AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80997


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80997.t1 MTR_7g006540 99.708 342 1 0 1 342 1 342 0.0 712
MS.gene80997.t1 MTR_7g067010 42.138 318 170 7 38 354 1 305 2.81e-75 243
MS.gene80997.t1 MTR_4g015080 42.617 298 159 6 44 341 17 302 1.12e-73 239
MS.gene80997.t1 MTR_3g462710 44.643 280 146 3 63 342 24 294 1.57e-73 238
MS.gene80997.t1 MTR_3g112470 39.726 292 168 3 51 342 12 295 2.23e-64 214
MS.gene80997.t1 MTR_7g098180 37.500 312 190 4 31 342 1 307 7.98e-64 213
MS.gene80997.t1 MTR_3g112460 38.947 285 167 2 58 342 18 295 6.97e-63 210
MS.gene80997.t1 MTR_7g098150 37.097 310 188 6 34 342 5 308 5.73e-62 206
MS.gene80997.t1 MTR_7g098220 38.762 307 182 5 44 350 13 313 1.66e-61 207
MS.gene80997.t1 MTR_7g098090 39.560 273 159 5 34 305 5 272 1.22e-59 202
MS.gene80997.t1 MTR_3g112450 38.014 292 175 2 51 342 12 297 1.22e-59 202
MS.gene80997.t1 MTR_1g075440 37.542 301 179 6 44 342 11 304 2.17e-59 201
MS.gene80997.t1 MTR_7g098200 37.209 301 183 5 42 342 10 304 3.00e-59 201
MS.gene80997.t1 MTR_1g041815 37.329 292 177 4 51 342 16 301 3.07e-59 201
MS.gene80997.t1 MTR_7g098160 38.462 273 162 5 34 305 5 272 2.26e-58 199
MS.gene80997.t1 MTR_7g098200 37.931 290 174 5 42 331 10 293 1.88e-57 196
MS.gene80997.t1 MTR_3g072300 35.621 306 185 5 38 342 1 295 9.30e-57 194
MS.gene80997.t1 MTR_1g041835 36.301 292 180 4 51 342 16 301 1.02e-56 194
MS.gene80997.t1 MTR_5g055000 35.517 290 178 3 63 351 18 299 3.16e-56 193
MS.gene80997.t1 MTR_7g088825 36.986 292 174 4 54 342 10 294 6.03e-56 192
MS.gene80997.t1 MTR_1g041875 35.644 303 188 5 40 342 8 303 6.43e-56 192
MS.gene80997.t1 MTR_1g042310 35.786 299 185 5 44 342 9 300 1.24e-55 191
MS.gene80997.t1 MTR_4g101380 38.436 307 172 5 48 342 2 303 1.36e-55 191
MS.gene80997.t1 MTR_7g098040 36.452 310 190 6 34 342 6 309 1.52e-55 192
MS.gene80997.t1 MTR_7g098230 38.828 273 163 3 70 342 33 301 3.86e-55 190
MS.gene80997.t1 MTR_5g012270 36.458 288 164 5 62 342 28 303 1.36e-54 188
MS.gene80997.t1 MTR_7g098220 37.729 273 166 3 78 350 1 269 4.66e-54 186
MS.gene80997.t1 MTR_7g065080 35.294 289 176 4 54 342 22 299 1.96e-53 185
MS.gene80997.t1 MTR_3g069500 35.587 281 169 5 62 342 34 302 3.35e-53 184
MS.gene80997.t1 MTR_5g012290 40.484 289 156 3 60 342 24 302 4.03e-52 182
MS.gene80997.t1 MTR_3g069420 34.752 282 170 6 62 342 33 301 1.24e-51 181
MS.gene80997.t1 MTR_4g019580 35.294 289 176 4 54 342 27 304 2.39e-51 180
MS.gene80997.t1 MTR_1g042310 35.361 263 165 3 80 342 6 263 1.54e-50 177
MS.gene80997.t1 MTR_5g038060 36.897 290 172 4 54 341 27 307 1.23e-49 176
MS.gene80997.t1 MTR_1g041885 36.398 261 161 3 82 342 1 256 5.61e-49 172
MS.gene80997.t1 MTR_1g042310 34.866 261 165 3 82 342 1 256 7.39e-49 172
MS.gene80997.t1 MTR_7g088790 34.948 289 181 3 63 351 29 310 7.61e-48 171
MS.gene80997.t1 MTR_3g069440 33.808 281 174 6 62 342 32 300 1.27e-46 167
MS.gene80997.t1 MTR_7g005930 35.135 296 174 6 52 342 25 307 2.63e-46 166
MS.gene80997.t1 MTR_1g116930 35.915 284 168 5 62 342 22 294 3.16e-46 166
MS.gene80997.t1 MTR_4g114340 37.102 283 165 3 60 342 21 290 2.96e-45 163
MS.gene80997.t1 MTR_7g088820 32.143 280 183 3 63 342 25 297 3.78e-45 163
MS.gene80997.t1 MTR_5g014150 34.752 282 176 4 62 342 43 317 6.37e-45 162
