Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90536.t1 | XP_013464064.1 | 91.9 | 296 | 24 | 0 | 1 | 296 | 1 | 296 | 3.90E-150 | 540.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90536.t1 | O65220 | 67.6 | 247 | 70 | 5 | 55 | 296 | 40 | 281 | 5.7e-89 | 328.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90536.t1 | A0A072V7R3 | 91.9 | 296 | 24 | 0 | 1 | 296 | 1 | 296 | 2.8e-150 | 540.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene90536 | -0.808253 | 3.39E-50 | -1.69E-46 |
MS.gene049368 | MS.gene90536 | -0.811672 | 6.23E-51 | -1.69E-46 |
MS.gene049411 | MS.gene90536 | -0.81556 | 8.68E-52 | -1.69E-46 |
MS.gene050258 | MS.gene90536 | -0.808633 | 2.81E-50 | -1.69E-46 |
MS.gene050689 | MS.gene90536 | -0.80252 | 5.40E-49 | -1.69E-46 |
MS.gene051234 | MS.gene90536 | -0.818818 | 1.61E-52 | -1.69E-46 |
MS.gene051343 | MS.gene90536 | -0.810172 | 1.32E-50 | -1.69E-46 |
MS.gene052072 | MS.gene90536 | -0.811219 | 7.81E-51 | -1.69E-46 |
MS.gene052155 | MS.gene90536 | 0.800036 | 1.74E-48 | -1.69E-46 |
MS.gene052307 | MS.gene90536 | -0.82188 | 3.19E-53 | -1.69E-46 |
MS.gene052609 | MS.gene90536 | -0.840884 | 6.64E-58 | -1.69E-46 |
MS.gene053143 | MS.gene90536 | -0.848251 | 6.91E-60 | -1.69E-46 |
MS.gene053541 | MS.gene90536 | -0.802971 | 4.36E-49 | -1.69E-46 |
MS.gene053542 | MS.gene90536 | -0.813862 | 2.06E-51 | -1.69E-46 |
MS.gene054004 | MS.gene90536 | -0.835759 | 1.39E-56 | -1.69E-46 |
MS.gene054142 | MS.gene90536 | -0.814886 | 1.23E-51 | -1.69E-46 |
MS.gene055220 | MS.gene90536 | -0.810441 | 1.15E-50 | -1.69E-46 |
MS.gene055221 | MS.gene90536 | -0.821096 | 4.84E-53 | -1.69E-46 |
MS.gene055513 | MS.gene90536 | -0.829303 | 5.55E-55 | -1.69E-46 |
MS.gene055765 | MS.gene90536 | -0.80137 | 9.30E-49 | -1.69E-46 |
MS.gene056181 | MS.gene90536 | -0.80152 | 8.66E-49 | -1.69E-46 |
MS.gene056699 | MS.gene90536 | -0.810277 | 1.25E-50 | -1.69E-46 |
MS.gene057082 | MS.gene90536 | -0.817 | 4.14E-52 | -1.69E-46 |
MS.gene057102 | MS.gene90536 | -0.825723 | 4.01E-54 | -1.69E-46 |
MS.gene058149 | MS.gene90536 | -0.82328 | 1.51E-53 | -1.69E-46 |
MS.gene05859 | MS.gene90536 | -0.801375 | 9.28E-49 | -1.69E-46 |
MS.gene05860 | MS.gene90536 | -0.80584 | 1.10E-49 | -1.69E-46 |
MS.gene059146 | MS.gene90536 | -0.806904 | 6.56E-50 | -1.69E-46 |
MS.gene059778 | MS.gene90536 | -0.877498 | 5.99E-69 | -1.69E-46 |
MS.gene05985 | MS.gene90536 | 0.820589 | 6.33E-53 | -1.69E-46 |
MS.gene060342 | MS.gene90536 | 0.820236 | 7.63E-53 | -1.69E-46 |
MS.gene060343 | MS.gene90536 | 0.835203 | 1.92E-56 | -1.69E-46 |
MS.gene060522 | MS.gene90536 | -0.812502 | 4.10E-51 | -1.69E-46 |
MS.gene060933 | MS.gene90536 | -0.818784 | 1.64E-52 | -1.69E-46 |
MS.gene060935 | MS.gene90536 | -0.806114 | 9.63E-50 | -1.69E-46 |
MS.gene060937 | MS.gene90536 | -0.821885 | 3.18E-53 | -1.69E-46 |
MS.gene061100 | MS.gene90536 | -0.855419 | 6.39E-62 | -1.69E-46 |
MS.gene061160 | MS.gene90536 | -0.806189 | 9.28E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90536.t1 | MTR_2g461260 | 97.973 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 0.0 | 588 |
MS.gene90536.t1 | MTR_4g073650 | 27.350 | 234 | 111 | 8 | 29 | 247 | 17 | 206 | 1.70e-18 | 82.8 |
MS.gene90536.t1 | MTR_1g117010 | 28.049 | 246 | 115 | 10 | 42 | 287 | 61 | 244 | 1.12e-16 | 78.2 |
MS.gene90536.t1 | MTR_1g117010 | 28.049 | 246 | 115 | 10 | 42 | 287 | 61 | 244 | 1.12e-16 | 78.2 |
MS.gene90536.t1 | MTR_1g085560 | 26.638 | 229 | 139 | 7 | 26 | 244 | 25 | 234 | 7.76e-16 | 75.9 |
MS.gene90536.t1 | MTR_7g110980 | 30.000 | 150 | 86 | 6 | 91 | 240 | 109 | 239 | 5.56e-15 | 73.6 |
MS.gene90536.t1 | MTR_3g070500 | 28.846 | 156 | 89 | 6 | 87 | 237 | 73 | 211 | 1.19e-13 | 69.3 |
MS.gene90536.t1 | MTR_3g463900 | 28.931 | 159 | 85 | 6 | 87 | 237 | 43 | 181 | 3.51e-13 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90536.t1 | AT5G35100 | 63.604 | 283 | 90 | 6 | 19 | 296 | 16 | 290 | 4.54e-107 | 313 |
MS.gene90536.t1 | AT5G35100 | 63.604 | 283 | 90 | 6 | 19 | 296 | 16 | 290 | 4.54e-107 | 313 |
MS.gene90536.t1 | AT5G35100 | 56.429 | 280 | 79 | 5 | 19 | 296 | 7 | 245 | 1.81e-89 | 266 |
MS.gene90536.t1 | AT5G13120 | 26.122 | 245 | 119 | 10 | 40 | 284 | 68 | 250 | 1.10e-14 | 72.8 |
MS.gene90536.t1 | AT5G13120 | 26.122 | 245 | 119 | 10 | 40 | 284 | 72 | 254 | 1.23e-14 | 72.8 |
MS.gene90536.t1 | AT2G29960 | 29.560 | 159 | 84 | 6 | 87 | 237 | 41 | 179 | 2.50e-14 | 70.9 |
MS.gene90536.t1 | AT2G29960 | 29.560 | 159 | 84 | 6 | 87 | 237 | 41 | 179 | 2.50e-14 | 70.9 |
MS.gene90536.t1 | AT4G34960 | 25.000 | 224 | 120 | 9 | 35 | 247 | 21 | 207 | 2.91e-14 | 70.9 |
MS.gene90536.t1 | AT3G55920 | 29.139 | 151 | 85 | 6 | 92 | 237 | 73 | 206 | 1.44e-13 | 69.3 |
