Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24531.t1 | XP_013465928.1 | 83 | 523 | 86 | 2 | 62 | 583 | 28 | 548 | 2.40E-215 | 758.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24531.t1 | Q8VY07 | 47.9 | 545 | 249 | 11 | 62 | 583 | 28 | 560 | 1.2e-111 | 405.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24531.t1 | A0A072VD74 | 83.0 | 523 | 86 | 2 | 62 | 583 | 28 | 548 | 1.7e-215 | 758.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene24531 | 0.871049 | 9.19E-67 | -1.69E-46 |
| MS.gene049807 | MS.gene24531 | 0.825696 | 4.07E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene24531 | 0.835778 | 1.38E-56 | -1.69E-46 |
| MS.gene050752 | MS.gene24531 | 0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene24531 | 0.847132 | 1.40E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene24531 | 0.841148 | 5.66E-58 | -1.69E-46 |
| MS.gene051234 | MS.gene24531 | 0.883752 | 3.44E-71 | -1.69E-46 |
| MS.gene051343 | MS.gene24531 | 0.806981 | 6.32E-50 | -1.69E-46 |
| MS.gene051642 | MS.gene24531 | 0.950877 | 6.62E-109 | -1.69E-46 |
| MS.gene052072 | MS.gene24531 | 0.819687 | 1.02E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene24531 | 0.842282 | 2.84E-58 | -1.69E-46 |
| MS.gene052335 | MS.gene24531 | 0.814939 | 1.19E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene24531 | 0.826584 | 2.50E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene24531 | 0.861579 | 9.29E-64 | -1.69E-46 |
| MS.gene054004 | MS.gene24531 | 0.864922 | 8.58E-65 | -1.69E-46 |
| MS.gene054005 | MS.gene24531 | 0.84604 | 2.79E-59 | -1.69E-46 |
| MS.gene054403 | MS.gene24531 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene055221 | MS.gene24531 | 0.806983 | 6.31E-50 | -1.69E-46 |
| MS.gene055979 | MS.gene24531 | 0.805032 | 1.62E-49 | -1.69E-46 |
| MS.gene056578 | MS.gene24531 | 0.823561 | 1.30E-53 | -1.69E-46 |
| MS.gene056693 | MS.gene24531 | 0.801268 | 9.76E-49 | -1.69E-46 |
| MS.gene056881 | MS.gene24531 | 0.838514 | 2.75E-57 | -1.69E-46 |
| MS.gene058149 | MS.gene24531 | 0.821799 | 3.33E-53 | -1.69E-46 |
| MS.gene05859 | MS.gene24531 | 0.83782 | 4.15E-57 | -1.69E-46 |
| MS.gene05860 | MS.gene24531 | 0.840662 | 7.60E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene24531 | 0.809034 | 2.31E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene24531 | 0.825573 | 4.36E-54 | -1.69E-46 |
| MS.gene059802 | MS.gene24531 | 0.837817 | 4.15E-57 | -1.69E-46 |
| MS.gene060343 | MS.gene24531 | -0.80795 | 3.93E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene24531 | 0.856384 | 3.34E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24531.t1 | MTR_1g016980 | 93.881 | 523 | 29 | 2 | 62 | 583 | 28 | 548 | 0.0 | 958 |
| MS.gene24531.t1 | MTR_7g006280 | 48.205 | 195 | 85 | 3 | 61 | 255 | 25 | 203 | 1.33e-56 | 205 |
| MS.gene24531.t1 | MTR_7g006280 | 46.753 | 77 | 36 | 1 | 484 | 555 | 790 | 866 | 1.51e-12 | 71.2 |
| MS.gene24531.t1 | MTR_7g006100 | 44.388 | 196 | 92 | 3 | 65 | 255 | 612 | 795 | 5.90e-44 | 167 |
| MS.gene24531.t1 | MTR_4g063895 | 32.000 | 125 | 84 | 1 | 66 | 189 | 2 | 126 | 6.00e-17 | 81.6 |
| MS.gene24531.t1 | MTR_4g063895 | 32.558 | 129 | 84 | 2 | 64 | 189 | 33 | 161 | 8.71e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24531.t1 | AT5G11710 | 53.929 | 560 | 193 | 19 | 62 | 583 | 28 | 560 | 7.47e-164 | 479 |
| MS.gene24531.t1 | AT5G11710 | 53.929 | 560 | 193 | 19 | 62 | 583 | 28 | 560 | 7.47e-164 | 479 |
| MS.gene24531.t1 | AT5G11710 | 53.929 | 560 | 193 | 19 | 62 | 583 | 28 | 560 | 7.47e-164 | 479 |
| MS.gene24531.t1 | AT2G43160 | 43.321 | 277 | 118 | 8 | 61 | 303 | 25 | 296 | 1.35e-57 | 204 |
| MS.gene24531.t1 | AT2G43160 | 43.321 | 277 | 118 | 8 | 61 | 303 | 25 | 296 | 1.12e-56 | 205 |
| MS.gene24531.t1 | AT2G43160 | 43.321 | 277 | 118 | 8 | 61 | 303 | 25 | 296 | 1.12e-56 | 205 |
| MS.gene24531.t1 | AT2G43160 | 43.321 | 277 | 118 | 8 | 61 | 303 | 25 | 296 | 1.12e-56 | 205 |
| MS.gene24531.t1 | AT2G43160 | 43.321 | 277 | 118 | 8 | 61 | 303 | 25 | 296 | 1.12e-56 | 205 |
| MS.gene24531.t1 | AT3G59290 | 45.778 | 225 | 100 | 6 | 61 | 275 | 25 | 237 | 2.53e-53 | 196 |
| MS.gene24531.t1 | AT3G23350 | 32.576 | 132 | 84 | 2 | 63 | 189 | 34 | 165 | 2.47e-13 | 71.2 |
| MS.gene24531.t1 | AT3G23350 | 32.576 | 132 | 84 | 2 | 63 | 189 | 33 | 164 | 2.49e-13 | 71.2 |
| MS.gene24531.t1 | AT3G46540 | 35.849 | 106 | 67 | 1 | 68 | 172 | 4 | 109 | 8.83e-13 | 69.3 |
| MS.gene24531.t1 | AT3G46540 | 35.849 | 106 | 67 | 1 | 68 | 172 | 40 | 145 | 1.17e-12 | 69.3 |
| MS.gene24531.t1 | AT3G46540 | 35.849 | 106 | 67 | 1 | 68 | 172 | 52 | 157 | 1.17e-12 | 69.7 |
Find 127 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGCTGTTATAGAGTATT+TGG | 0.202159 | 1.2:+5846514 | MS.gene24531:CDS |
| AGTAACAAATATGGAGGTTT+TGG | 0.263690 | 1.2:+5847033 | MS.gene24531:CDS |
| TTCAGGTGAAGTCTGGCATT+TGG | 0.264950 | 1.2:+5849862 | MS.gene24531:CDS |
| CTCTAATGTTTCGTCTAAAA+AGG | 0.280664 | 1.2:+5849833 | MS.gene24531:CDS |
| GGCAGCCAAAACTATCAATT+TGG | 0.281481 | 1.2:+5850553 | MS.gene24531:CDS |
| GGCTGCTCTTTAGCAGGTTT+CGG | 0.287850 | 1.2:+5843692 | MS.gene24531:CDS |
| TCAAACCAGGTTGATCTCTT+TGG | 0.293931 | 1.2:+5848656 | MS.gene24531:CDS |
| TCAGGTGAAGTCTGGCATTT+GGG | 0.306109 | 1.2:+5849863 | MS.gene24531:CDS |
| TTCTGTTGGCTTCTCTCTGT+TGG | 0.308517 | 1.2:+5843508 | MS.gene24531:CDS |
| TGGACAAGATTGGTTGAAAC+TGG | 0.327690 | 1.2:+5846350 | MS.gene24531:CDS |
| ACCCACCAAATTGATAGTTT+TGG | 0.328870 | 1.2:-5850558 | None:intergenic |
| TTTGAATATGTTGAGCCTAA+TGG | 0.332003 | 1.2:+5846722 | MS.gene24531:CDS |
| AGCTGGTTATGAATGTTCTT+TGG | 0.350077 | 1.2:+5846330 | MS.gene24531:CDS |
| TTGAATATGTTGAGCCTAAT+GGG | 0.363331 | 1.2:+5846723 | MS.gene24531:CDS |
| TTGCTGTCAGGCTGCACAGC+TGG | 0.369928 | 1.2:-5849630 | None:intergenic |
| GGGCTGTTGTCTACGTTTGT+TGG | 0.381649 | 1.2:+5843529 | MS.gene24531:CDS |
| TCTGTTGGCTTCTCTCTGTT+GGG | 0.389961 | 1.2:+5843509 | MS.gene24531:CDS |
| AGTGGGAGCAGTAACAAATA+TGG | 0.392500 | 1.2:+5847024 | MS.gene24531:CDS |
| AGAGCTATGGGTACAGGATC+TGG | 0.399817 | 1.2:+5850466 | MS.gene24531:CDS |
| AGATTTGCTCGGTGACTTCA+TGG | 0.401461 | 1.2:+5848682 | MS.gene24531:CDS |
| TGTGCTTAATTTAGGTATGT+TGG | 0.422310 | 1.2:+5846952 | MS.gene24531:intron |
| AGTGGTGGCTGCTCTTTAGC+AGG | 0.423616 | 1.2:+5843686 | MS.gene24531:CDS |
| AGGCTCAACATATTCAAAAC+TGG | 0.430008 | 1.2:-5846717 | None:intergenic |
| TGCAACTGATGATGAACCTT+GGG | 0.433222 | 1.2:+5846053 | MS.gene24531:CDS |
| GGCTGTTGTCTACGTTTGTT+GGG | 0.434600 | 1.2:+5843530 | MS.gene24531:CDS |
| TCAGGCTGCACAGCTGGTGC+AGG | 0.438377 | 1.2:-5849624 | None:intergenic |
| AAGGTTCTGCACGGTCTGTC+AGG | 0.441213 | 1.2:+5847187 | MS.gene24531:CDS |
| CCCTCCAACTACATTATACA+TGG | 0.448211 | 1.2:+5850441 | MS.gene24531:CDS |
| GAATGTTCTTTGGACAAGAT+TGG | 0.451236 | 1.2:+5846340 | MS.gene24531:CDS |
| ATTATACATGGGGAGAGCTA+TGG | 0.454996 | 1.2:+5850453 | MS.gene24531:CDS |
| CTCTTTGGACAAGATTTGCT+CGG | 0.461867 | 1.2:+5848671 | MS.gene24531:CDS |
| GATCCCTCAAAATTATTAAG+TGG | 0.467363 | 1.2:-5849708 | None:intergenic |
| AAAGTATCCCTTGTCGATGT+TGG | 0.469042 | 1.2:+5850373 | MS.gene24531:CDS |
| CTTGTCGATGTTGGAATTGT+GGG | 0.472687 | 1.2:+5850382 | MS.gene24531:CDS |
| CTCCCCATGTATAATGTAGT+TGG | 0.476200 | 1.2:-5850445 | None:intergenic |
| TCTTCCTTGCAGCAAAAGTC+AGG | 0.478751 | 1.2:+5848218 | MS.gene24531:intron |
| AGTCCCACATCCTTCCCATT+AGG | 0.482355 | 1.2:-5846737 | None:intergenic |
| TTAGCAGGTTTCGGTGGTGT+AGG | 0.483497 | 1.2:+5843701 | MS.gene24531:CDS |
| GGGTCCTCATGGTACTGTGC+TGG | 0.484662 | 1.2:+5846074 | MS.gene24531:CDS |
| GGATCTGGTCTTGGTATGTA+TGG | 0.487460 | 1.2:+5850481 | MS.gene24531:CDS |
| GTCAGAGGTTGATCTCTTTG+CGG | 0.488917 | 1.2:+5848751 | MS.gene24531:CDS |
| AGTGGAATCACATACAAATC+CGG | 0.492190 | 1.2:+5846985 | MS.gene24531:CDS |
| ATGGGTACAGGATCTGGTCT+TGG | 0.504365 | 1.2:+5850472 | MS.gene24531:CDS |
| CTACTGGTAGAAGCTTCTGT+TGG | 0.504621 | 1.2:+5843494 | MS.gene24531:CDS |
| CCTTGTCGATGTTGGAATTG+TGG | 0.508418 | 1.2:+5850381 | MS.gene24531:CDS |
| AGCCAAAACTATCAATTTGG+TGG | 0.514743 | 1.2:+5850556 | MS.gene24531:CDS |
| CTTCAAACAGAGACTTCAGC+TGG | 0.522456 | 1.2:+5848629 | MS.gene24531:intron |
| CAAATTTGACCTACTTGTCA+CGG | 0.524222 | 1.2:-5846847 | None:intergenic |
| TCTGACGCATCACTAGTTGC+TGG | 0.528495 | 1.2:-5848734 | None:intergenic |
| ATGGGGAGAGCTATGGGTAC+AGG | 0.530659 | 1.2:+5850460 | MS.gene24531:CDS |
| TATGTTGGTGTTTCATCTAG+TGG | 0.532003 | 1.2:+5846967 | MS.gene24531:CDS |
| TTTCAGTACTGAATGTCAGC+TGG | 0.535749 | 1.2:+5846313 | MS.gene24531:intron |
| GGATTAGATGAAAGAGAGAA+AGG | 0.535777 | 1.2:+5850418 | MS.gene24531:CDS |
| CCCATGTATAATGTAGTTGG+AGG | 0.538487 | 1.2:-5850442 | None:intergenic |
| GCGCTATGATGAAGCAAAAG+TGG | 0.543758 | 1.2:+5847098 | MS.gene24531:CDS |
| AGGATGTGGGACTCAATGTA+AGG | 0.551356 | 1.2:+5846747 | MS.gene24531:CDS |
| TGCTCTTTAGCAGGTTTCGG+TGG | 0.553927 | 1.2:+5843695 | MS.gene24531:CDS |
| TTATACATGGGGAGAGCTAT+GGG | 0.558608 | 1.2:+5850454 | MS.gene24531:CDS |
| TCAAAAGTGCTGTTATTCAC+AGG | 0.558665 | 1.2:-5849669 | None:intergenic |
| TGTTGGTGTAACTGAAGGAA+TGG | 0.559111 | 1.2:-5849583 | None:intergenic |
| ATTGAAAACAAGTCAACTGT+TGG | 0.563012 | 1.2:-5849600 | None:intergenic |
| TCGGTGGCAGCATTAGTTGA+GGG | 0.563296 | 1.2:-5849780 | None:intergenic |
| AAGATTGGTTGAAACTGGAA+AGG | 0.564709 | 1.2:+5846355 | MS.gene24531:CDS |
| TTAAGTGGAACAGAAGCAAA+GGG | 0.564718 | 1.2:-5849693 | None:intergenic |
| ATTAAGTGGAACAGAAGCAA+AGG | 0.569259 | 1.2:-5849694 | None:intergenic |
| TCTCCAGCTGTTGACTGTGA+AGG | 0.569619 | 1.2:-5850511 | None:intergenic |
| ACTACTAAATGAGGTTGTCC+CGG | 0.571326 | 1.2:-5847004 | None:intergenic |
| CAGCTATGCAGCTCGAGTGG+TGG | 0.572213 | 1.2:+5843671 | MS.gene24531:intron |
| ACTCCTTCACAGTCAACAGC+TGG | 0.572617 | 1.2:+5850508 | MS.gene24531:CDS |
| GCCAAAACTATCAATTTGGT+GGG | 0.572703 | 1.2:+5850557 | MS.gene24531:CDS |
| GGTACACTTGCACTTTGAGA+AGG | 0.573687 | 1.2:-5848291 | None:intergenic |
| GTGGAATCACATACAAATCC+GGG | 0.577208 | 1.2:+5846986 | MS.gene24531:CDS |
| ACTTACGAGCAGATATATTG+AGG | 0.577768 | 1.2:-5849914 | None:intergenic |
| ATCGGTGGCAGCATTAGTTG+AGG | 0.578958 | 1.2:-5849781 | None:intergenic |
| ATTCCATGCTCAGGATGAAG+TGG | 0.579767 | 1.2:+5849542 | MS.gene24531:intron |
| TCAACTGTTGGTGTAACTGA+AGG | 0.580371 | 1.2:-5849588 | None:intergenic |
| GATGAACCTTGGGGTCCTCA+TGG | 0.580644 | 1.2:+5846063 | MS.gene24531:CDS |
| TAGTGATAGCTACGGAGACA+AGG | 0.581504 | 1.2:+5847074 | MS.gene24531:CDS |
| TCAACTAATGCTGCCACCGA+TGG | 0.582272 | 1.2:+5849783 | MS.gene24531:CDS |
| GGGACTCAATGTAAGGAAGA+AGG | 0.582398 | 1.2:+5846754 | MS.gene24531:CDS |
| AGCAACTAGTGATGCGTCAG+AGG | 0.584280 | 1.2:+5848736 | MS.gene24531:CDS |
| ACTGCTCCCACTACTAAATG+AGG | 0.585899 | 1.2:-5847013 | None:intergenic |
| AGGAGCTAGTTCTCAACCAC+AGG | 0.588172 | 1.2:+5848811 | MS.gene24531:CDS |
| TCATCAAAGTCGTCCTCAGT+AGG | 0.591925 | 1.2:-5848312 | None:intergenic |
| TTTACCACTTGTACTACCAT+CGG | 0.597131 | 1.2:-5849799 | None:intergenic |
| GGACAACCTCATTTAGTAGT+GGG | 0.598565 | 1.2:+5847007 | MS.gene24531:CDS |
| TGGGCTGATTCGCTAAGCCG+TGG | 0.607031 | 1.2:+5849882 | MS.gene24531:CDS |
| CTAGCTCCTTTGTCCGCATG+TGG | 0.609894 | 1.2:-5848797 | None:intergenic |
| TGAGCCTAATGGGAAGGATG+TGG | 0.610430 | 1.2:+5846733 | MS.gene24531:CDS |
| CCACAATTCCAACATCGACA+AGG | 0.611361 | 1.2:-5850381 | None:intergenic |
| ATGCAACTGATGATGAACCT+TGG | 0.611657 | 1.2:+5846052 | MS.gene24531:CDS |
| TTCAGCTGGAATCTCAAACC+AGG | 0.612206 | 1.2:+5848643 | MS.gene24531:CDS |
| TGGTGTAGGTGTTGACGCAG+AGG | 0.612685 | 1.2:+5843715 | MS.gene24531:CDS |
| GTCGATGTTGGAATTGTGGG+TGG | 0.616546 | 1.2:+5850385 | MS.gene24531:CDS |
| ATAGAGTATTTGGTATCACA+TGG | 0.617992 | 1.2:+5846524 | MS.gene24531:CDS |
| GGGACAACCTCATTTAGTAG+TGG | 0.619718 | 1.2:+5847006 | MS.gene24531:CDS |
| GATAGGTTTAGTGATAGCTA+CGG | 0.620987 | 1.2:+5847066 | MS.gene24531:CDS |
| CACAATTCCAACATCGACAA+GGG | 0.621760 | 1.2:-5850380 | None:intergenic |
| CTTGTCCAAAGAGATCAACC+TGG | 0.623812 | 1.2:-5848661 | None:intergenic |
| TGGTTGAAACTGGAAAGGAT+TGG | 0.625908 | 1.2:+5846360 | MS.gene24531:CDS |
| GTTGGTGTAACTGAAGGAAT+GGG | 0.627816 | 1.2:-5849582 | None:intergenic |
| TACTCAGGAAAATCACGCCA+TGG | 0.632757 | 1.2:+5847129 | MS.gene24531:CDS |
| TTACTAGTAGATGTTCCTCT+CGG | 0.634177 | 1.2:-5848342 | None:intergenic |
| AGTGATAGCTACGGAGACAA+GGG | 0.634809 | 1.2:+5847075 | MS.gene24531:CDS |
| CCTCCAACTACATTATACAT+GGG | 0.635166 | 1.2:+5850442 | MS.gene24531:CDS |
| GCCACCGATGGTAGTACAAG+TGG | 0.636003 | 1.2:+5849795 | MS.gene24531:CDS |
| GGATTGGCGATATGTATACA+AGG | 0.637371 | 1.2:+5846376 | MS.gene24531:CDS |
| TATTGAGGTCAATCAATCCA+CGG | 0.637570 | 1.2:-5849899 | None:intergenic |
| TAGCAGCTATGCAGCTCGAG+TGG | 0.637727 | 1.2:+5843668 | MS.gene24531:intron |
| CCATGTATAATGTAGTTGGA+GGG | 0.640533 | 1.2:-5850441 | None:intergenic |
| TCTGGTCTTGGTATGTATGG+TGG | 0.648533 | 1.2:+5850484 | MS.gene24531:CDS |
| ACCACTTGTACTACCATCGG+TGG | 0.649891 | 1.2:-5849796 | None:intergenic |
| GAGCCTAATGGGAAGGATGT+GGG | 0.656107 | 1.2:+5846734 | MS.gene24531:CDS |
| GGGAGCAGTAACAAATATGG+AGG | 0.659082 | 1.2:+5847027 | MS.gene24531:CDS |
| GCAGCACCACATGCGGACAA+AGG | 0.659400 | 1.2:+5848791 | MS.gene24531:CDS |
| ACAGTACCATGAGGACCCCA+AGG | 0.661607 | 1.2:-5846069 | None:intergenic |
| AAGTGCAAGTGTACCTACTG+AGG | 0.672364 | 1.2:+5848299 | MS.gene24531:CDS |
| GTGATAGCTACGGAGACAAG+GGG | 0.672418 | 1.2:+5847076 | MS.gene24531:CDS |
| CTCCAACTACATTATACATG+GGG | 0.675489 | 1.2:+5850443 | MS.gene24531:CDS |
| AAAGTGGACAAAGATTACTC+AGG | 0.681481 | 1.2:+5847114 | MS.gene24531:CDS |
| TGTGCAGCCTGACAGCAAGT+CGG | 0.682310 | 1.2:+5849635 | MS.gene24531:CDS |
| ATATGTTGAGCCTAATGGGA+AGG | 0.688159 | 1.2:+5846727 | MS.gene24531:CDS |
| ATTGTGGGTGGACTAAGCGA+TGG | 0.688579 | 1.2:+5850397 | MS.gene24531:CDS |
| TGTGCTGGCAGAGATTGCAA+CGG | 0.693145 | 1.2:+5846089 | MS.gene24531:CDS |
| TGTATCAGCAGCACCACATG+CGG | 0.718450 | 1.2:+5848784 | MS.gene24531:CDS |
| GCAACTGATGATGAACCTTG+GGG | 0.746004 | 1.2:+5846054 | MS.gene24531:CDS |
| TCTGCCAGCACAGTACCATG+AGG | 0.764740 | 1.2:-5846078 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 5843442 | 5850591 | 5843442 | ID=MS.gene24531 |
| chr1.2 | mRNA | 5843442 | 5850591 | 5843442 | ID=MS.gene24531.t1;Parent=MS.gene24531 |
| chr1.2 | exon | 5843442 | 5843573 | 5843442 | ID=MS.gene24531.t1.exon1;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5843442 | 5843573 | 5843442 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5843674 | 5843736 | 5843674 | ID=MS.gene24531.t1.exon2;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5843674 | 5843736 | 5843674 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5846045 | 5846124 | 5846045 | ID=MS.gene24531.t1.exon3;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5846045 | 5846124 | 5846045 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5846319 | 5846397 | 5846319 | ID=MS.gene24531.t1.exon4;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5846319 | 5846397 | 5846319 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5846512 | 5846595 | 5846512 | ID=MS.gene24531.t1.exon5;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5846512 | 5846595 | 5846512 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5846710 | 5846855 | 5846710 | ID=MS.gene24531.t1.exon6;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5846710 | 5846855 | 5846710 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5846966 | 5847208 | 5846966 | ID=MS.gene24531.t1.exon7;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5846966 | 5847208 | 5846966 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5848230 | 5848360 | 5848230 | ID=MS.gene24531.t1.exon8;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5848230 | 5848360 | 5848230 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5848639 | 5848832 | 5848639 | ID=MS.gene24531.t1.exon9;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5848639 | 5848832 | 5848639 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5849555 | 5849930 | 5849555 | ID=MS.gene24531.t1.exon10;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5849555 | 5849930 | 5849555 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| chr1.2 | exon | 5850368 | 5850591 | 5850368 | ID=MS.gene24531.t1.exon11;Parent=MS.gene24531.t1 |
| chr1.2 | CDS | 5850368 | 5850591 | 5850368 | ID=cds.MS.gene24531.t1;Parent=MS.gene24531.t1 |
| Gene Sequence |
| Protein sequence |
