AlfalfaGEDB | MS.gene34444

M. sativa cultivar XinJiangDaYe / MS.gene34444

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34444.t1	XP_003592328.1	99	104	1	0	1	104	1	104	3.90E-52	213.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34444.t1	G7IC10	99.0	104	1	0	1	104	1	104	2.8e-52	213.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene34444	0.82437	8.37E-54	-1.69E-46
MS.gene049419	MS.gene34444	-0.837067	6.47E-57	-1.69E-46
MS.gene049499	MS.gene34444	0.806647	7.43E-50	-1.69E-46
MS.gene049567	MS.gene34444	0.806847	6.74E-50	-1.69E-46
MS.gene049652	MS.gene34444	0.810279	1.25E-50	-1.69E-46
MS.gene049669	MS.gene34444	0.836398	9.58E-57	-1.69E-46
MS.gene050559	MS.gene34444	0.821857	3.23E-53	-1.69E-46
MS.gene050561	MS.gene34444	0.819919	9.02E-53	-1.69E-46
MS.gene050562	MS.gene34444	0.818638	1.77E-52	-1.69E-46
MS.gene050780	MS.gene34444	0.814915	1.21E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34444.t1	MTR_1g101680	99.038	104	1	0	1	104	1	104	6.79e-74	214
MS.gene34444.t1	MTR_1g101750	98.361	61	1	0	44	104	6	66	8.73e-41	129
MS.gene34444.t1	MTR_8g043660	61.458	96	31	2	6	96	18	112	1.39e-37	122
MS.gene34444.t1	MTR_8g032890	60.417	96	32	2	6	96	18	112	1.44e-35	117
MS.gene34444.t1	MTR_7g104250	63.333	90	31	1	10	97	6	95	4.10e-32	108
MS.gene34444.t1	MTR_1g060430	51.923	104	36	3	2	92	7	109	5.59e-31	106
MS.gene34444.t1	MTR_8g032940	63.043	92	29	1	6	92	18	109	1.02e-30	105
MS.gene34444.t1	MTR_5g038200	44.928	69	35	1	16	84	9	74	2.89e-15	65.1
MS.gene34444.t1	MTR_7g055590	74.286	35	9	0	59	93	461	495	1.31e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34444.t1	AT4G25433	52.525	99	36	3	4	92	7	104	8.36e-30	103
MS.gene34444.t1	AT5G62150	58.947	95	37	2	7	101	10	102	9.28e-29	100
MS.gene34444.t1	AT3G52790	51.485	101	37	3	6	96	10	108	3.23e-28	99.0

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Find 25 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATTTCCTAGTATTGGT+CGG	0.516529	1.2:-75920945	None:intergenic
AGACCAGGGAAAACATCATC+TGG	0.456913	1.2:-75920903	None:intergenic
ATCAATAAGAGAAAGTACTG+TGG	0.691350	1.2:+75920734	MS.gene34444:CDS
ATGATTCTGATAACAAGACC+AGG	0.590651	1.2:-75920918	None:intergenic
ATGTGATGAGATATATGTTG+TGG	0.646471	1.2:+75920800	MS.gene34444:CDS
CAAGTTAGAGGGAATAGTCT+TGG	0.505805	1.2:+75920765	MS.gene34444:CDS
CACAACATGGGTTCCTCTAG+AGG	0.559347	1.2:+75920657	None:intergenic
CTAGAGGTGATTCAGCATCA+TGG	0.560521	1.2:+75920673	MS.gene34444:CDS
CTTCAACAATTTCCTAGTAT+TGG	0.339584	1.2:-75920949	None:intergenic
GAGATATATGTTGTGGGAGA+AGG	0.558851	1.2:+75920807	MS.gene34444:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACAATCAGTGAAAAATG+TGG	+	chr1.2:75920840-75920859	MS.gene34444:CDS	30.0%
ATGTGATGAGATATATGTTG+TGG	+	chr1.2:75920800-75920819	MS.gene34444:CDS	30.0%
CTTCAACAATTTCCTAGTAT+TGG	-	chr1.2:75920952-75920971	None:intergenic	30.0%
GTTATTGGGCATGATATTAT+TGG	+	chr1.2:75920710-75920729	MS.gene34444:CDS	30.0%
TATTGTGCAATAGCGTTATT+GGG	+	chr1.2:75920696-75920715	MS.gene34444:CDS	30.0%
TGTGATGAGATATATGTTGT+GGG	+	chr1.2:75920801-75920820	MS.gene34444:CDS	30.0%
ATGATTCTGATAACAAGACC+AGG	-	chr1.2:75920921-75920940	None:intergenic	35.0%
GATTCCTCTCTACAATAAAC+GGG	-	chr1.2:75920869-75920888	None:intergenic	35.0%
GGATTCCTCTCTACAATAAA+CGG	-	chr1.2:75920870-75920889	None:intergenic	35.0%
GTATTGTGCAATAGCGTTAT+TGG	+	chr1.2:75920695-75920714	MS.gene34444:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	75920663	75920977	75920663	ID=MS.gene34444
chr1.2	mRNA	75920663	75920977	75920663	ID=MS.gene34444.t1;Parent=MS.gene34444
chr1.2	exon	75920663	75920977	75920663	ID=MS.gene34444.t1.exon1;Parent=MS.gene34444.t1
chr1.2	CDS	75920663	75920977	75920663	ID=cds.MS.gene34444.t1;Parent=MS.gene34444.t1

Gene Sequence	>MS.gene34444 ATGGGTTCCTCTAGAGGTGATTCAGCATCATGGTATTGTGCAATAGCGTTATTGGGCATGATATTATTGGGATCAATAAGAGAAAGTACTGTGGCTGAATTACAAGTTAGAGGGAATAGTCTTGGTGATCACAAAGCATGTGATGAGATATATGTTGTGGGAGAAGGAGAAACACTCAACACAATCAGTGAAAAATGTGGTGACCCGTTTATTGTAGAGAGGAATCCACATATCCATGATCCAGATGATGTTTTCCCTGGTCTTGTTATCAGAATCATCACACCGACCAATACTAGGAAATTGTTGAAGAGCTAG
Protein sequence	>MS.gene34444.t1 MGSSRGDSASWYCAIALLGMILLGSIRESTVAELQVRGNSLGDHKACDEIYVVGEGETLNTISEKCGDPFIVERNPHIHDPDDVFPGLVIRIITPTNTRKLLKS