AlfalfaGEDB | MS.gene95655

M. sativa cultivar XinJiangDaYe / MS.gene95655

KEGG: K03320
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0015075 GO:0015696 GO:0016020 GO:0022857 GO:0034220 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0072488 GO:0098655 GO:0110165
PFAM: PF00909.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95655.t1	XP_003623328.1	97.7	486	11	0	4	489	2	487	8.80E-272	945.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95655.t1	Q9M6N7	75.8	484	103	4	8	489	4	475	3.7e-210	732.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95655.t1	G7KSC5	97.7	486	11	0	4	489	2	487	6.3e-272	945.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene95655	0.804804	1.81E-49	-1.69E-46
MS.gene04920	MS.gene95655	0.809176	2.15E-50	-1.69E-46
MS.gene049254	MS.gene95655	0.805956	1.04E-49	-1.69E-46
MS.gene049499	MS.gene95655	0.820377	7.08E-53	-1.69E-46
MS.gene049652	MS.gene95655	0.81971	1.01E-52	-1.69E-46
MS.gene049680	MS.gene95655	0.80777	4.30E-50	-1.69E-46
MS.gene050300	MS.gene95655	-0.81222	4.73E-51	-1.69E-46
MS.gene051699	MS.gene95655	0.811132	8.16E-51	-1.69E-46
MS.gene051832	MS.gene95655	0.814964	1.18E-51	-1.69E-46
MS.gene051848	MS.gene95655	-0.804925	1.71E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95655.t1	MTR_7g069640	97.737	486	11	0	4	489	2	487	0.0	958
MS.gene95655.t1	MTR_4g017820	85.507	483	68	2	8	489	6	487	0.0	800
MS.gene95655.t1	MTR_8g095040	75.216	464	109	2	17	475	22	484	0.0	665
MS.gene95655.t1	MTR_1g036410	61.523	486	158	5	14	489	14	480	0.0	572
MS.gene95655.t1	MTR_8g074750	59.756	492	159	8	6	483	5	471	0.0	553
MS.gene95655.t1	MTR_7g115050	55.150	466	177	6	16	468	13	459	2.12e-180	514
MS.gene95655.t1	MTR_1g045550	25.478	471	288	12	24	464	48	485	1.39e-23	103
MS.gene95655.t1	MTR_1g079760	25.866	491	293	15	24	477	47	503	8.28e-20	92.8
MS.gene95655.t1	MTR_7g113340	24.524	473	291	13	24	464	47	485	5.21e-17	84.0
MS.gene95655.t1	MTR_3g463730	25.532	470	257	16	42	467	31	451	8.29e-16	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95655.t1	AT2G38290	75.826	484	103	4	8	489	4	475	0.0	721
MS.gene95655.t1	AT2G38290	77.994	359	77	2	133	489	1	359	0.0	552
MS.gene95655.t1	AT3G24300	24.948	481	285	13	24	467	46	487	6.90e-22	99.0
MS.gene95655.t1	AT4G13510	25.625	480	277	14	24	464	42	480	9.83e-22	98.6
MS.gene95655.t1	AT1G64780	26.144	459	279	12	24	452	52	480	1.34e-21	98.2
MS.gene95655.t1	AT3G24290	26.940	464	264	15	24	451	46	470	1.75e-21	97.8
MS.gene95655.t1	AT4G28700	25.301	498	282	16	24	475	51	504	4.54e-20	93.6