MS.gene90536.t1 | AT5G58710 | 28.125 | 160 | 85 | 7 | 87 | 237 | 44 | 182 | 1.63e-13 | 68.6 |
MS.gene90536.t1 | AT3G62030 | 22.059 | 204 | 120 | 6 | 37 | 240 | 73 | 237 | 6.32e-13 | 67.8 |
MS.gene90536.t1 | AT3G62030 | 22.632 | 190 | 108 | 6 | 51 | 240 | 88 | 238 | 2.07e-12 | 66.2 |
MS.gene90536.t1 | AT3G56070 | 27.711 | 166 | 90 | 7 | 92 | 247 | 18 | 163 | 2.25e-12 | 64.7 |
MS.gene90536.t1 | AT3G56070 | 27.711 | 166 | 90 | 7 | 92 | 247 | 18 | 163 | 2.25e-12 | 64.7 |
MS.gene90536.t1 | AT3G62030 | 22.632 | 190 | 108 | 6 | 51 | 240 | 141 | 291 | 4.88e-12 | 65.9 |
Find 128 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGGTGGTTGTTGGGTTA+TGG | 0.169130 | 2.1:-40805992 | None:intergenic |
AACTCAACATTCCTGTATTC+AGG | 0.224071 | 2.1:-40806567 | None:intergenic |
TCCAAATGGCGCGAGCATTC+TGG | 0.230009 | 2.1:-40808624 | None:intergenic |
TGAAGCGGAGGAGGAGAGGG+AGG | 0.264086 | 2.1:-40806103 | None:intergenic |
AAGCGGAGGAGGAGAGGGAG+GGG | 0.264419 | 2.1:-40806101 | None:intergenic |
ATTCAGCCAAGTCATTAAAT+TGG | 0.265328 | 2.1:-40808582 | None:intergenic |
GATAACAAGAATATTGTCTT+TGG | 0.278201 | 2.1:+40806627 | MS.gene90536:CDS |
GTGATGGTGGGTTTGAGAAT+TGG | 0.279398 | 2.1:-40806033 | None:intergenic |
GGGGAAGGTGAGTGTGGTGG+TGG | 0.282149 | 2.1:-40806082 | None:intergenic |
AGGGGAGTGGTGGTGGTTGT+TGG | 0.288314 | 2.1:-40805999 | None:intergenic |
TGATGGTGGGTTTGAGAATT+GGG | 0.311880 | 2.1:-40806032 | None:intergenic |
CCAGGTCAGTACTTTCTTGC+TGG | 0.314895 | 2.1:+40806381 | MS.gene90536:CDS |
CCCAGAATGCTCGCGCCATT+TGG | 0.315725 | 2.1:+40808623 | MS.gene90536:CDS |
TGGTGGAGAGAGGGGAGTGG+TGG | 0.336476 | 2.1:-40806009 | None:intergenic |
TTGTAGGAGGAAGATGAATT+AGG | 0.337127 | 2.1:-40806333 | None:intergenic |
TGTCACCGAGGGTGCGATTT+GGG | 0.340196 | 2.1:-40806197 | None:intergenic |
CGTCAGGGTCGTCCTGAAAA+AGG | 0.349200 | 2.1:+40806405 | MS.gene90536:CDS |
CGTTGTTTCGCTTTCGCTCT+CGG | 0.349428 | 2.1:+40806512 | MS.gene90536:CDS |
GAAGGTGAGTGTGGTGGTGG+TGG | 0.354143 | 2.1:-40806079 | None:intergenic |
GTACTTTCTTGCTGGACGTC+AGG | 0.355854 | 2.1:+40806389 | MS.gene90536:CDS |
CATCACCGACCGTATCTTCA+TGG | 0.358426 | 2.1:+40806146 | MS.gene90536:CDS |
TGGAGAGAGGGGAGTGGTGG+TGG | 0.359542 | 2.1:-40806006 | None:intergenic |
GAGGGAGGGGAAGGTGAGTG+TGG | 0.362666 | 2.1:-40806088 | None:intergenic |
CCAAATGGCGCGAGCATTCT+GGG | 0.363577 | 2.1:-40808623 | None:intergenic |
GAGAATTGGGTGGTGGAGAG+AGG | 0.373639 | 2.1:-40806019 | None:intergenic |
GCGATTTGGGAGGTAATAGT+TGG | 0.380387 | 2.1:-40806184 | None:intergenic |
GGGGAGTGGTGGTGGTTGTT+GGG | 0.382400 | 2.1:-40805998 | None:intergenic |
GGAGGAGGAGAGGGAGGGGA+AGG | 0.386644 | 2.1:-40806097 | None:intergenic |
ATGGTGGGGTTTGGTGGTTG+TGG | 0.391884 | 2.1:-40806126 | None:intergenic |
CGGTCGGTGATGGTGGGGTT+TGG | 0.394720 | 2.1:-40806135 | None:intergenic |
AGCGAAAGCGAAACAACGCC+GGG | 0.400381 | 2.1:-40806507 | None:intergenic |
GTGTCACCGAGGGTGCGATT+TGG | 0.403005 | 2.1:-40806198 | None:intergenic |
GGAGGGGAAGGTGAGTGTGG+TGG | 0.404648 | 2.1:-40806085 | None:intergenic |
GAGTGAGCGGCGGGTGATGG+TGG | 0.412527 | 2.1:-40806046 | None:intergenic |
TGGTGAAGCGGAGGAGGAGA+GGG | 0.413678 | 2.1:-40806106 | None:intergenic |
GTCTTTGGAACCGTGCTTGA+AGG | 0.413916 | 2.1:+40806642 | MS.gene90536:CDS |
AGAATTGGGTGGTGGAGAGA+GGG | 0.420473 | 2.1:-40806018 | None:intergenic |
TGCGTAAGCGCAAACGCCTT+AGG | 0.421002 | 2.1:-40806477 | None:intergenic |
GAGGAGTGAGCGGCGGGTGA+TGG | 0.428601 | 2.1:-40806049 | None:intergenic |
GAAGCGGAGGAGGAGAGGGA+GGG | 0.436968 | 2.1:-40806102 | None:intergenic |
TTACTCGGTCGCGTCATTCT+CGG | 0.439943 | 2.1:+40806249 | MS.gene90536:CDS |
GGGTGGTGGAGAGAGGGGAG+TGG | 0.441687 | 2.1:-40806012 | None:intergenic |
ATGCTCGCGCCATTTGGAAT+AGG | 0.449242 | 2.1:+40808629 | MS.gene90536:CDS |
GAGAATGACGCGACCGAGTA+AGG | 0.451654 | 2.1:-40806247 | None:intergenic |
TGGTGGTTGTTGGGTTATGG+AGG | 0.453657 | 2.1:-40805989 | None:intergenic |
TAAGGTGGAGTCGGAGCATA+AGG | 0.453838 | 2.1:-40806229 | None:intergenic |
TGCTCCGACTCCACCTTACT+CGG | 0.454011 | 2.1:+40806234 | MS.gene90536:CDS |
GTGGTGAAGCGGAGGAGGAG+AGG | 0.454371 | 2.1:-40806107 | None:intergenic |
GTGGACGAATGTGTTCTTGT+AGG | 0.459351 | 2.1:-40806349 | None:intergenic |
TCAAGTTTGACCCTGAATAC+AGG | 0.461819 | 2.1:+40806556 | MS.gene90536:CDS |
CGATTTGGGAGGTAATAGTT+GGG | 0.464305 | 2.1:-40806183 | None:intergenic |
GCGCTTACGCATTCTCGCCC+CGG | 0.469264 | 2.1:+40806489 | MS.gene90536:CDS |
ACTCAACATTCCTGTATTCA+GGG | 0.469446 | 2.1:-40806566 | None:intergenic |
GCGTAAGCGCAAACGCCTTA+GGG | 0.472386 | 2.1:-40806476 | None:intergenic |
AATTCGCCAATTTAATGACT+TGG | 0.479431 | 2.1:+40808576 | MS.gene90536:CDS |
GGAGGTAATAGTTGGGGCAG+AGG | 0.480555 | 2.1:-40806176 | None:intergenic |
TACTTTCTTGCTGGACGTCA+GGG | 0.483519 | 2.1:+40806390 | MS.gene90536:CDS |
