AlfalfaGEDB | MS.gene96190

M. sativa cultivar XinJiangDaYe / MS.gene96190

KEGG: K20780
GO: -
PFAM: PF16770.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96190.t1	XP_003594019.1	95.4	1156	51	2	1	1155	1	1155	0.00E+00	2067.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96190.t1	A0JNA8	36.1	183	113	2	947	1125	799	981	5.9e-25	118.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96190.t1	G7ISL3	95.4	1156	51	2	1	1155	1	1155	0.0e+00	2067.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene96190	0.892047	2.27E-74	-1.69E-46
MS.gene04918	MS.gene96190	0.836066	1.16E-56	-1.69E-46
MS.gene049300	MS.gene96190	0.831607	1.52E-55	-1.69E-46
MS.gene049350	MS.gene96190	0.862494	4.87E-64	-1.69E-46
MS.gene049368	MS.gene96190	0.869275	3.50E-66	-1.69E-46
MS.gene049411	MS.gene96190	0.821236	4.49E-53	-1.69E-46
MS.gene049499	MS.gene96190	0.804952	1.69E-49	-1.69E-46
MS.gene049711	MS.gene96190	0.839344	1.68E-57	-1.69E-46
MS.gene049807	MS.gene96190	0.856567	2.95E-62	-1.69E-46
MS.gene049850	MS.gene96190	0.803759	2.99E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96190.t1	MTR_2g020440	96.886	1156	34	2	1	1155	1	1155	0.0	2309
MS.gene96190.t1	MTR_2g020440	96.620	1065	34	2	1	1064	1	1064	0.0	2116
MS.gene96190.t1	MTR_7g107650	54.671	289	117	4	865	1152	674	949	2.22e-91	315
MS.gene96190.t1	MTR_3g113850	48.507	268	101	4	865	1132	177	407	5.04e-70	242
MS.gene96190.t1	MTR_7g090680	26.020	196	138	2	930	1123	449	639	1.77e-13	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96190.t1	AT3G21480	59.000	300	114	1	849	1148	746	1036	1.85e-111	373
MS.gene96190.t1	AT3G21480	34.981	263	114	7	226	483	253	463	1.10e-25	115
MS.gene96190.t1	AT4G03130	50.562	267	117	4	867	1131	506	759	1.50e-73	261
MS.gene96190.t1	AT4G03130	27.111	225	123	5	272	483	156	352	1.22e-11	69.7
MS.gene96190.t1	AT4G03130	50.562	267	117	4	867	1131	510	763	1.83e-73	261
MS.gene96190.t1	AT4G03130	27.111	225	123	5	272	483	160	356	1.33e-11	69.7
MS.gene96190.t1	AT4G03130	49.254	201	90	3	867	1065	510	700	3.30e-50	191
MS.gene96190.t1	AT4G03130	27.111	225	123	5	272	483	160	356	1.13e-11	69.7
MS.gene96190.t1	AT4G03130	49.162	179	79	3	867	1043	510	678	4.94e-42	165
MS.gene96190.t1	AT4G03130	27.111	225	123	5	272	483	160	356	1.28e-11	69.3

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Find 233 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAATGTAGAAATTGA+GGG	0.538750	2.2:-64684430	MS.gene96190:CDS
AAATCATCGTTACTGAGAGA+AGG	0.570419	2.2:+64684322	None:intergenic
AAATCGATTCTTTGAAGATA+CGG	0.483512	2.2:-64685929	MS.gene96190:CDS
AAATTGATCTGTTATGAAAT+GGG	0.496480	2.2:+64682078	None:intergenic
AACAGACTGAGATTTATGAC+TGG	0.563127	2.2:-64684039	MS.gene96190:CDS
AACAGGCGATGCATTGTTCA+CGG	0.527463	2.2:+64682467	None:intergenic
AACATACAGGAAAGTATGAC+AGG	0.522547	2.2:-64683487	MS.gene96190:CDS
AACATCATCCTCGCGATCCA+CGG	0.521685	2.2:+64685702	None:intergenic
AACCACGAGGATGAAAGCGG+GGG	0.685604	2.2:-64684010	MS.gene96190:CDS
AACCACTTCCTTGCATAAAA+GGG	0.493070	2.2:-64684105	MS.gene96190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTACCTAAAACAGTGA+AGG	-	chr2.2:64681345-64681364	MS.gene96190:intron	30.0%
AAATTGATGCAAAACTTCGA+AGG	-	chr2.2:64685035-64685054	MS.gene96190:intron	30.0%
AACCAAGTCTTTATACCATT+GGG	+	chr2.2:64684714-64684733	None:intergenic	30.0%
AAGGAATATTGCTGATGAAT+TGG	-	chr2.2:64682626-64682645	MS.gene96190:CDS	30.0%
AATAAAGGAGAATCCTTTCT+TGG	-	chr2.2:64681877-64681896	MS.gene96190:intron	30.0%
AATCAAGTATCCCAGTTAAA+AGG	-	chr2.2:64682514-64682533	MS.gene96190:CDS	30.0%
AATCTCAAAAGTAATGATGG+AGG	-	chr2.2:64683155-64683174	MS.gene96190:CDS	30.0%
ACAACTATAGAAAGAGAGTT+GGG	-	chr2.2:64680986-64681005	MS.gene96190:intron	30.0%
ACATGTATGTATTTGCACAT+AGG	+	chr2.2:64684190-64684209	None:intergenic	30.0%
ACTAAACTATTGATGCTAGA+GGG	+	chr2.2:64684797-64684816	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	64680249	64686152	64680249	ID=MS.gene96190
chr2.2	mRNA	64680249	64686152	64680249	ID=MS.gene96190.t1;Parent=MS.gene96190
chr2.2	exon	64686071	64686152	64686071	ID=MS.gene96190.t1.exon1;Parent=MS.gene96190.t1
chr2.2	CDS	64686071	64686152	64686071	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1
chr2.2	exon	64685653	64685973	64685653	ID=MS.gene96190.t1.exon2;Parent=MS.gene96190.t1
chr2.2	CDS	64685653	64685973	64685653	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1
chr2.2	exon	64682239	64684676	64682239	ID=MS.gene96190.t1.exon3;Parent=MS.gene96190.t1
chr2.2	CDS	64682239	64684676	64682239	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1
chr2.2	exon	64681880	64682149	64681880	ID=MS.gene96190.t1.exon4;Parent=MS.gene96190.t1
chr2.2	CDS	64681880	64682149	64681880	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1
chr2.2	exon	64681177	64681257	64681177	ID=MS.gene96190.t1.exon5;Parent=MS.gene96190.t1
chr2.2	CDS	64681177	64681257	64681177	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1
chr2.2	exon	64680729	64680840	64680729	ID=MS.gene96190.t1.exon6;Parent=MS.gene96190.t1
chr2.2	CDS	64680729	64680840	64680729	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1
chr2.2	exon	64680587	64680653	64680587	ID=MS.gene96190.t1.exon7;Parent=MS.gene96190.t1
chr2.2	CDS	64680587	64680653	64680587	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1
chr2.2	exon	64680249	64680345	64680249	ID=MS.gene96190.t1.exon8;Parent=MS.gene96190.t1
chr2.2	CDS	64680249	64680345	64680249	ID=cds.MS.gene96190.t1;Parent=MS.gene96190.t1

Gene Sequence

>MS.gene96190

ATGGCGAAAGACGAAGAACATCGAATTCACACAAACACTTCTGACACTCAACCATTCGATGACGATTCCTCTTCTCACTCAAGTAATTCTCTTTCTCTCTCTACGGTTCTTCGATCTATCTTTTAACCTAATTCTTCAATTTTACTTCAATTTTTGTTTTTTAACTGATTTAATCTTAGGTCAATACGAGGATGACAAAGAAAATCGATTCTTTGAAGATACGGTGCCGTTTGATGACGATGAAACTCAGGCGGTGGATCTTGGCGATGAAACTGAAGTGTTAGATGATATTGCCGGTGAGACTCAGAAGTTTGATGATTTTGATACAGAGTTGTTGGTTGAAGGGTATGAATCTGATGGAACTGAGGTTTTGGAGGATATGGATGATGAGGGTGTTGATGATCATCAATGCAGGGACAGTGGTGGGTCCGTGGATCGCGAGGATGATGTTAATCGATCGATTAATGAGCGTAGTGGTGACGAGAAACACACTTCTTCTGGTAATTGATTACTTTTTTAACTCTCACTGGTAACTGTTAAGTTTGTATGTGAATCAAGTTTTTAAGCTTTTATGACTTTTGCCTTAAAAAAATAATTTTTAGTTGGTTTCCTTAAAGTTAATGATGAGACAGAGTGTTGGGCAGTGAAGAACAAACACTAGAATAAATAAAATGTAGCATAGATGAGGATGTTGCGTTGAATGTGTGGCATGACTAGATGAGTTATGATTATAAATGACAACTATAGAAAGAGAGTTGGGGTAGTATCTATTGTAGAAAAAGTGGTGGGAACCCGGCTTAGGTGGTTTGGGCATGTAGAGAGAAGACTTGTAGATTCTGTAGTAAGGAGACTAGATCTAGAGATTAATGGGTTGGATAGAAATATGATATGATATAACATTATGGCGTCATTTGGTCCATGTAGCCGACCACACTTAGTGGGATAAGACTTTGTTGTTGTAGTTGTTGATATTGTCGTTGTAGTAGTCTGATTGATGAAGAGGAAGAGGTGGACGTGTTACCGTTTTTTGTGCTTTTGTTACTGTGTTGTGATTAATTTGCATATATTTAAATGTTAGGAAATTATTTTAAGGAAAAAACTTACCTAAAACAGTGAAGGTATGGCTGCTGTTCTCAATAAGAAATATAACATGCAGAGAACAAAGATCTTGAGTTAGTTATGAAAAGTCGCTTATAAGTTATAATTGTGTTTGATAATAGGAAGTTATGTTTTTAGTTAACAGTAGTACCAACGGCACCTGTGGTAATGTAGGTAAGTTTTGTCCTTATTTTAAATGGTATGGCCATCCTTGCATCACCGTCTTTCAAAAGTATTTTTTTTTCCAACTATTGTGTGATTATCTTCACTTTCACCAAAGGACTAAATGCGTTGAAAAGTTTACTATTCTCTGATTTATTTTCATGTGAATATTCTTCATCTTTTTGATCCTCTTGCAAATTTTTTATTTTCTTTCAGGTTCAATGCCACTGCGGTTTACATTTCTCCGTGCAGAATCTTTGCGGGAAGTTGGTCTAGCTAAGCGCAGTATGAATTCAAAACATACTGAAGATCAGTCCAATTCTGTAATGGGTATGAATCAGTTTTGTCAGGAACCACATGCTGTAAAGAATAAAGGAGAATCCTTTCTTGGATCTTCTTCTGAGAAGGTTAGGGAAGTTGATCAGGAAGTCAATCATGGGAAACACAATGTAGAAATTGAGGGATTTAAGAGTGGAAGTATGTCTAATTCTGCTAGAACGACAGTGAGAAAACTTTCCTATGATGATTTACCTGTTGAAACAAATGAACCTTCTCTCAGTAACGATGATTTCAACAAAGGAGATAGCTTGGATAAGTTACCTGACTACCATGGAGAATTGGAAAGGTTAAGCTATGTTAACTCTCAAGAACCTGGGGAATTATCTCAGCTCAATGCTCTTGATTGTATAGATAGGTTTATCAAAAGTAATATTATGGAGTTGGATGAAGAAACTACACATGTTACTAATAAGGAGAAAAAGTCAGAACCACTTCCTTGCATAAAAGGGCCACAAAGTTTGTCCAAGAAAATTAATGATAGAAGCAGAGCTAAACAGACTGAGATTTATGACTGGGATGATAACCACGAGGATGAAAGCGGGGGAGGTATATACCTAAGAAGAAAGGAATATTTCTTTGAGGATGGAACTCATAGGCCAAGATCTTTGCCAGGATGCCGGAAGATCAAATCACGCCGACCAAAAGGTGATAAGGAAGAGGAAGAACAATCAAGTATCCCAGTTAAAAGGAAGACTGCTGCTCGATCTGAATCAAGACTGGGGATGCATAATCTTAAAATAAGGGATGATAATATACAAGAAGCAACAAGAAAGTTGGAAAGGAATATTGCTGATGAATTGGATGAACAAGTTGACGCCAATTGCTCCAGAGGAGAGATGGGACCTAATAGTAATGAAGTTGGACATGAAATGTTGAATGTAGGTGTAGATACTCAAATAGCTGCTGAAGCTATGGAAGCCTTATACAACACTGTGGAGGTTGTTGATCATGTTACTAATGATGCCACTCGTGTTACTAGAAGCAGGTCATCTTATCAACTCAATAACTCTTCCACTGGAAAAATGGGGCCAGTTACACCAAAGGAACATACAGGAAAGTATGACAGGAAAAGGAAAGTTGATGTTAAATCAGTTTTGCAAACTTCAGGTTTATCAAAGAAATGTACTAAAAAGGTTGGGCAGTGTGAAAAGAGCAATGTGGTGAGCAGATCAAAGAAGAGTAAGCTAAATGCAGAAGGCAACCAAACATCTGGTGCTAATGAAAATGGTAGAATAGTGTCGTCTCCAGTCGGTGAGAGAAGAAAGTCAGCCGAAGCTTTAAAAAGACATCAGCTTGATGAGTTAAATAATCTCAAAAGTAATGATGGAGGTAGTACTTTCAATGAAAAACAATTTCATGGTGATGATTTTCATTGTACACCAATTGCTCGTAGAACTAGACGGTCGTTAGCAGTGGACACATCATTGAAAAGTTTGAGAGAAGGGGCAACAAGGATTGACCCCCATGAGAAAAGTAGTGGAGCTGCTCTACAAGCGCCTAAAGGGTTGGGTCCTGAATCTACTCTGGGGTCTTCTGATCACTTTGCAGTAGATAATACTACTGAATTGTGTCACCAGGAGAAATTTGCTTCAAAGGAAAATATTGGTAATGGCATTGCTGTGGATACATTAGATTATCCTAGAAGAAGGAGATCTCTTCGGATTAATAAGTTTTCTAATCATGATGAAGGATCTGAGAATTTTGCTGGCTCATCTAAGTCATTCAAGCAAACAGAAGATATTGGGAAAGGTTCATCTAAGTCATTTGAGCAAACTGAAGTTATTGAGAAATCTACTACGCGGAAGAGAAAAATGAGGACTCGTTCTGTTGTCAAATCACATGTGAATAACCCCAGTCCTTCATCATGTGGTGGTTTGGTAGTACCTTCTGAAGATCAAATGCAAAGAAAAAATTTGGAGTCAAATTTGAATTCAAATGTTAAAAATAATGCTGATGTCTGGTTCTCCAACAAAAATTTGAAGGTTGCCATTCCAAATGAATCGCCAAGAGATGGATACAAGTCGCCTGACCTGGCTACCACATCTCCAGCTAACTGCAAGACACCCGTGAACAATGCATCGCCTGTTTGTATGGGTGATGATTATTACAAGAAATCATGCAATAGAAATCTTTCAAAATCATGCCTTCACAAAGTATTTCGTAAGGATCTTCTTAAAGAAATGCGTAGCTTAAGTGCCAGTAGACCTGAATTAATTACTCCCTCTAAGGATTCAAGGAAGAGAAAGGATATGAGTGATGTTCGAATTCTTTACAGCCGTCACTTGGATGAAGATATTATTAAGCATCAGAAAAAGGTATGGTCTGAATTTTTAGAAACTCCTATGTGCAAATACATACATGTAGTTGGGTTTTAGTTAAATTTTGTTTCTCGTGTTTATTACAGATACTAGCACGACTTGGAGTTTCTGTAGCATCCTCAGTTGCAGATGCAACCCATTTCATAACAGATCAATTTGTGCGTACACGGAATATGTTAGAAGCTATTGCTTTTGGAAAACCGGTGGTCACACACTTGTGGATTGAGAGCTGTGGACAAGCTAACTGTTTTATGGATGAGAAAAATTACATATTGAGGGATGCCAAAAAGGAAAAGGAGTTTGGTTTCAGCATGCCAGTCTCACTAGCACGGGCATCCAAGCATCCACTTTTAGAGGTAAATATGTGGAACTCATGATAAGAAAGGATCAAATATTGACCATTAGAAGTAAGTTATTTGACCTTTTGGATTGATCACATATCTTAAGTAATTTCTATGTTGACCACCTATGCAAATATTGCTTGGTCATGGTATGCATCTGACCTCACTTAATTTATACTATATATAATATATCTGTAAACCCTACCCAATGGTATAAAGACTTGGTTGTTGATAATATACCTCACTAGGACTTAAATCCTCTTAATTTAACAACTTTTCATTTATGTCCCTCTAGCATCAATAGTTTAGTGTTTCCTTATTTTTCGACCTGATGCGATTAAGCAACCTGTTTTTTTTGGTGTTGATCTTATACTTTTTGATGATGTAAAGTTGTGCTGCATCATCTAATTGTAACCCTGGTTAGCAAACAAGGTGTTGCAAAATTTAGTGCTGGCTCTAGTAAAAAAGATTGTGTGTCTCATTATCTGCTCAAGTGGATTAATTACTGCCCCAAAACTAAGTGAACCAAAATTGATGCAAAACTTCGAAGGACAAAATCTTAACTAAGCCTATTTCAAATACAAATAGATGCATTTTCTTTTTGTTGCTCCTGATGAATCATCATAATTTTATGCAGGGTCGAAGAGTATTGATCACCCCAAATACTAAACCCAGTAAAGAGATCATTTCAAGTTTAGTATTGGCAGTTCATGGCCAGGTATGCATCTTTCTTCGTGATTATTCTCCAGCTATGCTCATCTGTGGTTGAAGAAAAATATATGTTTAATATTTCTTCGTTTCCATGTTTTTCCGTTAACAATTGCTAGATCAAACAAAGTATTTTCCTTGTTTAACTTCATTCTAATTTTATTATGAGTTAGTATTGCGGTTCATTACTGATTTTTAATCGTGAAATTGTCTATTGTTGTCTCCTGGGCTCAGAAACACAGATCCATGTTCGTATAATTGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCTAATATCTCTTTGCTTGTGATCGTGTCTCCTAGGCAGTGGAGAGGGTTGGCAGATCTGCTTTGAAGGACCATAAAATTCCAGATGATCTTCTGATCCTATCATGTGAAGAAGATTATGCCTCTTGTGTGCCTTTTCTTGAAAAGGGTTAGAAACTGTTTCATTTGATTTGAAAAACTTATCCTCTGCGCATGATTAAAATACTATGTGTTACATTTGCAGGGGCAATGGTGTACAGTTCAGAATTATTGTTGAATGGCATAGTTACTCAGAAGCTGGAGTATGAAAGGTTTGTTGTTTTTGTGCTCGTGAACAATGTTTTCATTCAACGCAGGTCTTGTCCTTTGGGTTAGGGGGATTTAGAACTTTTTGGTTTATCCAATTCCTAGTGCAGGAATTTTTGCTTTAAGATTTTAATTTCTAATGTGCTTCTACACAACTGCTACCTCTAGACCACAAATTTTATGATTAAGGTTATGTTTGCTAATATTTATGGTAGTTCATTCCTGATATTCACCTTTTGGTTGCAGGCATCTTCTTTTTGCAGACCACGTGAAGAAAACTCGGTCAACTGTATGGTTGAAAAGAGATAATAGAAAATTTACTCCTGTGACCAAGTGCAATTAG

Protein sequence

>MS.gene96190.t1

MAKDEEHRIHTNTSDTQPFDDDSSSHSSQYEDDKENRFFEDTVPFDDDETQAVDLGDETEVLDDIAGETQKFDDFDTELLVEGYESDGTEVLEDMDDEGVDDHQCRDSGGSVDREDDVNRSINERSGDEKHTSSGSMPLRFTFLRAESLREVGLAKRSMNSKHTEDQSNSVMGMNQFCQEPHAVKNKGESFLGSSSEKVREVDQEVNHGKHNVEIEGFKSGSMSNSARTTVRKLSYDDLPVETNEPSLSNDDFNKGDSLDKLPDYHGELERLSYVNSQEPGELSQLNALDCIDRFIKSNIMELDEETTHVTNKEKKSEPLPCIKGPQSLSKKINDRSRAKQTEIYDWDDNHEDESGGGIYLRRKEYFFEDGTHRPRSLPGCRKIKSRRPKGDKEEEEQSSIPVKRKTAARSESRLGMHNLKIRDDNIQEATRKLERNIADELDEQVDANCSRGEMGPNSNEVGHEMLNVGVDTQIAAEAMEALYNTVEVVDHVTNDATRVTRSRSSYQLNNSSTGKMGPVTPKEHTGKYDRKRKVDVKSVLQTSGLSKKCTKKVGQCEKSNVVSRSKKSKLNAEGNQTSGANENGRIVSSPVGERRKSAEALKRHQLDELNNLKSNDGGSTFNEKQFHGDDFHCTPIARRTRRSLAVDTSLKSLREGATRIDPHEKSSGAALQAPKGLGPESTLGSSDHFAVDNTTELCHQEKFASKENIGNGIAVDTLDYPRRRRSLRINKFSNHDEGSENFAGSSKSFKQTEDIGKGSSKSFEQTEVIEKSTTRKRKMRTRSVVKSHVNNPSPSSCGGLVVPSEDQMQRKNLESNLNSNVKNNADVWFSNKNLKVAIPNESPRDGYKSPDLATTSPANCKTPVNNASPVCMGDDYYKKSCNRNLSKSCLHKVFRKDLLKEMRSLSASRPELITPSKDSRKRKDMSDVRILYSRHLDEDIIKHQKKILARLGVSVASSVADATHFITDQFVRTRNMLEAIAFGKPVVTHLWIESCGQANCFMDEKNYILRDAKKEKEFGFSMPVSLARASKHPLLEGRRVLITPNTKPSKEIISSLVLAVHGQAVERVGRSALKDHKIPDDLLILSCEEDYASCVPFLEKGAMVYSSELLLNGIVTQKLEYERHLLFADHVKKTRSTVWLKRDNRKFTPVTKCN