Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39496.t1 | XP_024638882.1 | 92.5 | 279 | 7 | 1 | 1 | 265 | 1 | 279 | 9.60E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39496.t1 | A0A396I9U6 | 92.5 | 279 | 7 | 1 | 1 | 265 | 1 | 279 | 6.9e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene39496 | 0.821778 | 3.37E-53 | -1.69E-46 |
| MS.gene049151 | MS.gene39496 | 0.816447 | 5.50E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene39496 | 0.823823 | 1.13E-53 | -1.69E-46 |
| MS.gene049260 | MS.gene39496 | 0.809164 | 2.17E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene39496 | 0.800124 | 1.67E-48 | -1.69E-46 |
| MS.gene049758 | MS.gene39496 | 0.845577 | 3.72E-59 | -1.69E-46 |
| MS.gene049910 | MS.gene39496 | 0.816035 | 6.80E-52 | -1.69E-46 |
| MS.gene049915 | MS.gene39496 | 0.847844 | 8.94E-60 | -1.69E-46 |
| MS.gene050099 | MS.gene39496 | 0.811585 | 6.51E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene39496 | 0.823904 | 1.08E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene39496 | 0.821733 | 3.45E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene39496 | 0.819011 | 1.45E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene39496 | 0.847683 | 9.90E-60 | -1.69E-46 |
| MS.gene050398 | MS.gene39496 | 0.849599 | 2.92E-60 | -1.69E-46 |
| MS.gene050558 | MS.gene39496 | 0.819504 | 1.12E-52 | -1.69E-46 |
| MS.gene050560 | MS.gene39496 | 0.808679 | 2.75E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene39496 | -0.801648 | 8.15E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene39496 | 0.819314 | 1.24E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene39496 | 0.802432 | 5.63E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene39496 | 0.804965 | 1.68E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene39496 | 0.824353 | 8.45E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene39496 | 0.847728 | 9.62E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene39496 | 0.813125 | 3.00E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene39496 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene39496 | 0.814696 | 1.35E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene39496 | 0.820673 | 6.06E-53 | -1.69E-46 |
| MS.gene052207 | MS.gene39496 | 0.805602 | 1.23E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene39496 | 0.81343 | 2.57E-51 | -1.69E-46 |
| MS.gene052255 | MS.gene39496 | 0.845202 | 4.70E-59 | -1.69E-46 |
| MS.gene052340 | MS.gene39496 | 0.835119 | 2.02E-56 | -1.69E-46 |
| MS.gene052600 | MS.gene39496 | 0.805879 | 1.08E-49 | -1.69E-46 |
| MS.gene052967 | MS.gene39496 | 0.801138 | 1.04E-48 | -1.69E-46 |
| MS.gene053074 | MS.gene39496 | 0.830781 | 2.42E-55 | -1.69E-46 |
| MS.gene05316 | MS.gene39496 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene053204 | MS.gene39496 | 0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene053555 | MS.gene39496 | 0.800392 | 1.47E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene39496 | 0.832282 | 1.03E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene39496 | 0.841655 | 4.17E-58 | -1.69E-46 |
| MS.gene053928 | MS.gene39496 | 0.831327 | 1.78E-55 | -1.69E-46 |
| MS.gene054010 | MS.gene39496 | 0.827487 | 1.52E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene39496 | 0.821189 | 4.61E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene39496 | 0.823036 | 1.72E-53 | -1.69E-46 |
| MS.gene054013 | MS.gene39496 | 0.821478 | 3.95E-53 | -1.69E-46 |
| MS.gene054184 | MS.gene39496 | 0.865728 | 4.78E-65 | -1.69E-46 |
| MS.gene054185 | MS.gene39496 | 0.872875 | 2.27E-67 | -1.69E-46 |
| MS.gene054349 | MS.gene39496 | 0.830351 | 3.08E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene39496 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene054542 | MS.gene39496 | 0.803602 | 3.22E-49 | -1.69E-46 |
| MS.gene054596 | MS.gene39496 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene39496 | 0.802401 | 5.71E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene39496 | 0.814006 | 1.92E-51 | -1.69E-46 |
| MS.gene055133 | MS.gene39496 | 0.82842 | 9.08E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene39496 | 0.825824 | 3.80E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene39496 | 0.849063 | 4.11E-60 | -1.69E-46 |
| MS.gene056191 | MS.gene39496 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene056902 | MS.gene39496 | 0.802687 | 4.99E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene39496 | 0.80286 | 4.59E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene39496 | 0.825212 | 5.30E-54 | -1.69E-46 |
| MS.gene057393 | MS.gene39496 | 0.806557 | 7.76E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene39496 | 0.802265 | 6.09E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene39496 | 0.80217 | 6.37E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene39496 | 0.82086 | 5.49E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene39496 | 0.822258 | 2.61E-53 | -1.69E-46 |
| MS.gene057752 | MS.gene39496 | 0.800104 | 1.69E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene39496 | 0.865649 | 5.07E-65 | -1.69E-46 |
| MS.gene057796 | MS.gene39496 | 0.806232 | 9.09E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene39496 | 0.855645 | 5.49E-62 | -1.69E-46 |
| MS.gene05811 | MS.gene39496 | 0.870482 | 1.41E-66 | -1.69E-46 |
| MS.gene058142 | MS.gene39496 | 0.828875 | 7.05E-55 | -1.69E-46 |