MS.gene80997.t1 MTR_7g010820 34.875 281 175 3 62 342 25 297 1.03e-44 162
MS.gene80997.t1 MTR_4g107530 32.759 290 185 5 66 353 36 317 1.05e-44 162
MS.gene80997.t1 MTR_7g111260 35.000 280 169 4 63 342 19 285 1.16e-44 162
MS.gene80997.t1 MTR_5g085850 37.324 284 163 3 60 341 27 297 8.10e-44 159
MS.gene80997.t1 MTR_8g469480 33.813 278 178 3 66 341 41 314 1.51e-43 159
MS.gene80997.t1 MTR_3g462710 43.814 194 100 3 149 342 1 185 3.50e-43 155
MS.gene80997.t1 MTR_4g098800 33.108 296 183 6 51 342 25 309 9.19e-43 156
MS.gene80997.t1 MTR_4g107610 34.507 284 170 7 63 342 31 302 1.29e-42 156
MS.gene80997.t1 MTR_4g098800 33.108 296 183 6 51 342 90 374 2.08e-42 156
MS.gene80997.t1 MTR_7g013270 35.192 287 167 6 63 342 90 364 3.91e-42 155
MS.gene80997.t1 MTR_4g107510 31.488 289 186 6 66 351 39 318 3.44e-41 152
MS.gene80997.t1 MTR_1g085090 32.500 280 175 4 63 342 19 284 5.28e-41 152
MS.gene80997.t1 MTR_3g100980 32.624 282 183 5 63 342 16 292 1.74e-40 150
MS.gene80997.t1 MTR_2g017750 32.028 281 186 3 63 342 34 310 6.95e-40 149
MS.gene80997.t1 MTR_8g087810 33.803 284 177 5 63 342 21 297 2.92e-39 147
MS.gene80997.t1 MTR_7g088820 33.195 241 154 3 102 342 2 235 7.83e-39 145
MS.gene80997.t1 MTR_4g033375 30.888 259 155 3 62 315 31 270 1.04e-38 144
MS.gene80997.t1 MTR_4g033395 31.641 256 157 3 62 315 31 270 1.21e-38 144
MS.gene80997.t1 MTR_4g107580 30.928 291 191 3 66 354 27 309 2.84e-38 144
MS.gene80997.t1 MTR_2g101590 34.495 287 163 8 63 342 26 294 1.29e-37 142
MS.gene80997.t1 MTR_7g065080 36.652 221 129 4 122 342 3 212 1.59e-37 140
MS.gene80997.t1 MTR_2g101610 34.965 286 159 9 65 342 29 295 2.86e-37 142
MS.gene80997.t1 MTR_8g038880 36.585 246 132 2 62 307 19 240 5.78e-37 140
MS.gene80997.t1 MTR_8g469470 29.893 281 190 3 63 341 32 307 1.84e-36 139
MS.gene80997.t1 MTR_1g009200 31.095 283 179 3 63 342 27 296 2.72e-36 139
MS.gene80997.t1 MTR_4g033325 32.422 256 155 3 62 315 30 269 3.23e-36 138
MS.gene80997.t1 MTR_5g038190 33.065 248 164 1 59 306 20 265 4.47e-36 138
MS.gene80997.t1 MTR_8g087780 31.250 288 179 5 63 342 21 297 6.41e-36 137
MS.gene80997.t1 MTR_4g033315 31.765 255 156 4 62 314 30 268 6.59e-36 137
MS.gene80997.t1 MTR_4g033310 31.765 255 156 4 62 314 30 268 6.59e-36 137
MS.gene80997.t1 MTR_3g100980 29.677 310 183 6 63 342 16 320 6.51e-35 135
MS.gene80997.t1 MTR_3g014790 34.008 247 137 3 62 307 16 237 2.48e-34 133
MS.gene80997.t1 MTR_5g038380 33.456 272 168 3 31 302 3 261 3.07e-34 132
MS.gene80997.t1 MTR_3g005010 33.865 251 143 3 62 309 29 259 3.18e-34 132
MS.gene80997.t1 MTR_1g026740 29.474 285 188 4 58 342 12 283 4.38e-34 132
MS.gene80997.t1 MTR_7g064800 29.412 306 205 5 51 351 14 313 5.12e-34 132
MS.gene80997.t1 MTR_4g107670 31.338 284 169 5 34 309 2 267 1.18e-33 131
MS.gene80997.t1 MTR_4g033330 30.272 294 178 5 63 354 31 299 1.21e-33 130
MS.gene80997.t1 MTR_0294s0020 31.250 256 158 3 62 315 30 269 2.41e-33 130
MS.gene80997.t1 MTR_8g469310 32.423 293 179 5 63 342 26 312 3.86e-33 129
MS.gene80997.t1 MTR_7g064780 28.852 305 208 4 50 351 13 311 4.20e-33 129
MS.gene80997.t1 MTR_7g098200 39.759 166 99 1 177 342 26 190 1.41e-32 127
MS.gene80997.t1 MTR_2g005130 29.831 295 188 5 48 342 26 301 1.49e-32 128
MS.gene80997.t1 MTR_4g123537 31.579 304 191 8 42 341 18 308 2.88e-32 127
MS.gene80997.t1 MTR_7g051880 33.071 254 155 4 60 313 22 260 2.64e-31 124
MS.gene80997.t1 MTR_2g101650 28.435 313 206 8 46 354 7 305 7.09e-30 120
MS.gene80997.t1 MTR_1g026750 28.425 292 192 5 65 354 20 296 8.86e-30 120
MS.gene80997.t1 MTR_1g026770 29.010 293 191 7 65 355 17 294 9.92e-30 120
MS.gene80997.t1 MTR_7g088820 37.349 166 103 1 177 342 23 187 1.17e-29 119
MS.gene80997.t1 MTR_8g103233 32.534 292 161 7 63 342 17 284 3.28e-29 118
MS.gene80997.t1 MTR_7g052600 33.778 225 134 3 89 313 51 260 3.98e-29 118
MS.gene80997.t1 MTR_7g051830 33.333 225 135 3 89 313 51 260 5.03e-29 117
MS.gene80997.t1 MTR_2g101640 33.597 253 147 8 63 307 23 262 6.48e-29 118
MS.gene80997.t1 MTR_2g101560 33.333 285 165 8 65 342 29 295 2.91e-27 113
MS.gene80997.t1 MTR_4g011280 30.952 294 168 8 61 342 30 300 3.98e-27 112
MS.gene80997.t1 MTR_1g057460 27.915 283 174 7 65 342 46 303 3.49e-25 107
MS.gene80997.t1 MTR_4g033310 35.359 181 100 4 62 242 30 193 3.45e-24 103
MS.gene80997.t1 MTR_4g024930 30.814 172 114 2 62 233 35 201 2.89e-23 101
MS.gene80997.t1 MTR_1g057460 26.038 265 170 6 95 354 1 244 2.11e-21 95.5
MS.gene80997.t1 MTR_0236s0050 26.749 243 156 5 113 354 23 244 7.92e-21 94.0
MS.gene80997.t1 MTR_4g033325 29.814 161 99 2 157 315 23 171 6.28e-19 88.2
MS.gene80997.t1 MTR_1g009170 32.903 155 94 2 191 342 5 152 1.22e-18 86.7
MS.gene80997.t1 MTR_4g033385 32.143 140 91 2 178 315 32 169 1.29e-18 87.0
MS.gene80997.t1 MTR_4g033325 32.331 133 88 1 185 315 13 145 1.55e-18 86.7
MS.gene80997.t1 MTR_2g093640 25.794 252 178 2 56 307 14 256 1.77e-17 84.0
MS.gene80997.t1 MTR_2g093160 27.236 246 170 3 62 307 20 256 9.49e-17 81.6
MS.gene80997.t1 MTR_2g093180 30.081 246 163 5 62 307 20 256 1.86e-16 80.9
MS.gene80997.t1 MTR_7g098210 25.954 262 125 8 82 342 1 194 2.07e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80997.t1 AT5G13400 78.592 341 72 1 1 340 1 341 0.0 562
MS.gene80997.t1 AT3G54140 43.144 299 159 5 44 342 7 294 1.28e-77 249
MS.gene80997.t1 AT3G54140 43.144 299 159 5 44 342 7 294 1.28e-77 249
MS.gene80997.t1 AT1G62200 40.836 311 178 3 32 342 22 326 2.62e-72 235
MS.gene80997.t1 AT1G62200 40.645 310 178 3 32 341 22 325 3.18e-71 233
MS.gene80997.t1 AT1G62200 40.645 310 178 3 32 341 36 339 3.20e-71 234
MS.gene80997.t1 AT5G01180 41.806 299 162 5 44 342 8 294 5.71e-71 231
MS.gene80997.t1 AT5G01180 41.806 299 162 5 44 342 8 294 5.71e-71 231
MS.gene80997.t1 AT5G01180 41.806 299 162 5 44 342 8 294 5.71e-71 231
MS.gene80997.t1 AT2G02040 41.637 281 154 3 63 342 41 312 8.03e-71 231
MS.gene80997.t1 AT2G02020 42.353 255 139 3 51 305 31 277 1.02e-61 206
MS.gene80997.t1 AT2G02020 42.353 255 139 3 51 305 31 277 1.56e-61 206
MS.gene80997.t1 AT5G46040 37.299 311 188 5 40 350 6 309 2.19e-59 201
MS.gene80997.t1 AT2G37900 36.242 298 169 6 45 342 29 305 1.73e-57 196
MS.gene80997.t1 AT5G46050 34.983 303 190 4 40 342 6 301 1.50e-55 191
MS.gene80997.t1 AT2G40460 35.621 306 185 5 38 342 1 295 2.05e-55 191
MS.gene80997.t1 AT1G12110 39.860 286 162 4 60 341 24 303 1.75e-53 186
MS.gene80997.t1 AT2G26690 38.516 283 161 5 60 342 21 290 9.74e-53 183
MS.gene80997.t1 AT3G53960 37.500 264 145 5 45 307 28 272 4.82e-52 182
MS.gene80997.t1 AT1G68570 36.237 287 176 2 65 351 25 304 2.70e-51 180
MS.gene80997.t1 AT1G68570 35.379 277 172 2 75 351 5 274 6.70e-48 170
MS.gene80997.t1 AT3G21670 39.841 251 149 1 60 310 26 274 8.90e-48 170
MS.gene80997.t1 AT2G26690 36.567 268 157 4 75 342 3 257 1.22e-45 164
MS.gene80997.t1 AT2G37900 38.197 233 132 5 110 342 6 226 2.61e-44 159
MS.gene80997.t1 AT3G54450 31.560 282 168 2 65 342 14 274 4.92e-44 159
MS.gene80997.t1 AT4G21680 34.164 281 176 3 62 342 27 298 2.22e-43 158
MS.gene80997.t1 AT2G26690 36.576 257 150 4 86 342 2 245 1.91e-42 155
MS.gene80997.t1 AT1G32450 32.484 314 183 9 41 342 17 313 6.65e-41 152
MS.gene80997.t1 AT5G19640 34.589 292 173 7 64 351 60 337 2.10e-40 150
MS.gene80997.t1 AT1G69870 32.558 301 191 6 44 341 33 324 3.63e-40 150
MS.gene80997.t1 AT1G27080 31.164 292 191 4 53 342 4 287 1.07e-38 145
MS.gene80997.t1 AT1G52190 34.586 266 165 5 50 310 5 266 1.53e-38 145
MS.gene80997.t1 AT1G72120 36.111 252 145 3 62 309 28 267 1.72e-38 144
MS.gene80997.t1 AT1G18880 30.690 290 192 2 66 355 22 302 3.28e-38 144
MS.gene80997.t1 AT1G22570 33.588 262 157 3 62 315 29 281 3.37e-38 144
MS.gene80997.t1 AT1G59740 31.673 281 187 2 62 342 40 315 5.42e-38 143
MS.gene80997.t1 AT1G72125 33.829 269 160 5 62 326 28 282 2.16e-37 141
MS.gene80997.t1 AT1G69860 32.095 296 188 5 52 342 3 290 2.16e-37 141
MS.gene80997.t1 AT1G69850 33.214 280 179 3 63 341 25 297 3.54e-36 138
MS.gene80997.t1 AT5G28470 33.202 253 160 4 63 313 17 262 4.07e-36 138
MS.gene80997.t1 AT5G28470 33.202 253 160 4 63 313 17 262 4.33e-36 138
MS.gene80997.t1 AT3G16180 32.143 280 178 4 65 342 25 294 4.35e-36 138
MS.gene80997.t1 AT1G33440 32.069 290 187 4 62 351 37 316 1.82e-35 136
MS.gene80997.t1 AT3G25260 30.357 280 172 4 63 342 21 277 3.68e-35 134
MS.gene80997.t1 AT1G22540 34.800 250 152 5 62 309 29 269 6.89e-35 134
MS.gene80997.t1 AT5G62680 29.552 335 222 6 21 351 1 325 7.33e-35 135
MS.gene80997.t1 AT1G22550 33.333 261 156 4 62 313 29 280 1.76e-33 130
MS.gene80997.t1 AT5G62730 29.643 280 166 3 34 309 34 286 1.32e-32 128
MS.gene80997.t1 AT3G45710 32.061 262 162 5 56 314 14 262 1.53e-32 128
MS.gene80997.t1 AT1G22570 32.000 250 153 3 74 315 4 244 1.62e-32 127
MS.gene80997.t1 AT5G46050 33.862 189 124 1 154 342 2 189 3.62e-32 125
MS.gene80997.t1 AT3G25280 29.921 254 163 2 63 316 21 259 1.88e-31 124
MS.gene80997.t1 AT3G47960 29.592 294 190 4 66 355 64 344 2.43e-31 125
MS.gene80997.t1 AT5G62730 31.301 246 145 3 68 309 2 227 7.84e-31 122
MS.gene80997.t1 AT1G27040 32.917 240 157 2 63 302 27 262 6.23e-30 120
MS.gene80997.t1 AT1G27040 32.917 240 157 2 63 302 23 258 6.46e-30 120
MS.gene80997.t1 AT1G72140 28.906 256 165 3 62 309 33 279 1.21e-29 119
MS.gene80997.t1 AT3G45690 33.203 256 155 6 62 314 17 259 1.38e-29 119
MS.gene80997.t1 AT1G72130 32.400 250 151 4 62 308 24 258 6.51e-29 117
MS.gene80997.t1 AT1G27080 30.769 247 161 4 98 342 7 245 7.86e-29 117
MS.gene80997.t1 AT3G45680 31.741 293 181 8 62 351 19 295 1.61e-28 116
MS.gene80997.t1 AT3G45700 32.530 249 152 5 62 307 15 250 2.36e-28 115
MS.gene80997.t1 AT1G27040 32.743 226 148 2 77 302 9 230 1.10e-26 111
MS.gene80997.t1 AT5G11570 31.489 235 144 6 72 298 22 247 9.75e-25 105
MS.gene80997.t1 AT3G45720 30.924 249 154 6 63 307 19 253 5.66e-23 100
MS.gene80997.t1 AT3G45650 26.190 252 176 4 63 314 22 263 3.52e-22 98.2
MS.gene80997.t1 AT3G45650 26.400 250 174 4 65 314 24 263 4.44e-22 97.8
MS.gene80997.t1 AT3G45660 27.953 254 169 7 63 314 21 262 2.03e-21 95.9
