Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28867.t1 | XP_003629273.1 | 98.7 | 479 | 5 | 1 | 1 | 478 | 1 | 479 | 9.80E-252 | 879 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28867.t1 | Q9SD20 | 62.8 | 465 | 129 | 7 | 12 | 475 | 6 | 427 | 1.3e-146 | 521.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28867.t1 | G7LB76 | 98.7 | 479 | 5 | 1 | 1 | 478 | 1 | 479 | 7.1e-252 | 879.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene28867 | 0.821766 | 3.39E-53 | -1.69E-46 |
| MS.gene049596 | MS.gene28867 | 0.824331 | 8.55E-54 | -1.69E-46 |
| MS.gene049622 | MS.gene28867 | 0.842392 | 2.66E-58 | -1.69E-46 |
| MS.gene049660 | MS.gene28867 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene28867 | 0.892465 | 1.55E-74 | -1.69E-46 |
| MS.gene050297 | MS.gene28867 | 0.887588 | 1.25E-72 | -1.69E-46 |
| MS.gene05054 | MS.gene28867 | 0.804372 | 2.23E-49 | -1.69E-46 |
| MS.gene05124 | MS.gene28867 | 0.839602 | 1.44E-57 | -1.69E-46 |
| MS.gene051263 | MS.gene28867 | 0.816378 | 5.70E-52 | -1.69E-46 |
| MS.gene051339 | MS.gene28867 | 0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene051423 | MS.gene28867 | 0.809929 | 1.48E-50 | -1.69E-46 |
| MS.gene051629 | MS.gene28867 | 0.822878 | 1.87E-53 | -1.69E-46 |
| MS.gene051742 | MS.gene28867 | 0.850772 | 1.37E-60 | -1.69E-46 |
| MS.gene051816 | MS.gene28867 | 0.845031 | 5.23E-59 | -1.69E-46 |
| MS.gene051914 | MS.gene28867 | 0.84243 | 2.60E-58 | -1.69E-46 |
| MS.gene051955 | MS.gene28867 | 0.898138 | 7.11E-77 | -1.69E-46 |
| MS.gene052143 | MS.gene28867 | 0.881056 | 3.30E-70 | -1.69E-46 |
| MS.gene052169 | MS.gene28867 | 0.800396 | 1.47E-48 | -1.69E-46 |
| MS.gene052308 | MS.gene28867 | 0.904322 | 1.38E-79 | -1.69E-46 |
| MS.gene052367 | MS.gene28867 | 0.930982 | 7.39E-94 | -1.69E-46 |
| MS.gene053173 | MS.gene28867 | 0.882182 | 1.29E-70 | -1.69E-46 |
| MS.gene053348 | MS.gene28867 | 0.862443 | 5.05E-64 | -1.69E-46 |
| MS.gene053416 | MS.gene28867 | 0.879677 | 1.02E-69 | -1.69E-46 |
| MS.gene053417 | MS.gene28867 | 0.880193 | 6.71E-70 | -1.69E-46 |
| MS.gene05369 | MS.gene28867 | 0.841542 | 4.46E-58 | -1.69E-46 |
| MS.gene054551 | MS.gene28867 | 0.888561 | 5.29E-73 | -1.69E-46 |
| MS.gene054552 | MS.gene28867 | 0.843027 | 1.80E-58 | -1.69E-46 |
| MS.gene054593 | MS.gene28867 | 0.881644 | 2.02E-70 | -1.69E-46 |
| MS.gene054633 | MS.gene28867 | 0.837456 | 5.14E-57 | -1.69E-46 |
| MS.gene054643 | MS.gene28867 | 0.833142 | 6.32E-56 | -1.69E-46 |
| MS.gene054662 | MS.gene28867 | 0.820576 | 6.37E-53 | -1.69E-46 |
| MS.gene054885 | MS.gene28867 | 0.829912 | 3.95E-55 | -1.69E-46 |
| MS.gene054941 | MS.gene28867 | 0.814872 | 1.23E-51 | -1.69E-46 |
| MS.gene055308 | MS.gene28867 | 0.910789 | 1.26E-82 | -1.69E-46 |
| MS.gene055411 | MS.gene28867 | 0.825129 | 5.55E-54 | -1.69E-46 |
| MS.gene055578 | MS.gene28867 | 0.916815 | 1.13E-85 | -1.69E-46 |
| MS.gene055579 | MS.gene28867 | 0.857884 | 1.20E-62 | -1.69E-46 |
| MS.gene055957 | MS.gene28867 | 0.902964 | 5.65E-79 | -1.69E-46 |
| MS.gene056041 | MS.gene28867 | 0.952581 | 1.78E-110 | -1.69E-46 |
| MS.gene056042 | MS.gene28867 | 0.883147 | 5.74E-71 | -1.69E-46 |
| MS.gene056335 | MS.gene28867 | 0.811749 | 5.99E-51 | -1.69E-46 |
| MS.gene05640 | MS.gene28867 | 0.881505 | 2.27E-70 | -1.69E-46 |
| MS.gene056526 | MS.gene28867 | 0.892122 | 2.12E-74 | -1.69E-46 |
| MS.gene056528 | MS.gene28867 | 0.864483 | 1.18E-64 | -1.69E-46 |
| MS.gene05652 | MS.gene28867 | 0.845086 | 5.06E-59 | -1.69E-46 |
| MS.gene057358 | MS.gene28867 | 0.833048 | 6.67E-56 | -1.69E-46 |
| MS.gene057359 | MS.gene28867 | 0.824044 | 9.99E-54 | -1.69E-46 |
| MS.gene057367 | MS.gene28867 | 0.823664 | 1.23E-53 | -1.69E-46 |
| MS.gene057458 | MS.gene28867 | 0.891031 | 5.75E-74 | -1.69E-46 |
| MS.gene057483 | MS.gene28867 | 0.825446 | 4.67E-54 | -1.69E-46 |
| MS.gene058013 | MS.gene28867 | 0.808227 | 3.43E-50 | -1.69E-46 |
| MS.gene058128 | MS.gene28867 | 0.877123 | 8.09E-69 | -1.69E-46 |
| MS.gene058196 | MS.gene28867 | 0.847954 | 8.34E-60 | -1.69E-46 |
| MS.gene058197 | MS.gene28867 | 0.834753 | 2.50E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene28867 | 0.833467 | 5.24E-56 | -1.69E-46 |
| MS.gene058818 | MS.gene28867 | 0.831621 | 1.50E-55 | -1.69E-46 |
| MS.gene058827 | MS.gene28867 | 0.830307 | 3.16E-55 | -1.69E-46 |
| MS.gene058828 | MS.gene28867 | 0.812428 | 4.26E-51 | -1.69E-46 |
| MS.gene058844 | MS.gene28867 | 0.808934 | 2.43E-50 | -1.69E-46 |
| MS.gene058849 | MS.gene28867 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene28867 | 0.891922 | 2.55E-74 | -1.69E-46 |
| MS.gene059300 | MS.gene28867 | 0.864543 | 1.13E-64 | -1.69E-46 |
| MS.gene059553 | MS.gene28867 | 0.863915 | 1.77E-64 | -1.69E-46 |
| MS.gene059616 | MS.gene28867 | 0.834301 | 3.24E-56 | -1.69E-46 |
| MS.gene060473 | MS.gene28867 | 0.922336 | 1.12E-88 | -1.69E-46 |
| MS.gene060565 | MS.gene28867 | 0.915714 | 4.24E-85 | -1.69E-46 |
| MS.gene06057 | MS.gene28867 | 0.878675 | 2.32E-69 | -1.69E-46 |
| MS.gene06064 | MS.gene28867 | 0.814964 | 1.18E-51 | -1.69E-46 |
| MS.gene060825 | MS.gene28867 | 0.820855 | 5.50E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene28867 | 0.892281 | 1.83E-74 | -1.69E-46 |
| MS.gene060985 | MS.gene28867 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene061099 | MS.gene28867 | 0.914435 | 1.92E-84 | -1.69E-46 |
| MS.gene061260 | MS.gene28867 | 0.925072 | 3.01E-90 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28867.t1 | MTR_8g075260 | 98.747 | 479 | 5 | 1 | 1 | 478 | 1 | 479 | 0.0 | 977 |
| MS.gene28867.t1 | MTR_7g058930 | 58.848 | 243 | 95 | 2 | 24 | 265 | 11 | 249 | 1.61e-96 | 293 |
| MS.gene28867.t1 | MTR_2g030510 | 56.202 | 258 | 104 | 3 | 16 | 265 | 23 | 279 | 1.71e-93 | 296 |
| MS.gene28867.t1 | MTR_7g059010 | 58.051 | 236 | 95 | 1 | 32 | 267 | 15 | 246 | 5.58e-93 | 284 |
| MS.gene28867.t1 | MTR_7g059010 | 58.051 | 236 | 95 | 1 | 32 | 267 | 32 | 263 | 2.26e-91 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28867.t1 | AT3G51280 | 67.312 | 465 | 108 | 8 | 12 | 475 | 6 | 427 | 0.0 | 600 |
| MS.gene28867.t1 | AT5G48850 | 65.842 | 202 | 69 | 0 | 34 | 235 | 25 | 226 | 9.64e-94 | 286 |
| MS.gene28867.t1 | AT1G04770 | 60.435 | 230 | 86 | 3 | 35 | 263 | 19 | 244 | 1.39e-91 | 281 |
| MS.gene28867.t1 | AT4G20900 | 50.549 | 273 | 121 | 2 | 8 | 266 | 9 | 281 | 3.61e-89 | 279 |
| MS.gene28867.t1 | AT4G20900 | 47.751 | 289 | 121 | 3 | 8 | 266 | 9 | 297 | 6.69e-85 | 268 |
| MS.gene28867.t1 | AT5G44330 | 50.649 | 231 | 109 | 2 | 34 | 264 | 46 | 271 | 2.40e-69 | 229 |
| MS.gene28867.t1 | AT5G22794 | 58.209 | 67 | 28 | 0 | 113 | 179 | 71 | 137 | 2.84e-18 | 84.3 |
| MS.gene28867.t1 | AT5G22794 | 50.746 | 67 | 26 | 1 | 113 | 179 | 71 | 130 | 4.13e-12 | 65.9 |
Find 90 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATTCTTGCTGCTGTTT+TGG | 0.178483 | 8.2:+29806030 | MS.gene28867:CDS |
| AATGAAAATGCTGCTACTTC+TGG | 0.215619 | 8.2:+29806073 | MS.gene28867:CDS |
| ACAACAATTCAAGATGAATT+TGG | 0.227598 | 8.2:+29805671 | MS.gene28867:CDS |
| AGAGAGCGATTCCGTTGTTT+TGG | 0.260744 | 8.2:+29804157 | MS.gene28867:CDS |
| GATGATTTCGCTGCATAAAA+TGG | 0.277779 | 8.2:-29805800 | None:intergenic |
| CATTTGCTGTGCTCTTTCAT+AGG | 0.288854 | 8.2:-29805492 | None:intergenic |
| TAACTGCAGGTTTGACTCTA+TGG | 0.294689 | 8.2:-29805433 | None:intergenic |
| AACAACAAGATGTGCAATTT+AGG | 0.318920 | 8.2:+29805362 | MS.gene28867:CDS |
| AAATGATTCAGAACGAGTTC+TGG | 0.326927 | 8.2:-29803934 | None:intergenic |
| CACTCCTCTGTTCATCATTT+CGG | 0.327062 | 8.2:-29805531 | None:intergenic |
| TTCTTGGTTCTTCATCAATC+TGG | 0.332090 | 8.2:+29805588 | MS.gene28867:CDS |
| GTTGTTGATGTTGTTCTGAT+TGG | 0.343441 | 8.2:-29805653 | None:intergenic |
| TGTGCCTCAATAGAGCAATT+TGG | 0.359571 | 8.2:-29804701 | None:intergenic |
| AGTCAATTAACTTAAGCCTT+TGG | 0.361559 | 8.2:-29806163 | None:intergenic |
| CATTGAAAGCCAAGCCTTGT+TGG | 0.364459 | 8.2:-29804737 | None:intergenic |
| TTATGTTCAGTTGGTGGATA+AGG | 0.365272 | 8.2:+29804128 | MS.gene28867:intron |
| ACAAAACAAGTTTACTCCTT+TGG | 0.369430 | 8.2:+29805748 | MS.gene28867:CDS |
| GTTTCAAGTCTCAGTGGAAC+AGG | 0.373627 | 8.2:+29804797 | MS.gene28867:CDS |
| TGATTTCTTGCCTGATACTA+AGG | 0.375510 | 8.2:+29805997 | MS.gene28867:CDS |
| ACAGGAAGCCACTAGATTAT+TGG | 0.376288 | 8.2:+29804815 | MS.gene28867:CDS |
| TCTTCAAAGTCCTTAGTATC+AGG | 0.383303 | 8.2:-29806007 | None:intergenic |
| ATCCCTTGATAATATTCTCT+TGG | 0.392842 | 8.2:+29804317 | MS.gene28867:CDS |
| TTGCACATCTTGTTGTTGTC+TGG | 0.396722 | 8.2:-29805356 | None:intergenic |
| AACAAGGTGAATGTGGAATT+AGG | 0.398538 | 8.2:+29805923 | MS.gene28867:CDS |
| ATGAAAATGCTGCTACTTCT+GGG | 0.406115 | 8.2:+29806074 | MS.gene28867:CDS |
| AATTGACAAGAGGAGGCTTA+AGG | 0.406569 | 8.2:+29806111 | MS.gene28867:CDS |
| CAACAAGGCTTGGCTTTCAA+TGG | 0.408200 | 8.2:+29804738 | MS.gene28867:CDS |
| AGCCTTCTTGCTTTGTTCCC+AGG | 0.413071 | 8.2:-29805950 | None:intergenic |
| TGCAGCGAAATCATCTTTCA+AGG | 0.414771 | 8.2:+29805808 | MS.gene28867:CDS |
| TGTTATGAAGCAACAGAATA+GGG | 0.426367 | 8.2:+29804233 | MS.gene28867:CDS |
| AGGTGAACAAGGTGCTGATT+TGG | 0.430455 | 8.2:-29803892 | None:intergenic |
| TTGTTATGAAGCAACAGAAT+AGG | 0.435114 | 8.2:+29804232 | MS.gene28867:CDS |
| ATCATTTCACATCACTCATA+AGG | 0.435859 | 8.2:+29803950 | MS.gene28867:CDS |
| GGATAGTGCTTTGAAAGATA+TGG | 0.439771 | 8.2:+29804206 | MS.gene28867:CDS |
| GATTTGGAGGGTCTGAAACC+TGG | 0.448598 | 8.2:-29803876 | None:intergenic |
| CTGGCAACCTCAGCCTTGTA+AGG | 0.454869 | 8.2:+29805607 | MS.gene28867:CDS |
| AGACTTAAGAGAACAAGGTC+TGG | 0.456656 | 8.2:+29805860 | MS.gene28867:CDS |
| CTTGGTCCATCTGTAACTGC+AGG | 0.464222 | 8.2:-29805446 | None:intergenic |
| GTTGATGTTGTTCTGATTGG+TGG | 0.465660 | 8.2:-29805650 | None:intergenic |
| AACAACGGAATCGCTCTCTC+CGG | 0.472198 | 8.2:-29804153 | None:intergenic |
| TGTTCACCTGCAAAACCTCT+TGG | 0.478338 | 8.2:+29803906 | MS.gene28867:CDS |
| ATGACCAAATTGCTCTATTG+AGG | 0.491243 | 8.2:+29804697 | MS.gene28867:CDS |
| TGTTTAATGAAGGGAAACTT+AGG | 0.491546 | 8.2:+29805263 | MS.gene28867:intron |
| AGATGAGAATCTGAGCCTCT+TGG | 0.492459 | 8.2:-29805464 | None:intergenic |
| GTATTTAATCCAACAAGGCT+TGG | 0.493094 | 8.2:+29804728 | MS.gene28867:CDS |
| GATCCAAGAGAATATTATCA+AGG | 0.493677 | 8.2:-29804320 | None:intergenic |
| AATGTGGAATTAGGTGTGCC+TGG | 0.493922 | 8.2:+29805932 | MS.gene28867:CDS |
| TATCAAGGGATTCTTGTGCT+TGG | 0.496201 | 8.2:-29804305 | None:intergenic |
| TACATTATCTTTGAGTCCAA+AGG | 0.496791 | 8.2:+29806147 | MS.gene28867:CDS |
| ACATAAGGAGTATCACCAAC+AGG | 0.497457 | 8.2:-29803975 | None:intergenic |
| TAGACAAAGCGCACGGCGAT+AGG | 0.501182 | 8.2:-29805330 | None:intergenic |
| GTGTGAATGTTATCCTTACA+AGG | 0.508378 | 8.2:-29805620 | None:intergenic |
| ACAAGGTCTGGAAATGCTGC+AGG | 0.523586 | 8.2:+29805872 | MS.gene28867:CDS |
| TCAGTTGGTGGATAAGGATC+CGG | 0.533131 | 8.2:+29804134 | MS.gene28867:intron |
| TAATGAAGGGAAACTTAGGA+TGG | 0.537638 | 8.2:+29805267 | MS.gene28867:intron |
| TGAACAAGGTGCTGATTTGG+AGG | 0.544098 | 8.2:-29803889 | None:intergenic |
| GAGATGTGGAATGCTCCTCC+AGG | 0.548444 | 8.2:+29803858 | MS.gene28867:CDS |
| ACAAAGACTGCTAGATCTCA+AGG | 0.550806 | 8.2:+29804768 | MS.gene28867:CDS |
| CTGAGAGACTTAAGAGAACA+AGG | 0.551011 | 8.2:+29805855 | MS.gene28867:CDS |
| ATGTTATCCTTACAAGGCTG+AGG | 0.558507 | 8.2:-29805614 | None:intergenic |
| TATTCTCTTGGATCTATACA+AGG | 0.569966 | 8.2:+29804329 | MS.gene28867:CDS |
| CAACAATGATGCAAGAGATG+TGG | 0.570388 | 8.2:+29803844 | None:intergenic |
| TGATGAACAGAGGAGTGGAC+AGG | 0.573280 | 8.2:+29805537 | MS.gene28867:CDS |
| GTCAAACCTGCAGTTACAGA+TGG | 0.578477 | 8.2:+29805440 | MS.gene28867:CDS |
| GGCATTTGTTTGATGAAACA+AGG | 0.580903 | 8.2:+29805383 | MS.gene28867:CDS |
| ATCCAAGAGAATATTATCAA+GGG | 0.583006 | 8.2:-29804319 | None:intergenic |
| GATAAATGCGGGAGATAGAG+TGG | 0.583477 | 8.2:+29804185 | MS.gene28867:CDS |
| CCAAGAAAATTGACAAGAGG+AGG | 0.583655 | 8.2:+29806104 | MS.gene28867:CDS |
| GCTCCAAGAAAATTGACAAG+AGG | 0.594072 | 8.2:+29806101 | MS.gene28867:CDS |
| TGCTGCAGGATTACTGAGAG+TGG | 0.597304 | 8.2:+29805886 | MS.gene28867:CDS |
| ATCACTCATAAGGTTCCTGT+TGG | 0.598329 | 8.2:+29803960 | MS.gene28867:CDS |
| TTTATCGCCGCCCAAAACAA+CGG | 0.610991 | 8.2:-29804168 | None:intergenic |
| TTTGAACACAGAGATGTGGT+AGG | 0.612406 | 8.2:+29804670 | MS.gene28867:intron |
| AATGAAGGGAAACTTAGGAT+GGG | 0.612702 | 8.2:+29805268 | MS.gene28867:intron |
| GAACAGCAACAAGGTGAATG+TGG | 0.619368 | 8.2:+29805916 | MS.gene28867:CDS |
| CGAAATGATGAACAGAGGAG+TGG | 0.643510 | 8.2:+29805532 | MS.gene28867:CDS |
| ATGTGGAATTAGGTGTGCCT+GGG | 0.644724 | 8.2:+29805933 | MS.gene28867:CDS |
| CAAAGACTGCTAGATCTCAA+GGG | 0.647976 | 8.2:+29804769 | MS.gene28867:CDS |
| TGCCTGGGAACAAAGCAAGA+AGG | 0.654997 | 8.2:+29805948 | MS.gene28867:CDS |
| TTAAGCGAGTTGTTCACCAA+AGG | 0.657800 | 8.2:-29805764 | None:intergenic |
| GAACAAGGTGCTGATTTGGA+GGG | 0.661705 | 8.2:-29803888 | None:intergenic |
| GAAGAAGTTTCAAGTCTCAG+TGG | 0.665599 | 8.2:+29804791 | MS.gene28867:CDS |
| GAGTCCGAAATGATGAACAG+AGG | 0.679232 | 8.2:+29805527 | MS.gene28867:CDS |
| AAGCTGTATTTAATCCAACA+AGG | 0.684622 | 8.2:+29804723 | MS.gene28867:CDS |
| GCAGTTACAGATGGACCAAG+AGG | 0.685614 | 8.2:+29805449 | MS.gene28867:CDS |
| TTGGAGGGTCTGAAACCTGG+AGG | 0.693634 | 8.2:-29803873 | None:intergenic |
| CTGGAGCTAGACAAAGCGCA+CGG | 0.693761 | 8.2:-29805337 | None:intergenic |
| GATTTCGCTGCATAAAATGG+CGG | 0.696414 | 8.2:-29805797 | None:intergenic |
| GGATGATGTGAACAGCAACA+AGG | 0.698794 | 8.2:+29805907 | MS.gene28867:CDS |
| CGAGTTCTGGAAACACCAAG+AGG | 0.701607 | 8.2:-29803921 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGTTTTTTTTAACAAAA+TGG | - | chr8.2:29805208-29805227 | None:intergenic | 10.0% |
| !!! | AATGTAATTTTATAATTTGT+AGG | + | chr8.2:29804550-29804569 | MS.gene28867:intron | 10.0% |
| !!! | ATGTAATTTTATAATTTGTA+GGG | + | chr8.2:29804551-29804570 | MS.gene28867:intron | 10.0% |
| !!! | TATAAAATTACATTCTTTTT+GGG | - | chr8.2:29804544-29804563 | None:intergenic | 10.0% |
| !!! | TTATAAAATTACATTCTTTT+TGG | - | chr8.2:29804545-29804564 | None:intergenic | 10.0% |
| !!! | TTGTTAAAAAAAACATTTTT+AGG | + | chr8.2:29805210-29805229 | MS.gene28867:intron | 10.0% |
| !! | ATATAAATAACTACCATATA+GGG | - | chr8.2:29804434-29804453 | None:intergenic | 15.0% |
| !!! | AAAAGTCAAATATTCTTTTA+AGG | - | chr8.2:29805042-29805061 | None:intergenic | 15.0% |
| !!! | ATTTTAACGTTTTATCTAAA+TGG | + | chr8.2:29804093-29804112 | MS.gene28867:intron | 15.0% |
| !!! | TGTAATTTTATAATTTGTAG+GGG | + | chr8.2:29804552-29804571 | MS.gene28867:intron | 15.0% |
| !!! | TTTTAACGTTTTATCTAAAT+GGG | + | chr8.2:29804094-29804113 | MS.gene28867:intron | 15.0% |
| !!! | TTTTGTTTTTGTTTTTTACA+AGG | + | chr8.2:29804047-29804066 | MS.gene28867:intron | 15.0% |
| !! | AAAAAAAATCCAAAACAAAC+CGG | - | chr8.2:29805109-29805128 | None:intergenic | 20.0% |
| !! | CATATAAATAACTACCATAT+AGG | - | chr8.2:29804435-29804454 | None:intergenic | 20.0% |
| !! | CTATATGGTAGTTATTTATA+TGG | + | chr8.2:29804433-29804452 | MS.gene28867:intron | 20.0% |
| !!! | AAAAGTCAAATACTCTTTTA+AGG | - | chr8.2:29804991-29805010 | None:intergenic | 20.0% |
| !!! | TTGAAATCTTTAAAGAGTAT+GGG | + | chr8.2:29805083-29805102 | MS.gene28867:intron | 20.0% |
| !!! | TTTGAAATCTTTAAAGAGTA+TGG | + | chr8.2:29805082-29805101 | MS.gene28867:intron | 20.0% |
| ! | AATGTGCACTAAACAAATAT+TGG | + | chr8.2:29804581-29804600 | MS.gene28867:intron | 25.0% |
| ! | ACAACAATTCAAGATGAATT+TGG | + | chr8.2:29805671-29805690 | MS.gene28867:CDS | 25.0% |
| ! | ATCCAAGAGAATATTATCAA+GGG | - | chr8.2:29804322-29804341 | None:intergenic | 25.0% |
| ! | ATCTTGAATTTATCCCTATA+TGG | + | chr8.2:29804418-29804437 | MS.gene28867:intron | 25.0% |
| !! | AATCATTACCTGAACATTTT+TGG | - | chr8.2:29804006-29804025 | None:intergenic | 25.0% |
| !! | ATTTTTCACTATGTTGGTAT+TGG | - | chr8.2:29805714-29805733 | None:intergenic | 25.0% |
| !! | TGTGTAATTTTTCACTATGT+TGG | - | chr8.2:29805720-29805739 | None:intergenic | 25.0% |
| !! | TTTTCTTACCAATAATCTAG+TGG | - | chr8.2:29804826-29804845 | None:intergenic | 25.0% |
| !!! | GAACTTTGTTGTTTAATGAA+GGG | + | chr8.2:29805254-29805273 | MS.gene28867:intron | 25.0% |
| !!! | GTTTTGATTTTATGTTCAGT+TGG | + | chr8.2:29804119-29804138 | MS.gene28867:intron | 25.0% |
| !!! | TGAACTTTGTTGTTTAATGA+AGG | + | chr8.2:29805253-29805272 | MS.gene28867:intron | 25.0% |
| AACAACAAGATGTGCAATTT+AGG | + | chr8.2:29805362-29805381 | MS.gene28867:CDS | 30.0% | |
| AAGCTGTATTTAATCCAACA+AGG | + | chr8.2:29804723-29804742 | MS.gene28867:CDS | 30.0% | |
| ACAAAACAAGTTTACTCCTT+TGG | + | chr8.2:29805748-29805767 | MS.gene28867:CDS | 30.0% | |
| ATCATTTCACATCACTCATA+AGG | + | chr8.2:29803950-29803969 | MS.gene28867:CDS | 30.0% | |
| GATCCAAGAGAATATTATCA+AGG | - | chr8.2:29804323-29804342 | None:intergenic | 30.0% | |
| TACATTATCTTTGAGTCCAA+AGG | + | chr8.2:29806147-29806166 | MS.gene28867:CDS | 30.0% | |
| TATTCTCTTGGATCTATACA+AGG | + | chr8.2:29804329-29804348 | MS.gene28867:CDS | 30.0% | |
| TGTTATGAAGCAACAGAATA+GGG | + | chr8.2:29804233-29804252 | MS.gene28867:CDS | 30.0% | |
| TGTTTAATGAAGGGAAACTT+AGG | + | chr8.2:29805263-29805282 | MS.gene28867:intron | 30.0% | |
| TTGTTATGAAGCAACAGAAT+AGG | + | chr8.2:29804232-29804251 | MS.gene28867:CDS | 30.0% | |
| ! | AGGTAATGATTTTAAGCTTC+TGG | + | chr8.2:29804015-29804034 | MS.gene28867:intron | 30.0% |
| ! | ATCCCTTGATAATATTCTCT+TGG | + | chr8.2:29804317-29804336 | MS.gene28867:CDS | 30.0% |
| ! | GGTAATGATTTTAAGCTTCT+GGG | + | chr8.2:29804016-29804035 | MS.gene28867:intron | 30.0% |
| ! | TTGATTTTATGTTCAGTTGG+TGG | + | chr8.2:29804122-29804141 | MS.gene28867:intron | 30.0% |
| !! | ATTTTATAATTTGTAGGGGC+AGG | + | chr8.2:29804556-29804575 | MS.gene28867:intron | 30.0% |
| !!! | AAAGGAGTAAACTTGTTTTG+TGG | - | chr8.2:29805749-29805768 | None:intergenic | 30.0% |
| !!! | ACATTTTTGGCTCTAACATA+AGG | - | chr8.2:29803993-29804012 | None:intergenic | 30.0% |
| AAATGATTCAGAACGAGTTC+TGG | - | chr8.2:29803937-29803956 | None:intergenic | 35.0% | |
| AACAAGGTGAATGTGGAATT+AGG | + | chr8.2:29805923-29805942 | MS.gene28867:CDS | 35.0% | |
| AATGAAGGGAAACTTAGGAT+GGG | + | chr8.2:29805268-29805287 | MS.gene28867:intron | 35.0% | |
| ATGACCAAATTGCTCTATTG+AGG | + | chr8.2:29804697-29804716 | MS.gene28867:CDS | 35.0% | |
| GATGATTTCGCTGCATAAAA+TGG | - | chr8.2:29805803-29805822 | None:intergenic | 35.0% | |
| GGCATTTGTTTGATGAAACA+AGG | + | chr8.2:29805383-29805402 | MS.gene28867:CDS | 35.0% | |
| GTATTTAATCCAACAAGGCT+TGG | + | chr8.2:29804728-29804747 | MS.gene28867:CDS | 35.0% | |
| GTGTGAATGTTATCCTTACA+AGG | - | chr8.2:29805623-29805642 | None:intergenic | 35.0% | |
| GTTGTTGATGTTGTTCTGAT+TGG | - | chr8.2:29805656-29805675 | None:intergenic | 35.0% | |
| TAATGAAGGGAAACTTAGGA+TGG | + | chr8.2:29805267-29805286 | MS.gene28867:intron | 35.0% | |
| TCTTCAAAGTCCTTAGTATC+AGG | - | chr8.2:29806010-29806029 | None:intergenic | 35.0% | |
| TGATTTCTTGCCTGATACTA+AGG | + | chr8.2:29805997-29806016 | MS.gene28867:CDS | 35.0% | |
| TGTTAGAGCCAAAAATGTTC+AGG | + | chr8.2:29803995-29804014 | MS.gene28867:CDS | 35.0% | |
| ! | AATCTTTAAAGAGTATGGGC+CGG | + | chr8.2:29805087-29805106 | MS.gene28867:intron | 35.0% |
| ! | AATGAAAATGCTGCTACTTC+TGG | + | chr8.2:29806073-29806092 | MS.gene28867:CDS | 35.0% |
| ! | ATGAAAATGCTGCTACTTCT+GGG | + | chr8.2:29806074-29806093 | MS.gene28867:CDS | 35.0% |
| ! | TGATTTTGAACACAGAGATG+TGG | + | chr8.2:29804666-29804685 | MS.gene28867:intron | 35.0% |
| ! | TTCTTGGTTCTTCATCAATC+TGG | + | chr8.2:29805588-29805607 | MS.gene28867:CDS | 35.0% |
| !! | GGATAGTGCTTTGAAAGATA+TGG | + | chr8.2:29804206-29804225 | MS.gene28867:CDS | 35.0% |
| !! | TTATGTTCAGTTGGTGGATA+AGG | + | chr8.2:29804128-29804147 | MS.gene28867:intron | 35.0% |
| !!! | AGACTCTTTGAAGCTTTTCT+TGG | + | chr8.2:29805572-29805591 | MS.gene28867:CDS | 35.0% |
| AATTGACAAGAGGAGGCTTA+AGG | + | chr8.2:29806111-29806130 | MS.gene28867:CDS | 40.0% | |
| ACAAAGACTGCTAGATCTCA+AGG | + | chr8.2:29804768-29804787 | MS.gene28867:CDS | 40.0% | |
| ACAGGAAGCCACTAGATTAT+TGG | + | chr8.2:29804815-29804834 | MS.gene28867:CDS | 40.0% | |
| AGACTTAAGAGAACAAGGTC+TGG | + | chr8.2:29805860-29805879 | MS.gene28867:CDS | 40.0% | |
| ATCACTCATAAGGTTCCTGT+TGG | + | chr8.2:29803960-29803979 | MS.gene28867:CDS | 40.0% | |
| ATGTTATCCTTACAAGGCTG+AGG | - | chr8.2:29805617-29805636 | None:intergenic | 40.0% | |
| CAAAGACTGCTAGATCTCAA+GGG | + | chr8.2:29804769-29804788 | MS.gene28867:CDS | 40.0% | |
| CACTCCTCTGTTCATCATTT+CGG | - | chr8.2:29805534-29805553 | None:intergenic | 40.0% | |
| CCAAGAAAATTGACAAGAGG+AGG | + | chr8.2:29806104-29806123 | MS.gene28867:CDS | 40.0% | |
| CTGAGAGACTTAAGAGAACA+AGG | + | chr8.2:29805855-29805874 | MS.gene28867:CDS | 40.0% | |
| GATTTCGCTGCATAAAATGG+CGG | - | chr8.2:29805800-29805819 | None:intergenic | 40.0% | |
| GCACTATACACTTGATCCAA+TGG | - | chr8.2:29804490-29804509 | None:intergenic | 40.0% | |
| GCTCCAAGAAAATTGACAAG+AGG | + | chr8.2:29806101-29806120 | MS.gene28867:CDS | 40.0% | |
| GTTGATGTTGTTCTGATTGG+TGG | - | chr8.2:29805653-29805672 | None:intergenic | 40.0% | |
| TAACTGCAGGTTTGACTCTA+TGG | - | chr8.2:29805436-29805455 | None:intergenic | 40.0% | |
| TATCAAGGGATTCTTGTGCT+TGG | - | chr8.2:29804308-29804327 | None:intergenic | 40.0% | |
| TGCAGCGAAATCATCTTTCA+AGG | + | chr8.2:29805808-29805827 | MS.gene28867:CDS | 40.0% | |
| TGTGCCTCAATAGAGCAATT+TGG | - | chr8.2:29804704-29804723 | None:intergenic | 40.0% | |
| TGTGTTGTACTATGCACCAT+TGG | + | chr8.2:29804471-29804490 | MS.gene28867:intron | 40.0% | |
| TTAAGCGAGTTGTTCACCAA+AGG | - | chr8.2:29805767-29805786 | None:intergenic | 40.0% | |
| TTTGAACACAGAGATGTGGT+AGG | + | chr8.2:29804670-29804689 | MS.gene28867:intron | 40.0% | |
| ! | CCTCCTCTTGTCAATTTTCT+TGG | - | chr8.2:29806107-29806126 | None:intergenic | 40.0% |
| ! | GAAGAAGTTTCAAGTCTCAG+TGG | + | chr8.2:29804791-29804810 | MS.gene28867:CDS | 40.0% |
| !! | ACATAAGGAGTATCACCAAC+AGG | - | chr8.2:29803978-29803997 | None:intergenic | 40.0% |
| !! | CATTTGCTGTGCTCTTTCAT+AGG | - | chr8.2:29805495-29805514 | None:intergenic | 40.0% |
| !! | GGTAAGAAAAGCATCACACA+TGG | + | chr8.2:29804836-29804855 | MS.gene28867:intron | 40.0% |
| !! | TGCTATTCTTGCTGCTGTTT+TGG | + | chr8.2:29806030-29806049 | MS.gene28867:CDS | 40.0% |
| !! | TTGCACATCTTGTTGTTGTC+TGG | - | chr8.2:29805359-29805378 | None:intergenic | 40.0% |
| !!! | CTATTCTTGCTGCTGTTTTG+GGG | + | chr8.2:29806032-29806051 | MS.gene28867:CDS | 40.0% |
| !!! | GCTATTCTTGCTGCTGTTTT+GGG | + | chr8.2:29806031-29806050 | MS.gene28867:CDS | 40.0% |
| AATGTGGAATTAGGTGTGCC+TGG | + | chr8.2:29805932-29805951 | MS.gene28867:CDS | 45.0% | |
| AGATGAGAATCTGAGCCTCT+TGG | - | chr8.2:29805467-29805486 | None:intergenic | 45.0% | |
| ATGTGGAATTAGGTGTGCCT+GGG | + | chr8.2:29805933-29805952 | MS.gene28867:CDS | 45.0% | |
| CGAAATGATGAACAGAGGAG+TGG | + | chr8.2:29805532-29805551 | MS.gene28867:CDS | 45.0% | |
| GAACAGCAACAAGGTGAATG+TGG | + | chr8.2:29805916-29805935 | MS.gene28867:CDS | 45.0% | |
| GAGTCCGAAATGATGAACAG+AGG | + | chr8.2:29805527-29805546 | MS.gene28867:CDS | 45.0% | |
| GATAAATGCGGGAGATAGAG+TGG | + | chr8.2:29804185-29804204 | MS.gene28867:CDS | 45.0% | |
| GGATGATGTGAACAGCAACA+AGG | + | chr8.2:29805907-29805926 | MS.gene28867:CDS | 45.0% | |
| GTCAAACCTGCAGTTACAGA+TGG | + | chr8.2:29805440-29805459 | MS.gene28867:CDS | 45.0% | |
| TGTTCACCTGCAAAACCTCT+TGG | + | chr8.2:29803906-29803925 | MS.gene28867:CDS | 45.0% | |
| TTTATCGCCGCCCAAAACAA+CGG | - | chr8.2:29804171-29804190 | None:intergenic | 45.0% | |
| ! | AGAGAGCGATTCCGTTGTTT+TGG | + | chr8.2:29804157-29804176 | MS.gene28867:CDS | 45.0% |
| ! | AGAGGTTTTGCAGGTGAACA+AGG | - | chr8.2:29803906-29803925 | None:intergenic | 45.0% |
| ! | CAACAAGGCTTGGCTTTCAA+TGG | + | chr8.2:29804738-29804757 | MS.gene28867:CDS | 45.0% |
| ! | CATTGAAAGCCAAGCCTTGT+TGG | - | chr8.2:29804740-29804759 | None:intergenic | 45.0% |
| ! | GAAACACCAAGAGGTTTTGC+AGG | - | chr8.2:29803915-29803934 | None:intergenic | 45.0% |
| ! | GTTTCAAGTCTCAGTGGAAC+AGG | + | chr8.2:29804797-29804816 | MS.gene28867:CDS | 45.0% |
| !! | AGGTGAACAAGGTGCTGATT+TGG | - | chr8.2:29803895-29803914 | None:intergenic | 45.0% |
| !! | GAACAAGGTGCTGATTTGGA+GGG | - | chr8.2:29803891-29803910 | None:intergenic | 45.0% |
| !! | GAGAGCGATTCCGTTGTTTT+GGG | + | chr8.2:29804158-29804177 | MS.gene28867:CDS | 45.0% |
| !! | TCAGTTGGTGGATAAGGATC+CGG | + | chr8.2:29804134-29804153 | MS.gene28867:intron | 45.0% |
| !! | TGAACAAGGTGCTGATTTGG+AGG | - | chr8.2:29803892-29803911 | None:intergenic | 45.0% |
| !! | TATAATTTAATCATAAAAAT+TGG | - | chr8.2:29804369-29804388 | None:intergenic | 5.0% |
| AACAACGGAATCGCTCTCTC+CGG | - | chr8.2:29804156-29804175 | None:intergenic | 50.0% | |
| ACAAGGTCTGGAAATGCTGC+AGG | + | chr8.2:29805872-29805891 | MS.gene28867:CDS | 50.0% | |
| CTTGGTCCATCTGTAACTGC+AGG | - | chr8.2:29805449-29805468 | None:intergenic | 50.0% | |
| GCAGTTACAGATGGACCAAG+AGG | + | chr8.2:29805449-29805468 | MS.gene28867:CDS | 50.0% | |
| TGATGAACAGAGGAGTGGAC+AGG | + | chr8.2:29805537-29805556 | MS.gene28867:CDS | 50.0% | |
| TGCCTGGGAACAAAGCAAGA+AGG | + | chr8.2:29805948-29805967 | MS.gene28867:CDS | 50.0% | |
| TGCTGCAGGATTACTGAGAG+TGG | + | chr8.2:29805886-29805905 | MS.gene28867:CDS | 50.0% | |
| ! | AGCCTTCTTGCTTTGTTCCC+AGG | - | chr8.2:29805953-29805972 | None:intergenic | 50.0% |
| ! | GATTTGGAGGGTCTGAAACC+TGG | - | chr8.2:29803879-29803898 | None:intergenic | 50.0% |
| ! | TTTTGGGCGGCGATAAATGC+GGG | + | chr8.2:29804174-29804193 | MS.gene28867:CDS | 50.0% |
| !! | CGAGTTCTGGAAACACCAAG+AGG | - | chr8.2:29803924-29803943 | None:intergenic | 50.0% |
| !! | GTTTTGGGCGGCGATAAATG+CGG | + | chr8.2:29804173-29804192 | MS.gene28867:CDS | 50.0% |
| !!! | AGCGATTCCGTTGTTTTGGG+CGG | + | chr8.2:29804161-29804180 | MS.gene28867:CDS | 50.0% |
| !!! | GAGTATGGGCCGGTTTGTTT+TGG | + | chr8.2:29805097-29805116 | MS.gene28867:intron | 50.0% |
| CTGGAGCTAGACAAAGCGCA+CGG | - | chr8.2:29805340-29805359 | None:intergenic | 55.0% | |
| GAGATGTGGAATGCTCCTCC+AGG | + | chr8.2:29803858-29803877 | MS.gene28867:CDS | 55.0% | |
| TAGACAAAGCGCACGGCGAT+AGG | - | chr8.2:29805333-29805352 | None:intergenic | 55.0% | |
| ! | CTGGCAACCTCAGCCTTGTA+AGG | + | chr8.2:29805607-29805626 | MS.gene28867:CDS | 55.0% |
| ! | TTGGAGGGTCTGAAACCTGG+AGG | - | chr8.2:29803876-29803895 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 29803849 | 29806174 | 29803849 | ID=MS.gene28867 |
| chr8.2 | mRNA | 29803849 | 29806174 | 29803849 | ID=MS.gene28867.t1;Parent=MS.gene28867 |
| chr8.2 | exon | 29803849 | 29804016 | 29803849 | ID=MS.gene28867.t1.exon1;Parent=MS.gene28867.t1 |
| chr8.2 | CDS | 29803849 | 29804016 | 29803849 | ID=cds.MS.gene28867.t1;Parent=MS.gene28867.t1 |
| chr8.2 | exon | 29804138 | 29804350 | 29804138 | ID=MS.gene28867.t1.exon2;Parent=MS.gene28867.t1 |
| chr8.2 | CDS | 29804138 | 29804350 | 29804138 | ID=cds.MS.gene28867.t1;Parent=MS.gene28867.t1 |
| chr8.2 | exon | 29804681 | 29804836 | 29804681 | ID=MS.gene28867.t1.exon3;Parent=MS.gene28867.t1 |
| chr8.2 | CDS | 29804681 | 29804836 | 29804681 | ID=cds.MS.gene28867.t1;Parent=MS.gene28867.t1 |
| chr8.2 | exon | 29805275 | 29806174 | 29805275 | ID=MS.gene28867.t1.exon4;Parent=MS.gene28867.t1 |
| chr8.2 | CDS | 29805275 | 29806174 | 29805275 | ID=cds.MS.gene28867.t1;Parent=MS.gene28867.t1 |
| Gene Sequence |
| Protein sequence |