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Find 121 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAACAACATCAAGAG+AGG	0.638741	7.4:-34093777	None:intergenic
AAAGTCAAGTCTTCTGCAAA+AGG	0.451410	7.4:+34094895	MS.gene95655:CDS
AAATAAACAAGTGAAGCCAT+AGG	0.597753	7.4:-34092306	None:intergenic
AAATATGATCCAACTAGGCA+TGG	0.582321	7.4:+34096942	MS.gene95655:CDS
AACAAGGAGAATGATTGTGG+TGG	0.634525	7.4:-34096817	None:intergenic
AAGATCATCATGGAGAACCA+AGG	0.681910	7.4:-34094866	None:intergenic
AATAGTAATCTACAAAGGGC+TGG	0.532579	7.4:-34096690	None:intergenic
AATGTGTTGCTGATGCTTGC+AGG	0.420148	7.4:+34093629	MS.gene95655:CDS
AATTCAAGGGGTGCATTCTA+TGG	0.355468	7.4:+34096723	MS.gene95655:CDS
ACAATTCCTAAAACAATTAG+TGG	0.438994	7.4:+34096761	MS.gene95655:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAACAACATCAAGAG+AGG	-	chr7.4:34093780-34093799	None:intergenic	30.0%
AAATAAACAAGTGAAGCCAT+AGG	-	chr7.4:34092309-34092328	None:intergenic	30.0%
AACAAATTATATGTGCAGGT+TGG	+	chr7.4:34093566-34093585	MS.gene95655:intron	30.0%
AAGTCGTCAAAAAGTGAAAA+AGG	+	chr7.4:34094223-34094242	MS.gene95655:intron	30.0%
AATTATAAGAAGGAGGATGA+AGG	-	chr7.4:34095608-34095627	None:intergenic	30.0%
ACCAAAATGATTAGACACAA+TGG	-	chr7.4:34096350-34096369	None:intergenic	30.0%
ACTCAAAAGAGGCAAATTTA+AGG	-	chr7.4:34094455-34094474	None:intergenic	30.0%
AGTCGTCAAAAAGTGAAAAA+GGG	+	chr7.4:34094224-34094243	MS.gene95655:intron	30.0%
ATGAATGTATGATGAAAGGA+AGG	-	chr7.4:34092660-34092679	None:intergenic	30.0%
ATGCATCACTTTCTTATTGT+AGG	+	chr7.4:34093877-34093896	MS.gene95655:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	34091913	34097037	34091913	ID=MS.gene95655
chr7.4	mRNA	34091913	34097037	34091913	ID=MS.gene95655.t1;Parent=MS.gene95655
chr7.4	exon	34091913	34092563	34091913	ID=MS.gene95655.t1.exon1;Parent=MS.gene95655.t1
chr7.4	CDS	34091913	34092563	34091913	ID=cds.MS.gene95655.t1;Parent=MS.gene95655.t1
chr7.4	exon	34093584	34093869	34093584	ID=MS.gene95655.t1.exon2;Parent=MS.gene95655.t1
chr7.4	CDS	34093584	34093869	34093584	ID=cds.MS.gene95655.t1;Parent=MS.gene95655.t1
chr7.4	exon	34094813	34094916	34094813	ID=MS.gene95655.t1.exon3;Parent=MS.gene95655.t1
chr7.4	CDS	34094813	34094916	34094813	ID=cds.MS.gene95655.t1;Parent=MS.gene95655.t1
chr7.4	exon	34096609	34097037	34096609	ID=MS.gene95655.t1.exon4;Parent=MS.gene95655.t1
chr7.4	CDS	34096609	34097037	34096609	ID=cds.MS.gene95655.t1;Parent=MS.gene95655.t1