GAAGATACGGTCGGTGATGG+TGG | 0.484265 | 2.1:-40806142 | None:intergenic |
TCGGTGATGGTGGGGTTTGG+TGG | 0.486531 | 2.1:-40806132 | None:intergenic |
GTTTGGTGGTTGTGGTGAAG+CGG | 0.489298 | 2.1:-40806118 | None:intergenic |
CTAATATAAATTGTGGTAAG+AGG | 0.490632 | 2.1:-40808652 | None:intergenic |
CGCGTCATTCTCGGACTCTA+CGG | 0.492773 | 2.1:+40806258 | MS.gene90536:CDS |
TCGTTCACCTGGTTGGTAAG+TGG | 0.493192 | 2.1:-40808554 | None:intergenic |
TGGTTGTGGTGAAGCGGAGG+AGG | 0.499350 | 2.1:-40806112 | None:intergenic |
TGTGAGGAGGAGTGAGCGGC+GGG | 0.504045 | 2.1:-40806055 | None:intergenic |
CGTTCACCTGGTTGGTAAGT+GGG | 0.504144 | 2.1:-40808553 | None:intergenic |
AGTGAGCGGCGGGTGATGGT+GGG | 0.505406 | 2.1:-40806045 | None:intergenic |
GAATTGGGTGGTGGAGAGAG+GGG | 0.508964 | 2.1:-40806017 | None:intergenic |
TGGTGGTTGTGGTGAAGCGG+AGG | 0.509114 | 2.1:-40806115 | None:intergenic |
CCGTTTCAATGTTGCGTGGG+AGG | 0.513215 | 2.1:-40806449 | None:intergenic |
GGGAGAGAAGGTGTGAGGGA+AGG | 0.513470 | 2.1:-40808703 | None:intergenic |
TTAAGGGAGAGAAGGTGTGA+GGG | 0.513923 | 2.1:-40808707 | None:intergenic |
ATTAGGAGAGGAAATGCAAA+GGG | 0.515231 | 2.1:-40806316 | None:intergenic |
AAGATACGGTCGGTGATGGT+GGG | 0.515609 | 2.1:-40806141 | None:intergenic |
GGCGAATTCGTTCACCTGGT+TGG | 0.521823 | 2.1:-40808561 | None:intergenic |
TACCTCCCAAATCGCACCCT+CGG | 0.528789 | 2.1:+40806192 | MS.gene90536:CDS |
GAGCGAAAGCGAAACAACGC+CGG | 0.529815 | 2.1:-40806508 | None:intergenic |
GTGTGGTGGTGGTGGATGTG+AGG | 0.530684 | 2.1:-40806071 | None:intergenic |
CAATTTATATTAGTGACTGT+GGG | 0.530711 | 2.1:+40808662 | MS.gene90536:CDS |
TGGGTTTGAGAATTGGGTGG+TGG | 0.538502 | 2.1:-40806026 | None:intergenic |
AATTGGCGAATTCGTTCACC+TGG | 0.540152 | 2.1:-40808565 | None:intergenic |
GAAAGAAGTTAAGGGAGAGA+AGG | 0.540359 | 2.1:-40808715 | None:intergenic |
TGGTGGTGGTGGATGTGAGG+AGG | 0.541066 | 2.1:-40806068 | None:intergenic |
CATTGAAACGGTTGACCCTA+AGG | 0.542502 | 2.1:+40806461 | MS.gene90536:CDS |
GTTAAGGGAGAGAAGGTGTG+AGG | 0.547655 | 2.1:-40808708 | None:intergenic |
GGCTGAAGTCCATGAAGATA+CGG | 0.548312 | 2.1:-40806155 | None:intergenic |
CATGAAGATACGGTCGGTGA+TGG | 0.548936 | 2.1:-40806145 | None:intergenic |
GGTAAGAGGCCTATTCCAAA+TGG | 0.553319 | 2.1:-40808638 | None:intergenic |
TCAAGCTGAGGACAAGGTCC+AGG | 0.559269 | 2.1:-40806606 | None:intergenic |
CAACCGTTTCAATGTTGCGT+GGG | 0.563080 | 2.1:-40806452 | None:intergenic |
ATGTGAGGAGGAGTGAGCGG+CGG | 0.568201 | 2.1:-40806056 | None:intergenic |
CCTCCCACGCAACATTGAAA+CGG | 0.568499 | 2.1:+40806449 | MS.gene90536:CDS |
ACAATTTATATTAGTGACTG+TGG | 0.569563 | 2.1:+40808661 | MS.gene90536:CDS |
GTCGGAGCATAAGGTGGAGA+TGG | 0.572449 | 2.1:-40806220 | None:intergenic |
TTGTTATCAAGCTGAGGACA+AGG | 0.573700 | 2.1:-40806612 | None:intergenic |
CAAGAACACATTCGTCCACA+AGG | 0.583521 | 2.1:+40806353 | MS.gene90536:CDS |
GGAGGAAGATGAATTAGGAG+AGG | 0.585467 | 2.1:-40806328 | None:intergenic |
TGGTGGGTTTGAGAATTGGG+TGG | 0.585572 | 2.1:-40806029 | None:intergenic |
AATTAGGAGAGGAAATGCAA+AGG | 0.593113 | 2.1:-40806317 | None:intergenic |
GAGTTTGTTACCTTCAAGCA+CGG | 0.596930 | 2.1:-40806652 | None:intergenic |
CCAGCAAGAAAGTACTGACC+TGG | 0.603788 | 2.1:-40806381 | None:intergenic |
GGTGGAGTCGGAGCATAAGG+TGG | 0.604418 | 2.1:-40806226 | None:intergenic |
AGATACGGTCGGTGATGGTG+GGG | 0.606920 | 2.1:-40806140 | None:intergenic |
GGTGGAGATGGTGTCACCGA+GGG | 0.608559 | 2.1:-40806208 | None:intergenic |
TCAACCGTTTCAATGTTGCG+TGG | 0.611186 | 2.1:-40806453 | None:intergenic |
TAGTGACTGTGGGGTGCTAG+AGG | 0.614129 | 2.1:+40808672 | MS.gene90536:CDS |
GTAAGTGGGAGTTGACGCTA+TGG | 0.616115 | 2.1:-40808539 | None:intergenic |
TGGATGTGAGGAGGAGTGAG+CGG | 0.619737 | 2.1:-40806059 | None:intergenic |
ATATTCTTGTTATCAAGCTG+AGG | 0.620954 | 2.1:-40806618 | None:intergenic |
TCAACTCCCACTTACCAACC+AGG | 0.622301 | 2.1:+40808547 | MS.gene90536:CDS |
AGGACAAGGTCCAGGACCAG+TGG | 0.626246 | 2.1:-40806598 | None:intergenic |
ATGTTGCGTGGGAGGTGACG+AGG | 0.627365 | 2.1:-40806441 | None:intergenic |
TTGAAATTTGAGACTGTGCG+TGG | 0.632219 | 2.1:-40806291 | None:intergenic |
TTGCGTGGGAGGTGACGAGG+AGG | 0.634472 | 2.1:-40806438 | None:intergenic |
TTGAGACTGTGCGTGGAACG+AGG | 0.635278 | 2.1:-40806284 | None:intergenic |
GCGACCGAGTAAGGTGGAGT+CGG | 0.639635 | 2.1:-40806238 | None:intergenic |
GATTTGGGAGGTAATAGTTG+GGG | 0.640976 | 2.1:-40806182 | None:intergenic |
ACTGACCTGGTAAAACCTTG+TGG | 0.646621 | 2.1:-40806368 | None:intergenic |
TGCGTGGGAGGTGACGAGGA+GGG | 0.647096 | 2.1:-40806437 | None:intergenic |
ACAGTCACTAATATAAATTG+TGG | 0.650557 | 2.1:-40808659 | None:intergenic |
CACCGAGGGTGCGATTTGGG+AGG | 0.650888 | 2.1:-40806194 | None:intergenic |
