AlfalfaGEDB | MS.gene53537

M. sativa cultivar XinJiangDaYe / MS.gene53537

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53537.t1	XP_003590164.1	96.2	80	3	0	1	80	1	80	8.00E-37	162.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53537.t1	G7I6N1	96.2	80	3	0	1	80	1	80	5.7e-37	162.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene53537	0.80224	6.16E-49	-1.69E-46
MS.gene04920	MS.gene53537	0.804873	1.75E-49	-1.69E-46
MS.gene049254	MS.gene53537	0.836344	9.89E-57	-1.69E-46
MS.gene049283	MS.gene53537	0.830481	2.87E-55	-1.69E-46
MS.gene049419	MS.gene53537	-0.819892	9.15E-53	-1.69E-46
MS.gene049499	MS.gene53537	0.841663	4.14E-58	-1.69E-46
MS.gene049983	MS.gene53537	0.826529	2.58E-54	-1.69E-46
MS.gene050105	MS.gene53537	0.809118	2.22E-50	-1.69E-46
MS.gene050559	MS.gene53537	0.809427	1.90E-50	-1.69E-46
MS.gene050561	MS.gene53537	0.802834	4.65E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53537.t1	MTR_1g045370	96.250	80	3	0	1	80	1	80	2.84e-53	160
MS.gene53537.t1	MTR_1g073660	52.381	84	36	2	2	81	3	86	9.61e-20	75.9
MS.gene53537.t1	MTR_1g073660	51.807	83	36	2	2	80	4	86	7.23e-19	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53537.t1	AT2G33390	55.556	54	24	0	27	80	26	79	4.06e-16	67.0
MS.gene53537.t1	AT2G33390	48.387	62	32	0	19	80	18	79	4.88e-16	67.0

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Find 24 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAATAAATAATTACCT+TGG	0.551962	1.2:-28021190	None:intergenic
AAAGTTGAAGATCATGTCAA+TGG	0.586470	1.2:+28021031	MS.gene53537:CDS
AATATTGTTGATGGATTCAA+AGG	0.408359	1.2:+28020943	None:intergenic
ACCTGTGGTGGTTTGTGTTA+TGG	0.353770	1.2:+28021000	MS.gene53537:CDS
AGACAAGAAGGAAAGTGCAG+TGG	0.661305	1.2:+28021122	MS.gene53537:CDS
AGGTGTTGGAATATGAACCA+AGG	0.714223	1.2:+28021173	MS.gene53537:CDS
ATATTGTTGATGGATTCAAA+GGG	0.573735	1.2:+28020944	None:intergenic
ATTCAAAGGGTTCTAAGGAT+GGG	0.614550	1.2:+28020957	MS.gene53537:CDS
CAAAGGGTTCTAAGGATGGG+AGG	0.621872	1.2:+28020960	MS.gene53537:CDS
CACAATGGATACACCTGTGG+TGG	0.583495	1.2:+28020988	MS.gene53537:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGAAGATCATGTCAA+TGG	+	chr1.2:28021031-28021050	MS.gene53537:CDS	30.0%
GAAATTCTGGTAAGACAAGA+AGG	+	chr1.2:28021110-28021129	MS.gene53537:CDS	35.0%
GGTTGTATGTCAAGAAATTC+TGG	+	chr1.2:28021097-28021116	MS.gene53537:CDS	35.0%
CTAATTCTTTGTTGCCTCCT+AGG	+	chr1.2:28021071-28021090	MS.gene53537:CDS	40.0%
GTGCAGTGGAATGATAAGAA+TGG	+	chr1.2:28021136-28021155	MS.gene53537:CDS	40.0%
TTACACAATGGATACACCTG+TGG	+	chr1.2:28020985-28021004	MS.gene53537:CDS	40.0%
GGATGGGAGGAATTACACAA+TGG	+	chr1.2:28020973-28020992	MS.gene53537:CDS	45.0%
TCCATAACACAAACCACCAC+AGG	-	chr1.2:28021004-28021023	None:intergenic	45.0%
CACAATGGATACACCTGTGG+TGG	+	chr1.2:28020988-28021007	MS.gene53537:CDS	50.0%
CTTGACATACAACCGCTCCT+AGG	-	chr1.2:28021091-28021110	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	28020953	28021198	28020953	ID=MS.gene53537
chr1.2	mRNA	28020953	28021198	28020953	ID=MS.gene53537.t1;Parent=MS.gene53537
chr1.2	exon	28020953	28021198	28020953	ID=MS.gene53537.t1.exon1;Parent=MS.gene53537.t1
chr1.2	CDS	28020953	28021198	28020953	ID=cds.MS.gene53537.t1;Parent=MS.gene53537.t1

Gene Sequence	>MS.gene53537 ATGGATTCAAAGGGTTCTAAGGATGGGAGGAATTACACAATGGATACACCTGTGGTGGTTTGTGTTATGGAAGATGAAAAAGTTGAAGATCATGTCAATGGTGAAGATGATAGTGATTCTAATTCTTTGTTGCCTCCTAGGAGCGGTTGTATGTCAAGAAATTCTGGTAAGACAAGAAGGAAAGTGCAGTGGAATGATAAGAATGGTAATCAACTTGCTGAGGTGTTGGAATATGAACCAAGGTAA
Protein sequence	>MS.gene53537.t1 MDSKGSKDGRNYTMDTPVVVCVMEDEKVEDHVNGEDDSDSNSLLPPRSGCMSRNSGKTRRKVQWNDKNGNQLAEVLEYEPR