MS.gene80997.t1 AT3G45660 27.953 254 169 7 63 314 21 262 2.03e-21 95.9
MS.gene80997.t1 AT3G45660 27.953 254 169 7 63 314 42 283 2.94e-21 95.5
MS.gene80997.t1 AT5G14940 25.106 235 144 4 80 299 24 241 1.67e-16 81.3
MS.gene80997.t1 AT3G01350 25.676 222 135 4 80 289 24 227 1.93e-16 80.9
MS.gene80997.t1 AT1G72130 31.496 127 84 1 185 308 14 140 2.74e-12 67.8
MS.gene80997.t1 AT1G72130 31.496 127 84 1 185 308 14 140 2.74e-12 67.8

Find 0 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATTATGATTATGAAAA+TGG - 50634:10868-10887 MS.gene80997:CDS 15.0%
!! AGAATGCATTAAAATATATT+AGG - 50634:10816-10835 MS.gene80997:CDS 15.0%
!!! CAATTTATTTTAATCTTTGT+TGG - 50634:12286-12305 MS.gene80997:intron 15.0%
!! ATACATACCAAATATAAAGA+AGG + 50634:10663-10682 None:intergenic 20.0%
!! CAAAGTTATTATGATATATC+TGG + 50634:11808-11827 None:intergenic 20.0%
!! TATAACTAGAAATGTTACAT+TGG - 50634:11375-11394 MS.gene80997:intron 20.0%
!! TTAAGAGTGAATAAATAGAT+TGG - 50634:11229-11248 MS.gene80997:CDS 20.0%
!!! AATGGTATTTTACAATTTTG+TGG + 50634:11314-11333 None:intergenic 20.0%
!!! CTAATTTTCCTATGAAATTT+AGG + 50634:11533-11552 None:intergenic 20.0%
!!! TTATTTTCTTAAGTTGCTAA+TGG - 50634:12159-12178 MS.gene80997:CDS 20.0%
!!! TTTCATAGGAAAATTAGTTT+AGG - 50634:11536-11555 MS.gene80997:intron 20.0%
! AATGCAGTCAATAATTTCTT+AGG - 50634:11047-11066 MS.gene80997:intron 25.0%
! ATGCATCACATAAAACATAA+AGG + 50634:11006-11025 None:intergenic 25.0%
! ATTCTATCATATTTCTCAAC+AGG - 50634:12309-12328 MS.gene80997:intron 25.0%
! GTCTATGTTCAAATGAAATT+GGG - 50634:12471-12490 MS.gene80997:intron 25.0%
! TTCCTAATAGAAGTGATAAT+TGG + 50634:11925-11944 None:intergenic 25.0%
! TTGCTAATTCACAAAAATGA+GGG + 50634:11285-11304 None:intergenic 25.0%
! TTTGCTAATTCACAAAAATG+AGG + 50634:11286-11305 None:intergenic 25.0%
!! ATTCCAAACTTTTATGAACA+GGG - 50634:11836-11855 MS.gene80997:intron 25.0%
!! GATTTTCCATGAATATTAAC+AGG + 50634:10602-10621 None:intergenic 25.0%
!! TAAGAAATTATTGACTGCAT+TGG + 50634:11048-11067 None:intergenic 25.0%
!! TCTAACATGCTTTTCTTTAT+TGG - 50634:12537-12556 MS.gene80997:intron 25.0%
!!! ATGTTTTTGAGGTAAAAGAT+AGG - 50634:10750-10769 MS.gene80997:CDS 25.0%
!!! GATTTTTTTTGTTGCTTCTA+TGG - 50634:10914-10933 MS.gene80997:intron 25.0%
!!! TAGTATATGTCATGTTTTTG+AGG - 50634:10739-10758 MS.gene80997:CDS 25.0%
AAATGAAATGGCAGAAAGAA+TGG - 50634:10950-10969 MS.gene80997:intron 30.0%
AACATATCAACAACTTCGAA+TGG + 50634:11332-11351 None:intergenic 30.0%
ATCTTACGATATGTGTATGT+TGG - 50634:10694-10713 MS.gene80997:CDS 30.0%
ATGAGTGACCTAAATTTCAT+AGG - 50634:11522-11541 MS.gene80997:intron 30.0%
ATGTTCAAATGAAATTGGGT+TGG - 50634:12475-12494 MS.gene80997:intron 30.0%
ATTGCTGCCTTCTTTATATT+TGG - 50634:10653-10672 MS.gene80997:CDS 30.0%
CAAACTATGAAGAATTGACA+CGG + 50634:12220-12239 None:intergenic 30.0%
CGAAAGAGAAAAGAATCATT+TGG - 50634:12636-12655 MS.gene80997:CDS 30.0%
GACCAATTATCACTTCTATT+AGG - 50634:11920-11939 MS.gene80997:intron 30.0%
GGTCTATGTTCAAATGAAAT+TGG - 50634:12470-12489 MS.gene80997:intron 30.0%
GTTCTATACATAACAGCATT+TGG - 50634:11989-12008 MS.gene80997:intron 30.0%
TAGGATAAGATCTGAATTCT+TGG - 50634:10769-10788 MS.gene80997:CDS 30.0%
TATTCATGGAAAATCCATTG+AGG - 50634:10607-10626 MS.gene80997:CDS 30.0%
TCTACACCTGTTAATATTCA+TGG - 50634:10593-10612 MS.gene80997:CDS 30.0%
