGG - 43357:10093-10112 None:intergenic 35.0%
CATCATCTTTACCAAAAGTG+TGG + 43357:8812-8831 MS.gene41915:CDS 35.0%
CTCTTGGTTCCTATTCAATT+TGG + 43357:7234-7253 MS.gene41915:CDS 35.0%
GATGAATTGAGTCTCAAGTA+AGG - 43357:8392-8411 None:intergenic 35.0%
GATGGCATTTAGGGAATTAT+GGG + 43357:7106-7125 MS.gene41915:CDS 35.0%
GGTGTCCAACGTTTAAATTT+CGG - 43357:9956-9975 None:intergenic 35.0%
GTTTGCATTATTCTTCTTGC+TGG + 43357:7188-7207 MS.gene41915:CDS 35.0%
TCAACTTATCTTGTGGCTTA+GGG + 43357:9727-9746 MS.gene41915:intron 35.0%
TGTCAATCTAAGTACTTGGT+TGG + 43357:7948-7967 MS.gene41915:intron 35.0%
TTAATTCACATGTACACCGT+CGG - 43357:7480-7499 None:intergenic 35.0%
TTCAACTTATCTTGTGGCTT+AGG + 43357:9726-9745 MS.gene41915:intron 35.0%
TTGGAGTAAGTACAGCATTA+AGG + 43357:7598-7617 MS.gene41915:CDS 35.0%
! AGTTTTTGTCTTATGGCATG+AGG - 43357:8486-8505 None:intergenic 35.0%
! CACACTTTTGGTAAAGATGA+TGG - 43357:8814-8833 None:intergenic 35.0%
! GTTTTTATAGGTGTGGTCAT+TGG + 43357:9019-9038 MS.gene41915:intron 35.0%
! GTTTTTGTCTTATGGCATGA+GGG - 43357:8485-8504 None:intergenic 35.0%
! TGGCAAGAGTTTTTGTCTTA+TGG - 43357:8493-8512 None:intergenic 35.0%
! TTAGGTTAGCTCGGTTATTA+GGG + 43357:9907-9926 MS.gene41915:intron 35.0%
! TTTTTGTCTTATGGCATGAG+GGG - 43357:8484-8503 None:intergenic 35.0%
!! TTAGTCTTAATGTTCAGGGT+TGG + 43357:7559-7578 MS.gene41915:intron 35.0%
ACTCCCAATTGCAATTTACC+TGG + 43357:9099-9118 MS.gene41915:CDS 40.0%
ATCTGGTTAGAACAGTGGTA+TGG + 43357:7164-7183 MS.gene41915:CDS 40.0%
ATGCTAAGTCTTGGTTCATC+TGG + 43357:7137-7156 MS.gene41915:CDS 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG + 43357:8744-8763 MS.gene41915:CDS 40.0%
CAATCCATTCCATCCTTCTT+TGG - 43357:7081-7100 None:intergenic 40.0%
CGGTGTAGAGATTATTGACA+CGG - 43357:7460-7479 None:intergenic 40.0%
CTCCCAATTGCAATTTACCT+GGG + 43357:9100-9119 MS.gene41915:CDS 40.0%
GAATGATCTGGTTAGAACAG+TGG + 43357:7159-7178 MS.gene41915:CDS 40.0%
GAGCAATCACAGGATTATCA+AGG - 43357:7217-7236 None:intergenic 40.0%
GATAATCCTGTGATTGCTCT+TGG + 43357:7218-7237 MS.gene41915:CDS 40.0%
GATTGTCTTGGATGGCATTT+AGG + 43357:7096-7115 MS.gene41915:CDS 40.0%
GGATGGCATTTAGGGAATTA+TGG + 43357:7105-7124 MS.gene41915:CDS 40.0%
GTCAATAATCTCTACACCGA+CGG + 43357:7461-7480 MS.gene41915:intron 40.0%
TGAAACACTGTTGAGAACCA+TGG - 43357:8883-8902 None:intergenic 40.0%
TGCCACCAAGAATGAGTATT+TGG - 43357:8724-8743 None:intergenic 40.0%
TGGCAAGTAATATCTCAGGA+TGG + 43357:7015-7034 MS.gene41915:CDS 40.0%
TGGGTTTCAACCAGCATTTA+GGG + 43357:9119-9138 MS.gene41915:CDS 40.0%
! AGTCTATGTTTTCCTCGGTT+AGG + 43357:9889-9908 MS.gene41915:intron 40.0%
! GTTAGGTTAGCTCGGTTATT+AGG + 43357:9906-9925 MS.gene41915:intron 40.0%
! TGAGGAGGTTTTTATAGGTG+TGG + 43357:9012-9031 MS.gene41915:intron 40.0%
! TTGGTTCATCTGGAATGATC+TGG + 43357:7147-7166 MS.gene41915:CDS 40.0%
!! AAGGATGGAATGGATTGTCT+TGG + 43357:7084-7103 MS.gene41915:CDS 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG + 43357:7088-7107 MS.gene41915:CDS 40.0%
AATTACCTCCTTGGTCCAGT+TGG - 43357:9821-9840 None:intergenic 45.0%
ACATTGCGATATGCAGGAGA+TGG + 43357:10233-10252 MS.gene41915:intron 45.0%
ACTTACTCCAAGAAGCAGCA+TGG - 43357:7589-7608 None:intergenic 45.0%
AGGGGCCGAAATTTAAACGT+TGG + 43357:9948-9967 MS.gene41915:intron 45.0%
ATACCTTGACCCCTAAATGC+TGG - 43357:9132-9151 None:intergenic 45.0%
ATAGGTGTGGTCATTGGATG+TGG + 43357:9025-9044 MS.gene41915:intron 45.0%
ATCTTGTGGCTTAGGGTCTT+TGG + 43357:9734-9753 MS.gene41915:intron 45.0%
ATTGCGATATGCAGGAGATG+GGG + 43357:10235-10254 MS.gene41915:intron 45.0%
CAGCAAATCGCATGCAAATC+TGG + 43357:10634-10653 MS.gene41915:CDS 45.0%
CATTGCGATATGCAGGAGAT+GGG + 43357:10234-10253 MS.gene41915:intron 45.0%
CTGGGTTTCAACCAGCATTT+AGG + 43357:9118-9137 MS.gene41915:CDS 45.0%
CTTGCATGAACTCGAGACAA+AGG + 43357:8017-8036 MS.gene41915:intron 45.0%
GGGTTTCAACCAGCATTTAG+GGG + 43357:9120-9139 MS.gene41915:CDS 45.0%
GTTCGTGTCTCTCATACACT+TGG + 43357:8678-8697 MS.gene41915:CDS 45.0%
GTTGAGTATACCTAGACTCG+TGG + 43357:8329-8348 MS.gene41915:intron 45.0%
TAGGAACCAAGAGCAATCAC+AGG - 43357:7227-7246 None:intergenic 45.0%
TCGAGTTCATGCAAGACACA+TGG - 43357:8012-8031 None:intergenic 45.0%
TCTTGTGGCTTAGGGTCTTT+GGG + 43357:9735-9754 MS.gene41915:intron 45.0%
TGGATGTGGATGGCAAGTTA+TGG + 43357:9039-9058 MS.gene41915:CDS 45.0%
TGGTCCAAAGAAGGATGGAA+TGG + 43357:7074-7093 MS.gene41915:CDS 45.0%
TGTGGATGGCAAGTTATGGT+TGG + 43357:9043-9062 MS.gene41915:CDS 45.0%
TTGTAAGACCAACTGGACCA+AGG + 43357:9810-9829 MS.gene41915:CDS 45.0%
! CTAAATGCTGGTTGAAACCC+AGG - 43357:9120-9139 None:intergenic 45.0%
! GTCATTGGTTGGTCCAAAGA+AGG + 43357:7065-7084 MS.gene41915:CDS 45.0%
! TTGGTTGGTCCAAAGAAGGA+TGG + 43357:7069-7088 MS.gene41915:CDS 45.0%
! TTTCCTCGGTTAGGTTAGCT+CGG + 43357:9898-9917 MS.gene41915:intron 45.0%
!! AAAATTCATTATAATTTAAT+AGG + 43357:10337-10356 MS.gene41915:intron 5.0%
!! CTAAAAAAAAAAAAAATATT+AGG + 43357:9417-9436 MS.gene41915:intron 5.0%
!!! TTTTAAAAAAAATAAAAAGA+GGG - 43357:10167-10186 None:intergenic 5.0%
!!! TTTTTAAAAAAAATAAAAAG+AGG - 43357:10168-10187 None:intergenic 5.0%
CAACCAGCATTTAGGGGTCA+AGG + 43357:9126-9145 MS.gene41915:CDS 50.0%
CTTTGCTTGGCAATCGACCA+AGG + 43357:9695-9714 MS.gene41915:intron 50.0%
GTGTGGTCATTGGATGTGGA+TGG + 43357:9029-9048 MS.gene41915:CDS 50.0%
TAACCGAGCTAACCTAACCG+AGG - 43357:9904-9923 None:intergenic 50.0%
TAAGACCAACTGGACCAAGG+AGG + 43357:9813-9832 MS.gene41915:CDS 50.0%
TCGTACGATTCCACGAGTCT+AGG - 43357:8342-8361 None:intergenic 50.0%
! TGGAACTCCATGCTGCTTCT+TGG + 43357:7579-7598 MS.gene41915:CDS 50.0%
GTGGCTTAGGGTCTTTGGGC+AGG + 43357:9739-9758 MS.gene41915:intron 60.0%


Chromosome Type Strat End Strand Name
43357 gene 7014 10671 7014 ID=MS.gene41915
43357 mRNA 7014 10671 7014 ID=MS.gene41915.t1;Parent=MS.gene41915
43357 exon 7014 7255 7014 ID=MS.gene41915.t1.exon1;Parent=MS.gene41915.t1
43357 CDS 7014 7255 7014 ID=cds.MS.gene41915.t1;Parent=MS.gene41915.t1
43357 exon 7563 7619 7563 ID=MS.gene41915.t1.exon2;Parent=MS.gene41915.t1
43357 CDS 7563 7619 7563 ID=cds.MS.gene41915.t1;Parent=MS.gene41915.t1
43357 exon 8677 8915 8677 ID=MS.gene41915.t1.exon3;Parent=MS.gene41915.t1
43357 CDS 8677 8915 8677 ID=cds.MS.gene41915.t1;Parent=MS.gene41915.t1
43357 exon 9029 9147 9029 ID=MS.gene41915.t1.exon4;Parent=MS.gene41915.t1
43357 CDS 9029 9147 9029 ID=cds.MS.gene41915.t1;Parent=MS.gene41915.t1
43357 exon 9748 9834 9748 ID=MS.gene41915.t1.exon5;Parent=MS.gene41915.t1
