Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88351.t1 | XP_013453884.1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 47 | 298 | 9.10E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88351.t1 | Q8W4Y5 | 71.8 | 252 | 69 | 1 | 1 | 252 | 46 | 295 | 2.0e-103 | 376.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88351.t1 | A0A072UQ04 | 99.6 | 252 | 1 | 0 | 1 | 252 | 47 | 298 | 6.6e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene88351 | 0.802856 | 4.60E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene88351 | 0.811998 | 5.29E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene88351 | 0.841743 | 3.95E-58 | -1.69E-46 |
| MS.gene049419 | MS.gene88351 | -0.811143 | 8.11E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene88351 | 0.812767 | 3.59E-51 | -1.69E-46 |
| MS.gene049680 | MS.gene88351 | 0.80458 | 2.02E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene88351 | 0.828054 | 1.11E-54 | -1.69E-46 |
| MS.gene050271 | MS.gene88351 | 0.818778 | 1.64E-52 | -1.69E-46 |
| MS.gene051154 | MS.gene88351 | 0.807961 | 3.91E-50 | -1.69E-46 |
| MS.gene051597 | MS.gene88351 | 0.80128 | 9.70E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene88351 | 0.83919 | 1.84E-57 | -1.69E-46 |
| MS.gene051832 | MS.gene88351 | 0.823119 | 1.64E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene88351 | 0.833444 | 5.31E-56 | -1.69E-46 |
| MS.gene052108 | MS.gene88351 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene052500 | MS.gene88351 | 0.818245 | 2.17E-52 | -1.69E-46 |
| MS.gene052502 | MS.gene88351 | 0.818598 | 1.80E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene88351 | 0.806232 | 9.09E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene88351 | 0.84765 | 1.01E-59 | -1.69E-46 |
| MS.gene052686 | MS.gene88351 | 0.819241 | 1.29E-52 | -1.69E-46 |
| MS.gene052824 | MS.gene88351 | 0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene052826 | MS.gene88351 | 0.81558 | 8.59E-52 | -1.69E-46 |
| MS.gene052889 | MS.gene88351 | 0.808349 | 3.23E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene88351 | 0.824774 | 6.73E-54 | -1.69E-46 |
| MS.gene053006 | MS.gene88351 | 0.834927 | 2.26E-56 | -1.69E-46 |
| MS.gene053045 | MS.gene88351 | 0.80267 | 5.03E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene88351 | 0.838402 | 2.94E-57 | -1.69E-46 |
| MS.gene053189 | MS.gene88351 | 0.801603 | 8.33E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene88351 | 0.819598 | 1.07E-52 | -1.69E-46 |
| MS.gene053298 | MS.gene88351 | 0.860901 | 1.50E-63 | -1.69E-46 |
| MS.gene053340 | MS.gene88351 | 0.830904 | 2.26E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene88351 | 0.978429 | 8.30E-146 | -1.69E-46 |
| MS.gene05410 | MS.gene88351 | 0.816719 | 4.78E-52 | -1.69E-46 |
| MS.gene054222 | MS.gene88351 | 0.863306 | 2.73E-64 | -1.69E-46 |
| MS.gene054479 | MS.gene88351 | 0.834312 | 3.22E-56 | -1.69E-46 |
| MS.gene05469 | MS.gene88351 | 0.810765 | 9.80E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene88351 | 0.828262 | 9.91E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene88351 | 0.827063 | 1.92E-54 | -1.69E-46 |
| MS.gene054957 | MS.gene88351 | 0.815464 | 9.12E-52 | -1.69E-46 |
| MS.gene055147 | MS.gene88351 | 0.851799 | 7.01E-61 | -1.69E-46 |
| MS.gene055148 | MS.gene88351 | 0.825779 | 3.89E-54 | -1.69E-46 |
| MS.gene055149 | MS.gene88351 | 0.818748 | 1.67E-52 | -1.69E-46 |
| MS.gene055150 | MS.gene88351 | 0.806569 | 7.72E-50 | -1.69E-46 |
| MS.gene055222 | MS.gene88351 | 0.812407 | 4.31E-51 | -1.69E-46 |
| MS.gene055226 | MS.gene88351 | 0.827902 | 1.21E-54 | -1.69E-46 |
| MS.gene05548 | MS.gene88351 | 0.811655 | 6.28E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene88351 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene88351 | 0.817325 | 3.50E-52 | -1.69E-46 |
| MS.gene05636 | MS.gene88351 | 0.817946 | 2.53E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene88351 | 0.815601 | 8.50E-52 | -1.69E-46 |
| MS.gene056605 | MS.gene88351 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene88351 | 0.802038 | 6.78E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene88351 | 0.800236 | 1.58E-48 | -1.69E-46 |
| MS.gene05689 | MS.gene88351 | 0.804302 | 2.31E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene88351 | 0.863762 | 1.97E-64 | -1.69E-46 |
| MS.gene057071 | MS.gene88351 | 0.808912 | 2.45E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene88351 | 0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene88351 | 0.832029 | 1.19E-55 | -1.69E-46 |
| MS.gene057155 | MS.gene88351 | 0.825141 | 5.51E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene88351 | 0.814681 | 1.36E-51 | -1.69E-46 |
| MS.gene057622 | MS.gene88351 | 0.811069 | 8.42E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene88351 | 0.845557 | 3.77E-59 | -1.69E-46 |
| MS.gene058008 | MS.gene88351 | 0.807775 | 4.29E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene88351 | 0.841837 | 3.73E-58 | -1.69E-46 |
| MS.gene058279 | MS.gene88351 | 0.832428 | 9.51E-56 | -1.69E-46 |
| MS.gene058498 | MS.gene88351 | 0.814932 | 1.20E-51 | -1.69E-46 |
| MS.gene058500 | MS.gene88351 | 0.802055 | 6.73E-49 | -1.69E-46 |
| MS.gene058592 | MS.gene88351 | 0.83696 | 6.89E-57 | -1.69E-46 |
| MS.gene058635 | MS.gene88351 | 0.805612 | 1.23E-49 | -1.69E-46 |
| MS.gene05878 | MS.gene88351 | 0.816217 | 6.20E-52 | -1.69E-46 |
| MS.gene059051 | MS.gene88351 | 0.831424 | 1.68E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene88351 | 0.859893 | 3.02E-63 | -1.69E-46 |
| MS.gene05956 | MS.gene88351 | 0.804174 | 2.45E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene88351 | 0.820932 | 5.28E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene88351 | -0.859336 | 4.44E-63 | -1.69E-46 |
| MS.gene059935 | MS.gene88351 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene88351 | 0.819864 | 9.29E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene88351 | 0.815445 | 9.21E-52 | -1.69E-46 |
| MS.gene06018 | MS.gene88351 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene88351 | 0.810252 | 1.26E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene88351 | 0.816528 | 5.28E-52 | -1.69E-46 |
| MS.gene060412 | MS.gene88351 | 0.856702 | 2.69E-62 | -1.69E-46 |
| MS.gene060840 | MS.gene88351 | 0.844078 | 9.45E-59 | -1.69E-46 |
| MS.gene060879 | MS.gene88351 | 0.820259 | 7.54E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene88351 | 0.808731 | 2.68E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene88351 | 0.830914 | 2.25E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene88351 | 0.845094 | 5.03E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88351.t1 | MTR_5g049230 | 99.603 | 252 | 1 | 0 | 1 | 252 | 47 | 298 | 0.0 | 509 |
| MS.gene88351.t1 | MTR_5g049240 | 86.508 | 252 | 34 | 0 | 1 | 252 | 2 | 253 | 1.04e-160 | 449 |
| MS.gene88351.t1 | MTR_5g049240 | 86.508 | 252 | 34 | 0 | 1 | 252 | 47 | 298 | 1.47e-159 | 447 |
| MS.gene88351.t1 | MTR_8g069850 | 76.984 | 252 | 58 | 0 | 1 | 252 | 47 | 298 | 3.06e-147 | 414 |
| MS.gene88351.t1 | MTR_4g086150 | 44.017 | 234 | 124 | 2 | 19 | 252 | 61 | 287 | 2.54e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88351.t1 | AT1G13580 | 69.841 | 252 | 76 | 0 | 1 | 252 | 47 | 298 | 1.03e-130 | 372 |
| MS.gene88351.t1 | AT1G13580 | 69.841 | 252 | 76 | 0 | 1 | 252 | 47 | 298 | 1.03e-130 | 372 |
| MS.gene88351.t1 | AT3G25540 | 63.922 | 255 | 88 | 2 | 1 | 252 | 47 | 300 | 2.49e-118 | 340 |
| MS.gene88351.t1 | AT3G25540 | 63.922 | 255 | 88 | 2 | 1 | 252 | 47 | 300 | 2.49e-118 | 340 |
| MS.gene88351.t1 | AT1G26200 | 56.870 | 262 | 97 | 3 | 1 | 252 | 46 | 301 | 3.54e-104 | 305 |
| MS.gene88351.t1 | AT1G26200 | 54.444 | 270 | 102 | 3 | 1 | 252 | 46 | 312 | 2.67e-101 | 298 |
| MS.gene88351.t1 | AT1G13580 | 71.354 | 192 | 55 | 0 | 1 | 192 | 47 | 238 | 1.34e-99 | 290 |
| MS.gene88351.t1 | AT3G25540 | 64.615 | 195 | 66 | 1 | 1 | 192 | 47 | 241 | 2.03e-90 | 267 |
| MS.gene88351.t1 | AT1G26200 | 60.309 | 194 | 74 | 1 | 1 | 194 | 46 | 236 | 6.60e-82 | 245 |
| MS.gene88351.t1 | AT3G19260 | 45.528 | 246 | 127 | 2 | 7 | 252 | 51 | 289 | 9.46e-73 | 224 |
Find 37 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGATTAACAAATTTA+AGG | 0.125028 | 5.3:+40933940 | MS.gene88351:CDS |
| CCATACTTGCTTTAATATTC+TGG | 0.136312 | 5.3:+40934247 | MS.gene88351:CDS |
| TGCTTGTTCTTAACATTTAT+TGG | 0.179322 | 5.3:+40935413 | MS.gene88351:CDS |
| TGATGCTACTGATGTGTTTC+TGG | 0.182167 | 5.3:+40934558 | MS.gene88351:CDS |
| GTGTCGTTTACTACCCATTT+TGG | 0.238501 | 5.3:+40934668 | MS.gene88351:CDS |
| CCAGAATATTAAAGCAAGTA+TGG | 0.250823 | 5.3:-40934247 | None:intergenic |
| ACTGGTTGCCACCTTGAAAT+TGG | 0.253838 | 5.3:+40935330 | MS.gene88351:CDS |
| ACACTCAGGTTTGTTCGAAT+TGG | 0.325304 | 5.3:+40934514 | MS.gene88351:intron |
| GAAACAAGACGCTCTGACTT+TGG | 0.337924 | 5.3:+40934270 | MS.gene88351:CDS |