TGCTAATTCACAAAAATGAG+GGG + 50634:11284-11303 None:intergenic 30.0%
TGTTCAAATGAAATTGGGTT+GGG - 50634:12476-12495 MS.gene80997:intron 30.0%
TTATGTATAGAACAGTGTAG+AGG + 50634:11982-12001 None:intergenic 30.0%
TTCATAGACAAATTAGTCCT+TGG + 50634:11429-11448 None:intergenic 30.0%
TTCTATCTTTCTGTGACAAT+TGG - 50634:12423-12442 MS.gene80997:intron 30.0%
TTTGTTTCGACTTAGTGAAT+AGG + 50634:11760-11779 None:intergenic 30.0%
! AGTATGTAGTTTTTGCGAAT+TGG + 50634:11700-11719 None:intergenic 30.0%
! ATAATTGGTCACAGTTTTCT+TGG + 50634:11910-11929 None:intergenic 30.0%
! CATTCCAAACTTTTATGAAC+AGG - 50634:11835-11854 MS.gene80997:intron 30.0%
! TTCTTTTCTCTTTCGATAAG+CGG + 50634:12631-12650 None:intergenic 30.0%
! TTGGTAATAGTGAAGTTGTT+GGG - 50634:12655-12674 MS.gene80997:CDS 30.0%
! TTTGGTAATAGTGAAGTTGT+TGG - 50634:12654-12673 MS.gene80997:CDS 30.0%
! TTTTGGACTTTCTGTTAACA+TGG - 50634:10977-10996 MS.gene80997:intron 30.0%
!! ATTGAGGATCTTTCTAAAAC+TGG - 50634:10623-10642 MS.gene80997:CDS 30.0%
!!! AGTTTTAGAAAGATCCTCAA+TGG + 50634:10624-10643 None:intergenic 30.0%
!!! TTGATAGAGACTATTTTGAC+CGG - 50634:11647-11666 MS.gene80997:intron 30.0%
!!! TTTTTTTGTTGCTTCTATGG+TGG - 50634:10917-10936 MS.gene80997:intron 30.0%
AAGCCCTGTTCATAAAAGTT+TGG + 50634:11842-11861 None:intergenic 35.0%
ACATCAATGTTAACTCTCCA+AGG - 50634:11409-11428 MS.gene80997:intron 35.0%
CTTCACTACAATTTATCTCG+CGG - 50634:11145-11164 MS.gene80997:intron 35.0%
GACTTAGTGAATAGGCAAAT+TGG + 50634:11752-11771 None:intergenic 35.0%
GGTAGAAGATCTGCTATAAA+GGG - 50634:12693-12712 MS.gene80997:CDS 35.0%
GTACACCTTTGTATAGACAT+AGG - 50634:12559-12578 MS.gene80997:intron 35.0%
TCAATGAGCAGAAAGAAACT+TGG - 50634:10509-10528 MS.gene80997:CDS 35.0%
TGAATAGGCAAATTGGTTGT+AGG + 50634:11745-11764 None:intergenic 35.0%
TGGTAGAAGATCTGCTATAA+AGG - 50634:12692-12711 MS.gene80997:CDS 35.0%
TGTCACATCATAGTCTCTAA+AGG - 50634:11618-11637 MS.gene80997:intron 35.0%
TGTTAGATATAGCTGGTGAT+TGG - 50634:12024-12043 MS.gene80997:intron 35.0%
TTGCTCATACTGATGATTTC+AGG - 50634:12727-12746 MS.gene80997:CDS 35.0%
TTGGAGAGTTAACATTGATG+TGG + 50634:11410-11429 None:intergenic 35.0%
TTTATAGCAGATCTTCTACC+AGG + 50634:12693-12712 None:intergenic 35.0%
! AGACCATGTGTATCTTCTTT+TGG - 50634:12336-12355 MS.gene80997:intron 35.0%
! CAGGTATTGTTAGATATAGC+TGG - 50634:12017-12036 MS.gene80997:intron 35.0%
! CATTTTCTTCATTGAGTCTG+AGG - 50634:10532-10551 MS.gene80997:CDS 35.0%
! GCAGAAAGAATGGCTTATTT+TGG - 50634:10960-10979 MS.gene80997:intron 35.0%
! GTTCAAATGAAATTGGGTTG+GGG - 50634:12477-12496 MS.gene80997:intron 35.0%
! TGAAGTGTTATGACATGTGT+CGG + 50634:12133-12152 None:intergenic 35.0%
! TTTTATGAACAGGGCTTAAC+TGG - 50634:11845-11864 MS.gene80997:intron 35.0%
! TTTTGCTTCTTTCGTCGAAT+TGG + 50634:12368-12387 None:intergenic 35.0%
!! ATCTTTCTAAAACTGGTGGT+TGG - 50634:10630-10649 MS.gene80997:CDS 35.0%
!! TCTCTGAAACTGTAAAGTAC+CGG + 50634:11669-11688 None:intergenic 35.0%
AATTGTAGCATTCACAGCAG+TGG - 50634:12449-12468 MS.gene80997:intron 40.0%
ACATTGATGCTAGATCAACG+TGG - 50634:11566-11585 MS.gene80997:intron 40.0%
ATCTGACAGCTCAAATCGAA+AGG + 50634:11183-11202 None:intergenic 40.0%
CCAAACTCAGCAAACAAACA+TGG + 50634:10842-10861 None:intergenic 40.0%
CTACAATTTATCTCGCGGTA+TGG - 50634:11150-11169 MS.gene80997:intron 40.0%
GACATCGGACACAATACTAA+CGG + 50634:12198-12217 None:intergenic 40.0%
GCATTGGATGAACTTGCAAA+AGG + 50634:11032-11051 None:intergenic 40.0%
GCTCCAAAAGAAGATACACA+TGG + 50634:12342-12361 None:intergenic 40.0%
GGCAACCTATGTCTATACAA+AGG + 50634:12567-12586 None:intergenic 40.0%
GGTTACTGCAGGAAATGAAA+TGG - 50634:10938-10957 MS.gene80997:intron 40.0%
GGTTCATTGGCAATAGCAAT+GGG - 50634:12510-12529 MS.gene80997:intron 40.0%
TCACAAGCTTCTTCTGTTCT+TGG - 50634:11074-11093 MS.gene80997:intron 40.0%
TCATTGAGTCTGAGGATAGA+AGG - 50634:10540-10559 MS.gene80997:CDS 40.0%
TGAAGAATTGACACGGACAT+CGG + 50634:12213-12232 None:intergenic 40.0%
TGGTTCATTGGCAATAGCAA+TGG - 50634:12509-12528 MS.gene80997:intron 40.0%
TTGTATAGACATAGGTTGCC+AGG - 50634:12567-12586 MS.gene80997:intron 40.0%
TTTCTGCTCATTGAAGTGCA+TGG + 50634:10503-10522 None:intergenic 40.0%
! AGGATAGAAGGATGGCTTTA+GGG - 50634:10552-10571 MS.gene80997:CDS 40.0%
! CCATGTTTGTTTGCTGAGTT+TGG - 50634:10839-10858 MS.gene80997:CDS 40.0%
! TAGAGGTATGTCATTTGCCA+TGG + 50634:11965-11984 None:intergenic 40.0%
! TGAAGTTGTTGGGTTGTATG+AGG - 50634:12665-12684 MS.gene80997:CDS 40.0%
! TGGTCACAGTTTTCTTGGTT+TGG + 50634:11905-11924 None:intergenic 40.0%
!! GAGGATCTTTCTAAAACTGG+TGG - 50634:10626-10645 MS.gene80997:CDS 40.0%
!! TTTCTAGCTGATGCATACCT+TGG - 50634:11101-11120 MS.gene80997:intron 40.0%
ATGCATACCTTGGACGTTAC+TGG - 50634:11111-11130 MS.gene80997:intron 45.0%
ATGCTAGATCAACGTGGTTG+AGG - 50634:11572-11591 MS.gene80997:intron 45.0%
CAAGCTTCTTCTGTTCTTGG+TGG - 50634:11077-11096 MS.gene80997:intron 45.0%
CTATTGTCCAGTAACGTCCA+AGG + 50634:11121-11140 None:intergenic 45.0%
CTGACATTTCTTTCCCGTGT+TGG - 50634:12087-12106 MS.gene80997:CDS 45.0%
GAGGATAGAAGGATGGCTTT+AGG - 50634:10551-10570 MS.gene80997:CDS 45.0%
TACACGAGTCGCTCAAGTAT+TGG - 50634:12602-12621 MS.gene80997:CDS 45.0%
TATAGACATAGGTTGCCAGG+TGG - 50634:12570-12589 MS.gene80997:intron 45.0%
TGAGTCTGAGGATAGAAGGA+TGG - 50634:10544-10563 MS.gene80997:CDS 45.0%
TTAGGGCGTGGTTATACAAG+AGG - 50634:10569-10588 MS.gene80997:CDS 45.0%
TTGGAGCTGAGTAGTTAGCA+AGG + 50634:12766-12785 None:intergenic 45.0%
! ATAACAGCATTTGGAGCTGC+AGG - 50634:11998-12017 MS.gene80997:intron 45.0%
!! GTCATTTGCCATGGTTTTGC+AGG + 50634:11956-11975 None:intergenic 45.0%
!!! GGGTTCTGCTTTTGGTTCAT+TGG - 50634:12497-12516 MS.gene80997:intron 45.0%
ACTGTGAGCCTGCAAAACCA+TGG - 50634:11945-11964 MS.gene80997:intron 50.0%
ACTTGAGCGACTCGTGTAAG+AGG + 50634:12600-12619 None:intergenic 50.0%
CACCAGAAGCTCCTCAACAA+GGG - 50634:10474-10493 MS.gene80997:CDS 50.0%
GCTTCTATGGTGGTTACTGC+AGG - 50634:10927-10946 MS.gene80997:intron 50.0%
TCACCAGAAGCTCCTCAACA+AGG - 50634:10473-10492 MS.gene80997:CDS 50.0%
TGTCGGCATCATGTCGATGT+CGG + 50634:12116-12135 None:intergenic 50.0%
! GTTGGGTTGTATGAGGTTCC+TGG - 50634:12672-12691 MS.gene80997:CDS 50.0%
!!! TTGGGTTGGGGTTCTGCTTT+TGG - 50634:12489-12508 MS.gene80997:intron 50.0%
CGTGTAAGAGGACTTCCACC+TGG + 50634:12588-12607 None:intergenic 55.0%
GTCCCTTGTTGAGGAGCTTC+TGG + 50634:10479-10498 None:intergenic 55.0%
GTCGATGTCGGACACCAACA+CGG + 50634:12104-12123 None:intergenic 55.0%
GTGCATGGTGTCCCTTGTTG+AGG + 50634:10488-10507 None:intergenic 55.0%
TCGATGTCGGACACCAACAC+GGG + 50634:12103-12122 None:intergenic 55.0%
!! AGAAGGATGGCTTTAGGGCG+TGG - 50634:10557-10576 MS.gene80997:CDS 55.0%


Chromosome Type Strat End Strand Name