GTGGGAGGTGACGAGGAGGG+CGG | 0.652018 | 2.1:-40806434 | None:intergenic |
AATGACGCGACCGAGTAAGG+TGG | 0.658935 | 2.1:-40806244 | None:intergenic |
GACGAATGTGTTCTTGTAGG+AGG | 0.659670 | 2.1:-40806346 | None:intergenic |
AATTTATATTAGTGACTGTG+GGG | 0.667281 | 2.1:+40808663 | MS.gene90536:CDS |
GAAGTCCATGAAGATACGGT+CGG | 0.671501 | 2.1:-40806151 | None:intergenic |
GCGAAAGCGAAACAACGCCG+GGG | 0.709457 | 2.1:-40806506 | None:intergenic |
AGGTGGAGATGGTGTCACCG+AGG | 0.711362 | 2.1:-40806209 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTCCATATAATAAATTTAA+TGG | - | chr2.1:40807727-40807746 | None:intergenic | 10.0% |
!! | CATTGTATATAACAATATTA+CGG | + | chr2.1:40807030-40807049 | MS.gene90536:intron | 15.0% |
!! | TGACCATTAAATTTATTATA+TGG | + | chr2.1:40807721-40807740 | MS.gene90536:intron | 15.0% |
!! | AAAGTCAAAACTATTTAACA+TGG | - | chr2.1:40808335-40808354 | None:intergenic | 20.0% |
!! | AATTTATTATATGGAAACCA+TGG | + | chr2.1:40807730-40807749 | MS.gene90536:intron | 20.0% |
!! | ACATTTAACTATATTCTCAA+CGG | - | chr2.1:40807290-40807309 | None:intergenic | 20.0% |
!! | TGTAGTATATGGAATAATTT+AGG | + | chr2.1:40806734-40806753 | MS.gene90536:intron | 20.0% |
!!! | GAAATATTTGATCTCTTTTT+GGG | + | chr2.1:40808410-40808429 | MS.gene90536:intron | 20.0% |
!!! | GGTAGCATTTTAAAAAAATT+GGG | + | chr2.1:40806873-40806892 | MS.gene90536:intron | 20.0% |
!!! | TGAAATATTTGATCTCTTTT+TGG | + | chr2.1:40808409-40808428 | MS.gene90536:intron | 20.0% |
!!! | TGGTAGCATTTTAAAAAAAT+TGG | + | chr2.1:40806872-40806891 | MS.gene90536:intron | 20.0% |
!!! | TTTGTAAAAGTACTACAAAT+CGG | - | chr2.1:40807593-40807612 | None:intergenic | 20.0% |
!!! | TTTGTAGTACTTTTACAAAT+TGG | + | chr2.1:40807594-40807613 | MS.gene90536:intron | 20.0% |
! | AAAAACCCATAGTAAAAAAC+TGG | + | chr2.1:40807694-40807713 | MS.gene90536:intron | 25.0% |
! | AATTTATATTAGTGACTGTG+GGG | + | chr2.1:40808663-40808682 | MS.gene90536:CDS | 25.0% |
! | ACAATTTATATTAGTGACTG+TGG | + | chr2.1:40808661-40808680 | MS.gene90536:CDS | 25.0% |
! | ACAGTCACTAATATAAATTG+TGG | - | chr2.1:40808662-40808681 | None:intergenic | 25.0% |
! | ATAATCTTTGTAACTAAACC+TGG | + | chr2.1:40808236-40808255 | MS.gene90536:intron | 25.0% |
! | ATTATTCCATATACTACACA+AGG | - | chr2.1:40806732-40806751 | None:intergenic | 25.0% |
! | CAATTTATATTAGTGACTGT+GGG | + | chr2.1:40808662-40808681 | MS.gene90536:CDS | 25.0% |
! | CTAATATAAATTGTGGTAAG+AGG | - | chr2.1:40808655-40808674 | None:intergenic | 25.0% |
! | GAGGAGGATTTATATATATA+AGG | - | chr2.1:40807864-40807883 | None:intergenic | 25.0% |
! | GATAACAAGAATATTGTCTT+TGG | + | chr2.1:40806627-40806646 | MS.gene90536:CDS | 25.0% |
! | GTTGAGAATATAGTTAAATG+TGG | + | chr2.1:40807289-40807308 | MS.gene90536:intron | 25.0% |
! | TTATTAAATGGCAATGGTAA+TGG | - | chr2.1:40807265-40807284 | None:intergenic | 25.0% |
! | TTCCAGTTTAAACATTGAAA+AGG | - | chr2.1:40807413-40807432 | None:intergenic | 25.0% |
!! | AGGATTGAGTTATTTCAATT+TGG | - | chr2.1:40806712-40806731 | None:intergenic | 25.0% |
!! | TCAGTGATTTTCTACAAATT+GGG | - | chr2.1:40807636-40807655 | None:intergenic | 25.0% |
AAAACATGACCTCTTACTAA+TGG | - | chr2.1:40808306-40808325 | None:intergenic | 30.0% | |
AAACATGACCTCTTACTAAT+GGG | - | chr2.1:40808305-40808324 | None:intergenic | 30.0% | |
AACTTTAAACAATAGAGAGG+AGG | - | chr2.1:40807880-40807899 | None:intergenic | 30.0% | |
AATTCGCCAATTTAATGACT+TGG | + | chr2.1:40808576-40808595 | MS.gene90536:CDS | 30.0% | |
AGCTTAGGATTCATGAATAT+AGG | + | chr2.1:40807002-40807021 | MS.gene90536:intron | 30.0% | |
AGGAACTTTAAACAATAGAG+AGG | - | chr2.1:40807883-40807902 | None:intergenic | 30.0% | |
AGTAAAGAGAATTGAGAACT+AGG | + | chr2.1:40808134-40808153 | MS.gene90536:intron | 30.0% | |
AGTTGTAAAAATTTCTGCCA+TGG | + | chr2.1:40807239-40807258 | MS.gene90536:intron | 30.0% | |
ATTCAGCCAAGTCATTAAAT+TGG | - | chr2.1:40808585-40808604 | None:intergenic | 30.0% | |
CACTATGTCATAATAGAAGA+CGG | - | chr2.1:40807765-40807784 | None:intergenic | 30.0% | |
GTCAAAACTATTTAACATGG+AGG | - | chr2.1:40808332-40808351 | None:intergenic | 30.0% | |
TAACATGTGGATACACAAAA+TGG | - | chr2.1:40808372-40808391 | None:intergenic | 30.0% | |
TATGCTACTCTTGAAGTATA+GGG | - | chr2.1:40808089-40808108 | None:intergenic | 30.0% | |
TCAATGTTTAAACTGGAAAC+TGG | + | chr2.1:40807415-40807434 | MS.gene90536:intron | 30.0% | |
TCGTGCATAAAACTGTTATT+TGG | - | chr2.1:40806942-40806961 | None:intergenic | 30.0% | |
TCTAGTTGAATCTAATTGCA+GGG | + | chr2.1:40808500-40808519 | MS.gene90536:intron | 30.0% | |
TCTCAATCATACCAAATGAA+AGG | - | chr2.1:40807128-40807147 | None:intergenic | 30.0% | |
TCTCAATTCTCTTTACTACA+TGG | - | chr2.1:40808131-40808150 | None:intergenic | 30.0% | |
! | ATATTCTTGTTATCAAGCTG+AGG | - | chr2.1:40806621-40806640 | None:intergenic | 30.0% |
! | ATTGTTTAAAGTTCCTGATG+TGG | + | chr2.1:40807887-40807906 | MS.gene90536:intron | 30.0% |
! | CACCTTTTCAATGTTTAAAC+TGG | + | chr2.1:40807408-40807427 | MS.gene90536:intron | 30.0% |
! | GTCAGTGATTTTCTACAAAT+TGG | - | chr2.1:40807637-40807656 | None:intergenic | 30.0% |
! | TTCTAGTTGAATCTAATTGC+AGG | + | chr2.1:40808499-40808518 | MS.gene90536:intron | 30.0% |
! | TTGTTTAAAGTTCCTGATGT+GGG | + | chr2.1:40807888-40807907 | MS.gene90536:intron | 30.0% |
! | TTTATGCACGATTAACTTGA+AGG | + | chr2.1:40806951-40806970 | MS.gene90536:intron | 30.0% |
! | TTTTTCATAGTCATTAAGGC+TGG | - | chr2.1:40807678-40807697 | None:intergenic | 30.0% |
!! | GTTTATAAACCGATTTTGCA+GGG | - | chr2.1:40806914-40806933 | None:intergenic | 30.0% |
!! | TCTTTTTGGGCTAGATTTTA+TGG | + | chr2.1:40808423-40808442 | MS.gene90536:intron | 30.0% |
!! | TGTTTATAAACCGATTTTGC+AGG | - | chr2.1:40806915-40806934 | None:intergenic | 30.0% |
!! | TTCTCAACGGTGTTATTAAA+TGG | - | chr2.1:40807277-40807296 | None:intergenic | 30.0% |
!!! | AATGACTTGGCTGAATTTTT+TGG | + | chr2.1:40808589-40808608 | MS.gene90536:CDS | 30.0% |
!!! | ACAGACCAGTTTTTTACTAT+GGG | - | chr2.1:40807702-40807721 | None:intergenic | 30.0% |
!!! | GGGTTTTTTCATAGTCATTA+AGG | - | chr2.1:40807682-40807701 | None:intergenic | 30.0% |
!!! | TGAATTTTTTGGAGACGAAA+GGG | + | chr2.1:40808600-40808619 | MS.gene90536:CDS | 30.0% |
AAACTCCGCAATATAAACCA+TGG | + | chr2.1:40807174-40807193 | MS.gene90536:intron | 35.0% | |
AACGAATCTTAGATATGCTG+TGG | + | chr2.1:40806852-40806871 | MS.gene90536:intron | 35.0% | |
AACTCAACATTCCTGTATTC+AGG | - | chr2.1:40806570-40806589 | None:intergenic | 35.0% | |
AATTAGGAGAGGAAATGCAA+AGG | - | chr2.1:40806320-40806339 | None:intergenic | 35.0% | |
ACTCAACATTCCTGTATTCA+GGG | - | chr2.1:40806569-40806588 | None:intergenic | 35.0% | |
ATGATTGAGAATCAGTGTTG+TGG | + | chr2.1:40807138-40807157 | MS.gene90536:intron | 35.0% | |
ATGCTCTCAACTTTCAATGT+TGG | + | chr2.1:40807959-40807978 | MS.gene90536:intron | 35.0% | |
ATTAGGAGAGGAAATGCAAA+GGG | - | chr2.1:40806319-40806338 | None:intergenic | 35.0% | |
CTCAATCCTTGTGTAGTATA+TGG | + | chr2.1:40806723-40806742 | MS.gene90536:intron | 35.0% | |
CTGAAAACAACTCTAACATG+TGG | - | chr2.1:40808385-40808404 | None:intergenic | 35.0% | |
GATTCTAGTCTCAAAATGAG+TGG | + | chr2.1:40807518-40807537 | MS.gene90536:intron | 35.0% | |
GTATGCTACTCTTGAAGTAT+AGG | - | chr2.1:40808090-40808109 | None:intergenic | 35.0% | |
GTTTCAAACACAAGAAGCTT+AGG | + | chr2.1:40806987-40807006 | MS.gene90536:intron | 35.0% | |
TAGAAGCTGAGCAATGTAAT+TGG | - | chr2.1:40808484-40808503 | None:intergenic | 35.0% | |
TGAGAACTAGGTTACAATGA+TGG | + | chr2.1:40808146-40808165 | MS.gene90536:intron | 35.0% | |
TGTTAAAATAGTCCCACATC+AGG | - | chr2.1:40807903-40807922 | None:intergenic | 35.0% | |
TTGTAGGAGGAAGATGAATT+AGG | - | chr2.1:40806336-40806355 | None:intergenic | 35.0% | |
TTTACTACATGGTACGAGTT+CGG | - | chr2.1:40808120-40808139 | None:intergenic | 35.0% | |
! | GGTTGATGTACTCTAAATTG+TGG | + | chr2.1:40807310-40807329 | MS.gene90536:intron | 35.0% |
! | GTTGAGTTTTTAATCACCAC+TGG | + | chr2.1:40806582-40806601 | MS.gene90536:CDS | 35.0% |
! | TCTTGAAGTATAGGGTACTT+GGG | - | chr2.1:40808081-40808100 | None:intergenic | 35.0% |
! | TGGTTTGTCACAGTATCATA+AGG | + | chr2.1:40808166-40808185 | MS.gene90536:intron | 35.0% |
! | TGTTACCGATTGTTTGATAG+CGG | + | chr2.1:40806822-40806841 | MS.gene90536:intron | 35.0% |
!! | ACGGTGTTATTAAATGGCAA+TGG | - | chr2.1:40807271-40807290 | None:intergenic | 35.0% |
!!! | CACAGACCAGTTTTTTACTA+TGG | - | chr2.1:40807703-40807722 | None:intergenic | 35.0% |
!!! | CTGAATTTTTTGGAGACGAA+AGG | + | chr2.1:40808599-40808618 | MS.gene90536:CDS | 35.0% |
AAAAGAGTGACACTGAGTGT+TGG | + | chr2.1:40807470-40807489 | MS.gene90536:intron | 40.0% | |
AAAGGTAGCCAACCACAATT+TGG | - | chr2.1:40807370-40807389 | None:intergenic | 40.0% | |
AATATAAACCATGGCAGGCA+AGG | + | chr2.1:40807183-40807202 | MS.gene90536:intron | 40.0% | |
ACAAATCGGTACACACAAAC+TGG | - | chr2.1:40807579-40807598 | None:intergenic | 40.0% | |
AGATACCTTTGTAGGAGATG+AGG | + | chr2.1:40807438-40807457 | MS.gene90536:intron | 40.0% | |
AGCATTGCTGTCAAAAACCT+TGG | + | chr2.1:40807334-40807353 | MS.gene90536:intron | 40.0% | |
AGCCAACCACAATTTGGATT+GGG | - | chr2.1:40807364-40807383 | None:intergenic | 40.0% | |
AGTGGTGACATAATTCACCA+GGG | + | chr2.1:40807536-40807555 | MS.gene90536:intron | 40.0% | |
ATATAAACCATGGCAGGCAA+GGG | + | chr2.1:40807184-40807203 | MS.gene90536:intron | 40.0% | |
ATCAGTGTTGTGGTGATTGA+AGG | + | chr2.1:40807148-40807167 | MS.gene90536:intron | 40.0% | |
ATTCTCCTCATCTCCTACAA+AGG | - | chr2.1:40807446-40807465 | None:intergenic | 40.0% | |
CAAACTCAACCCTGCAAAAT+CGG | + | chr2.1:40806902-40806921 | MS.gene90536:intron | 40.0% | |
CAGAACCAGGTTTCGAAAAA+AGG | - | chr2.1:40807388-40807407 | None:intergenic | 40.0% | |
GAAACTGGAGATACCTTTGT+AGG | + | chr2.1:40807430-40807449 | MS.gene90536:intron | 40.0% | |
GATTTGGGAGGTAATAGTTG+GGG | - | chr2.1:40806185-40806204 | None:intergenic | 40.0% | |
GGTCAAAAGCAGCAAAATCA+GGG | + | chr2.1:40807051-40807070 | MS.gene90536:intron | 40.0% | |
GTTGAATCTAATTGCAGGGT+TGG | + | chr2.1:40808504-40808523 | MS.gene90536:intron | 40.0% | |
TAGCCAACCACAATTTGGAT+TGG | - | chr2.1:40807365-40807384 | None:intergenic | 40.0% | |
TCAAGTTTGACCCTGAATAC+AGG | + | chr2.1:40806556-40806575 | MS.gene90536:CDS | 40.0% | |
TGTACTCTCCCATTAGTAAG+AGG | + | chr2.1:40808294-40808313 | MS.gene90536:intron | 40.0% | |
TTACTACATGGTACGAGTTC+GGG | - | chr2.1:40808119-40808138 | None:intergenic | 40.0% | |
TTGTTATCAAGCTGAGGACA+AGG | - | chr2.1:40806615-40806634 | None:intergenic | 40.0% | |
! | AAAAGCACAAACGTTTCACC+AGG | - | chr2.1:40808257-40808276 | None:intergenic | 40.0% |
! | AATTTGGATTGGGACATCCA+AGG | - | chr2.1:40807354-40807373 | None:intergenic | 40.0% |
! | CAAACTGGTTTCAGTTCTCA+AGG | - | chr2.1:40807564-40807583 | None:intergenic | 40.0% |
! | CGATTTGGGAGGTAATAGTT+GGG | - | chr2.1:40806186-40806205 | None:intergenic | 40.0% |
! | CTCTTGAAGTATAGGGTACT+TGG | - | chr2.1:40808082-40808101 | None:intergenic | 40.0% |
! | CTTGAAGTATAGGGTACTTG+GGG | - | chr2.1:40808080-40808099 | None:intergenic | 40.0% |
! | TTGAAATTTGAGACTGTGCG+TGG | - | chr2.1:40806294-40806313 | None:intergenic | 40.0% |
! | TTGAAGTATAGGGTACTTGG+GGG | - | chr2.1:40808079-40808098 | None:intergenic | 40.0% |
! | TTTTTAATCACCACTGGTCC+TGG | + | chr2.1:40806588-40806607 | MS.gene90536:CDS | 40.0% |
!! | GAGTTTGTTACCTTCAAGCA+CGG | - | chr2.1:40806655-40806674 | None:intergenic | 40.0% |
!! | TGATGGTGGGTTTGAGAATT+GGG | - | chr2.1:40806035-40806054 | None:intergenic | 40.0% |
AATTGGCGAATTCGTTCACC+TGG | - | chr2.1:40808568-40808587 | None:intergenic | 45.0% | |
ACTGACCTGGTAAAACCTTG+TGG | - | chr2.1:40806371-40806390 | None:intergenic | 45.0% | |
CAACCGTTTCAATGTTGCGT+GGG | - | chr2.1:40806455-40806474 | None:intergenic | 45.0% | |
CAAGAACACATTCGTCCACA+AGG | + | chr2.1:40806353-40806372 | MS.gene90536:CDS | 45.0% | |
CATTGAAACGGTTGACCCTA+AGG | + | chr2.1:40806461-40806480 | MS.gene90536:CDS | 45.0% | |
CGGTCAAAAGCAGCAAAATC+AGG | + | chr2.1:40807050-40807069 | MS.gene90536:intron | 45.0% | |
GAAGTCCATGAAGATACGGT+CGG | - | chr2.1:40806154-40806173 | None:intergenic | 45.0% | |
GACGAATGTGTTCTTGTAGG+AGG | - | chr2.1:40806349-40806368 | None:intergenic | 45.0% | |
GAGTGGTGACATAATTCACC+AGG | + | chr2.1:40807535-40807554 | MS.gene90536:intron | 45.0% | |
GCCTGCCATGGTTTATATTG+CGG | - | chr2.1:40807182-40807201 | None:intergenic | 45.0% | |
GCGTCTTAGCGAATTTGTGT+AGG | - | chr2.1:40807212-40807231 | None:intergenic | 45.0% | |
GGAGGAAGATGAATTAGGAG+AGG | - | chr2.1:40806331-40806350 | None:intergenic | 45.0% | |
GGATGTCCCAATCCAAATTG+TGG | + | chr2.1:40807355-40807374 | MS.gene90536:intron | 45.0% | |
GGCTGAAGTCCATGAAGATA+CGG | - | chr2.1:40806158-40806177 | None:intergenic | 45.0% | |
GGTAAGAGGCCTATTCCAAA+TGG | - | chr2.1:40808641-40808660 | None:intergenic | 45.0% | |
GTCAGCCGCTATCAAACAAT+CGG | - | chr2.1:40806830-40806849 | None:intergenic | 45.0% | |
GTCCCAATCCAAATTGTGGT+TGG | + | chr2.1:40807359-40807378 | MS.gene90536:intron | 45.0% | |
GTGGACGAATGTGTTCTTGT+AGG | - | chr2.1:40806352-40806371 | None:intergenic | 45.0% | |
TACTTTCTTGCTGGACGTCA+GGG | + | chr2.1:40806390-40806409 | MS.gene90536:CDS | 45.0% | |
TATAAACCATGGCAGGCAAG+GGG | + | chr2.1:40807185-40807204 | MS.gene90536:intron | 45.0% | |
TCAACCGTTTCAATGTTGCG+TGG | - | chr2.1:40806456-40806475 | None:intergenic | 45.0% | |
TCCGCAATATAAACCATGGC+AGG | + | chr2.1:40807178-40807197 | MS.gene90536:intron | 45.0% | |
TGCGTTGCGATCCTTTCATT+TGG | + | chr2.1:40807114-40807133 | MS.gene90536:intron | 45.0% | |
TGTCATAATAGAAGACGGCG+CGG | - | chr2.1:40807760-40807779 | None:intergenic | 45.0% | |
! | CATTGAAAAGGTGCAGAACC+AGG | - | chr2.1:40807401-40807420 | None:intergenic | 45.0% |
! | GCGATTTGGGAGGTAATAGT+TGG | - | chr2.1:40806187-40806206 | None:intergenic | 45.0% |
! | TGAAGTATAGGGTACTTGGG+GGG | - | chr2.1:40808078-40808097 | None:intergenic | 45.0% |
! | TTAAGGGAGAGAAGGTGTGA+GGG | - | chr2.1:40808710-40808729 | None:intergenic | 45.0% |
! | TTCGTCCACAAGGTTTTACC+AGG | + | chr2.1:40806363-40806382 | MS.gene90536:CDS | 45.0% |
!! | AATGGCAATGGTAATGGCCA+TGG | - | chr2.1:40807259-40807278 | None:intergenic | 45.0% |
!! | GGTATACACAGTTGGTTCGT+TGG | - | chr2.1:40808057-40808076 | None:intergenic | 45.0% |
!! | GTGATGGTGGGTTTGAGAAT+TGG | - | chr2.1:40806036-40806055 | None:intergenic | 45.0% |
!!! | GGCTACCTTTTTTCGAAACC+TGG | + | chr2.1:40807380-40807399 | MS.gene90536:intron | 45.0% |
CATCACCGACCGTATCTTCA+TGG | + | chr2.1:40806146-40806165 | MS.gene90536:CDS | 50.0% | |
CATGAAGATACGGTCGGTGA+TGG | - | chr2.1:40806148-40806167 | None:intergenic | 50.0% | |
CCAGGTCAGTACTTTCTTGC+TGG | + | chr2.1:40806381-40806400 | MS.gene90536:CDS | 50.0% | |
CCTCCCACGCAACATTGAAA+CGG | + | chr2.1:40806449-40806468 | MS.gene90536:CDS | 50.0% | |
CGCAATTCTCCTGTGTACGA+GGG | - | chr2.1:40806794-40806813 | None:intergenic | 50.0% | |
GTAAGTGGGAGTTGACGCTA+TGG | - | chr2.1:40808542-40808561 | None:intergenic | 50.0% | |
GTACTTTCTTGCTGGACGTC+AGG | + | chr2.1:40806389-40806408 | MS.gene90536:CDS | 50.0% | |
GTCATAATAGAAGACGGCGC+GGG | - | chr2.1:40807759-40807778 | None:intergenic | 50.0% | |
TAAGGTGGAGTCGGAGCATA+AGG | - | chr2.1:40806232-40806251 | None:intergenic | 50.0% | |
TCAACTCCCACTTACCAACC+AGG | + | chr2.1:40808547-40808566 | MS.gene90536:CDS | 50.0% | |
TGGGTTTGAGAATTGGGTGG+TGG | - | chr2.1:40806029-40806048 | None:intergenic | 50.0% | |
TGGTGGTTGTTGGGTTATGG+AGG | - | chr2.1:40805992-40806011 | None:intergenic | 50.0% | |
TTACTCGGTCGCGTCATTCT+CGG | + | chr2.1:40806249-40806268 | MS.gene90536:CDS | 50.0% | |
TTAGCATAGCCCTCGTACAC+AGG | + | chr2.1:40806782-40806801 | MS.gene90536:intron | 50.0% | |
! | AAGATACGGTCGGTGATGGT+GGG | - | chr2.1:40806144-40806163 | None:intergenic | 50.0% |
! | ACTTGGGGGGTATACACAGT+TGG | - | chr2.1:40808065-40808084 | None:intergenic | 50.0% |
! | ATGCTCGCGCCATTTGGAAT+AGG | + | chr2.1:40808629-40808648 | MS.gene90536:CDS | 50.0% |
! | CGTTGTTTCGCTTTCGCTCT+CGG | + | chr2.1:40806512-40806531 | MS.gene90536:CDS | 50.0% |
! | GTTTGGTGGTTGTGGTGAAG+CGG | - | chr2.1:40806121-40806140 | None:intergenic | 50.0% |
! | TTTCAGTTCTCAAGGCACCC+TGG | - | chr2.1:40807556-40807575 | None:intergenic | 50.0% |
!! | AGAATTGGGTGGTGGAGAGA+GGG | - | chr2.1:40806021-40806040 | None:intergenic | 50.0% |
!! | CCAGCAAGAAAGTACTGACC+TGG | - | chr2.1:40806384-40806403 | None:intergenic | 50.0% |
!! | CGTTCACCTGGTTGGTAAGT+GGG | - | chr2.1:40808556-40808575 | None:intergenic | 50.0% |
!! | GTCTTTGGAACCGTGCTTGA+AGG | + | chr2.1:40806642-40806661 | MS.gene90536:CDS | 50.0% |
!! | TCGTTCACCTGGTTGGTAAG+TGG | - | chr2.1:40808557-40808576 | None:intergenic | 50.0% |
!! | TGGTGGGTTTGAGAATTGGG+TGG | - | chr2.1:40806032-40806051 | None:intergenic | 50.0% |
!! | TGGTGGTGGTTGTTGGGTTA+TGG | - | chr2.1:40805995-40806014 | None:intergenic | 50.0% |
AATGACGCGACCGAGTAAGG+TGG | - | chr2.1:40806247-40806266 | None:intergenic | 55.0% | |
AGCGAAAGCGAAACAACGCC+GGG | - | chr2.1:40806510-40806529 | None:intergenic | 55.0% | |
CCAAATGGCGCGAGCATTCT+GGG | - | chr2.1:40808626-40808645 | None:intergenic | 55.0% | |
CCGTTTCAATGTTGCGTGGG+AGG | - | chr2.1:40806452-40806471 | None:intergenic | 55.0% | |
CGCGTCATTCTCGGACTCTA+CGG | + | chr2.1:40806258-40806277 | MS.gene90536:CDS | 55.0% | |
CGTCAGGGTCGTCCTGAAAA+AGG | + | chr2.1:40806405-40806424 | MS.gene90536:CDS | 55.0% | |
GAGAATGACGCGACCGAGTA+AGG | - | chr2.1:40806250-40806269 | None:intergenic | 55.0% | |
GAGCGAAAGCGAAACAACGC+CGG | - | chr2.1:40806511-40806530 | None:intergenic | 55.0% | |
GCGCAATTCTCCTGTGTACG+AGG | - | chr2.1:40806795-40806814 | None:intergenic | 55.0% | |
GCGTAAGCGCAAACGCCTTA+GGG | - | chr2.1:40806479-40806498 | None:intergenic | 55.0% | |
GGAGGTAATAGTTGGGGCAG+AGG | - | chr2.1:40806179-40806198 | None:intergenic | 55.0% | |
GGCGAATTCGTTCACCTGGT+TGG | - | chr2.1:40808564-40808583 | None:intergenic | 55.0% | |
GTCGGAGCATAAGGTGGAGA+TGG | - | chr2.1:40806223-40806242 | None:intergenic | 55.0% | |
TACCTCCCAAATCGCACCCT+CGG | + | chr2.1:40806192-40806211 | MS.gene90536:CDS | 55.0% | |
TCAAGCTGAGGACAAGGTCC+AGG | - | chr2.1:40806609-40806628 | None:intergenic | 55.0% | |
TCCAAATGGCGCGAGCATTC+TGG | - | chr2.1:40808627-40808646 | None:intergenic | 55.0% | |
TGCGTAAGCGCAAACGCCTT+AGG | - | chr2.1:40806480-40806499 | None:intergenic | 55.0% | |
TGCTCCGACTCCACCTTACT+CGG | + | chr2.1:40806234-40806253 | MS.gene90536:CDS | 55.0% | |
TGGATGTGAGGAGGAGTGAG+CGG | - | chr2.1:40806062-40806081 | None:intergenic | 55.0% | |
TTGAGACTGTGCGTGGAACG+AGG | - | chr2.1:40806287-40806306 | None:intergenic | 55.0% | |
! | AGATACGGTCGGTGATGGTG+GGG | - | chr2.1:40806143-40806162 | None:intergenic | 55.0% |
! | GAAGATACGGTCGGTGATGG+TGG | - | chr2.1:40806145-40806164 | None:intergenic | 55.0% |
! | TAGTGACTGTGGGGTGCTAG+AGG | + | chr2.1:40808672-40808691 | MS.gene90536:CDS | 55.0% |
! | TGTCACCGAGGGTGCGATTT+GGG | - | chr2.1:40806200-40806219 | None:intergenic | 55.0% |
!! | ATGGTGGGGTTTGGTGGTTG+TGG | - | chr2.1:40806129-40806148 | None:intergenic | 55.0% |
!! | GAATTGGGTGGTGGAGAGAG+GGG | - | chr2.1:40806020-40806039 | None:intergenic | 55.0% |
!! | GAGAATTGGGTGGTGGAGAG+AGG | - | chr2.1:40806022-40806041 | None:intergenic | 55.0% |
AGGACAAGGTCCAGGACCAG+TGG | - | chr2.1:40806601-40806620 | None:intergenic | 60.0% | |
ATGTGAGGAGGAGTGAGCGG+CGG | - | chr2.1:40806059-40806078 | None:intergenic | 60.0% | |
ATGTTGCGTGGGAGGTGACG+AGG | - | chr2.1:40806444-40806463 | None:intergenic | 60.0% | |
CCCAGAATGCTCGCGCCATT+TGG | + | chr2.1:40808623-40808642 | MS.gene90536:CDS | 60.0% | |
GCGAAAGCGAAACAACGCCG+GGG | - | chr2.1:40806509-40806528 | None:intergenic | 60.0% | |
GCGACCGAGTAAGGTGGAGT+CGG | - | chr2.1:40806241-40806260 | None:intergenic | 60.0% | |
GGGTCGTCCTGAAAAAGGCG+AGG | + | chr2.1:40806410-40806429 | MS.gene90536:CDS | 60.0% | |
GGTGGAGTCGGAGCATAAGG+TGG | - | chr2.1:40806229-40806248 | None:intergenic | 60.0% | |
TGGTGAAGCGGAGGAGGAGA+GGG | - | chr2.1:40806109-40806128 | None:intergenic | 60.0% | |
TGGTGGTTGTGGTGAAGCGG+AGG | - | chr2.1:40806118-40806137 | None:intergenic | 60.0% | |
TGGTTGTGGTGAAGCGGAGG+AGG | - | chr2.1:40806115-40806134 | None:intergenic | 60.0% | |
! | GGGAGAGAAGGTGTGAGGGA+AGG | - | chr2.1:40808706-40808725 | None:intergenic | 60.0% |
! | GTGTCACCGAGGGTGCGATT+TGG | - | chr2.1:40806201-40806220 | None:intergenic | 60.0% |
!! | AGGGGAGTGGTGGTGGTTGT+TGG | - | chr2.1:40806002-40806021 | None:intergenic | 60.0% |
!! | AGGTGGAGATGGTGTCACCG+AGG | - | chr2.1:40806212-40806231 | None:intergenic | 60.0% |
!! | GAAGGTGAGTGTGGTGGTGG+TGG | - | chr2.1:40806082-40806101 | None:intergenic | 60.0% |
!! | GGGGAGTGGTGGTGGTTGTT+GGG | - | chr2.1:40806001-40806020 | None:intergenic | 60.0% |
!! | GGTGGAGATGGTGTCACCGA+GGG | - | chr2.1:40806211-40806230 | None:intergenic | 60.0% |
!! | GTGTGGTGGTGGTGGATGTG+AGG | - | chr2.1:40806074-40806093 | None:intergenic | 60.0% |
!! | TCGGTGATGGTGGGGTTTGG+TGG | - | chr2.1:40806135-40806154 | None:intergenic | 60.0% |
!! | TGGTGGTGGTGGATGTGAGG+AGG | - | chr2.1:40806071-40806090 | None:intergenic | 60.0% |
AAGCGGAGGAGGAGAGGGAG+GGG | - | chr2.1:40806104-40806123 | None:intergenic | 65.0% | |
GAAGACGGCGCGGGTTTCCA+TGG | - | chr2.1:40807750-40807769 | None:intergenic | 65.0% | |
GAAGCGGAGGAGGAGAGGGA+GGG | - | chr2.1:40806105-40806124 | None:intergenic | 65.0% | |
GAGGGAGGGGAAGGTGAGTG+TGG | - | chr2.1:40806091-40806110 | None:intergenic | 65.0% | |
GCGCTTACGCATTCTCGCCC+CGG | + | chr2.1:40806489-40806508 | MS.gene90536:CDS | 65.0% | |
GGAGGGGAAGGTGAGTGTGG+TGG | - | chr2.1:40806088-40806107 | None:intergenic | 65.0% | |
GGGGAAGGTGAGTGTGGTGG+TGG | - | chr2.1:40806085-40806104 | None:intergenic | 65.0% | |
GTAGGACCCCTTGCCTGCCA+TGG | - | chr2.1:40807194-40807213 | None:intergenic | 65.0% | |
GTGGTGAAGCGGAGGAGGAG+AGG | - | chr2.1:40806110-40806129 | None:intergenic | 65.0% | |
TGAAGCGGAGGAGGAGAGGG+AGG | - | chr2.1:40806106-40806125 | None:intergenic | 65.0% | |
TGCGTGGGAGGTGACGAGGA+GGG | - | chr2.1:40806440-40806459 | None:intergenic | 65.0% | |
TGGAGAGAGGGGAGTGGTGG+TGG | - | chr2.1:40806009-40806028 | None:intergenic | 65.0% | |
TGGTGGAGAGAGGGGAGTGG+TGG | - | chr2.1:40806012-40806031 | None:intergenic | 65.0% | |
TGTGAGGAGGAGTGAGCGGC+GGG | - | chr2.1:40806058-40806077 | None:intergenic | 65.0% | |
TTGCGTGGGAGGTGACGAGG+AGG | - | chr2.1:40806441-40806460 | None:intergenic | 65.0% | |
! | AGTGAGCGGCGGGTGATGGT+GGG | - | chr2.1:40806048-40806067 | None:intergenic | 65.0% |
! | CACCGAGGGTGCGATTTGGG+AGG | - | chr2.1:40806197-40806216 | None:intergenic | 65.0% |
! | GGGCGGACCTCGCCTTTTTC+AGG | - | chr2.1:40806420-40806439 | None:intergenic | 65.0% |
!! | CGGTCGGTGATGGTGGGGTT+TGG | - | chr2.1:40806138-40806157 | None:intergenic | 65.0% |
GAGGAGTGAGCGGCGGGTGA+TGG | - | chr2.1:40806052-40806071 | None:intergenic | 70.0% | |
GGAGGAGGAGAGGGAGGGGA+AGG | - | chr2.1:40806100-40806119 | None:intergenic | 70.0% | |
GTGGGAGGTGACGAGGAGGG+CGG | - | chr2.1:40806437-40806456 | None:intergenic | 70.0% | |
! | GAGTGAGCGGCGGGTGATGG+TGG | - | chr2.1:40806049-40806068 | None:intergenic | 70.0% |
!! | GGGTGGTGGAGAGAGGGGAG+TGG | - | chr2.1:40806015-40806034 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 40805982 | 40808729 | 40805982 | ID=MS.gene90536 |
chr2.1 | mRNA | 40805982 | 40808729 | 40805982 | ID=MS.gene90536.t1;Parent=MS.gene90536 |
chr2.1 | exon | 40805982 | 40806663 | 40805982 | ID=MS.gene90536.t1.exon1;Parent=MS.gene90536.t1 |
chr2.1 | CDS | 40805982 | 40806663 | 40805982 | ID=cds.MS.gene90536.t1;Parent=MS.gene90536.t1 |
chr2.1 | exon | 40808521 | 40808729 | 40808521 | ID=MS.gene90536.t1.exon2;Parent=MS.gene90536.t1 |
chr2.1 | CDS | 40808521 | 40808729 | 40808521 | ID=cds.MS.gene90536.t1;Parent=MS.gene90536.t1 |
Gene Sequence |
Protein sequence |