Gene Sequence

>MS.gene95655

ATGGCAGCAGCAGCATCACCAGCATACCAAACACATCTTCCAACATCACCAGCATGGCTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTAGTTGGTCTACAAAGCATGCCAGGACTAGTAATTCTCTATGCAAGCATAGTGAAAAAGAAATGGGCAGTGAATTCAGCTTTCATGGCACTATATGCTTTTGCAGCAGTTTTAATCTGTTGGGTTCTTGTTGCTTATAGAATGGCTTTTGGTGATCAACTTTTACCTTTCTGGGGTAAAGGTGCACCAGCTTTAGGGCAAAAATTTCTTGTTGCTAGAGCGAAAGTACCTGCAAGTACTCACTATTACAAGAATAGTGATGTTGTTGAAACACCAATGGAAGAACCTTTTTTTCCTATGGCTTCACTTGTTTATTTTCAGTTTACTTTTGCTGCTATTACTATGATTTTGTTGGCTGGTTCTGTTCTTGGAAGGATGAATATTAAGGCTTGGATGGCTTTTGTTCCTCTTTGGCTTATTTTTTCTTATACTGTTGGTGCTTTTAGTCTTTGGGGTGGTGGATTTCTTTATCATTGGGGTGTGATTGATTATTCTGGTGGCTATGTTATTCATCTTTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTAATTAACCTTTCTTTCATCAATTTGGGTAGATAAATTTTGTATTTTTTTCACAACCCTTTATCTAATTTTGCTTAAAAACTTAAAGGGTACCCTTCCTTTCATCATACATTCATATGTTGTGCATAAAGTTTGTATTTTCTTCACAACCCTTCATCTAATTTTGCTTAAAAGGCTTATTTTGTAGCTTATAACATAAGTGCTTATCATGAAAAGGGCTTATGTATAAGCTATTTTTATAACGAAAGATATTAAAAGGTAAATTGTTTTTGTATAAGCTATCAACTGTTTTCATAACCTATCTTGAAGAGCTTGTGAAAATAAGCTGAAAATAAGTTATCATAAGTTTTTCTAAAGAGTCTCAGAAGGGCTTATGTCAATAGATAAGCTCAAGTAAGTCAATTTGGACAAATTTCGAACGGCCCTTAGATGCACCCTCCCTTCCTTCATGGAGCACAAAAGTTTCAATTTTTTCACTACCATTCGTCTAATTTTGCTTAAAAGCTTAGAGGGTACTTTCCCTTTTTCATGTGGTTGAATTGAAATGTTATCTATATATTTTACTTTATTTCTATGATAGTTATGTCATCTATAAATTAATTGCCATTGGTGGTTGGTTTTAGCATTAAATACTAATTCAAGATTTTAAAATTTCTGTACCTATAATTGCAATTACATTGTGATTATTGAAGTTATGAATTGCAGAATCATTTAAAACTTCAATACTGTGGTTGTACTTGTGATTGCAATTGGACACTGCAATTTAAAATCAAACTTAGAAACCATCAACCAATTAATCTTTCATAATTTATGATTCACCAAACTCCAGCTCTTTCAATCAAATCTCAATCGTTGGATTAATTCAATGTTTTAGAGCGTTGATCTCTTAGCAGTTAGATTAATCTAACGATTGAGATTTTGCTGGAGAGGATCCAACTCCGTATATTTTCTAGGTATTTATTCATTTTTGGTATAGAAATTTGGTTTTTCGATTAATGTGAAAACAAATTATATGTGCAGGTTGGACCAAGGATAAAGAGTGATAGGGAAAGGTTTCCACCAAACAATGTGTTGCTGATGCTTGCAGGTGCTGGATTGTTATGGATGGGTTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAATGTTGCATCTTCAATTGCTGTATTGAACACAAACATTTGTGCAGCAACTAGTCTTCTTGTGTGGACCTCTCTTGATGTTGTTTTCTTTGGGAAGCCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTATGTATCACCCCAGGAGCAGGTAATATATGCATCACTTTCTTATTGTAGGTGAAATGCTTGTTCTGTTTTTGACATTGTGAATAAGTGTTATTATGAAAATGTTCTATACTATACTAGTTCTAGAGTTTGAATTTGATGCAAAAATATGAGTAGCATGATTAAGTTATGTGTTGTGAATGTCACATGATGACATGAAAAAACTGAATTGTATTTAAGTCTTGAGGGTCTTGTGCTGAATGAACTAGTTTTTTGGATTGTGTTCTTTTCATCCGTTTAAGTCATAACAATTGATACTTTTGTTGAGAGCGGGATTACGAAAAGAGTTGCTTATAGGTTGATTAAGGTAGATCACTAACTACTAATAGGTGAGTGAAGTCGTCAAAAAGTGAAAAAGGGAGATGCAATGTTATGGAACTCACGTTAAGTGCATGTTGGTATTAGTCAATTTATCAAAATCACGGTGGCACCACAATTTTATTGAAGTTCTAAAGTGTAGCTTTTGCAAAATCATGGCCGCTCACCGTAATTTTGTCAAACTCACCGTGAATACAAACAGAGTAAATAAGAAAACTCAGTGTGATACTTGAGTTGTGGACTCTCCCCTTAAATTTGCCTCTTTTGAGTTTAAGTCATAACATTATGTGTGCCCCAATTGAAATATGAATTTAATATTAATAGAATAGAAACTCATTTAAGTTGGTCTAGTGTGTTCCTCCTCAAGGTTTAAAAAATAAATATTAATAGAATTGAAGTTTTTTGTTTTCTTAAAATCATCAAAAATATTCACTAAATTGGAGAAAGTAGATATGAACATTTATTACAAGAATAATATTTGTTGGGCACTCACTGATATTTTGATACTAACAAAAAGTACAGTAGGTAGTATCATAATGATTTAATTAGTGACCATAGTAGCAGTTTTTGTTGACAATTAATGTGAATGGTGTGTCTGCATCATGTAGGGCTTGTGCAATCGTGGGCGGCTATTGTGATGGGAATTCTATCTGGGAGCATTCCTTGGTTCTCCATGATGATCTTGCATAAAAAGTCAAGTCTTCTGCAAAAGGTTAGAGTTTCTCTTCACAAAGAATTTTTTCTGAATTTTAGTCCACTCACTAAATATAGTATAGCTTAATTATATTTTGGTTTACACGTATCTAGTAATTCTTTTGAATGATAGGGGATTTTTTTTTTGAAAGAAAATGATAGGGGATTTAGATCTTTAAAGTTTAACTACATAATAAAAATCTAGTTTGTCATTGACTCGGATTGATTAAGAAGTTGACTCATATCTCGCGAGAAAATATGTTCAATTCTTATAAACGACGTGAAATATTTGATTTTACAATAATATACATGAATAGTTAATCGACGTGAAATATTTGATTTTACAATAATATACATGAATAGTTGTATAGAGTAATAATATATTGGGATTGGTTAAGAAGTTGACTCATATCTCACGAGAAAATATGTTCAACTTCTATTATCGACGTATAATATTTGATTTTATAATAATATACATGAATAGTTGCCTAAGGTAGTAACATTCCAATGTTAAGGATGAAGTTTGGGTGAAGGTTCCTCTTTGCTAGGTCACATGTTTGTAAATCCTTGTTTAATGTTGAAAAATTGACGAATGCCCCAGGTTTCCAATATTGATTCCAAATTCCAACAACTTTCTTTTTCTTATGGTCCACTTTCATTCTTTTTTAAACAAGGTACTATATTGATATGATATGATATTGAAGATGCCTTCATCCTCCTTCTTATAATTAATATAATATTTAAAAGAAAATATATGAAAAGGATAGAAGTATTAATAAACACATTATAATGAAAATGACACTTCCTTCAAAAAAAAAATGAAAATAATAATCTACACTCTACTTTTCTTGCTTGGACTTTTCTGTTTGAAATAGGTTGATTTTTTTTGTTGAAATTGTCAAAAAATAGTTAGCTGATTTTTTTTATATTTAGAAGTAAGTTTTTTTTTTCTAGGGAAGTAAGCATCTTCTTATTGTTGACAAAAAATGAAGCATGCTTCTCAAACATGAGTTAAATATATGTTTAATTCCTATAAAACCAGCAAAAGAAATTGGTCCATGTAATTTTTTTTATTTGTTTCAGGGTATGGATGAAAAAATAATTTATTTTTTGATCAAATCAGCCTCTTTTTTATATTAAAAACACACATTTTTATATTTTAGAAAAGTAATTAATAAAAAGTAGTAAACTTTTTGAAAGAATAAAAAGTAGTGAGCTTAAAAACCAAAATCAAATTTTGTTCATTTTATAAGATAAAAAAATATGATAAATTTTATTTTCATTCCTATCTAACATTTCTTGAACTCATCTTGTCTACCATTGTGATAGTGGCATGATGGCATTTTTCATCTAAGCATATCTAGATTTTGCCTAATGAGTCTCAAATATCACCATCACACAAAATTTCAAACTACTCATCAAAAATAGCATTGAATCTCAAATATTATTCCATTGTGTCTAATCATTTTGGTATAGTGTTTAATTTAGTTAATTTAATACCATTCATTAAGGTGTGCAGTCATCACAAATAACAAGTTTAAAGGAGTTTAAAAAGAAATTAAATCTTAATTGTTCGATTTCGATCGACTCATCTATATAGGTTTGTACACAAAATGACTGCAGAGAATCTCAATCCGTTATTTCGCGATCATTTATCCTTAATTTCGCGATCATTTATCCTTAATTTGTTGTGCTTTTTTTTGTATTAAAGGTTGATGACACTCTTGGAGTATTTCACACACATGCTGTGGCTGGCCTATTGGGTGGCCTACTAACAGGACTCCTTGCAGAGCCAGCCCTTTGTAGATTACTATTACCAGTGACAAATTCAAGGGGTGCATTCTATGGTGGAAGTGGTGGTGTACAATTCCTAAAACAATTAGTGGCAGCAATGTTTGTTATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAACTATTCATACCCTTGAGGATGCCCGACGAGCAGCTCGAAATCGGTGATGATGCGGCTCACGGCGAGGAAGCTTATGCTCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGGCATGGTTCGTTGAATACTGGTAACACTGGAGTGTCACCTTATGTTAATGGTGCAAGAGGTGTGACTATAAATTTATGA

Protein sequence

>MS.gene95655.t1

MAAAASPAYQTHLPTSPAWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGDQLLPFWGKGAPALGQKFLVARAKVPASTHYYKNSDVVETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWFSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGSGGVQFLKQLVAAMFVIGWNIVSTTIILLVIQLFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNTGNTGVSPYVNGARGVTINL