Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71666.t1 | KEH44076.1 | 84.5 | 194 | 2 | 2 | 1 | 166 | 107 | 300 | 3.60E-76 | 294.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71666.t1 | P93149 | 36.8 | 193 | 85 | 4 | 2 | 166 | 103 | 286 | 6.5e-26 | 118.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71666.t1 | A0A072VQW6 | 84.5 | 194 | 2 | 2 | 1 | 166 | 107 | 300 | 2.6e-76 | 294.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene71666 | 0.807776 | 4.28E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene71666 | 0.818864 | 1.57E-52 | -1.69E-46 |
| MS.gene049232 | MS.gene71666 | 0.807678 | 4.49E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene71666 | 0.827125 | 1.86E-54 | -1.69E-46 |
| MS.gene049369 | MS.gene71666 | 0.846893 | 1.63E-59 | -1.69E-46 |
| MS.gene049396 | MS.gene71666 | 0.833306 | 5.75E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene71666 | 0.822104 | 2.83E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene71666 | 0.807879 | 4.07E-50 | -1.69E-46 |
| MS.gene049907 | MS.gene71666 | 0.839037 | 2.01E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene71666 | 0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene050375 | MS.gene71666 | 0.824441 | 8.06E-54 | -1.69E-46 |
| MS.gene050380 | MS.gene71666 | -0.816592 | 5.11E-52 | -1.69E-46 |
| MS.gene050499 | MS.gene71666 | 0.872557 | 2.90E-67 | -1.69E-46 |
| MS.gene050502 | MS.gene71666 | 0.815777 | 7.77E-52 | -1.69E-46 |
| MS.gene050520 | MS.gene71666 | 0.880266 | 6.32E-70 | -1.69E-46 |
| MS.gene050593 | MS.gene71666 | 0.811927 | 5.48E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene71666 | 0.80669 | 7.28E-50 | -1.69E-46 |
| MS.gene050704 | MS.gene71666 | 0.81414 | 1.79E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene71666 | 0.839155 | 1.88E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene71666 | 0.834072 | 3.70E-56 | -1.69E-46 |
| MS.gene05081 | MS.gene71666 | 0.80638 | 8.46E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene71666 | 0.822056 | 2.91E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene71666 | 0.823468 | 1.36E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene71666 | 0.833754 | 4.45E-56 | -1.69E-46 |
| MS.gene05105 | MS.gene71666 | 0.825404 | 4.77E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene71666 | 0.865396 | 6.09E-65 | -1.69E-46 |
| MS.gene051360 | MS.gene71666 | 0.848237 | 6.96E-60 | -1.69E-46 |
| MS.gene051387 | MS.gene71666 | 0.837219 | 5.91E-57 | -1.69E-46 |
| MS.gene051509 | MS.gene71666 | 0.831658 | 1.47E-55 | -1.69E-46 |
| MS.gene051692 | MS.gene71666 | 0.804722 | 1.88E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene71666 | 0.806314 | 8.73E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene71666 | 0.825209 | 5.31E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene71666 | 0.812373 | 4.38E-51 | -1.69E-46 |
| MS.gene051941 | MS.gene71666 | 0.819057 | 1.42E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene71666 | 0.809934 | 1.48E-50 | -1.69E-46 |
| MS.gene052346 | MS.gene71666 | 0.8306 | 2.68E-55 | -1.69E-46 |
| MS.gene052413 | MS.gene71666 | 0.821107 | 4.81E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene71666 | 0.837503 | 5.00E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene71666 | 0.812129 | 4.95E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene71666 | 0.802354 | 5.84E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene71666 | 0.80713 | 5.87E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene71666 | 0.82514 | 5.51E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene71666 | 0.80934 | 1.99E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene71666 | 0.834178 | 3.48E-56 | -1.69E-46 |
| MS.gene052966 | MS.gene71666 | 0.840188 | 1.01E-57 | -1.69E-46 |
| MS.gene052982 | MS.gene71666 | 0.824064 | 9.88E-54 | -1.69E-46 |
| MS.gene052999 | MS.gene71666 | 0.8418 | 3.81E-58 | -1.69E-46 |
| MS.gene053018 | MS.gene71666 | 0.809713 | 1.65E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene71666 | 0.835871 | 1.30E-56 | -1.69E-46 |
| MS.gene053203 | MS.gene71666 | 0.806203 | 9.22E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene71666 | 0.820305 | 7.36E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene71666 | 0.822327 | 2.51E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene71666 | 0.8179 | 2.59E-52 | -1.69E-46 |
| MS.gene053318 | MS.gene71666 | 0.855164 | 7.58E-62 | -1.69E-46 |
| MS.gene05335 | MS.gene71666 | 0.812726 | 3.67E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene71666 | 0.826646 | 2.42E-54 | -1.69E-46 |
| MS.gene053449 | MS.gene71666 | 0.829326 | 5.48E-55 | -1.69E-46 |
| MS.gene053505 | MS.gene71666 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene71666 | 0.852524 | 4.36E-61 | -1.69E-46 |
| MS.gene053626 | MS.gene71666 | 0.830611 | 2.66E-55 | -1.69E-46 |
| MS.gene053813 | MS.gene71666 | 0.86119 | 1.22E-63 | -1.69E-46 |
| MS.gene053824 | MS.gene71666 | 0.840603 | 7.87E-58 | -1.69E-46 |
| MS.gene054003 | MS.gene71666 | 0.816925 | 4.30E-52 | -1.69E-46 |
| MS.gene054408 | MS.gene71666 | 0.835348 | 1.77E-56 | -1.69E-46 |
| MS.gene054486 | MS.gene71666 | 0.817705 | 2.87E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene71666 | 0.809477 | 1.86E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene71666 | 0.824791 | 6.67E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene71666 | 0.814359 | 1.60E-51 | -1.69E-46 |
| MS.gene054927 | MS.gene71666 | 0.82475 | 6.81E-54 | -1.69E-46 |
| MS.gene05492 | MS.gene71666 | 0.8516 | 7.99E-61 | -1.69E-46 |
| MS.gene05494 | MS.gene71666 | 0.838949 | 2.12E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene71666 | 0.834513 | 2.87E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene71666 | 0.833675 | 4.65E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene71666 | 0.808943 | 2.42E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene71666 | 0.800324 | 1.52E-48 | -1.69E-46 |
| MS.gene055722 | MS.gene71666 | 0.852564 | 4.25E-61 | -1.69E-46 |
| MS.gene055741 | MS.gene71666 | 0.815584 | 8.58E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene71666 | 0.810619 | 1.05E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene71666 | 0.86774 | 1.10E-65 | -1.69E-46 |
| MS.gene055911 | MS.gene71666 | 0.873609 | 1.29E-67 | -1.69E-46 |
| MS.gene055941 | MS.gene71666 | 0.818987 | 1.47E-52 | -1.69E-46 |
| MS.gene05601 | MS.gene71666 | 0.849785 | 2.59E-60 | -1.69E-46 |
| MS.gene056166 | MS.gene71666 | 0.868468 | 6.38E-66 | -1.69E-46 |
| MS.gene056422 | MS.gene71666 | 0.869784 | 2.39E-66 | -1.69E-46 |
| MS.gene056446 | MS.gene71666 | 0.803769 | 2.98E-49 | -1.69E-46 |
| MS.gene056448 | MS.gene71666 | 0.85699 | 2.21E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene71666 | 0.805198 | 1.50E-49 | -1.69E-46 |
| MS.gene056510 | MS.gene71666 | 0.803342 | 3.65E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene71666 | 0.823477 | 1.36E-53 | -1.69E-46 |
| MS.gene056878 | MS.gene71666 | 0.823884 | 1.09E-53 | -1.69E-46 |
| MS.gene056942 | MS.gene71666 | 0.840472 | 8.52E-58 | -1.69E-46 |
| MS.gene056946 | MS.gene71666 | 0.803186 | 3.93E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene71666 | 0.818562 | 1.84E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene71666 | 0.824095 | 9.72E-54 | -1.69E-46 |
| MS.gene057086 | MS.gene71666 | 0.820976 | 5.16E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene71666 | 0.804661 | 1.94E-49 | -1.69E-46 |
| MS.gene057285 | MS.gene71666 | 0.803417 | 3.52E-49 | -1.69E-46 |
| MS.gene057289 | MS.gene71666 | 0.828756 | 7.53E-55 | -1.69E-46 |
| MS.gene057331 | MS.gene71666 | 0.801872 | 7.34E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene71666 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene71666 | 0.817925 | 2.56E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene71666 | 0.821251 | 4.46E-53 | -1.69E-46 |
| MS.gene05787 | MS.gene71666 | 0.81369 | 2.25E-51 | -1.69E-46 |
| MS.gene057926 | MS.gene71666 | 0.801751 | 7.77E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene71666 | 0.851225 | 1.02E-60 | -1.69E-46 |
| MS.gene058130 | MS.gene71666 | 0.838533 | 2.72E-57 | -1.69E-46 |
| MS.gene058323 | MS.gene71666 | 0.804539 | 2.06E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene71666 | 0.802465 | 5.54E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene71666 | 0.801541 | 8.58E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene71666 | 0.850918 | 1.24E-60 | -1.69E-46 |
| MS.gene058444 | MS.gene71666 | 0.801178 | 1.02E-48 | -1.69E-46 |
| MS.gene058700 | MS.gene71666 | 0.830025 | 3.71E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene71666 | 0.836532 | 8.86E-57 | -1.69E-46 |
| MS.gene058995 | MS.gene71666 | 0.818724 | 1.69E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene71666 | 0.809409 | 1.92E-50 | -1.69E-46 |
| MS.gene059305 | MS.gene71666 | 0.828653 | 7.98E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene71666 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene71666 | 0.852784 | 3.68E-61 | -1.69E-46 |
| MS.gene059368 | MS.gene71666 | 0.868155 | 8.06E-66 | -1.69E-46 |
| MS.gene059420 | MS.gene71666 | 0.805303 | 1.42E-49 | -1.69E-46 |
| MS.gene059455 | MS.gene71666 | 0.806325 | 8.69E-50 | -1.69E-46 |
| MS.gene059517 | MS.gene71666 | 0.845368 | 4.24E-59 | -1.69E-46 |
| MS.gene059536 | MS.gene71666 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene71666 | 0.833508 | 5.12E-56 | -1.69E-46 |
| MS.gene059680 | MS.gene71666 | 0.861411 | 1.05E-63 | -1.69E-46 |
| MS.gene059711 | MS.gene71666 | 0.875451 | 3.05E-68 | -1.69E-46 |
| MS.gene059718 | MS.gene71666 | 0.810213 | 1.29E-50 | -1.69E-46 |
| MS.gene059749 | MS.gene71666 | 0.817203 | 3.73E-52 | -1.69E-46 |
| MS.gene059801 | MS.gene71666 | 0.813502 | 2.48E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene71666 | 0.809054 | 2.29E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene71666 | 0.81056 | 1.09E-50 | -1.69E-46 |
| MS.gene060193 | MS.gene71666 | 0.803523 | 3.35E-49 | -1.69E-46 |
| MS.gene060356 | MS.gene71666 | 0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene71666 | 0.816638 | 4.99E-52 | -1.69E-46 |
| MS.gene060401 | MS.gene71666 | 0.831592 | 1.53E-55 | -1.69E-46 |
| MS.gene060482 | MS.gene71666 | 0.865174 | 7.15E-65 | -1.69E-46 |
| MS.gene060778 | MS.gene71666 | 0.810987 | 8.77E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene71666 | 0.805334 | 1.40E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene71666 | 0.801485 | 8.81E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene71666 | 0.825472 | 4.60E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene71666 | 0.909739 | 4.08E-82 | -1.69E-46 |
| MS.gene06092 | MS.gene71666 | 0.812178 | 4.83E-51 | -1.69E-46 |
| MS.gene06097 | MS.gene71666 | 0.817658 | 2.94E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene71666 | 0.806707 | 7.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71666.t1 | MTR_1g107305 | 84.536 | 194 | 2 | 2 | 1 | 166 | 107 | 300 | 4.50e-110 | 318 |
| MS.gene71666.t1 | MTR_1g107295 | 83.505 | 194 | 4 | 2 | 1 | 166 | 107 | 300 | 3.13e-105 | 311 |
| MS.gene71666.t1 | MTR_4g062510 | 77.835 | 194 | 15 | 2 | 1 | 166 | 106 | 299 | 6.83e-92 | 277 |
| MS.gene71666.t1 | MTR_4g062500 | 65.285 | 193 | 39 | 2 | 1 | 166 | 104 | 295 | 2.50e-78 | 242 |
| MS.gene71666.t1 | MTR_7g028020 | 41.667 | 192 | 75 | 4 | 2 | 166 | 102 | 283 | 1.17e-37 | 135 |
| MS.gene71666.t1 | MTR_7g027960 | 41.146 | 192 | 76 | 4 | 2 | 166 | 102 | 283 | 4.26e-37 | 133 |
| MS.gene71666.t1 | MTR_3g020780 | 35.484 | 186 | 91 | 2 | 8 | 166 | 111 | 294 | 3.05e-35 | 128 |
| MS.gene71666.t1 | MTR_7g092620 | 38.068 | 176 | 78 | 3 | 2 | 150 | 104 | 275 | 3.97e-34 | 125 |
| MS.gene71666.t1 | MTR_4g062530 | 38.860 | 193 | 71 | 5 | 4 | 166 | 107 | 282 | 2.02e-33 | 122 |
| MS.gene71666.t1 | MTR_0181s0030 | 35.789 | 190 | 87 | 6 | 4 | 166 | 106 | 287 | 5.10e-29 | 111 |
| MS.gene71666.t1 | MTR_0171s0020 | 31.959 | 194 | 98 | 3 | 1 | 166 | 106 | 293 | 3.80e-28 | 108 |
| MS.gene71666.t1 | MTR_0171s0010 | 32.474 | 194 | 97 | 3 | 1 | 166 | 106 | 293 | 1.10e-27 | 107 |
| MS.gene71666.t1 | MTR_7g056103 | 33.333 | 189 | 92 | 4 | 3 | 164 | 105 | 286 | 4.14e-26 | 103 |
| MS.gene71666.t1 | MTR_8g036185 | 30.769 | 182 | 98 | 2 | 8 | 162 | 111 | 291 | 1.04e-25 | 102 |
| MS.gene71666.t1 | MTR_0171s0030 | 28.796 | 191 | 102 | 3 | 4 | 166 | 21 | 205 | 9.08e-24 | 96.3 |
| MS.gene71666.t1 | MTR_8g468780 | 29.534 | 193 | 98 | 6 | 4 | 166 | 38 | 222 | 8.72e-21 | 88.2 |
| MS.gene71666.t1 | MTR_4g088160 | 29.189 | 185 | 86 | 5 | 4 | 158 | 109 | 278 | 1.57e-20 | 87.8 |
| MS.gene71666.t1 | MTR_4g088195 | 27.461 | 193 | 95 | 5 | 4 | 166 | 109 | 286 | 4.91e-19 | 83.6 |
| MS.gene71666.t1 | MTR_8g469300 | 27.461 | 193 | 102 | 6 | 4 | 166 | 107 | 291 | 6.76e-18 | 80.1 |
| MS.gene71666.t1 | MTR_4g088170 | 26.425 | 193 | 97 | 5 | 4 | 166 | 109 | 286 | 1.74e-17 | 79.0 |
| MS.gene71666.t1 | MTR_1g442730 | 27.273 | 187 | 105 | 3 | 3 | 166 | 106 | 284 | 1.84e-16 | 75.9 |
| MS.gene71666.t1 | MTR_3g057980 | 26.257 | 179 | 100 | 4 | 4 | 157 | 109 | 280 | 1.59e-14 | 70.5 |
| MS.gene71666.t1 | MTR_1g035190 | 25.806 | 186 | 105 | 6 | 3 | 164 | 92 | 268 | 1.63e-14 | 70.5 |
| MS.gene71666.t1 | MTR_1g035140 | 26.115 | 157 | 91 | 2 | 3 | 136 | 109 | 263 | 1.66e-14 | 70.5 |
| MS.gene71666.t1 | MTR_7g092600 | 30.556 | 180 | 96 | 5 | 10 | 166 | 117 | 290 | 2.94e-14 | 69.7 |
| MS.gene71666.t1 | MTR_3g076550 | 29.730 | 185 | 92 | 7 | 4 | 159 | 108 | 283 | 4.30e-14 | 69.3 |
| MS.gene71666.t1 | MTR_3g058000 | 29.143 | 175 | 92 | 5 | 7 | 157 | 114 | 280 | 6.39e-14 | 68.6 |
| MS.gene71666.t1 | MTR_3g025230 | 26.623 | 154 | 81 | 2 | 8 | 129 | 108 | 261 | 8.47e-14 | 68.6 |
| MS.gene71666.t1 | MTR_5g018980 | 27.072 | 181 | 103 | 4 | 4 | 159 | 109 | 285 | 9.37e-14 | 68.2 |
| MS.gene71666.t1 | MTR_3g024520 | 26.623 | 154 | 81 | 2 | 8 | 129 | 108 | 261 | 1.22e-13 | 67.8 |
| MS.gene71666.t1 | MTR_3g058240 | 25.568 | 176 | 100 | 4 | 7 | 158 | 77 | 245 | 1.41e-13 | 67.8 |
| MS.gene71666.t1 | MTR_0554s0020 | 27.097 | 155 | 85 | 4 | 3 | 132 | 109 | 260 | 5.55e-13 | 65.9 |
| MS.gene71666.t1 | MTR_1g023700 | 34.524 | 84 | 55 | 0 | 3 | 86 | 105 | 188 | 5.78e-13 | 65.9 |
| MS.gene71666.t1 | MTR_3g058380 | 24.022 | 179 | 104 | 4 | 3 | 157 | 28 | 198 | 7.32e-13 | 65.5 |
| MS.gene71666.t1 | MTR_6g035115 | 31.481 | 108 | 68 | 2 | 3 | 110 | 109 | 210 | 8.69e-13 | 65.5 |
| MS.gene71666.t1 | MTR_3g058230 | 24.581 | 179 | 101 | 5 | 3 | 157 | 37 | 205 | 2.28e-12 | 64.3 |
| MS.gene71666.t1 | MTR_3g058210 | 26.257 | 179 | 101 | 6 | 3 | 157 | 109 | 280 | 3.61e-12 | 63.5 |
| MS.gene71666.t1 | MTR_5g019010 | 26.519 | 181 | 103 | 3 | 3 | 159 | 108 | 282 | 8.21e-12 | 62.8 |
| MS.gene71666.t1 | MTR_3g057900 | 25.843 | 178 | 102 | 5 | 4 | 157 | 109 | 280 | 8.50e-12 | 62.8 |
| MS.gene71666.t1 | MTR_8g012585 | 24.479 | 192 | 101 | 6 | 8 | 164 | 50 | 232 | 1.16e-11 | 62.0 |
| MS.gene71666.t1 | MTR_1g023730 | 30.952 | 84 | 58 | 0 | 3 | 86 | 104 | 187 | 1.19e-11 | 62.0 |
| MS.gene71666.t1 | MTR_3g058400 | 29.452 | 146 | 98 | 3 | 2 | 144 | 108 | 251 | 1.19e-11 | 62.0 |
| MS.gene71666.t1 | MTR_3g436540 | 27.517 | 149 | 80 | 3 | 8 | 128 | 116 | 264 | 1.22e-11 | 62.0 |
| MS.gene71666.t1 | MTR_5g095260 | 32.609 | 92 | 58 | 2 | 2 | 92 | 112 | 200 | 1.96e-11 | 61.6 |
| MS.gene71666.t1 | MTR_5g018990 | 26.230 | 183 | 99 | 4 | 4 | 159 | 110 | 283 | 3.20e-11 | 60.8 |
| MS.gene71666.t1 | MTR_3g058250 | 24.022 | 179 | 105 | 4 | 3 | 157 | 107 | 278 | 3.49e-11 | 60.8 |
| MS.gene71666.t1 | MTR_6g084760 | 29.268 | 82 | 58 | 0 | 8 | 89 | 1 | 82 | 3.82e-11 | 57.4 |
| MS.gene71666.t1 | MTR_4g104640 | 25.946 | 185 | 100 | 4 | 3 | 159 | 121 | 296 | 3.83e-11 | 60.8 |
| MS.gene71666.t1 | MTR_3g057970 | 31.461 | 89 | 59 | 1 | 4 | 92 | 106 | 192 | 6.34e-11 | 60.1 |
| MS.gene71666.t1 | MTR_3g058390 | 25.517 | 145 | 103 | 3 | 3 | 144 | 107 | 249 | 7.45e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71666.t1 | AT5G06900 | 28.272 | 191 | 97 | 4 | 5 | 166 | 107 | 286 | 3.87e-22 | 92.4 |
| MS.gene71666.t1 | AT3G20940 | 30.270 | 185 | 90 | 2 | 10 | 166 | 121 | 294 | 1.46e-21 | 90.9 |
| MS.gene71666.t1 | AT3G20950 | 33.526 | 173 | 99 | 4 | 10 | 166 | 125 | 297 | 1.88e-21 | 90.5 |
| MS.gene71666.t1 | AT2G14100 | 29.730 | 185 | 90 | 2 | 10 | 166 | 122 | 294 | 1.13e-20 | 88.2 |
| MS.gene71666.t1 | AT2G27000 | 30.978 | 184 | 86 | 3 | 13 | 166 | 119 | 291 | 1.53e-20 | 87.8 |
| MS.gene71666.t1 | AT2G42250 | 31.522 | 184 | 89 | 3 | 10 | 166 | 119 | 292 | 4.13e-20 | 86.7 |
| MS.gene71666.t1 | AT3G20080 | 33.103 | 145 | 69 | 1 | 14 | 130 | 125 | 269 | 2.20e-19 | 84.3 |
| MS.gene71666.t1 | AT3G20080 | 33.103 | 145 | 69 | 1 | 14 | 130 | 125 | 269 | 2.20e-19 | 84.3 |
| MS.gene71666.t1 | AT1G50520 | 28.351 | 194 | 99 | 2 | 1 | 166 | 115 | 296 | 2.40e-19 | 84.3 |
| MS.gene71666.t1 | AT1G50560 | 31.351 | 185 | 87 | 3 | 10 | 166 | 125 | 297 | 4.93e-19 | 83.6 |
| MS.gene71666.t1 | AT5G42580 | 32.374 | 139 | 78 | 1 | 8 | 130 | 116 | 254 | 2.55e-18 | 81.3 |
| MS.gene71666.t1 | AT5G47990 | 28.571 | 182 | 91 | 2 | 13 | 166 | 124 | 294 | 4.32e-18 | 80.9 |
| MS.gene71666.t1 | AT5G06905 | 28.108 | 185 | 97 | 3 | 9 | 166 | 108 | 283 | 1.11e-17 | 79.7 |
| MS.gene71666.t1 | AT4G15350 | 40.000 | 95 | 57 | 0 | 14 | 108 | 118 | 212 | 1.24e-17 | 79.3 |
| MS.gene71666.t1 | AT3G20090 | 26.344 | 186 | 96 | 3 | 10 | 166 | 122 | 295 | 1.56e-17 | 79.3 |
| MS.gene71666.t1 | AT3G20110 | 29.508 | 183 | 89 | 2 | 12 | 166 | 120 | 290 | 1.27e-16 | 76.6 |
| MS.gene71666.t1 | AT3G20130 | 33.333 | 114 | 76 | 0 | 8 | 121 | 91 | 204 | 1.33e-16 | 76.6 |
| MS.gene71666.t1 | AT3G20130 | 33.333 | 114 | 76 | 0 | 8 | 121 | 119 | 232 | 1.67e-16 | 76.3 |
| MS.gene71666.t1 | AT4G15360 | 26.554 | 177 | 92 | 3 | 18 | 166 | 127 | 293 | 3.05e-16 | 75.5 |
| MS.gene71666.t1 | AT3G20100 | 27.568 | 185 | 95 | 2 | 10 | 166 | 120 | 293 | 7.28e-16 | 74.3 |
| MS.gene71666.t1 | AT3G32047 | 24.865 | 185 | 98 | 2 | 10 | 166 | 121 | 292 | 9.10e-16 | 73.9 |
| MS.gene71666.t1 | AT2G05180 | 40.659 | 91 | 54 | 0 | 18 | 108 | 128 | 218 | 2.27e-15 | 72.8 |
| MS.gene71666.t1 | AT5G25140 | 35.052 | 97 | 61 | 1 | 8 | 102 | 105 | 201 | 6.23e-15 | 71.6 |
| MS.gene71666.t1 | AT3G20120 | 40.625 | 96 | 57 | 0 | 13 | 108 | 123 | 218 | 1.32e-14 | 70.9 |
| MS.gene71666.t1 | AT3G20140 | 28.750 | 160 | 84 | 2 | 13 | 142 | 122 | 281 | 2.39e-14 | 70.1 |
| MS.gene71666.t1 | AT4G13310 | 29.379 | 177 | 83 | 5 | 16 | 163 | 116 | 279 | 4.09e-14 | 69.3 |
| MS.gene71666.t1 | AT4G13310 | 29.379 | 177 | 83 | 5 | 16 | 163 | 116 | 279 | 5.13e-14 | 68.9 |
| MS.gene71666.t1 | AT3G20960 | 25.668 | 187 | 100 | 2 | 8 | 166 | 15 | 190 | 5.45e-14 | 68.9 |
| MS.gene71666.t1 | AT3G26300 | 26.012 | 173 | 110 | 3 | 8 | 163 | 107 | 278 | 7.47e-14 | 68.6 |
| MS.gene71666.t1 | AT3G20960 | 25.668 | 187 | 100 | 2 | 8 | 166 | 118 | 293 | 7.85e-14 | 68.6 |
| MS.gene71666.t1 | AT3G48320 | 28.049 | 164 | 106 | 3 | 10 | 163 | 110 | 271 | 2.24e-13 | 67.0 |
| MS.gene71666.t1 | AT4G15330 | 29.143 | 175 | 108 | 5 | 8 | 166 | 87 | 261 | 2.84e-13 | 67.0 |
| MS.gene71666.t1 | AT4G15330 | 29.143 | 175 | 108 | 5 | 8 | 166 | 115 | 289 | 2.94e-13 | 67.0 |
| MS.gene71666.t1 | AT3G26310 | 24.855 | 173 | 112 | 3 | 8 | 163 | 106 | 277 | 3.13e-12 | 63.9 |
| MS.gene71666.t1 | AT4G15380 | 35.714 | 98 | 56 | 2 | 13 | 108 | 122 | 214 | 1.47e-11 | 62.0 |
| MS.gene71666.t1 | AT4G13290 | 25.989 | 177 | 89 | 4 | 16 | 163 | 117 | 280 | 3.46e-11 | 60.8 |
| MS.gene71666.t1 | AT3G20080 | 29.545 | 132 | 65 | 1 | 27 | 130 | 1 | 132 | 3.70e-11 | 60.8 |
| MS.gene71666.t1 | AT3G20080 | 29.545 | 132 | 65 | 1 | 27 | 130 | 1 | 132 | 3.70e-11 | 60.8 |
| MS.gene71666.t1 | AT3G20080 | 29.545 | 132 | 65 | 1 | 27 | 130 | 1 | 132 | 3.70e-11 | 60.8 |
| MS.gene71666.t1 | AT3G20080 | 29.545 | 132 | 65 | 1 | 27 | 130 | 1 | 132 | 3.70e-11 | 60.8 |
| MS.gene71666.t1 | AT3G48310 | 26.506 | 166 | 110 | 3 | 8 | 163 | 108 | 271 | 4.19e-11 | 60.5 |
| MS.gene71666.t1 | AT5G25180 | 29.897 | 97 | 66 | 1 | 8 | 102 | 105 | 201 | 4.99e-11 | 60.5 |
Find 33 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAGTTTGAATGAATTCA+TGG | 0.254720 | 1.1:+76980946 | None:intergenic |
| ATAATCAAGCAGAACAAGTT+AGG | 0.294081 | 1.1:-76980815 | MS.gene71666:CDS |
| GAATGAATTCATGGAGTTCT+TGG | 0.307299 | 1.1:+76980955 | None:intergenic |
| AACTTTGGCAAATAAGTCTA+AGG | 0.336693 | 1.1:-76980931 | MS.gene71666:CDS |
| CCATGAATTCATTCAAACTT+TGG | 0.338713 | 1.1:-76980946 | MS.gene71666:CDS |
| TGTGAGGTTCACACTTTCTT+CGG | 0.366286 | 1.1:+76980908 | None:intergenic |
| CATCCGTGATATTATGTTGT+TGG | 0.377371 | 1.1:+76980866 | None:intergenic |
| GCTCAGCACCACTGAGCTCT+TGG | 0.389280 | 1.1:-76981015 | MS.gene71666:CDS |
| AATGAATTCATGGAGTTCTT+GGG | 0.401039 | 1.1:+76980956 | None:intergenic |
| CAAAAGGTATGATGCTTTGT+TGG | 0.407133 | 1.1:-76980679 | MS.gene71666:CDS |
| ATCATAGGCAACTACGTTGA+TGG | 0.425364 | 1.1:+76981091 | None:intergenic |
| TCGCCCCTTATGGGACGTAT+TGG | 0.425739 | 1.1:-76981052 | MS.gene71666:CDS |
| ATTTCCAATACGTCCCATAA+GGG | 0.429868 | 1.1:+76981048 | None:intergenic |
| AATTTCCAATACGTCCCATA+AGG | 0.453123 | 1.1:+76981047 | None:intergenic |
| ATAGATGGTGTTGGTGAGAA+TGG | 0.474210 | 1.1:-76980609 | MS.gene71666:CDS |
| AGGGAAGCCAAGCTAATAGA+TGG | 0.474398 | 1.1:-76980624 | MS.gene71666:CDS |
| ACCAACACCATCTATTAGCT+TGG | 0.489140 | 1.1:+76980617 | None:intergenic |
| AGCAAAAGTTGCATCATCAT+AGG | 0.489946 | 1.1:+76981076 | None:intergenic |
| CTGATCGTGAAGAACTAAGA+AGG | 0.497144 | 1.1:-76980644 | MS.gene71666:CDS |
| CTCAGCACCACTGAGCTCTT+GGG | 0.498900 | 1.1:-76981014 | MS.gene71666:CDS |
| TAATCAAGCAGAACAAGTTA+GGG | 0.511063 | 1.1:-76980814 | MS.gene71666:CDS |
| TGGAGTTCTTGGGTTCGAAT+CGG | 0.519216 | 1.1:+76980966 | None:intergenic |
| AGCAGAACAAGTTAGGGCAT+TGG | 0.520526 | 1.1:-76980808 | MS.gene71666:CDS |
| GGGCCTTGGACATACACAAA+AGG | 0.575364 | 1.1:-76980695 | MS.gene71666:CDS |
| TGATCGTGAAGAACTAAGAA+GGG | 0.579644 | 1.1:-76980643 | MS.gene71666:CDS |
| ATGTTGAGTATTGATTGCTC+AGG | 0.600833 | 1.1:-76980843 | MS.gene71666:CDS |
| GCTTTATCAAAGCTTGTGTG+AGG | 0.613323 | 1.1:+76980892 | None:intergenic |
| TTTCCAATACGTCCCATAAG+GGG | 0.615196 | 1.1:+76981049 | None:intergenic |
| TTTCCAACAACATAATATCA+CGG | 0.620811 | 1.1:-76980869 | MS.gene71666:CDS |
| GCCAAGCTAATAGATGGTGT+TGG | 0.622063 | 1.1:-76980618 | MS.gene71666:CDS |
| AGTTAGGGCATTGGTTCGCG+AGG | 0.647937 | 1.1:-76980799 | MS.gene71666:intron |
| AATCGGTAGAAATTGCGACA+TGG | 0.690545 | 1.1:+76980983 | None:intergenic |
| TCGATTACCCAAGAGCTCAG+TGG | 0.718966 | 1.1:+76981007 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGTTTCAGATTTTAT+AGG | - | chr1.1:76980890-76980909 | MS.gene71666:CDS | 15.0% |
| ! | TTTCCAACAACATAATATCA+CGG | - | chr1.1:76980777-76980796 | MS.gene71666:intron | 25.0% |
| AACTTTGGCAAATAAGTCTA+AGG | - | chr1.1:76980715-76980734 | MS.gene71666:intron | 30.0% | |
| AATGAATTCATGGAGTTCTT+GGG | + | chr1.1:76980693-76980712 | None:intergenic | 30.0% | |
| ATAATCAAGCAGAACAAGTT+AGG | - | chr1.1:76980831-76980850 | MS.gene71666:CDS | 30.0% | |
| CCAAAGTTTGAATGAATTCA+TGG | + | chr1.1:76980703-76980722 | None:intergenic | 30.0% | |
| CCATGAATTCATTCAAACTT+TGG | - | chr1.1:76980700-76980719 | MS.gene71666:intron | 30.0% | |
| TAATCAAGCAGAACAAGTTA+GGG | - | chr1.1:76980832-76980851 | MS.gene71666:CDS | 30.0% | |
| !!! | ACTTGCAAGGTTTTAAAAAG+AGG | - | chr1.1:76980930-76980949 | MS.gene71666:CDS | 30.0% |
| !!! | CTTGCAAGGTTTTAAAAAGA+GGG | - | chr1.1:76980931-76980950 | MS.gene71666:CDS | 30.0% |
| AATTTCCAATACGTCCCATA+AGG | + | chr1.1:76980602-76980621 | None:intergenic | 35.0% | |
| AGCAAAAGTTGCATCATCAT+AGG | + | chr1.1:76980573-76980592 | None:intergenic | 35.0% | |
| ATTTCCAATACGTCCCATAA+GGG | + | chr1.1:76980601-76980620 | None:intergenic | 35.0% | |
| CATCCGTGATATTATGTTGT+TGG | + | chr1.1:76980783-76980802 | None:intergenic | 35.0% | |
| GAATGAATTCATGGAGTTCT+TGG | + | chr1.1:76980694-76980713 | None:intergenic | 35.0% | |
| TGATCGTGAAGAACTAAGAA+GGG | - | chr1.1:76981003-76981022 | MS.gene71666:CDS | 35.0% | |
| ! | ATACCTTTTGTGTATGTCCA+AGG | + | chr1.1:76980957-76980976 | None:intergenic | 35.0% |
| ! | CAAAAGGTATGATGCTTTGT+TGG | - | chr1.1:76980967-76980986 | MS.gene71666:CDS | 35.0% |
| !! | ATGTTGAGTATTGATTGCTC+AGG | - | chr1.1:76980803-76980822 | MS.gene71666:CDS | 35.0% |
| !! | TTCAAGAACTTTGACTTGCA+AGG | - | chr1.1:76980917-76980936 | MS.gene71666:CDS | 35.0% |
| AATCGGTAGAAATTGCGACA+TGG | + | chr1.1:76980666-76980685 | None:intergenic | 40.0% | |
| ACCAACACCATCTATTAGCT+TGG | + | chr1.1:76981032-76981051 | None:intergenic | 40.0% | |
| ATCATAGGCAACTACGTTGA+TGG | + | chr1.1:76980558-76980577 | None:intergenic | 40.0% | |
| CTGATCGTGAAGAACTAAGA+AGG | - | chr1.1:76981002-76981021 | MS.gene71666:CDS | 40.0% | |
| GCTTTATCAAAGCTTGTGTG+AGG | + | chr1.1:76980757-76980776 | None:intergenic | 40.0% | |
| TGTGAGGTTCACACTTTCTT+CGG | + | chr1.1:76980741-76980760 | None:intergenic | 40.0% | |
| TTTCCAATACGTCCCATAAG+GGG | + | chr1.1:76980600-76980619 | None:intergenic | 40.0% | |
| ! | CGCGAGGTAACACAAATTTT+TGG | - | chr1.1:76980863-76980882 | MS.gene71666:CDS | 40.0% |
| !! | ATAGATGGTGTTGGTGAGAA+TGG | - | chr1.1:76981037-76981056 | MS.gene71666:CDS | 40.0% |
| !!! | AGGTTTTAAAAAGAGGGCCT+TGG | - | chr1.1:76980937-76980956 | MS.gene71666:CDS | 40.0% |
| AGCAGAACAAGTTAGGGCAT+TGG | - | chr1.1:76980838-76980857 | MS.gene71666:CDS | 45.0% | |
| AGGGAAGCCAAGCTAATAGA+TGG | - | chr1.1:76981022-76981041 | MS.gene71666:CDS | 45.0% | |
| GCCAAGCTAATAGATGGTGT+TGG | - | chr1.1:76981028-76981047 | MS.gene71666:CDS | 45.0% | |
| TGGAGTTCTTGGGTTCGAAT+CGG | + | chr1.1:76980683-76980702 | None:intergenic | 45.0% | |
| ! | ACTTTTGCTTTCGCCCCTTA+TGG | - | chr1.1:76980584-76980603 | MS.gene71666:CDS | 45.0% |
| ! | CTTTTGCTTTCGCCCCTTAT+GGG | - | chr1.1:76980585-76980604 | MS.gene71666:CDS | 45.0% |
| GGGCCTTGGACATACACAAA+AGG | - | chr1.1:76980951-76980970 | MS.gene71666:CDS | 50.0% | |
| TCGATTACCCAAGAGCTCAG+TGG | + | chr1.1:76980642-76980661 | None:intergenic | 50.0% | |
| CTCAGCACCACTGAGCTCTT+GGG | - | chr1.1:76980632-76980651 | MS.gene71666:CDS | 55.0% | |
| TCGCCCCTTATGGGACGTAT+TGG | - | chr1.1:76980594-76980613 | MS.gene71666:CDS | 55.0% | |
| !! | AGTTAGGGCATTGGTTCGCG+AGG | - | chr1.1:76980847-76980866 | MS.gene71666:CDS | 55.0% |
| GCTCAGCACCACTGAGCTCT+TGG | - | chr1.1:76980631-76980650 | MS.gene71666:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 76980545 | 76981123 | 76980545 | ID=MS.gene71666 |
| chr1.1 | mRNA | 76980545 | 76981123 | 76980545 | ID=MS.gene71666.t1;Parent=MS.gene71666 |
| chr1.1 | exon | 76980800 | 76981123 | 76980800 | ID=MS.gene71666.t1.exon1;Parent=MS.gene71666.t1 |
| chr1.1 | CDS | 76980800 | 76981123 | 76980800 | ID=cds.MS.gene71666.t1;Parent=MS.gene71666.t1 |
| chr1.1 | exon | 76980545 | 76980718 | 76980545 | ID=MS.gene71666.t1.exon2;Parent=MS.gene71666.t1 |
| chr1.1 | CDS | 76980545 | 76980718 | 76980545 | ID=cds.MS.gene71666.t1;Parent=MS.gene71666.t1 |
| Gene Sequence |
| Protein sequence |
