AlfalfaGEDB | MS.gene068565

M. sativa cultivar XinJiangDaYe / MS.gene068565

KEGG: K11594
GO: GO:0000166 GO:0003674 GO:0003676 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00270.32 PF00271.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068565.t1	XP_013467733.1	97.2	608	16	1	1	607	1	608	2.3e-309	1070.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068565.t1	Q9M2F9	77.9	544	109	4	31	572	31	565	6.8e-222	771.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068565.t1	A0A072VUJ1	97.2	608	16	1	1	607	1	608	1.6e-309	1070.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene068565	0.843342	1.49E-58	-1.69E-46
MS.gene049419	MS.gene068565	-0.832971	6.97E-56	-1.69E-46
MS.gene049580	MS.gene068565	0.812392	4.34E-51	-1.69E-46
MS.gene049680	MS.gene068565	0.869129	3.90E-66	-1.69E-46
MS.gene049861	MS.gene068565	0.813671	2.28E-51	-1.69E-46
MS.gene049951	MS.gene068565	0.800863	1.18E-48	-1.69E-46
MS.gene050271	MS.gene068565	0.828004	1.14E-54	-1.69E-46
MS.gene050288	MS.gene068565	0.825912	3.62E-54	-1.69E-46
MS.gene05029	MS.gene068565	0.826412	2.75E-54	-1.69E-46
MS.gene050752	MS.gene068565	0.812443	4.23E-51	-1.69E-46

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068565.t1	MTR_1g054630	98.358	609	7	2	1	607	1	608	0.0	1224
MS.gene068565.t1	MTR_3g083690	71.474	631	129	8	8	607	3	613	0.0	792
MS.gene068565.t1	MTR_4g114120	59.828	580	202	11	8	572	3	566	0.0	634
MS.gene068565.t1	MTR_2g100230	43.880	433	213	8	140	564	83	493	4.08e-112	345
MS.gene068565.t1	MTR_6g005550	43.632	424	219	6	140	560	152	558	4.27e-110	346
MS.gene068565.t1	MTR_3g467550	45.363	399	202	5	137	528	101	490	8.32e-109	338
MS.gene068565.t1	MTR_4g105100	42.857	441	226	8	109	542	156	577	1.86e-108	339
MS.gene068565.t1	MTR_3g467550	46.684	377	185	5	159	528	92	459	3.30e-105	328
MS.gene068565.t1	MTR_2g032630	43.192	426	222	7	140	563	483	890	2.01e-100	331
MS.gene068565.t1	MTR_4g134170	39.514	453	242	8	114	546	244	684	3.28e-99	317

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068565.t1	AT2G42520	73.730	571	118	7	7	555	2	562	0.0	818
MS.gene068565.t1	AT2G42520	73.730	571	118	7	7	555	2	562	0.0	818
MS.gene068565.t1	AT2G42520	73.730	571	118	7	7	555	2	562	0.0	818
MS.gene068565.t1	AT3G58570	72.531	557	139	4	5	555	1	549	0.0	788
MS.gene068565.t1	AT3G58510	72.097	577	137	8	7	571	2	566	0.0	775
MS.gene068565.t1	AT3G58510	72.097	577	137	8	7	571	2	566	0.0	775
MS.gene068565.t1	AT3G58510	72.097	577	137	8	7	571	2	566	0.0	775
MS.gene068565.t1	AT5G63120	46.229	411	195	8	137	542	152	541	6.51e-114	352
MS.gene068565.t1	AT1G55150	42.459	431	221	7	140	562	87	498	2.40e-111	343
MS.gene068565.t1	AT1G55150	42.691	431	220	8	140	562	112	523	1.44e-110	342

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

Find 195 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACCTGTTGGGTGAT+CGG	0.572239	1.1:+42033926	None:intergenic
AAAGGAAATGATTACTATGG+TGG	0.493627	1.1:-42030209	MS.gene068565:CDS
AACACTGCTTGTGTGTTAAC+GGG	0.434919	1.1:-42031513	MS.gene068565:CDS
AACAGGACGAGCTGGTAAAA+TGG	0.309296	1.1:-42030432	MS.gene068565:CDS
AACATCACGGCCACCAAAAC+GGG	0.371256	1.1:+42030253	None:intergenic
AACATTTCCCAAAGAGATAC+AGG	0.451243	1.1:-42033585	MS.gene068565:intron
AACTTTGAGAACAGCTACAT+GGG	0.566954	1.1:-42034818	MS.gene068565:CDS
AAGAAAGATAGTTGAACAAA+TGG	0.437695	1.1:-42033651	MS.gene068565:CDS
AAGGAGAGCTCATATAATAA+AGG	0.419864	1.1:-42030227	MS.gene068565:CDS
AAGGAGTCCTTGCTGCATAA+CGG	0.532448	1.1:+42030309	None:intergenic

Showing 1 to 10 of 195 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAAATGATTACTATGG+TGG	-	chr1.1:42034750-42034769	MS.gene068565:CDS	30.0%
AACATAACTCCAAGATAACT+AGG	+	chr1.1:42031918-42031937	None:intergenic	30.0%
AAGGAGAGCTCATATAATAA+AGG	-	chr1.1:42034732-42034751	MS.gene068565:CDS	30.0%
AATGAATGAAGCATGGTTAT+AGG	+	chr1.1:42032652-42032671	None:intergenic	30.0%
AATGGAACATCATAATACCA+TGG	+	chr1.1:42034159-42034178	None:intergenic	30.0%
AATGTAATTGTTCTGTTTGC+AGG	-	chr1.1:42034347-42034366	MS.gene068565:CDS	30.0%
AATTGAGATTGCCATAATTC+AGG	-	chr1.1:42031598-42031617	MS.gene068565:intron	30.0%
ACAAATTACCTGTATCTCTT+TGG	+	chr1.1:42031385-42031404	None:intergenic	30.0%
ACAGTCGTTTATTTAAGAGT+AGG	-	chr1.1:42033318-42033337	MS.gene068565:intron	30.0%
ACCTATTCTAATAATCCTCA+AGG	-	chr1.1:42032262-42032281	MS.gene068565:intron	30.0%

Showing 1 to 10 of 380 entries

Previous1 2 3 4 5…38Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	42030133	42034848	42030133	ID=MS.gene068565
chr1.1	mRNA	42030133	42034848	42030133	ID=MS.gene068565.t1;Parent=MS.gene068565
chr1.1	exon	42034114	42034848	42034114	ID=MS.gene068565.t1.exon1;Parent=MS.gene068565.t1
chr1.1	CDS	42034114	42034848	42034114	ID=cds.MS.gene068565.t1;Parent=MS.gene068565.t1
chr1.1	exon	42033934	42034017	42033934	ID=MS.gene068565.t1.exon2;Parent=MS.gene068565.t1
chr1.1	CDS	42033934	42034017	42033934	ID=cds.MS.gene068565.t1;Parent=MS.gene068565.t1
chr1.1	exon	42033586	42033828	42033586	ID=MS.gene068565.t1.exon3;Parent=MS.gene068565.t1
chr1.1	CDS	42033586	42033828	42033586	ID=cds.MS.gene068565.t1;Parent=MS.gene068565.t1
chr1.1	exon	42031774	42031941	42031774	ID=MS.gene068565.t1.exon4;Parent=MS.gene068565.t1
chr1.1	CDS	42031774	42031941	42031774	ID=cds.MS.gene068565.t1;Parent=MS.gene068565.t1
chr1.1	exon	42031474	42031587	42031474	ID=MS.gene068565.t1.exon5;Parent=MS.gene068565.t1
chr1.1	CDS	42031474	42031587	42031474	ID=cds.MS.gene068565.t1;Parent=MS.gene068565.t1
chr1.1	exon	42030133	42030612	42030133	ID=MS.gene068565.t1.exon6;Parent=MS.gene068565.t1
chr1.1	CDS	42030133	42030612	42030133	ID=cds.MS.gene068565.t1;Parent=MS.gene068565.t1

Gene Sequence

>MS.gene068565

ATGTCTGCAACTTTGAGAACAGCTACATGGGCAGATTCTGCTGACAATGCAGCTAATGCTTCATCGGCCGCGCGCCCGGTCAAGCCGGCTTATGTTCCACCGCATCTTCGTAACCGATCAATGGCTGCTCCGGCCGAGCCACCTTCTTTGGTGGCTAATGATAGGGCTTTGGGTAATAATTGGGGTAGTTCGTCGAATTTTAAGCAGGATTTTGGGGCTGGGAGACAAGTAGGTGGAGGATACGGTGGTGGTGGTGGTGGGGGGTTTGGTGGGTTTAACAGAGGGGGAGCGGGGAATGGGAGGGAGCGTGTGGGAGGAGGAAGACGTGAGGTGAATCCATTTGAGAATGATGTTGATGAAACGTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACGAGTGGGGAGCATGTTCCGCCTCCCGTGAATACGTTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAATATAAAGAGATGTAAGTATGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCGCTTGCTGGGAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGAAAGACAGCTGCATTTTGCTTTCCGATTATAAGCGGAATCCTTAGGGAGCAGTATGCTCAAAGACCACGTGTGGCACGGACTGCTTATCCTCTCGCACTTATCCTATCCCCTACTCGGGAGCTCTCTTGTCAGGTTGGGGTTTTAATACGAGTTTCTGATTTCATAATCTGTATATGACTAGGTTATCTGTATCTCAAAAACCAATGTTTTGTTTTTATTGTTTCACAGATACATGACGAGGCCAAGAAGTTTTCTTATCAAACAGGGGTCAAGGTCGTAGTTGCTTATGGAGGAGCACCGATCACCCAACAGGTTATTTTCCACTACATGCAATGTTTGTTTGTATACTTTTTCTTTTTTATTGAGTTTTAGTAAGGAACAGAAAATTTCAAACAAACTTATACTATTTGATTTCAGTTGCGGGAGCTTGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATCTAGCTCTTGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGGTAATTTGTTACTTGTACTCAAACTGTCGACTTGTTATTTTTTGCATGAGGATCTGTCCTCCCTGGAACATTTGTGTTTTTTTAGAAGCTAAATTACCCATTTATTGTAAAAAGTATGTTTCTGGCATTTCTGTTTACTGTTGTTTCTTTAATTTAGAATTGGTATAGGAAGTATTTTTAACGTCACTTCTGTACTCGTGGAAATTGAGATTGCCATAATTCAGGTGTTTGAACATACTTTAAAGTTTAATAGTTACAGAAAACTACCCCAACAAATAGCCAACCTTGAGAGTAGGGGAAAAATAGCTTTTGATTTAAAAGGGGAGCACAATTTGTTTTATTTAACTGTGGAAATCCTGCTCTGTCATGGTCATGCATGAAACAATTTTAGTAAGTATCCTTCGATTCAATACATACAATACGTACTGCGATGTGATACGAAAACACCCATCACCGGTACGTATCTTACTCTGTATTGCAAAACACCCAACTGGTGAATATGGTAAGGGTCTAAAACCTCCTAGTTATCTTGGAGTTATGTTTGGTTTTGATTGAATTAAGGATGTTTTATGTTATTTATTTTTGTTTATGAATTGATTTTTGAAGTATTTTGGAGCTTATATATGATATTTAAAGTCATGTTTTTTTGTTAATGTATCTTTCGATACATGATTCAAAAAAGTGGTCGAACGATAGACGATACATATCTCGATTTGACTACCATGAAACTGAGTCTTATTTATGTTAATCTTTACTTATTTTGGAGGAAGGGTTACTACTATAGTGTAAGGATTGAACAGGTACGACTTAATAAGACATCTTTAGCTCATATGCTTCTCATACTTCATCTTCCGTGTTTAGCGACAACCTATTCTAATAATCCTCAAGGAAAGTGTAGGCGTGAATTTGGTAGTTCTCTTCTTTTCAGATGACCATACTCTTATCAATCTATAGAACCTCAATCTGGATGGCCTTGATGTTGGCAGAAAAACAAAAACTCTTCTTCTGTTGCTAACTTTTGAATATTTGTTTTTTCGTGCTGACAATGAATCCTTAGAGTTGAAGAAATAGTTCTTTTTGGAGAAAAGTCCATATTCAAAATTTGTCTCATTAAGGTGGAAAGCGGATGCTATATGCCAATTGTGTCTGACTCTGTTATGTGGACTAATATGGTTTTCTTAACCAAATTGTTTTAAAATAATATTATTACATATTACGAGTGGCACTTGATTTTGAAAAATGACATATTGATGCCTATAACCATGCTTCATTCATTTGGCAGGTGCAAACAATGACACTGCTTAATTTGTTAAAGTAATATGTAGTAAGTGTGTTTTTGAAATAATTATAGTCAGGATTAAATGATGGTGATGTAGTTTTGGGGATATGTTGAAGTTTTTATGGTGATATTTTCACATAGTAATTAAGATACTCATGTTTGACTGTGTTTGACTCTGAAATGAGTCATAGAAACTGTTTGCTTAGGATTATTCTTTGTATGTGAGATAGACATTCTAATTAATTAACAGAGTTTGGTTTGTTGACAAGTGACAATCATTTTGTAATCAGCTAGTTGCAATTTATATTTGCTGCATGATTGATATAATAATGATTATGATGTCCCTTCATTTGAATGCACTGCAGAGACTTGCTTCAGATTTTCTTGCTAGTTATATCTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTGGAGTCTGACAAGAGAAGCCACCTCATGGACCTCCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGGTAATTGTCACCTCTGCATACTGCTGCTATTCAAACTTGTACATGTGTTGGCCGCAGTTTACATTTTGTTAGTGAAATTCACTAATATTCAAAAACTATGCTGCACTGGAACAGTCGTTTATTTAAGAGTAGGAAGATTTCTGGTTTTGTCACACTCAATTAAGGATTTTTTTGTGGTTTTTGCAGCAAGGTCTGACTTTAGTGTTTGTGGAAACGAAGAAAGGTGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGCGACAGAACACAGCAAGTGAGTCTGTTTAGCTAATTGAAGTTTGTGTTTAATATTAAACATGTCAGCATTATGATTACACTAAAATAATTACATATTTTCTTGATTTGTTCTGTTTCTTTGTTGTTCCTTTTTACTAACATCTGATATTTCCTTGTGCTTTTAAGTTCTACATTCTCAATGAGACTTTAACGGGGTTAAAATTTGAGAAATTTCTCGATGTTCAAATTTTAAAAACTCATTTTTGTCAGTTTATACTGCCACAGAAATGGGATTTGGCTTCTTTTACCTAATTTCCCCCTCTTCCAAAAGAAGCTTCTTTTGTTTTCACTATAGTTGAAATGACAGGTTCCAAATTACCATGAAAGCCCATCTCTTTCACCATGCTCCCTTCCTACTTTGGAGGATTTTTTTTTCTTTCTTTTCTAATATATTGAAATTTCTAAGTAAACTTTTTATTTGAGTTTTAAATTTATAAGGTAAAAAACTGTCTTGCTGTCATTTAACTAAATCCTATTGAAATTTCTTAGCGCATTGGATATGTAGGTTACTTTCTAGTACTCATAATGTGCTCTTTCCATTAAACCATAGAACCGATGCTTCGAAATTTCAATTTGCGTTTTTTCTTTTTTGGGTGCATGGTGGTCGTTTTTTAGTTGTTGTCAACCATGGTATTATGATGTTCCATTGTTTTGTGGGAATTGAATTTCTCTATGGTTGCTGCTTGTTGAAATCATTACTTATGATTTGCCATTAGTTATTAAATTCTATCAAGCTTTATGATTTGCCATTAGTTATTAAATTCGCTCAAGCTTTCCCAATATTGTGTTAGGACTTTTGAACTAAAAGTTGTGTGCAATGTAATTGTTCTGTTTGCAGGAAAGAGAACAAGCATTGAGATCATTCAAGACTGGAAACACTCCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTTGATATTCCACGTGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGACGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGTGGTAGAAACAAGCGGACTGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATATAATAAAGGAAATGATTACTATGGTGGAAACGGTGGTGGTTATGGTGTTCCTGCCAGTTATGGCGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG

Protein sequence

>MS.gene068565.t1

MSATLRTATWADSADNAANASSAARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRALGNNWGSSSNFKQDFGAGRQVGGGYGGGGGGGFGGFNRGGAGNGRERVGGGRREVNPFENDVDETFTEQENTGINFDAYDDIPVETSGEHVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGGRNKRTGGARFGGRDVRKESSYNKGNDYYGGNGGGYGVPASYGGGYGQGVTSAWD