| GTACTTCGAAGAACCCAAAA+TGG | 0.344972 | 5.3:-40934682 | None:intergenic |
| CTGATTCTTCGGATGCTTGT+TGG | 0.351437 | 5.3:+40935442 | MS.gene88351:CDS |
| CCTTGAAATTGGAAAATCAT+TGG | 0.362965 | 5.3:+40935341 | MS.gene88351:CDS |
| AAACAAGACGCTCTGACTTT+GGG | 0.369876 | 5.3:+40934271 | MS.gene88351:CDS |
| CATACTTGCTTTAATATTCT+GGG | 0.380439 | 5.3:+40934248 | MS.gene88351:CDS |
| TTGGAAAATCATTGGGTGAA+TGG | 0.396407 | 5.3:+40935349 | MS.gene88351:CDS |
| ACTGATGTGTTTCTGGAGAT+AGG | 0.414778 | 5.3:+40934565 | MS.gene88351:CDS |
| CTTGAAATTGGAAAATCATT+GGG | 0.421846 | 5.3:+40935342 | MS.gene88351:CDS |
| ATTGGTGGGTGCTGATTCTT+CGG | 0.444061 | 5.3:+40935431 | MS.gene88351:CDS |
| TCTGGCCATCTCTGATTCCC+TGG | 0.444917 | 5.3:-40934067 | None:intergenic |
| TCTTTGTTGCAGCTATGAAC+TGG | 0.456363 | 5.3:+40935312 | MS.gene88351:intron |
| CTGTAACATACGACGAGCCT+TGG | 0.465040 | 5.3:+40934014 | MS.gene88351:CDS |
| CTGATGTGTTTCTGGAGATA+GGG | 0.490323 | 5.3:+40934566 | MS.gene88351:CDS |
| TTTGGGTTCTTCGAAGTACA+AGG | 0.496763 | 5.3:+40934686 | MS.gene88351:CDS |
| TTGTTCTTAACATTTATTGG+TGG | 0.510641 | 5.3:+40935416 | MS.gene88351:CDS |
| GTTAGTGAAGATATACGATC+TGG | 0.513493 | 5.3:+40935487 | MS.gene88351:CDS |
| GTAGTAAACGACACGTAGTA+TGG | 0.517462 | 5.3:-40934659 | None:intergenic |
| GGGCTGTATATGTATGGTGC+TGG | 0.528738 | 5.3:+40934210 | MS.gene88351:CDS |
| TGTTCTTAACATTTATTGGT+GGG | 0.530572 | 5.3:+40935417 | MS.gene88351:CDS |
| TTGAAAGGGCTGTATATGTA+TGG | 0.545225 | 5.3:+40934204 | MS.gene88351:CDS |
| TACTTCGAAGAACCCAAAAT+GGG | 0.551224 | 5.3:-40934681 | None:intergenic |
| TTGGGCCAGGGAATCAGAGA+TGG | 0.559128 | 5.3:+40934062 | MS.gene88351:CDS |
| GTTGGTCAAATTCGAGCAAG+AGG | 0.587622 | 5.3:+40935460 | MS.gene88351:CDS |
| TTGGTCAAATTCGAGCAAGA+GGG | 0.591303 | 5.3:+40935461 | MS.gene88351:CDS |
| ATGTGTAGAAATTGGCCAGA+CGG | 0.612314 | 5.3:+40933864 | None:intergenic |
| AAATGTAGGATAACACAATG+AGG | 0.666787 | 5.3:-40934326 | None:intergenic |
| GGGAAAATGTCCAAATACAG+CGG | 0.695232 | 5.3:+40934586 | MS.gene88351:CDS |
| ACAAATTTAAGGAATCAGCG+TGG | 0.724000 | 5.3:+40933951 | MS.gene88351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAGATTAACAAATTTA+AGG | + | chr5.3:40933940-40933959 | MS.gene88351:CDS | 15.0% |
| !! | AATAAATTACTCAGTTTATA+CGG | + | chr5.3:40935254-40935273 | MS.gene88351:intron | 15.0% |
| !! | ATATCCTTTAAATTTACATT+TGG | - | chr5.3:40934823-40934842 | None:intergenic | 15.0% |
| !! | ATTGAAAAGTTAAGTAAAAT+AGG | - | chr5.3:40934494-40934513 | None:intergenic | 15.0% |
| !! | TATCCTTTAAATTTACATTT+GGG | - | chr5.3:40934822-40934841 | None:intergenic | 15.0% |
| !!! | TACTGATACAAAATATTTTT+GGG | + | chr5.3:40934039-40934058 | MS.gene88351:CDS | 15.0% |
| !!! | TTACTGATACAAAATATTTT+TGG | + | chr5.3:40934038-40934057 | MS.gene88351:CDS | 15.0% |
| !! | AATCCCAAATGTAAATTTAA+AGG | + | chr5.3:40934816-40934835 | MS.gene88351:intron | 20.0% |
| !! | TATATGAGTAAAGTATAAAG+TGG | + | chr5.3:40935121-40935140 | MS.gene88351:intron | 20.0% |
| !! | TCTTGTAAAAAAGTAATCAT+TGG | + | chr5.3:40934866-40934885 | MS.gene88351:intron | 20.0% |
| !! | TTCAATCTGAAAATTGTAAA+TGG | - | chr5.3:40934183-40934202 | None:intergenic | 20.0% |
| !! | TTTATACTTTACTCATATAG+AGG | - | chr5.3:40935120-40935139 | None:intergenic | 20.0% |
| !! | TTTGTTAAAATTTCAACTCT+TGG | - | chr5.3:40935152-40935171 | None:intergenic | 20.0% |
| !!! | ATACAAAATATTTTTGGGTT+GGG | + | chr5.3:40934044-40934063 | MS.gene88351:CDS | 20.0% |
| !!! | ATTTTCAGATTGAAATTGAA+AGG | + | chr5.3:40934189-40934208 | MS.gene88351:intron | 20.0% |
| !!! | GAAATGTGTTTATTTTCTAT+CGG | + | chr5.3:40933973-40933992 | MS.gene88351:CDS | 20.0% |
| !!! | TTTTCAGATTGAAATTGAAA+GGG | + | chr5.3:40934190-40934209 | MS.gene88351:intron | 20.0% |
| !!! | TTTTTTTAACTTCCACTAAA+TGG | - | chr5.3:40934798-40934817 | None:intergenic | 20.0% |
| ! | AAAAAGTAATCATTGGTGAA+TGG | + | chr5.3:40934873-40934892 | MS.gene88351:intron | 25.0% |
| ! | AAAATAGGAAATTGAACTAG+TGG | - | chr5.3:40934479-40934498 | None:intergenic | 25.0% |
| ! | ACAACTGACAAATAACAATT+GGG | - | chr5.3:40934125-40934144 | None:intergenic | 25.0% |
| ! | CATACTTGCTTTAATATTCT+GGG | + | chr5.3:40934248-40934267 | MS.gene88351:CDS | 25.0% |
| ! | CTAGGTGAATTATATAATGT+CGG | + | chr5.3:40934766-40934785 | MS.gene88351:intron | 25.0% |
| ! | CTTGAAATTGGAAAATCATT+GGG | + | chr5.3:40935342-40935361 | MS.gene88351:CDS | 25.0% |
| ! | TGCTTGTTCTTAACATTTAT+TGG | + | chr5.3:40935413-40935432 | MS.gene88351:CDS | 25.0% |
| ! | TGTTCTTAACATTTATTGGT+GGG | + | chr5.3:40935417-40935436 | MS.gene88351:CDS | 25.0% |
| ! | TTGTTCTTAACATTTATTGG+TGG | + | chr5.3:40935416-40935435 | MS.gene88351:CDS | 25.0% |
| !! | TATTTTGTATCAGTAAACCA+AGG | - | chr5.3:40934034-40934053 | None:intergenic | 25.0% |
| !! | TCTTACTTAATCTTTTGATC+TGG | - | chr5.3:40934088-40934107 | None:intergenic | 25.0% |
| !! | TTGTGTTATCCTACATTTTT+AGG | + | chr5.3:40934331-40934350 | MS.gene88351:CDS | 25.0% |
| !!! | GATACAAAATATTTTTGGGT+TGG | + | chr5.3:40934043-40934062 | MS.gene88351:CDS | 25.0% |
| AAATGTAGGATAACACAATG+AGG | - | chr5.3:40934329-40934348 | None:intergenic | 30.0% | |
| CCAGAATATTAAAGCAAGTA+TGG | - | chr5.3:40934250-40934269 | None:intergenic | 30.0% | |
| CCATACTTGCTTTAATATTC+TGG | + | chr5.3:40934247-40934266 | MS.gene88351:CDS | 30.0% | |
| CCTTGAAATTGGAAAATCAT+TGG | + | chr5.3:40935341-40935360 | MS.gene88351:CDS | 30.0% | |
| CTAAACTCTTAACAAAACAG+AGG | + | chr5.3:40934923-40934942 | MS.gene88351:intron | 30.0% | |
| GAAATCACACCTAAAAATGT+AGG | - | chr5.3:40934343-40934362 | None:intergenic | 30.0% | |
| GACAACTGACAAATAACAAT+TGG | - | chr5.3:40934126-40934145 | None:intergenic | 30.0% | |
| ! | ATGATTTTCCAATTTCAAGG+TGG | - | chr5.3:40935341-40935360 | None:intergenic | 30.0% |
| ! | CCAATGATTTTCCAATTTCA+AGG | - | chr5.3:40935344-40935363 | None:intergenic | 30.0% |
| ! | CTTAACTTTTCAATACACTC+AGG | + | chr5.3:40934500-40934519 | MS.gene88351:intron | 30.0% |
| ! | CTTTACCTTTAGGAAATTGT+CGG | + | chr5.3:40934376-40934395 | MS.gene88351:intron | 30.0% |
| !! | CTCTGTTTTGTTAAGAGTTT+AGG | - | chr5.3:40934925-40934944 | None:intergenic | 30.0% |
| !!! | ATATGTTAGCTTTTCAACAG+TGG | + | chr5.3:40935072-40935091 | MS.gene88351:intron | 30.0% |
| !!! | GGCTGTGCAATTTAATTTTT+TGG | + | chr5.3:40934944-40934963 | MS.gene88351:intron | 30.0% |
| AATCATTGGTGAATGGTGAT+AGG | + | chr5.3:40934880-40934899 | MS.gene88351:intron | 35.0% | |
| ACAAATTTAAGGAATCAGCG+TGG | + | chr5.3:40933951-40933970 | MS.gene88351:CDS | 35.0% | |
| ACCTAGATTAGCAACTACAA+TGG | - | chr5.3:40934752-40934771 | None:intergenic | 35.0% | |
| CAGTTGTTTAATCCATCATG+AGG | - | chr5.3:40935018-40935037 | None:intergenic | 35.0% | |
| CGACAATTTCCTAAAGGTAA+AGG | - | chr5.3:40934378-40934397 | None:intergenic | 35.0% | |
| GGTGAATTATATAATGTCGG+CGG | + | chr5.3:40934769-40934788 | MS.gene88351:intron | 35.0% | |
| GTCTAAATGCCTTTACCTTT+AGG | + | chr5.3:40934366-40934385 | MS.gene88351:intron | 35.0% | |
| TACAAAAAGTGACCTCATGA+TGG | + | chr5.3:40935003-40935022 | MS.gene88351:intron | 35.0% | |
| TACTTCGAAGAACCCAAAAT+GGG | - | chr5.3:40934684-40934703 | None:intergenic | 35.0% | |
| TTGAAAGGGCTGTATATGTA+TGG | + | chr5.3:40934204-40934223 | MS.gene88351:CDS | 35.0% | |
| TTGGAAAATCATTGGGTGAA+TGG | + | chr5.3:40935349-40935368 | MS.gene88351:CDS | 35.0% | |
| !! | AGACGGTTCATTTTTGGAAA+GGG | + | chr5.3:40933881-40933900 | MS.gene88351:CDS | 35.0% |
| !! | GCAACTGAGGGAATTTTAAT+AGG | - | chr5.3:40934730-40934749 | None:intergenic | 35.0% |
| !! | TGTCGTTTACTACCCATTTT+GGG | + | chr5.3:40934669-40934688 | MS.gene88351:CDS | 35.0% |
| AAACAAGACGCTCTGACTTT+GGG | + | chr5.3:40934271-40934290 | MS.gene88351:CDS | 40.0% | |
| AGACACCGACAATTTCCTAA+AGG | - | chr5.3:40934384-40934403 | None:intergenic | 40.0% | |
| CTTTCCAAAAATGAACCGTC+TGG | - | chr5.3:40933882-40933901 | None:intergenic | 40.0% | |
| GCCATTGTAGTTGCTAATCT+AGG | + | chr5.3:40934748-40934767 | MS.gene88351:intron | 40.0% | |
| GGGAAAATGTCCAAATACAG+CGG | + | chr5.3:40934586-40934605 | MS.gene88351:CDS | 40.0% | |
| GTACTTCGAAGAACCCAAAA+TGG | - | chr5.3:40934685-40934704 | None:intergenic | 40.0% | |
| GTAGTAAACGACACGTAGTA+TGG | - | chr5.3:40934662-40934681 | None:intergenic | 40.0% | |
| TCTTTGTTGCAGCTATGAAC+TGG | + | chr5.3:40935312-40935331 | MS.gene88351:intron | 40.0% | |
| TGATGCTACTGATGTGTTTC+TGG | + | chr5.3:40934558-40934577 | MS.gene88351:CDS | 40.0% | |
| TTGGTCAAATTCGAGCAAGA+GGG | + | chr5.3:40935461-40935480 | MS.gene88351:CDS | 40.0% | |
| TTGGTGAATGGTGATAGGAT+AGG | + | chr5.3:40934885-40934904 | MS.gene88351:intron | 40.0% | |
| ! | ACACTCAGGTTTGTTCGAAT+TGG | + | chr5.3:40934514-40934533 | MS.gene88351:intron | 40.0% |
| ! | TTTGGGTTCTTCGAAGTACA+AGG | + | chr5.3:40934686-40934705 | MS.gene88351:CDS | 40.0% |
| !! | ACTGATGTGTTTCTGGAGAT+AGG | + | chr5.3:40934565-40934584 | MS.gene88351:CDS | 40.0% |
| !! | CAGACGGTTCATTTTTGGAA+AGG | + | chr5.3:40933880-40933899 | MS.gene88351:CDS | 40.0% |
| !! | CTGATGTGTTTCTGGAGATA+GGG | + | chr5.3:40934566-40934585 | MS.gene88351:CDS | 40.0% |
| !! | TTTTTCAGCACCGCTGTATT+TGG | - | chr5.3:40934599-40934618 | None:intergenic | 40.0% |
| !!! | AAATATTTTTGGGTTGGGCC+AGG | + | chr5.3:40934049-40934068 | MS.gene88351:CDS | 40.0% |
| !!! | AATATTTTTGGGTTGGGCCA+GGG | + | chr5.3:40934050-40934069 | MS.gene88351:CDS | 40.0% |
| !!! | GTGTCGTTTACTACCCATTT+TGG | + | chr5.3:40934668-40934687 | MS.gene88351:CDS | 40.0% |
| ACTGGTTGCCACCTTGAAAT+TGG | + | chr5.3:40935330-40935349 | MS.gene88351:CDS | 45.0% | |
| AGCAACTACAATGGCAACTG+AGG | - | chr5.3:40934743-40934762 | None:intergenic | 45.0% | |
| CTGATTCTTCGGATGCTTGT+TGG | + | chr5.3:40935442-40935461 | MS.gene88351:CDS | 45.0% | |
| GAAACAAGACGCTCTGACTT+TGG | + | chr5.3:40934270-40934289 | MS.gene88351:CDS | 45.0% | |
| GCAACTACAATGGCAACTGA+GGG | - | chr5.3:40934742-40934761 | None:intergenic | 45.0% | |
| GTTGGTCAAATTCGAGCAAG+AGG | + | chr5.3:40935460-40935479 | MS.gene88351:CDS | 45.0% | |
| ! | GGAAATTGTCGGTGTCTCTA+CGG | + | chr5.3:40934387-40934406 | MS.gene88351:intron | 45.0% |
| ! | TTGGCCAGACGGTTCATTTT+TGG | + | chr5.3:40933875-40933894 | MS.gene88351:CDS | 45.0% |
| !! | ATTGGTGGGTGCTGATTCTT+CGG | + | chr5.3:40935431-40935450 | MS.gene88351:CDS | 45.0% |
| CTGTAACATACGACGAGCCT+TGG | + | chr5.3:40934014-40934033 | MS.gene88351:CDS | 50.0% | |
| GGGCTGTATATGTATGGTGC+TGG | + | chr5.3:40934210-40934229 | MS.gene88351:CDS | 50.0% | |
| TGTCGGCGGTAACCATTTAG+TGG | + | chr5.3:40934783-40934802 | MS.gene88351:intron | 50.0% | |
| ! | GTCGGTGTCTCTACGGAAAT+TGG | + | chr5.3:40934394-40934413 | MS.gene88351:intron | 50.0% |
| TCTGGCCATCTCTGATTCCC+TGG | - | chr5.3:40934070-40934089 | None:intergenic | 55.0% | |
| TTGGGCCAGGGAATCAGAGA+TGG | + | chr5.3:40934062-40934081 | MS.gene88351:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 40933872 | 40935508 | 40933872 | ID=MS.gene88351 |
| chr5.3 | mRNA | 40933872 | 40935508 | 40933872 | ID=MS.gene88351.t1;Parent=MS.gene88351 |
| chr5.3 | exon | 40933872 | 40934101 | 40933872 | ID=MS.gene88351.t1.exon1;Parent=MS.gene88351.t1 |
| chr5.3 | CDS | 40933872 | 40934101 | 40933872 | ID=cds.MS.gene88351.t1;Parent=MS.gene88351.t1 |
| chr5.3 | exon | 40934197 | 40934352 | 40934197 | ID=MS.gene88351.t1.exon2;Parent=MS.gene88351.t1 |
| chr5.3 | CDS | 40934197 | 40934352 | 40934197 | ID=cds.MS.gene88351.t1;Parent=MS.gene88351.t1 |
| chr5.3 | exon | 40934522 | 40934707 | 40934522 | ID=MS.gene88351.t1.exon3;Parent=MS.gene88351.t1 |
| chr5.3 | CDS | 40934522 | 40934707 | 40934522 | ID=cds.MS.gene88351.t1;Parent=MS.gene88351.t1 |
| chr5.3 | exon | 40935324 | 40935508 | 40935324 | ID=MS.gene88351.t1.exon4;Parent=MS.gene88351.t1 |
| chr5.3 | CDS | 40935324 | 40935508 | 40935324 | ID=cds.MS.gene88351.t1;Parent=MS.gene88351.t1 |
| Gene Sequence |
| Protein sequence |