| MS.gene058168 | MS.gene39496 | 0.804917 | 1.72E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene39496 | 0.821283 | 4.38E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene39496 | 0.822764 | 1.99E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene39496 | 0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene39496 | 0.844365 | 7.91E-59 | -1.69E-46 |
| MS.gene059124 | MS.gene39496 | 0.86362 | 2.19E-64 | -1.69E-46 |
| MS.gene059285 | MS.gene39496 | 0.802068 | 6.69E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene39496 | 0.833212 | 6.07E-56 | -1.69E-46 |
| MS.gene059421 | MS.gene39496 | 0.838196 | 3.32E-57 | -1.69E-46 |
| MS.gene059518 | MS.gene39496 | 0.837749 | 4.32E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene39496 | 0.802137 | 6.47E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene39496 | 0.800243 | 1.58E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene39496 | 0.856257 | 3.64E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene39496 | 0.802076 | 6.66E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene39496 | 0.800334 | 1.51E-48 | -1.69E-46 |
| MS.gene06037 | MS.gene39496 | 0.828732 | 7.63E-55 | -1.69E-46 |
| MS.gene060476 | MS.gene39496 | 0.824761 | 6.78E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene39496 | 0.845827 | 3.19E-59 | -1.69E-46 |
| MS.gene061085 | MS.gene39496 | 0.808365 | 3.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39496.t1 | MTR_4g088515 | 92.164 | 268 | 7 | 1 | 1 | 254 | 1 | 268 | 1.28e-178 | 505 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39496.t1 | AT4G26415 | 47.727 | 220 | 62 | 9 | 3 | 178 | 7 | 217 | 3.52e-45 | 154 |
Find 59 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTCCTCAAGAACTCTT+TGG | 0.228130 | 4.2:+22656108 | MS.gene39496:CDS |
| TCAATGAATATAGTGGAATA+AGG | 0.272127 | 4.2:+22656377 | MS.gene39496:CDS |
| TGGTGTTGTGGCAAAGTTAA+TGG | 0.280238 | 4.2:+22656633 | MS.gene39496:CDS |
| GCCATTTGAGAGGCATGATT+TGG | 0.298125 | 4.2:+22656753 | MS.gene39496:CDS |
| TCCATGTATAGGTCATCTTT+TGG | 0.313265 | 4.2:+22656493 | MS.gene39496:CDS |
| TCTTATGCCTTTCTTCATCT+TGG | 0.319608 | 4.2:-22656134 | None:intergenic |
| TTTCTCCTCAAGAACTCTTT+GGG | 0.349291 | 4.2:+22656109 | MS.gene39496:CDS |
| AACCAACAAAATAGTACTAT+TGG | 0.366556 | 4.2:+22656193 | MS.gene39496:CDS |
| TGGATATTGTATTATGAAAC+CGG | 0.367697 | 4.2:+22656858 | MS.gene39496:CDS |
| GGATGAGTAGTGTTGATTGT+AGG | 0.385703 | 4.2:+22656710 | MS.gene39496:CDS |
| CAATGAATATAGTGGAATAA+GGG | 0.392950 | 4.2:+22656378 | MS.gene39496:CDS |
| AGAACCAAAGCTTGATGAAA+AGG | 0.407802 | 4.2:+22656558 | MS.gene39496:CDS |
| GCCATAGCTTCTAGAGAAAC+CGG | 0.424661 | 4.2:-22656877 | None:intergenic |
| GGTGTTGTGGCAAAGTTAAT+GGG | 0.432813 | 4.2:+22656634 | MS.gene39496:CDS |
| TGTGGCAAAGTTAATGGGTT+TGG | 0.433784 | 4.2:+22656639 | MS.gene39496:CDS |
| TCTTATACTACAATTAGAAA+TGG | 0.443850 | 4.2:+22656327 | MS.gene39496:CDS |
| CTCCTTGGTTGCCAACTACT+AGG | 0.453422 | 4.2:-22656907 | None:intergenic |
| GTTAGAAGAAGAAATAGGTC+TGG | 0.472977 | 4.2:+22656820 | MS.gene39496:CDS |
| AGTATAAGATCTTCTAATGT+TGG | 0.477524 | 4.2:-22656313 | None:intergenic |
| TCCAAATCATGCCTCTCAAA+TGG | 0.478781 | 4.2:-22656754 | None:intergenic |
| TGCTGCTTGTGATGTCAACT+TGG | 0.485632 | 4.2:-22656237 | None:intergenic |
| AGTACTATTGGCAATGGCAT+TGG | 0.489373 | 4.2:+22656205 | MS.gene39496:CDS |
| AAAACTAGCAATGGACATGC+AGG | 0.491726 | 4.2:+22656780 | MS.gene39496:CDS |
| CCCAAAAGATGACCTATACA+TGG | 0.498041 | 4.2:-22656494 | None:intergenic |
| CTAATCTAAACATATCTCCT+TGG | 0.500292 | 4.2:-22656922 | None:intergenic |
| TTGTGATGTCAACTTGGCTA+TGG | 0.503039 | 4.2:-22656231 | None:intergenic |
| TTCTCCCCAGCAACTGTTGG+TGG | 0.503702 | 4.2:-22656592 | None:intergenic |
| GTAGGAGACAAAATATAAGA+AGG | 0.511223 | 4.2:+22656728 | MS.gene39496:CDS |
| ATGGAAGAGATTCCATGTAT+AGG | 0.512387 | 4.2:+22656482 | MS.gene39496:CDS |
| ATTAACTTTGCCACAACACC+AGG | 0.513967 | 4.2:-22656631 | None:intergenic |
| TGGCAGGAGGTCCTAGTAGT+TGG | 0.521625 | 4.2:+22656896 | MS.gene39496:CDS |
| ACCGGTTTCTCTAGAAGCTA+TGG | 0.522607 | 4.2:+22656876 | MS.gene39496:CDS |
| TTGCTGGGGAGAACGTGGTT+TGG | 0.527912 | 4.2:+22656602 | MS.gene39496:CDS |
| ACATTGTTAGAAGAAGAAAT+AGG | 0.529346 | 4.2:+22656815 | MS.gene39496:CDS |
| ATGCTTTGAATCAATATCCA+AGG | 0.531501 | 4.2:+22656449 | MS.gene39496:CDS |
| AAATGGAGGAAGAGATGGCA+AGG | 0.533678 | 4.2:+22656344 | MS.gene39496:CDS |
| ATTAGAAATGGAGGAAGAGA+TGG | 0.541356 | 4.2:+22656339 | MS.gene39496:CDS |
| GAGTTCTTGAGGAGAAAGAA+TGG | 0.549925 | 4.2:-22656103 | None:intergenic |
| TTGGGAGCCAAGATGAAGAA+AGG | 0.561593 | 4.2:+22656127 | MS.gene39496:CDS |
| CAAAATAGTACTATTGGCAA+TGG | 0.563916 | 4.2:+22656199 | MS.gene39496:CDS |
| CTTCCATCAAGTGAAAACCT+TGG | 0.575355 | 4.2:-22656466 | None:intergenic |
| GTCCTAGTAGTTGGCAACCA+AGG | 0.577078 | 4.2:+22656905 | MS.gene39496:CDS |
| AATGAATATAGTGGAATAAG+GGG | 0.579962 | 4.2:+22656379 | MS.gene39496:CDS |
| TATACTACAATTAGAAATGG+AGG | 0.596710 | 4.2:+22656330 | MS.gene39496:CDS |
| TGGCTCCCAAAGAGTTCTTG+AGG | 0.597986 | 4.2:-22656114 | None:intergenic |
| GAAGCTATTCCAGTGTCAGT+AGG | 0.605402 | 4.2:+22656661 | MS.gene39496:CDS |
| TTTGGAGAGAAAACTAGCAA+TGG | 0.605568 | 4.2:+22656771 | MS.gene39496:CDS |
| AACGTGGTTTGGTGTAAACC+TGG | 0.608504 | 4.2:+22656613 | MS.gene39496:CDS |
| GTTTCTCTAGAAGCTATGGC+AGG | 0.610709 | 4.2:+22656880 | MS.gene39496:CDS |
| AACAGTTGCTGGGGAGAACG+TGG | 0.612915 | 4.2:+22656597 | MS.gene39496:CDS |
| AATATAGTGGAATAAGGGGA+AGG | 0.620558 | 4.2:+22656383 | MS.gene39496:CDS |
| GGAGACAAAATATAAGAAGG+AGG | 0.626425 | 4.2:+22656731 | MS.gene39496:CDS |
| TAAGAAGGAGGCCATTTGAG+AGG | 0.627512 | 4.2:+22656743 | MS.gene39496:CDS |
| CTGACATATTAAGATCTGCA+AGG | 0.639107 | 4.2:+22656425 | MS.gene39496:CDS |
| AGTTGACATCACAAGCAGCA+AGG | 0.656859 | 4.2:+22656240 | MS.gene39496:CDS |
| ACGTTCTCCCCAGCAACTGT+TGG | 0.657823 | 4.2:-22656595 | None:intergenic |
| TCTCTAGAAGCTATGGCAGG+AGG | 0.665560 | 4.2:+22656883 | MS.gene39496:CDS |
| TTGGTGTAAACCTGGTGTTG+TGG | 0.669247 | 4.2:+22656621 | MS.gene39496:CDS |
| AAACTAGCAATGGACATGCA+GGG | 0.676573 | 4.2:+22656781 | MS.gene39496:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTATACTACAATTAGAAA+TGG | + | chr4.2:22656327-22656346 | MS.gene39496:CDS | 20.0% |
| ! | AACCAACAAAATAGTACTAT+TGG | + | chr4.2:22656193-22656212 | MS.gene39496:CDS | 25.0% |
| ! | ACATTGTTAGAAGAAGAAAT+AGG | + | chr4.2:22656815-22656834 | MS.gene39496:CDS | 25.0% |
| ! | AGTATAAGATCTTCTAATGT+TGG | - | chr4.2:22656316-22656335 | None:intergenic | 25.0% |
| ! | GAAAAACTCAATGAATATAG+TGG | + | chr4.2:22656370-22656389 | MS.gene39496:CDS | 25.0% |
| ! | TATACTACAATTAGAAATGG+AGG | + | chr4.2:22656330-22656349 | MS.gene39496:CDS | 25.0% |
| ! | TGGATATTGTATTATGAAAC+CGG | + | chr4.2:22656858-22656877 | MS.gene39496:CDS | 25.0% |
| !! | AATGAATATAGTGGAATAAG+GGG | + | chr4.2:22656379-22656398 | MS.gene39496:CDS | 25.0% |
| !! | CAATGAATATAGTGGAATAA+GGG | + | chr4.2:22656378-22656397 | MS.gene39496:CDS | 25.0% |
| !! | TCAATGAATATAGTGGAATA+AGG | + | chr4.2:22656377-22656396 | MS.gene39496:CDS | 25.0% |
| AAAGATCTGACAAAAAAGAG+AGG | + | chr4.2:22656689-22656708 | MS.gene39496:CDS | 30.0% | |
| AGTTGTCACATTGCAAAAAA+GGG | - | chr4.2:22656273-22656292 | None:intergenic | 30.0% | |
| CAAAATAGTACTATTGGCAA+TGG | + | chr4.2:22656199-22656218 | MS.gene39496:CDS | 30.0% | |
| GTAGGAGACAAAATATAAGA+AGG | + | chr4.2:22656728-22656747 | MS.gene39496:CDS | 30.0% | |
| ! | ATAACCTTTTCATCAAGCTT+TGG | - | chr4.2:22656565-22656584 | None:intergenic | 30.0% |
| ! | ATGCTTTGAATCAATATCCA+AGG | + | chr4.2:22656449-22656468 | MS.gene39496:CDS | 30.0% |
| ! | TGCCAATAGTACTATTTTGT+TGG | - | chr4.2:22656198-22656217 | None:intergenic | 30.0% |
| !!! | ATTTTGTTGGTTTAGAGTTG+AGG | - | chr4.2:22656185-22656204 | None:intergenic | 30.0% |
| !!! | TCTGGTTTTTGCTCTAAAAA+TGG | + | chr4.2:22656838-22656857 | MS.gene39496:CDS | 30.0% |
| AGAACCAAAGCTTGATGAAA+AGG | + | chr4.2:22656558-22656577 | MS.gene39496:CDS | 35.0% | |
| ATGGAAGAGATTCCATGTAT+AGG | + | chr4.2:22656482-22656501 | MS.gene39496:CDS | 35.0% | |
| ATTAGAAATGGAGGAAGAGA+TGG | + | chr4.2:22656339-22656358 | MS.gene39496:CDS | 35.0% | |
| CTGACATATTAAGATCTGCA+AGG | + | chr4.2:22656425-22656444 | MS.gene39496:CDS | 35.0% | |
| GAGTTGTCACATTGCAAAAA+AGG | - | chr4.2:22656274-22656293 | None:intergenic | 35.0% | |
| GGAGACAAAATATAAGAAGG+AGG | + | chr4.2:22656731-22656750 | MS.gene39496:CDS | 35.0% | |
| GTTAGAAGAAGAAATAGGTC+TGG | + | chr4.2:22656820-22656839 | MS.gene39496:CDS | 35.0% | |
| GTTGTCACATTGCAAAAAAG+GGG | - | chr4.2:22656272-22656291 | None:intergenic | 35.0% | |
| TCTTATGCCTTTCTTCATCT+TGG | - | chr4.2:22656137-22656156 | None:intergenic | 35.0% | |
| TTTCTCCTCAAGAACTCTTT+GGG | + | chr4.2:22656109-22656128 | MS.gene39496:CDS | 35.0% | |
| TTTGGAGAGAAAACTAGCAA+TGG | + | chr4.2:22656771-22656790 | MS.gene39496:CDS | 35.0% | |
| ! | AATATAGTGGAATAAGGGGA+AGG | + | chr4.2:22656383-22656402 | MS.gene39496:CDS | 35.0% |
| ! | CCATGTATAGGTCATCTTTT+GGG | + | chr4.2:22656494-22656513 | MS.gene39496:CDS | 35.0% |
| ! | TATCCAAGGTTTTCACTTGA+TGG | + | chr4.2:22656463-22656482 | MS.gene39496:CDS | 35.0% |
| ! | TCCATGTATAGGTCATCTTT+TGG | + | chr4.2:22656493-22656512 | MS.gene39496:CDS | 35.0% |
| !!! | TCATCTTTTGGGACTATAGA+AGG | + | chr4.2:22656505-22656524 | MS.gene39496:CDS | 35.0% |
| AAAACTAGCAATGGACATGC+AGG | + | chr4.2:22656780-22656799 | MS.gene39496:CDS | 40.0% | |
| AAACTAGCAATGGACATGCA+GGG | + | chr4.2:22656781-22656800 | MS.gene39496:CDS | 40.0% | |
| AGTACTATTGGCAATGGCAT+TGG | + | chr4.2:22656205-22656224 | MS.gene39496:CDS | 40.0% | |
| ATTAACTTTGCCACAACACC+AGG | - | chr4.2:22656634-22656653 | None:intergenic | 40.0% | |
| CCCAAAAGATGACCTATACA+TGG | - | chr4.2:22656497-22656516 | None:intergenic | 40.0% | |
| CTTCCATCAAGTGAAAACCT+TGG | - | chr4.2:22656469-22656488 | None:intergenic | 40.0% | |
| CTTTCTCCTCAAGAACTCTT+TGG | + | chr4.2:22656108-22656127 | MS.gene39496:CDS | 40.0% | |
| GAGTTCTTGAGGAGAAAGAA+TGG | - | chr4.2:22656106-22656125 | None:intergenic | 40.0% | |
| TCCAAATCATGCCTCTCAAA+TGG | - | chr4.2:22656757-22656776 | None:intergenic | 40.0% | |
| TTGTGATGTCAACTTGGCTA+TGG | - | chr4.2:22656234-22656253 | None:intergenic | 40.0% | |
| ! | CTTTTTCTACCTACTGACAC+TGG | - | chr4.2:22656673-22656692 | None:intergenic | 40.0% |
| ! | GGTGTTGTGGCAAAGTTAAT+GGG | + | chr4.2:22656634-22656653 | MS.gene39496:CDS | 40.0% |
| !! | GGATGAGTAGTGTTGATTGT+AGG | + | chr4.2:22656710-22656729 | MS.gene39496:CDS | 40.0% |
| !! | TGGTGTTGTGGCAAAGTTAA+TGG | + | chr4.2:22656633-22656652 | MS.gene39496:CDS | 40.0% |
| !! | TGTGGCAAAGTTAATGGGTT+TGG | + | chr4.2:22656639-22656658 | MS.gene39496:CDS | 40.0% |
| AAATGGAGGAAGAGATGGCA+AGG | + | chr4.2:22656344-22656363 | MS.gene39496:CDS | 45.0% | |
| AGTTGACATCACAAGCAGCA+AGG | + | chr4.2:22656240-22656259 | MS.gene39496:CDS | 45.0% | |
| GAAGCTATTCCAGTGTCAGT+AGG | + | chr4.2:22656661-22656680 | MS.gene39496:CDS | 45.0% | |
| TAAGAAGGAGGCCATTTGAG+AGG | + | chr4.2:22656743-22656762 | MS.gene39496:CDS | 45.0% | |
| TTGGGAGCCAAGATGAAGAA+AGG | + | chr4.2:22656127-22656146 | MS.gene39496:CDS | 45.0% | |
| ! | ACCGGTTTCTCTAGAAGCTA+TGG | + | chr4.2:22656876-22656895 | MS.gene39496:CDS | 45.0% |
| ! | GCCATAGCTTCTAGAGAAAC+CGG | - | chr4.2:22656880-22656899 | None:intergenic | 45.0% |
| ! | GCCATTTGAGAGGCATGATT+TGG | + | chr4.2:22656753-22656772 | MS.gene39496:CDS | 45.0% |
| ! | GTTTCTCTAGAAGCTATGGC+AGG | + | chr4.2:22656880-22656899 | MS.gene39496:CDS | 45.0% |
| ! | GTTTTCCACCAACAGTTGCT+GGG | + | chr4.2:22656587-22656606 | MS.gene39496:CDS | 45.0% |
| ! | TGCTGCTTGTGATGTCAACT+TGG | - | chr4.2:22656240-22656259 | None:intergenic | 45.0% |
| ! | TGTTTTCCACCAACAGTTGC+TGG | + | chr4.2:22656586-22656605 | MS.gene39496:CDS | 45.0% |
| ! | TTGGTGTAAACCTGGTGTTG+TGG | + | chr4.2:22656621-22656640 | MS.gene39496:CDS | 45.0% |
| ! | TTTTCCACCAACAGTTGCTG+GGG | + | chr4.2:22656588-22656607 | MS.gene39496:CDS | 45.0% |
| !! | AACGTGGTTTGGTGTAAACC+TGG | + | chr4.2:22656613-22656632 | MS.gene39496:CDS | 45.0% |
| CTCCTTGGTTGCCAACTACT+AGG | - | chr4.2:22656910-22656929 | None:intergenic | 50.0% | |
| GTCCTAGTAGTTGGCAACCA+AGG | + | chr4.2:22656905-22656924 | MS.gene39496:CDS | 50.0% | |
| TGGCTCCCAAAGAGTTCTTG+AGG | - | chr4.2:22656117-22656136 | None:intergenic | 50.0% | |
| ! | TCTCTAGAAGCTATGGCAGG+AGG | + | chr4.2:22656883-22656902 | MS.gene39496:CDS | 50.0% |
| AACAGTTGCTGGGGAGAACG+TGG | + | chr4.2:22656597-22656616 | MS.gene39496:CDS | 55.0% | |
| ACGTTCTCCCCAGCAACTGT+TGG | - | chr4.2:22656598-22656617 | None:intergenic | 55.0% | |
| TGGCAGGAGGTCCTAGTAGT+TGG | + | chr4.2:22656896-22656915 | MS.gene39496:CDS | 55.0% | |
| TTCTCCCCAGCAACTGTTGG+TGG | - | chr4.2:22656595-22656614 | None:intergenic | 55.0% | |
| TTGCTGGGGAGAACGTGGTT+TGG | + | chr4.2:22656602-22656621 | MS.gene39496:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 22656100 | 22656939 | 22656100 | ID=MS.gene39496 |
| chr4.2 | mRNA | 22656100 | 22656939 | 22656100 | ID=MS.gene39496.t1;Parent=MS.gene39496 |
| chr4.2 | exon | 22656100 | 22656261 | 22656100 | ID=MS.gene39496.t1.exon1;Parent=MS.gene39496.t1 |
| chr4.2 | CDS | 22656100 | 22656261 | 22656100 | ID=cds.MS.gene39496.t1;Parent=MS.gene39496.t1 |
| chr4.2 | exon | 22656304 | 22656939 | 22656304 | ID=MS.gene39496.t1.exon2;Parent=MS.gene39496.t1 |
| chr4.2 | CDS | 22656304 | 22656939 | 22656304 | ID=cds.MS.gene39496.t1;Parent=MS.gene39496.t1 |
| Gene Sequence |
| Protein sequence |