43357 CDS 9748 9834 9748 ID=cds.MS.gene41915.t1;Parent=MS.gene41915.t1
43357 exon 10624 10671 10624 ID=MS.gene41915.t1.exon6;Parent=MS.gene41915.t1
43357 CDS 10624 10671 10624 ID=cds.MS.gene41915.t1;Parent=MS.gene41915.t1
Gene Sequence

>MS.gene41915

ATGGCAAGTAATATCTCAGGATGGATATTTTCTATTGCATTGGTAATTTATGTCATTGGTTGGTCCAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAATTTACAATGCTAAGTCTTGGTTCATCTGGAATGATCTGGTTAGAACAGTGGTATGGTGTTTGCATTATTCTTCTTGCTGGTCACCTTGATAATCCTGTGATTGCTCTTGGTTCCTATTCAATTTGGTAAGTATAAGTTAATAAATAATTTTCGTTCACTTATATTTACACTTTAACTTTCCAATGTTACTTTTGTATTGAATTTTGTTATATTTTGTGTAAAATATTTTACATTGTCAACAAATCATAATAAATCATATTTGTTTTAAGAATTAATTAAAATTAAAGTCAAAGATTTTTAATGATTTGACAATTATGATTGGTTGACCGTGTCAATAATCTCTACACCGACGGTGTACATGTGAATTAAATTCTAATTTTAAAGTTTCTTGGTTTCTTGGTTTTCTTCATATATTTACTTTTATGCTTTTAGTCTTAATGTTCAGGGTTGGAACTCCATGCTGCTTCTTGGAGTAAGTACAGCATTAAGGTGAGTGACTATAAGTTAAACTAATTAGGAAAATACTAACAATTACATTTAGGGCATTGTTTAAGCAATTTAAAGGAGTAATTTTTACATAAAAAGTTGTGTAATTTTAACTTTTCTATTTGTTTGATTTGCATTTTTTTCAAGATGAAGTTTCTTAAACAATAATCTTAGGGCACTTTTTAAAGTAATGGTATTTATTCTTGTTAGCATAATCATTTTTATTCTTGTATAGCATAATCACTTTTTAAGCAATTTCAAAGTGCTGGTATTTATTCTTGTTAGCATAATCATTTTTATTAATATGTAACAAATGTGCCTTAGAATTTATTGTCAATCTAAGTACTTGGTTGGTGATAGTCTGTAAACATATATTGTAAACACTCATTGAGCCATGTGTCTTGCATGAACTCGAGACAAAGGTTGTCAAAATCGAGAGTTGAAGTGAATTCGTTTTGCTGATATGAAATTGGCTCGTAGTCTCATACGAGTTTACCTCATATTGAAATAACATTAAAACCAATATATACATGACATATATATTTATATAATATTGTAAACATGTCAATATTCAAATTTCCAACTCAGTTATAAAATAAGAAAATGGGCATGAACAAAATCAAAGGAAATTAACTGAATGTAACAAGTTAGATGAGAGAAAAAGATAAAAAATAAAAAAATAAAAAAATAAAAATCCTTCTATAATTTTTTAGTTGAGTATACCTAGACTCGTGGAATCGTACGATGCCATGTTAACTCGTGATTTTAACAACCTTACTTGAGACTCAATTCATCTATAATTTTATTCTTTTAAAGTGACATTAATGATCATTTTACATTATTTTTAAGGAATTTGAATTTCATCCCCTCATGCCATAAGACAAAAACTCTTGCCACTGAATTTACACATCATAATCATAGACACCTACACTTTTTTATCAATAAATAAATAAATTTTAAAATTAAATTAAATCTAAGATGTTGATTTTGATTATATAGTTTTCCATATAATTTTTTCAATGTTCAAACTGACTATATATTGATTCTAATGTCTTGCAAGTGTTCGTGTCTCTCATACACTTGGAATGTCGCATCCAAGAGCATCCAAATACTCATTCTTGGTGGCAATGTCTCAGTCTCTTCTCATTGGAATCATTTTCATGACTGTTATTTTCTTGAGTAAACAAGAATTTGCCATCATCTTTACCAAAAGTGTGGATATGATACATGCTGCTAGTGAATTAGCATACTTTCTTGGTATAACCATGGTTCTCAACAGTGTTTCACAAACTATATCAGGTAATTACTTTGCTTGGTTGACTAGAAAATGTTTAATTTATAACATATAGTCTCATGAGTGCTTGTGATATTACACTATTATTTACATTTTAATTTTGAGGAGGTTTTTATAGGTGTGGTCATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGCATGTTATTACATTATTGGACTCCCAATTGCAATTTACCTGGGTTTCAACCAGCATTTAGGGGTCAAGGTATAACACTAAACTCTTGCTTTAGAAAATAATGTATCCTCCCTAAATCATGAATGAAGTTTCTTATATATTTACCTATATTAAGTGTTTATGTTAACATAATTCATCTTTATAAAATGGACTTCGAAGATGAAGAGTGTTACTCTTTATAAACTATTTTTAGGTTTTACCTCTATTCAATATGGAACTTGAATTTTTCCAATACTTACACTCTATAATGTGTGTGTGTGTGTGTCTATATATATATATATATATATATATGGCCTCTTCTAAAAAAAAAAAAAATATTAGGTCTTATCTCTTTTCAATATATGGATTTGGTTTTTTCCATTAAAAATTATTGGGGTCTTGAGTTAGAACGAGTTAAATTTTTGAAAAGAAAAAAAATTGTTACACAGCATATTTTTACCTCACTTTACTTCACTAAAAGTGGTTTCTGGTTTATCTTGTCACCACTTATCTATTAAAAATTGTTGCGTATATTTTGAATATTTACATTTTTTTGGTGCAAAGAATATTTACATTTAAATTTGTCATTGTAACATTACTTTGCTTGGCAATCGACCAAGGAATTAATGTTCAACTTATCTTGTGGCTTAGGGTCTTTGGGCAGGCACGATATGCGCAAGTATTCTTCAGATTATAGTCCTCACAATCATTATTTGTAAGACCAACTGGACCAAGGAGGTAATTATGTTTGATTATTTTAATTAAAAAATTACAATTTTTAGCATCTAATTAAGTCTATGTTTTCCTCGGTTAGGTTAGCTCGGTTATTAGGGATATAATATAATATATGCAGGGGCCGAAATTTAAACGTTGGACACCCTACTTGTTCACCATAAAAGATGAATTTCTAGTCGCTAGACTACTTAACCAAAAAAAAATGTGGTATATGCCTTGTTAATTATTCTAGCAATGAGTGATTTGTATCCTATGATACCAAGATCATCTTTTAGACCTTGTATTATTTTATTTTTCATAAACCATCAATTTAGTCTTTGAATTATAAGTATCCCTCTTTTTATTTTTTTTAAAAAAAAAACATTATAATTGTCATCCTGATTATAACTCAATTGATATGAACATTGCGATATGCAGGAGATGGGGTTCAAACACCGTATTTTTCAATTATTCACTTTGAGCGCTGAATTTCGAACCATTATGTTACTTGACCAAAAAAACTAAAAAAATTCATTATAATTTAATAGGAACTAAACTTGAAAGCATATGATTTTATAGGGATTAAAAATATATTTTACTTTAGTAAATGTAAATATTTTAGTTTCCTACAACTTGTTTTAATTTAAATCTCTAATATTTGTTAACGTTGATTTTATTCTCTATAATATCTGCATCATAAGAGAACTACTTTCAAATATAAACTATTTGAGTGATATGATAAATCAAATCACTCAAGTTTTGCAGTGCTAAATGATAGTATTTCATAGTGTAATTTATGGAATATGATTGCAGGTAGAGCAAACAGCAAATCGCATGCAAATCTGGATCTCTAACAAGTAA

Protein sequence

>MS.gene41915.t1

MASNISGWIFSIALVIYVIGWSKEGWNGLSWMAFRELWEFTMLSLGSSGMIWLEQWYGVCIILLAGHLDNPVIALGSYSICLNVQGWNSMLLLGVSTALSVRVSHTLGMSHPRASKYSFLVAMSQSLLIGIIFMTVIFLSKQEFAIIFTKSVDMIHAASELAYFLGITMVLNSVSQTISGVVIGCGWQVMVGYINLACYYIIGLPIAIYLGFNQHLGVKGLWAGTICASILQIIVLTIIICKTNWTKEVEQTANRMQIWISNK