50634 gene 10452 12794 10452 ID=MS.gene80997
50634 mRNA 10452 12794 10452 ID=MS.gene80997.t1;Parent=MS.gene80997
50634 exon 12572 12794 12572 ID=MS.gene80997.t1.exon1;Parent=MS.gene80997.t1
50634 CDS 12572 12794 12572 ID=cds.MS.gene80997.t1;Parent=MS.gene80997.t1
50634 exon 12080 12297 12080 ID=MS.gene80997.t1.exon2;Parent=MS.gene80997.t1
50634 CDS 12080 12297 12080 ID=cds.MS.gene80997.t1;Parent=MS.gene80997.t1
50634 exon 11227 11389 11227 ID=MS.gene80997.t1.exon3;Parent=MS.gene80997.t1
50634 CDS 11227 11389 11227 ID=cds.MS.gene80997.t1;Parent=MS.gene80997.t1
50634 exon 10452 10915 10452 ID=MS.gene80997.t1.exon4;Parent=MS.gene80997.t1
50634 CDS 10452 10915 10452 ID=cds.MS.gene80997.t1;Parent=MS.gene80997.t1
Gene Sequence

>MS.gene80997

ATGGATACTTGTGAGATCAAGTCACCAGAAGCTCCTCAACAAGGGACACCATGCACTTCAATGAGCAGAAAGAAACTTGGCATTTTCTTCATTGAGTCTGAGGATAGAAGGATGGCTTTAGGGCGTGGTTATACAAGAGGTTCTACACCTGTTAATATTCATGGAAAATCCATTGAGGATCTTTCTAAAACTGGTGGTTGGATTGCTGCCTTCTTTATATTTGGTATGTATATTCTTCACATATCTTACGATATGTGTATGTTGGAATGTCTTTTATATCATGACATTAGTATATGTCATGTTTTTGAGGTAAAAGATAGGATAAGATCTGAATTCTTGGTTAATATGATGCTTGTGACAAATGAGAATGCATTAAAATATATTAGGCCATGTTTGTTTGCTGAGTTTGGTTATTAACTTATTATGATTATGAAAATGGTGAATACTTTAAAGATAATGTATGATTTTTTTTGTTGCTTCTATGGTGGTTACTGCAGGAAATGAAATGGCAGAAAGAATGGCTTATTTTGGACTTTCTGTTAACATGGTAGCCTTTATGTTTTATGTGATGCATAGACCTTTTGCAAGTTCATCCAATGCAGTCAATAATTTCTTAGGAATATCACAAGCTTCTTCTGTTCTTGGTGGATTTCTAGCTGATGCATACCTTGGACGTTACTGGACAATAGCTATCTTCACTACAATTTATCTCGCGGTATGGTTCATCACCTTTCGATTTGAGCTGTCAGATCAAGATTGAATGTCTAAAGTTTCGACTTAAGAGTGAATAAATAGATTGGTTTAAAATTGTAAGTACTTGTCAAAGTAACCCCTCATTTTTGTGAATTAGCAAATACATCCACAAAATTGTAAAATACCATTCGAAGTTGTTGATATGTTGACTTCTATAGTTAGACTTAATTTATAACTAGAAATGTTACATTGGATGCTGATTCCACATCAATGTTAACTCTCCAAGGACTAATTTGTCTATGAAATTTAGTTCATCTTATAGACAAATTTATCAGTAATTGCAATTGTGCGTAGACTAATTACTGACAATTTAGTCAATGAGTGACCTAAATTTCATAGGAAAATTAGTTTAGGTGTGTTGACATTGATGCTAGATCAACGTGGTTGAGGATGAGACGAATATTTAGTAAACATGTCACATCATAGTCTCTAAAGGTAAAAGTTGATAGAGACTATTTTGACCGGTACTTTACAGTTTCAGAGAAGTATTTGCCAATTCGCAAAAACTACATACTATTTTGATCGCTGCTTACAATTCCTACAACCAATTTGCCTATTCACTAAGTCGAAACAAAGACTGTCTAATCTTGATCTGATAATCCAGATATATCATAATAACTTTGTTACTTTCATTCCAAACTTTTATGAACAGGGCTTAACTGGAATAACAATATGTGCAACAATGAGCATTTTTGTGCCAAACCAAGAAAACTGTGACCAATTATCACTTCTATTAGGAAACTGTGAGCCTGCAAAACCATGGCAAATGACATACCTCTACACTGTTCTATACATAACAGCATTTGGAGCTGCAGGTATTGTTAGATATAGCTGGTGATTGGAGTTTATTATTGATTTGAGTTTCATATAATATATGTAGCACTGACATTTCTTTCCCGTGTTGGTGTCCGACATCGACATGATGCCGACACATGTCATAACACTTCAATTGATTTATTTTCTTAAGTTGCTAATGGTGTAAACATGTCACCGTTAGTATTGTGTCCGATGTCCGTGTCAATTCTTCATAGTTTGTAATCAACTTTTTCAATCTATCAATTTCAAAGTCAATCTTTCTGATCAATTTATTTTAATCTTTGTTGGATTCTATCATATTTCTCAACAGGTATAAGACCATGTGTATCTTCTTTTGGAGCAGACCAATTCGACGAAAGAAGCAAAAACTACAAATCACATCTTGACAGATTTTTCAACTTGTTCTATCTTTCTGTGACAATTGGTGCAATTGTAGCATTCACAGCAGTGGTCTATGTTCAAATGAAATTGGGTTGGGGTTCTGCTTTTGGTTCATTGGCAATAGCAATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGAATCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCATACTGATGATTTCAGGTTTGAGTCTTTTTCCTTGCTAACTACTCAGCTCCAAAAGTTTTGA

Protein sequence

>MS.gene80997.t1

MDTCEIKSPEAPQQGTPCTSMSRKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSIEDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIVAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFESFSLLTTQLQKF