Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63320.t1 | XP_024633558.1 | 95.7 | 507 | 1 | 2 | 1 | 507 | 1 | 486 | 8.80E-283 | 982.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63320.t1 | Q8LPL5 | 71.1 | 512 | 112 | 8 | 1 | 507 | 1 | 481 | 7.4e-198 | 691.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63320.t1 | A0A396ISC0 | 95.7 | 507 | 1 | 2 | 1 | 507 | 1 | 486 | 6.3e-283 | 982.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051816 | MS.gene63320 | 0.80976 | 1.61E-50 | -1.69E-46 |
MS.gene051914 | MS.gene63320 | 0.826048 | 3.36E-54 | -1.69E-46 |
MS.gene051955 | MS.gene63320 | 0.806331 | 8.66E-50 | -1.69E-46 |
MS.gene052143 | MS.gene63320 | 0.837819 | 4.15E-57 | -1.69E-46 |
MS.gene052308 | MS.gene63320 | 0.868938 | 4.50E-66 | -1.69E-46 |
MS.gene052367 | MS.gene63320 | 0.853535 | 2.24E-61 | -1.69E-46 |
MS.gene053173 | MS.gene63320 | 0.822117 | 2.81E-53 | -1.69E-46 |
MS.gene053348 | MS.gene63320 | 0.827155 | 1.83E-54 | -1.69E-46 |
MS.gene054551 | MS.gene63320 | 0.845687 | 3.48E-59 | -1.69E-46 |
MS.gene054593 | MS.gene63320 | 0.852468 | 4.53E-61 | -1.69E-46 |
MS.gene054633 | MS.gene63320 | 0.812592 | 3.92E-51 | -1.69E-46 |
MS.gene054662 | MS.gene63320 | 0.807006 | 6.24E-50 | -1.69E-46 |
MS.gene054850 | MS.gene63320 | 0.801336 | 9.45E-49 | -1.69E-46 |
MS.gene054941 | MS.gene63320 | 0.814762 | 1.31E-51 | -1.69E-46 |
MS.gene055308 | MS.gene63320 | 0.884585 | 1.69E-71 | -1.69E-46 |
MS.gene055578 | MS.gene63320 | 0.8657 | 4.88E-65 | -1.69E-46 |
MS.gene055579 | MS.gene63320 | 0.840787 | 7.05E-58 | -1.69E-46 |
MS.gene055957 | MS.gene63320 | 0.858502 | 7.88E-63 | -1.69E-46 |
MS.gene056041 | MS.gene63320 | 0.874259 | 7.77E-68 | -1.69E-46 |
MS.gene056042 | MS.gene63320 | 0.816913 | 4.33E-52 | -1.69E-46 |
MS.gene05640 | MS.gene63320 | 0.86105 | 1.35E-63 | -1.69E-46 |
MS.gene056526 | MS.gene63320 | 0.812464 | 4.18E-51 | -1.69E-46 |
MS.gene056528 | MS.gene63320 | 0.841518 | 4.53E-58 | -1.69E-46 |
MS.gene05652 | MS.gene63320 | 0.839823 | 1.26E-57 | -1.69E-46 |
MS.gene057101 | MS.gene63320 | 0.814432 | 1.55E-51 | -1.69E-46 |
MS.gene057458 | MS.gene63320 | 0.849381 | 3.35E-60 | -1.69E-46 |
MS.gene058128 | MS.gene63320 | 0.882428 | 1.05E-70 | -1.69E-46 |
MS.gene058853 | MS.gene63320 | 0.888234 | 7.07E-73 | -1.69E-46 |
MS.gene059553 | MS.gene63320 | 0.821171 | 4.65E-53 | -1.69E-46 |
MS.gene059616 | MS.gene63320 | 0.852132 | 5.64E-61 | -1.69E-46 |
MS.gene060473 | MS.gene63320 | 0.827212 | 1.77E-54 | -1.69E-46 |
MS.gene060565 | MS.gene63320 | 0.817998 | 2.46E-52 | -1.69E-46 |
MS.gene06064 | MS.gene63320 | 0.810478 | 1.13E-50 | -1.69E-46 |
MS.gene06093 | MS.gene63320 | 0.841424 | 4.79E-58 | -1.69E-46 |
MS.gene061099 | MS.gene63320 | 0.893317 | 7.04E-75 | -1.69E-46 |
MS.gene061260 | MS.gene63320 | 0.84408 | 9.43E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene63320 | MS.gene42086 | PPI |
MS.gene63320 | MS.gene03215 | PPI |
MS.gene44305 | MS.gene63320 | PPI |
MS.gene46253 | MS.gene63320 | PPI |
MS.gene048045 | MS.gene63320 | PPI |
MS.gene63320 | MS.gene02559 | PPI |
MS.gene03185 | MS.gene63320 | PPI |
MS.gene63320 | MS.gene62819 | PPI |
MS.gene63320 | MS.gene033401 | PPI |
MS.gene011448 | MS.gene63320 | PPI |
MS.gene013771 | MS.gene63320 | PPI |
MS.gene63320 | MS.gene37226 | PPI |
MS.gene87756 | MS.gene63320 | PPI |
MS.gene87050 | MS.gene63320 | PPI |
MS.gene63320 | MS.gene013775 | PPI |
MS.gene29182 | MS.gene63320 | PPI |
MS.gene86206 | MS.gene63320 | PPI |
MS.gene63320 | MS.gene027709 | PPI |
MS.gene03219 | MS.gene63320 | PPI |
MS.gene03180 | MS.gene63320 | PPI |
MS.gene63320 | MS.gene03182 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63320.t1 | MTR_3g067940 | 94.280 | 507 | 1 | 2 | 1 | 507 | 1 | 479 | 0.0 | 962 |
MS.gene63320.t1 | MTR_4g102510 | 60.043 | 463 | 152 | 7 | 48 | 507 | 43 | 475 | 0.0 | 537 |
MS.gene63320.t1 | MTR_3g051690 | 42.384 | 453 | 207 | 10 | 57 | 494 | 33 | 446 | 9.43e-115 | 347 |
MS.gene63320.t1 | MTR_5g008010 | 44.018 | 443 | 200 | 9 | 51 | 484 | 26 | 429 | 2.18e-114 | 345 |
MS.gene63320.t1 | MTR_7g106870 | 49.415 | 342 | 157 | 6 | 157 | 486 | 96 | 433 | 1.32e-110 | 336 |
MS.gene63320.t1 | MTR_7g451830 | 45.507 | 345 | 167 | 5 | 156 | 492 | 92 | 423 | 2.50e-101 | 311 |
MS.gene63320.t1 | MTR_7g047640 | 45.507 | 345 | 167 | 5 | 156 | 492 | 92 | 423 | 2.50e-101 | 311 |
MS.gene63320.t1 | MTR_7g034625 | 48.366 | 306 | 148 | 4 | 191 | 486 | 17 | 322 | 6.56e-100 | 304 |
MS.gene63320.t1 | MTR_7g053100 | 47.352 | 321 | 153 | 6 | 192 | 496 | 112 | 432 | 4.52e-97 | 300 |
MS.gene63320.t1 | MTR_7g057540 | 50.165 | 303 | 140 | 5 | 192 | 484 | 104 | 405 | 5.91e-96 | 297 |
MS.gene63320.t1 | MTR_7g055590 | 50.165 | 303 | 140 | 5 | 192 | 484 | 104 | 405 | 3.65e-95 | 297 |
MS.gene63320.t1 | MTR_2g060710 | 36.207 | 464 | 246 | 11 | 57 | 507 | 26 | 452 | 4.56e-92 | 288 |
MS.gene63320.t1 | MTR_2g100460 | 36.254 | 331 | 182 | 5 | 190 | 507 | 72 | 386 | 4.57e-63 | 211 |
MS.gene63320.t1 | MTR_2g100540 | 36.977 | 311 | 157 | 9 | 190 | 492 | 102 | 381 | 1.22e-48 | 172 |
MS.gene63320.t1 | MTR_7g086360 | 23.113 | 212 | 157 | 3 | 276 | 485 | 48 | 255 | 2.15e-14 | 74.7 |
MS.gene63320.t1 | MTR_5g016370 | 24.126 | 286 | 164 | 10 | 206 | 483 | 312 | 552 | 1.57e-13 | 73.6 |
MS.gene63320.t1 | MTR_1g054300 | 24.521 | 261 | 180 | 10 | 224 | 481 | 235 | 481 | 2.44e-13 | 72.4 |
MS.gene63320.t1 | MTR_6g004040 | 26.708 | 161 | 112 | 3 | 239 | 397 | 57 | 213 | 1.15e-12 | 70.9 |
MS.gene63320.t1 | MTR_4g415070 | 52.830 | 53 | 25 | 0 | 432 | 484 | 55 | 107 | 2.01e-12 | 68.6 |
MS.gene63320.t1 | MTR_8g038550 | 24.719 | 267 | 183 | 10 | 244 | 501 | 186 | 443 | 2.57e-12 | 69.7 |
MS.gene63320.t1 | MTR_3g106080 | 25.414 | 181 | 128 | 4 | 220 | 398 | 441 | 616 | 1.73e-11 | 67.0 |
MS.gene63320.t1 | MTR_2g086140 | 27.854 | 219 | 115 | 8 | 254 | 433 | 24 | 238 | 2.35e-11 | 67.0 |
MS.gene63320.t1 | MTR_4g095058 | 24.000 | 250 | 174 | 9 | 244 | 483 | 292 | 535 | 3.32e-11 | 66.2 |
MS.gene63320.t1 | MTR_4g095058 | 24.000 | 250 | 174 | 9 | 244 | 483 | 290 | 533 | 3.74e-11 | 65.9 |
MS.gene63320.t1 | MTR_1g072140 | 25.263 | 190 | 134 | 6 | 295 | 482 | 41 | 224 | 3.79e-11 | 64.7 |
MS.gene63320.t1 | MTR_2g012630 | 27.094 | 203 | 128 | 6 | 209 | 397 | 16 | 212 | 5.88e-11 | 65.9 |
MS.gene63320.t1 | MTR_2g012630 | 27.094 | 203 | 128 | 6 | 209 | 397 | 16 | 212 | 6.16e-11 | 65.5 |
MS.gene63320.t1 | MTR_5g016350 | 24.126 | 286 | 164 | 11 | 206 | 483 | 300 | 540 | 8.22e-11 | 64.7 |
MS.gene63320.t1 | MTR_4g119620 | 25.991 | 227 | 133 | 9 | 277 | 482 | 21 | 233 | 9.75e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63320.t1 | AT5G13840 | 76.125 | 511 | 88 | 7 | 1 | 507 | 1 | 481 | 0.0 | 714 |
MS.gene63320.t1 | AT5G13840 | 76.125 | 511 | 88 | 7 | 1 | 507 | 1 | 481 | 0.0 | 714 |
MS.gene63320.t1 | AT4G22910 | 59.560 | 455 | 149 | 6 | 56 | 507 | 61 | 483 | 0.0 | 534 |
MS.gene63320.t1 | AT4G11920 | 59.657 | 466 | 147 | 7 | 48 | 507 | 45 | 475 | 0.0 | 518 |
MS.gene63320.t1 | AT4G33260 | 41.871 | 449 | 206 | 8 | 49 | 484 | 16 | 422 | 1.77e-111 | 338 |
MS.gene63320.t1 | AT4G33270 | 41.722 | 453 | 201 | 9 | 49 | 484 | 26 | 432 | 1.34e-110 | 336 |
MS.gene63320.t1 | AT5G27570 | 51.815 | 303 | 137 | 3 | 191 | 484 | 122 | 424 | 7.23e-108 | 329 |
MS.gene63320.t1 | AT4G33260 | 40.757 | 449 | 211 | 8 | 49 | 484 | 16 | 422 | 9.10e-106 | 323 |
MS.gene63320.t1 | AT5G27080 | 50.495 | 303 | 141 | 3 | 191 | 484 | 114 | 416 | 1.73e-105 | 322 |
MS.gene63320.t1 | AT5G26900 | 45.833 | 336 | 154 | 4 | 157 | 484 | 103 | 418 | 1.29e-102 | 315 |
MS.gene63320.t1 | AT5G27945 | 47.855 | 303 | 149 | 4 | 190 | 484 | 101 | 402 | 1.24e-92 | 289 |
MS.gene63320.t1 | AT5G13480 | 25.000 | 296 | 203 | 11 | 218 | 502 | 85 | 372 | 4.72e-15 | 78.6 |
MS.gene63320.t1 | AT5G13480 | 25.000 | 296 | 203 | 11 | 218 | 502 | 85 | 372 | 6.10e-15 | 78.2 |
MS.gene63320.t1 | AT5G13480 | 25.000 | 296 | 203 | 11 | 218 | 502 | 108 | 395 | 6.22e-15 | 78.2 |
MS.gene63320.t1 | AT5G13480 | 25.000 | 296 | 203 | 11 | 218 | 502 | 97 | 384 | 8.07e-15 | 77.8 |
MS.gene63320.t1 | AT5G52820 | 26.848 | 257 | 168 | 10 | 231 | 482 | 231 | 472 | 8.92e-15 | 77.0 |
MS.gene63320.t1 | AT2G43770 | 23.364 | 214 | 154 | 5 | 276 | 485 | 46 | 253 | 3.37e-14 | 74.3 |
MS.gene63320.t1 | AT5G23430 | 27.528 | 178 | 122 | 4 | 222 | 397 | 41 | 213 | 4.58e-14 | 75.5 |
MS.gene63320.t1 | AT5G23430 | 27.528 | 178 | 122 | 4 | 222 | 397 | 41 | 213 | 4.66e-14 | 75.5 |
MS.gene63320.t1 | AT5G23430 | 27.528 | 178 | 122 | 4 | 222 | 397 | 41 | 213 | 4.66e-14 | 75.5 |
MS.gene63320.t1 | AT5G08390 | 26.966 | 178 | 123 | 4 | 222 | 397 | 41 | 213 | 6.39e-14 | 75.1 |
MS.gene63320.t1 | AT3G49660 | 25.893 | 224 | 135 | 8 | 277 | 483 | 18 | 227 | 1.17e-13 | 72.4 |
MS.gene63320.t1 | AT3G49660 | 22.581 | 248 | 183 | 5 | 239 | 481 | 69 | 312 | 4.83e-12 | 67.4 |
MS.gene63320.t1 | AT1G61210 | 26.257 | 179 | 123 | 5 | 222 | 397 | 40 | 212 | 2.79e-12 | 70.1 |
MS.gene63320.t1 | AT1G61210 | 26.257 | 179 | 123 | 5 | 222 | 397 | 40 | 212 | 2.82e-12 | 70.1 |
MS.gene63320.t1 | AT1G61210 | 26.257 | 179 | 123 | 5 | 222 | 397 | 40 | 212 | 2.85e-12 | 70.1 |
MS.gene63320.t1 | AT1G11160 | 27.933 | 179 | 120 | 5 | 222 | 397 | 40 | 212 | 3.35e-12 | 69.7 |
MS.gene63320.t1 | AT1G11160 | 27.933 | 179 | 120 | 5 | 222 | 397 | 40 | 212 | 3.55e-12 | 69.7 |
MS.gene63320.t1 | AT1G11160 | 27.933 | 179 | 120 | 5 | 222 | 397 | 40 | 212 | 3.62e-12 | 69.7 |
MS.gene63320.t1 | AT4G35370 | 26.230 | 183 | 87 | 6 | 244 | 400 | 219 | 379 | 4.31e-12 | 68.6 |
MS.gene63320.t1 | AT3G18130 | 27.344 | 256 | 156 | 8 | 252 | 483 | 74 | 323 | 4.37e-12 | 67.8 |
MS.gene63320.t1 | AT1G11160 | 27.564 | 156 | 107 | 3 | 244 | 397 | 19 | 170 | 6.48e-12 | 68.9 |
MS.gene63320.t1 | AT3G44530 | 27.313 | 227 | 124 | 7 | 244 | 433 | 16 | 238 | 1.03e-11 | 68.2 |
MS.gene63320.t1 | AT5G25150 | 24.747 | 198 | 142 | 5 | 213 | 408 | 433 | 625 | 1.09e-11 | 67.8 |
MS.gene63320.t1 | AT3G44530 | 27.313 | 227 | 124 | 7 | 244 | 433 | 16 | 238 | 1.12e-11 | 68.2 |
MS.gene63320.t1 | AT5G25150 | 24.747 | 198 | 142 | 5 | 213 | 408 | 433 | 625 | 1.17e-11 | 67.8 |
MS.gene63320.t1 | AT1G15440 | 28.977 | 176 | 119 | 3 | 316 | 489 | 381 | 552 | 2.43e-11 | 67.0 |
MS.gene63320.t1 | AT5G43920 | 25.140 | 179 | 125 | 3 | 311 | 483 | 211 | 386 | 2.48e-11 | 66.6 |
MS.gene63320.t1 | AT1G15440 | 28.977 | 176 | 119 | 3 | 316 | 489 | 341 | 512 | 2.49e-11 | 67.0 |
Find 140 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCATGGAATTCTCGCATTT+TGG | 0.202786 | 3.3:-60082486 | MS.gene63320:CDS |
CTGATCGGTGTATTCGTTTC+TGG | 0.223974 | 3.3:-60081991 | MS.gene63320:CDS |
GGGATGAGACTCTGCGGTTT+TGG | 0.238154 | 3.3:-60081432 | MS.gene63320:CDS |
TGCTTATGAATCATCTGATT+TGG | 0.243659 | 3.3:+60081248 | None:intergenic |
CAAAGGCCTGTATCTTTAAC+TGG | 0.271405 | 3.3:+60081286 | None:intergenic |
CAGAGCAACCTTCTCGTATC+TGG | 0.287630 | 3.3:-60082025 | MS.gene63320:CDS |
AATTAGGTTGCAACTCTAAC+TGG | 0.295863 | 3.3:-60081631 | MS.gene63320:intron |
AATATCGAAGGCGAAGAAAA+AGG | 0.319187 | 3.3:+60083766 | None:intergenic |
TTGGCACTTGTGTTTATCTC+TGG | 0.333779 | 3.3:-60082875 | MS.gene63320:CDS |
GCTTATGAATCATCTGATTT+GGG | 0.337855 | 3.3:+60081249 | None:intergenic |
AGGGTTCCAAGCGACTTTAT+TGG | 0.361219 | 3.3:-60082422 | MS.gene63320:CDS |
CTTGCCTTGTGGGGTGTCTT+GGG | 0.375928 | 3.3:+60083682 | None:intergenic |
GGAACTTTCCTAGGAGGCTT+AGG | 0.390050 | 3.3:+60083703 | None:intergenic |
TCTCCTTCTTCTTCTCCTGC+AGG | 0.390074 | 3.3:-60083868 | MS.gene63320:CDS |
TCATTACTCCCTTCTTTAAC+CGG | 0.390491 | 3.3:+60083940 | None:intergenic |
GACTTTATTGGCAAGCTTGT+CGG | 0.390886 | 3.3:-60082410 | MS.gene63320:CDS |
ACTTGCCTTGTGGGGTGTCT+TGG | 0.391242 | 3.3:+60083681 | None:intergenic |
TCGATATTTGGAAGAAATGA+TGG | 0.394918 | 3.3:-60083751 | MS.gene63320:CDS |
GGTGTCTTGGGAACTTTCCT+AGG | 0.397288 | 3.3:+60083694 | None:intergenic |
TCTTCTTCTCCTGCAGGTTG+TGG | 0.401970 | 3.3:-60083862 | MS.gene63320:CDS |
CCTTCAACTTGACAGGTTTG+TGG | 0.403871 | 3.3:-60082290 | MS.gene63320:intron |
TCTCCTGCAGGTTGTGGTGT+TGG | 0.409448 | 3.3:-60083856 | MS.gene63320:CDS |
GATGACCGGGAACTTGCTTC+TGG | 0.413514 | 3.3:-60082251 | MS.gene63320:CDS |
GTTATTGTTGACATCCCTGC+TGG | 0.415431 | 3.3:+60084135 | None:intergenic |
CTCTGTTGACACTGGAAGCC+AGG | 0.417288 | 3.3:-60081942 | MS.gene63320:intron |
TTCTGGTGGTAATGATAATC+AGG | 0.417463 | 3.3:-60082234 | MS.gene63320:intron |
TACCACCAGAAGCAAGTTCC+CGG | 0.418042 | 3.3:+60082246 | None:intergenic |
TGCAGGTGTGTAACCTTGCT+TGG | 0.418904 | 3.3:-60081841 | MS.gene63320:intron |
GGATGGTACTAAATGCAAAA+AGG | 0.422280 | 3.3:-60082549 | MS.gene63320:CDS |
TGCAATGTCTCCTGATGGTC+AGG | 0.422711 | 3.3:-60081584 | MS.gene63320:intron |
TTTACTTGAATCTTGTGGAT+TGG | 0.423069 | 3.3:-60082926 | MS.gene63320:CDS |
TACAAACGGTGGTCAAGTTC+AGG | 0.428094 | 3.3:-60082666 | MS.gene63320:intron |
GCACGAGGCGAAGCGGAAGA+AGG | 0.429921 | 3.3:+60084081 | None:intergenic |
GGAGTAATGAGGCTTATAAT+AGG | 0.434256 | 3.3:-60083927 | MS.gene63320:CDS |
CAGTGTCAACAGAGTTCAAT+TGG | 0.437042 | 3.3:+60081951 | None:intergenic |
CTACTCCTCCTAAGCCTCCT+AGG | 0.441271 | 3.3:-60083711 | MS.gene63320:CDS |
CGTTTCTGGAACACGACAAA+TGG | 0.442087 | 3.3:-60081977 | MS.gene63320:CDS |
ACTCTCAACAACCAACTTTG+AGG | 0.442538 | 3.3:-60082096 | MS.gene63320:CDS |
GGAGGGCATCAAACAAGAAC+TGG | 0.464093 | 3.3:-60082515 | MS.gene63320:CDS |
GATACAGGCCTTTGGTCACT+AGG | 0.464727 | 3.3:-60081277 | MS.gene63320:CDS |
CAGGCCCCAGTTAAAGATAC+AGG | 0.466060 | 3.3:-60081292 | MS.gene63320:CDS |
GAAGAAGGAGAAGCAAAATC+AGG | 0.474147 | 3.3:+60083880 | None:intergenic |
TCAAACAAGAACTGGTGTCT+TGG | 0.477919 | 3.3:-60082507 | MS.gene63320:CDS |
CAGACAATAGTGACTGGTGC+TGG | 0.478559 | 3.3:-60081454 | MS.gene63320:CDS |
TTCATATCCATTGGTACAAA+CGG | 0.479950 | 3.3:-60082680 | MS.gene63320:CDS |
CACGAGGCGAAGCGGAAGAA+GGG | 0.481206 | 3.3:+60084082 | None:intergenic |
AATAATACCTTTGCTAGTGA+TGG | 0.483310 | 3.3:+60081749 | None:intergenic |
TTGACCACCGTTTGTACCAA+TGG | 0.487746 | 3.3:+60082673 | None:intergenic |
TCCCTTCTTTAACCGGTGAC+TGG | 0.494990 | 3.3:+60083947 | None:intergenic |
TGTGACTTGGGACCTTATGA+TGG | 0.495508 | 3.3:-60082737 | MS.gene63320:CDS |
GACAGGTTTGTGGATTGAAA+TGG | 0.496996 | 3.3:-60082280 | MS.gene63320:intron |
TCTTCAAGACTGCATACATT+CGG | 0.497264 | 3.3:-60083982 | MS.gene63320:CDS |
GGTGACTAAGCTGTGTGACT+TGG | 0.498148 | 3.3:-60082750 | MS.gene63320:CDS |
AGCAAGTTCCCGGTCATCAC+AGG | 0.498721 | 3.3:+60082256 | None:intergenic |
TGGACATTTACCTGACCATC+AGG | 0.499399 | 3.3:+60081574 | None:intergenic |
GGATATGAAGGAACCCTCCT+TGG | 0.504932 | 3.3:+60082694 | None:intergenic |
TGGCTTCAGGAAGCAGGGAT+AGG | 0.505574 | 3.3:-60082466 | MS.gene63320:CDS |
CAGTTAAAGATACAGGCCTT+TGG | 0.507215 | 3.3:-60081285 | MS.gene63320:CDS |
TCAGGTCTAAACCTCCCAGC+AGG | 0.508097 | 3.3:-60084150 | MS.gene63320:CDS |
GAGGGTTCCTTCATATCCAT+TGG | 0.508547 | 3.3:-60082689 | MS.gene63320:CDS |
AGCTTGCCAATAAAGTCGCT+TGG | 0.510546 | 3.3:+60082416 | None:intergenic |
AACCAGTCACCGGTTAAAGA+AGG | 0.514252 | 3.3:-60083949 | MS.gene63320:CDS |
AACCTCAACATATTCTTACT+CGG | 0.518937 | 3.3:+60083817 | None:intergenic |
TGAAATGGTCCTGTGATGAC+CGG | 0.522032 | 3.3:-60082265 | MS.gene63320:CDS |
CGATATTTGGAAGAAATGAT+GGG | 0.526164 | 3.3:-60083750 | MS.gene63320:CDS |
TATATGAGCAGCTATTGGTA+TGG | 0.528902 | 3.3:-60082126 | MS.gene63320:intron |
CAAGAACTGGTGTCTTGGCA+TGG | 0.529236 | 3.3:-60082502 | MS.gene63320:CDS |
GAACCAACACCACAACCTGC+AGG | 0.531310 | 3.3:+60083853 | None:intergenic |
TGAATCATCTGATTTGGGTG+CGG | 0.533378 | 3.3:+60081254 | None:intergenic |
GTTTGTACCAATGGATATGA+AGG | 0.534733 | 3.3:+60082682 | None:intergenic |
TAAAAGTCATCTTGAAGTGA+AGG | 0.536272 | 3.3:+60082945 | None:intergenic |
TATGAATCTGTCACTACACT+TGG | 0.538788 | 3.3:+60084017 | None:intergenic |
GAATCTGTCACTACACTTGG+AGG | 0.541099 | 3.3:+60084020 | None:intergenic |
TCTGTTCAGTGGACCAAGGA+GGG | 0.542314 | 3.3:-60082707 | MS.gene63320:CDS |
CTGCTGTGAAAGCCATTGCT+TGG | 0.542537 | 3.3:-60082057 | MS.gene63320:CDS |
AATACTCTAGCAGTGGGACT+TGG | 0.547037 | 3.3:-60082894 | MS.gene63320:CDS |
GAATATGTTGAGGTTTAAGA+CGG | 0.551632 | 3.3:-60083809 | MS.gene63320:CDS |
ACAGAACAGACACCATCATA+AGG | 0.552740 | 3.3:+60082725 | None:intergenic |
TTACTCACAAAATCAAATCA+TGG | 0.552909 | 3.3:-60081783 | MS.gene63320:CDS |
CAACCTGCAGGAGAAGAAGA+AGG | 0.554584 | 3.3:+60083865 | None:intergenic |
TTCTTACTCGGACTCACCAA+CGG | 0.555252 | 3.3:+60083829 | None:intergenic |
GTGACTAAGCTGTGTGACTT+GGG | 0.556960 | 3.3:-60082749 | MS.gene63320:CDS |
AGGTTTAAGACGGAGAGTTG+TGG | 0.557810 | 3.3:-60083799 | MS.gene63320:CDS |
CACAAAATCAAATCATGGTG+TGG | 0.560137 | 3.3:-60081778 | MS.gene63320:CDS |
TTATTGTTGACATCCCTGCT+GGG | 0.562161 | 3.3:+60084136 | None:intergenic |
ACTTTCCTAGGAGGCTTAGG+AGG | 0.563823 | 3.3:+60083706 | None:intergenic |
GAAATATCCATCACTAGCAA+AGG | 0.565549 | 3.3:-60081756 | MS.gene63320:intron |
GTCTTGGGAACTTTCCTAGG+AGG | 0.566632 | 3.3:+60083697 | None:intergenic |
ATGGTGTCTGTTCTGTTCAG+TGG | 0.568692 | 3.3:-60082718 | MS.gene63320:CDS |
GTTTGGTAACAGATTTGGGA+TGG | 0.569490 | 3.3:-60082566 | MS.gene63320:intron |
AACCTTCTCGTATCTGGAGG+TGG | 0.572049 | 3.3:-60082019 | MS.gene63320:CDS |
ATGGAGAGGGTGTTGATGAG+AGG | 0.580002 | 3.3:+60084049 | None:intergenic |
TTGTGGTGTTGGTTCGCCGT+TGG | 0.584804 | 3.3:-60083845 | MS.gene63320:CDS |
ACCAGTCACCGGTTAAAGAA+GGG | 0.584887 | 3.3:-60083948 | MS.gene63320:CDS |
ACGAGAAGGTTGCTCTGATG+AGG | 0.586636 | 3.3:+60082031 | None:intergenic |
AAAGGCCTGTATCTTTAACT+GGG | 0.587939 | 3.3:+60081287 | None:intergenic |
AGACAATAGTGACTGGTGCT+GGG | 0.590497 | 3.3:-60081453 | MS.gene63320:CDS |
CAATTGAACTCTGTTGACAC+TGG | 0.590791 | 3.3:-60081950 | MS.gene63320:CDS |
CTCGCAAAATACTCTAGCAG+TGG | 0.592499 | 3.3:-60082901 | MS.gene63320:CDS |
TCATTTCTTCCAAATATCGA+AGG | 0.592894 | 3.3:+60083754 | None:intergenic |
CTGGAGGTGGAACTGCTGAT+CGG | 0.593470 | 3.3:-60082006 | MS.gene63320:CDS |
TTCTGTTCAGTGGACCAAGG+AGG | 0.595713 | 3.3:-60082708 | MS.gene63320:CDS |
GACCATCAGGAGACATTGCA+AGG | 0.595767 | 3.3:+60081587 | None:intergenic |
ACGAGGCGAAGCGGAAGAAG+GGG | 0.599832 | 3.3:+60084083 | None:intergenic |
TACCTTGCAATGTCTCCTGA+TGG | 0.601989 | 3.3:-60081589 | MS.gene63320:CDS |
TGCTCTGTAAGCCTCAAAGT+TGG | 0.603299 | 3.3:+60082085 | None:intergenic |
GAAATGGTCCTGTGATGACC+GGG | 0.607983 | 3.3:-60082264 | MS.gene63320:CDS |
TTGATAGCGTTTCAAGACGG+AGG | 0.610384 | 3.3:+60084109 | None:intergenic |
CTGTTCTGTTCAGTGGACCA+AGG | 0.611176 | 3.3:-60082711 | MS.gene63320:CDS |
CAATTGCAGACAATAGTGAC+TGG | 0.618146 | 3.3:-60081460 | MS.gene63320:intron |
TGATAGCGTTTCAAGACGGA+GGG | 0.619878 | 3.3:+60084110 | None:intergenic |
CTGATGAGGTGACCAAGCAA+TGG | 0.623695 | 3.3:+60082045 | None:intergenic |
TAGCGTTTCAAGACGGAGGG+AGG | 0.625960 | 3.3:+60084113 | None:intergenic |
AGCAACCTTCTCGTATCTGG+AGG | 0.630408 | 3.3:-60082022 | MS.gene63320:CDS |
GGGTGCGGCCTAGTGACCAA+AGG | 0.631232 | 3.3:+60081269 | None:intergenic |
TGTCAACAGAGTTCAATTGG+TGG | 0.632166 | 3.3:+60081954 | None:intergenic |
CAGGTCTAAACCTCCCAGCA+GGG | 0.636073 | 3.3:-60084149 | MS.gene63320:CDS |
ACATACTTCAGCATGACATG+AGG | 0.639225 | 3.3:-60082442 | MS.gene63320:CDS |
TTGTTGACATCCCTGCTGGG+AGG | 0.640070 | 3.3:+60084139 | None:intergenic |
TTCCACCTCCAGATACGAGA+AGG | 0.640711 | 3.3:+60082017 | None:intergenic |
ATTAATCGATAACCAGTCAC+CGG | 0.643856 | 3.3:-60083959 | MS.gene63320:CDS |
GTGTTGATAGCGTTTCAAGA+CGG | 0.644951 | 3.3:+60084106 | None:intergenic |
TCGCAAAATACTCTAGCAGT+GGG | 0.650045 | 3.3:-60082900 | MS.gene63320:CDS |
TGAGATCGCACGAGGCGAAG+CGG | 0.650294 | 3.3:+60084074 | None:intergenic |
AAAAGGTCAGAACAATGGGA+GGG | 0.656118 | 3.3:-60082532 | MS.gene63320:CDS |
GACAATAGTGACTGGTGCTG+GGG | 0.659564 | 3.3:-60081452 | MS.gene63320:CDS |
CATACTTCAGCATGACATGA+GGG | 0.660026 | 3.3:-60082441 | MS.gene63320:CDS |
CGAGGCGAAGCGGAAGAAGG+GGG | 0.662895 | 3.3:+60084084 | None:intergenic |
GGTTAAAGAAGGGAGTAATG+AGG | 0.665035 | 3.3:-60083938 | MS.gene63320:CDS |
GACCGGGAACTTGCTTCTGG+TGG | 0.665213 | 3.3:-60082248 | MS.gene63320:CDS |
GTCCGAGTAAGAATATGTTG+AGG | 0.666814 | 3.3:-60083819 | MS.gene63320:CDS |
AATGAGCTAGTGAGTACACA+TGG | 0.668243 | 3.3:-60081806 | MS.gene63320:CDS |
GGTATAGTACTCTCATGCTG+TGG | 0.672992 | 3.3:+60081608 | None:intergenic |
GCTTGTCGGCCACAAATCCG+AGG | 0.677734 | 3.3:-60082396 | MS.gene63320:intron |
GAGAGGTTTGAGATCGCACG+AGG | 0.678836 | 3.3:+60084066 | None:intergenic |
AGTCTTGAAGATGATCTGCA+AGG | 0.682253 | 3.3:+60083994 | None:intergenic |
AAGGCCTGTATCTTTAACTG+GGG | 0.685695 | 3.3:+60081288 | None:intergenic |
AGTTCCCAAGACACCCCACA+AGG | 0.689900 | 3.3:-60083686 | MS.gene63320:CDS |
ATATCCATTGGTACAAACGG+TGG | 0.716983 | 3.3:-60082677 | MS.gene63320:CDS |
GTGCTGGGGATGAGACTCTG+CGG | 0.730545 | 3.3:-60081438 | MS.gene63320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTGATGTAAAAATTAA+GGG | + | chr3.3:60083933-60083952 | None:intergenic | 10.0% |
!! | TAAAATTGATGTAAAAATTA+AGG | + | chr3.3:60083934-60083953 | None:intergenic | 10.0% |
!! | TAATTAAGAAAAATTTCATA+TGG | + | chr3.3:60083786-60083805 | None:intergenic | 10.0% |
!! | TTGTTTATGATATAATAATA+GGG | + | chr3.3:60083899-60083918 | None:intergenic | 10.0% |
!! | TTTGTTTATGATATAATAAT+AGG | + | chr3.3:60083900-60083919 | None:intergenic | 10.0% |
!!! | ATATGAAATTTTTCTTAATT+AGG | - | chr3.3:60083785-60083804 | MS.gene63320:CDS | 10.0% |
!! | AATATGCAATAATTGAAAAT+TGG | + | chr3.3:60084071-60084090 | None:intergenic | 15.0% |
!! | TCAAAATATTTACACAAAAA+CGG | + | chr3.3:60081797-60081816 | None:intergenic | 15.0% |
!! | TATGTAAGTTATGAAATTGA+TGG | - | chr3.3:60083109-60083128 | MS.gene63320:CDS | 20.0% |
!! | TCAAATACTTAAACTTACAA+AGG | + | chr3.3:60082360-60082379 | None:intergenic | 20.0% |
!!! | ACAATTAGGATTTTAAATAG+AGG | + | chr3.3:60082239-60082258 | None:intergenic | 20.0% |
!!! | ACTTGATAATCATTTCTAAT+TGG | + | chr3.3:60083743-60083762 | None:intergenic | 20.0% |
!!! | ATATTGATTCTTCAAAAAAG+AGG | + | chr3.3:60083528-60083547 | None:intergenic | 20.0% |
!!! | ATTTTACTGTATTTGAGAAT+TGG | - | chr3.3:60081832-60081851 | MS.gene63320:CDS | 20.0% |
!!! | TACTAATTTGTTGTGATTTT+AGG | - | chr3.3:60082046-60082065 | MS.gene63320:CDS | 20.0% |
!!! | TATTTAATGCATAATTTTGC+AGG | - | chr3.3:60083574-60083593 | MS.gene63320:intron | 20.0% |
!!! | TTTGTGTAAATATTTTGAAC+AGG | - | chr3.3:60081799-60081818 | MS.gene63320:CDS | 20.0% |
!!! | TTTTACTGTATTTGAGAATT+GGG | - | chr3.3:60081833-60081852 | MS.gene63320:CDS | 20.0% |
! | AAATTGAACATATATCTGTG+TGG | - | chr3.3:60082653-60082672 | MS.gene63320:intron | 25.0% |
! | ACAGTTACAATAATATATCG+TGG | - | chr3.3:60082128-60082147 | MS.gene63320:intron | 25.0% |
! | AGATAATATGTTACCTTGAT+TGG | - | chr3.3:60081858-60081877 | MS.gene63320:intron | 25.0% |
! | ATACTAAACAGATAGATAGA+AGG | + | chr3.3:60083247-60083266 | None:intergenic | 25.0% |
! | CAATCATCAAATCAAATACA+TGG | + | chr3.3:60082827-60082846 | None:intergenic | 25.0% |
! | CACAACAAATTAGTAAAACT+AGG | + | chr3.3:60082041-60082060 | None:intergenic | 25.0% |
! | GTAAGTTTAAGTATTTGAGA+GGG | - | chr3.3:60082362-60082381 | MS.gene63320:intron | 25.0% |
! | TCATAGTGTATAACAGTATA+AGG | - | chr3.3:60081988-60082007 | MS.gene63320:CDS | 25.0% |
! | TGTAAGTTTAAGTATTTGAG+AGG | - | chr3.3:60082361-60082380 | MS.gene63320:intron | 25.0% |
! | TGTACATGTAATGATATTGT+TGG | + | chr3.3:60082630-60082649 | None:intergenic | 25.0% |
! | TTACTCACAAAATCAAATCA+TGG | - | chr3.3:60083649-60083668 | MS.gene63320:intron | 25.0% |
!! | AATAACAATAAGAGCTTGTT+TGG | - | chr3.3:60082849-60082868 | MS.gene63320:intron | 25.0% |
!! | TAATGATATTGTTGGCATTT+TGG | + | chr3.3:60082622-60082641 | None:intergenic | 25.0% |
!! | TTAGGATTTTAAATAGAGGT+TGG | + | chr3.3:60082235-60082254 | None:intergenic | 25.0% |
!! | TTGTTGAAATCTGAACTTTT+TGG | - | chr3.3:60081528-60081547 | MS.gene63320:intron | 25.0% |
!!! | AAAGTGTATACTGATTTTGT+AGG | - | chr3.3:60081899-60081918 | MS.gene63320:intron | 25.0% |
!!! | ATACTGATTTTGTAGGATAT+AGG | - | chr3.3:60081906-60081925 | MS.gene63320:intron | 25.0% |
AAAGATAAAAACTTGCCTTG+TGG | + | chr3.3:60081764-60081783 | None:intergenic | 30.0% | |
AACCTCAACATATTCTTACT+CGG | + | chr3.3:60081618-60081637 | None:intergenic | 30.0% | |
AAGATAAAAACTTGCCTTGT+GGG | + | chr3.3:60081763-60081782 | None:intergenic | 30.0% | |
AATAATACCTTTGCTAGTGA+TGG | + | chr3.3:60083686-60083705 | None:intergenic | 30.0% | |
AATATGTTACCTTGATTGGT+AGG | - | chr3.3:60081862-60081881 | MS.gene63320:intron | 30.0% | |
AATCAACTCATAACCAGATT+AGG | + | chr3.3:60082269-60082288 | None:intergenic | 30.0% | |
AATTGTAGAAACTCCTAATC+TGG | - | chr3.3:60082253-60082272 | MS.gene63320:CDS | 30.0% | |
CAAATCAAAGTAAGCTAACA+AGG | + | chr3.3:60082794-60082813 | None:intergenic | 30.0% | |
CGATATTTGGAAGAAATGAT+GGG | - | chr3.3:60081682-60081701 | MS.gene63320:intron | 30.0% | |
CTGAAGCAAAAAGAAAAGTT+AGG | + | chr3.3:60084123-60084142 | None:intergenic | 30.0% | |
GAATATGTTGAGGTTTAAGA+CGG | - | chr3.3:60081623-60081642 | MS.gene63320:CDS | 30.0% | |
GATTAGGAGTTTCTACAATT+AGG | + | chr3.3:60082253-60082272 | None:intergenic | 30.0% | |
TAAAAGTCATCTTGAAGTGA+AGG | + | chr3.3:60082490-60082509 | None:intergenic | 30.0% | |
TAATCAAATCCTACCAATCA+AGG | + | chr3.3:60081874-60081893 | None:intergenic | 30.0% | |
TAGGGAATTATGTTGTTAAG+TGG | + | chr3.3:60083881-60083900 | None:intergenic | 30.0% | |
TATGCTATGACTCTATCTTA+GGG | + | chr3.3:60081948-60081967 | None:intergenic | 30.0% | |
TCATTTCTTCCAAATATCGA+AGG | + | chr3.3:60081681-60081700 | None:intergenic | 30.0% | |
TCGATATTTGGAAGAAATGA+TGG | - | chr3.3:60081681-60081700 | MS.gene63320:intron | 30.0% | |
TTCATATCCATTGGTACAAA+CGG | - | chr3.3:60082752-60082771 | MS.gene63320:CDS | 30.0% | |
TTGATTGGTAGGATTTGATT+AGG | - | chr3.3:60081873-60081892 | MS.gene63320:intron | 30.0% | |
TTTACTTGAATCTTGTGGAT+TGG | - | chr3.3:60082506-60082525 | MS.gene63320:CDS | 30.0% | |
! | CTAACTTTTCTTTTTGCTTC+AGG | - | chr3.3:60084121-60084140 | MS.gene63320:CDS | 30.0% |
! | CTTGTTAGCTTACTTTGATT+TGG | - | chr3.3:60082792-60082811 | MS.gene63320:intron | 30.0% |
! | GAGTTCTTTTAAGCAATACT+AGG | + | chr3.3:60084099-60084118 | None:intergenic | 30.0% |
! | GTCAAATGGTTTTTATACCT+CGG | + | chr3.3:60083056-60083075 | None:intergenic | 30.0% |
! | TGACTTTTACTTGAATCTTG+TGG | - | chr3.3:60082501-60082520 | MS.gene63320:CDS | 30.0% |
! | TGTTTTATATGAGCAGCTAT+TGG | - | chr3.3:60083301-60083320 | MS.gene63320:intron | 30.0% |
! | TTACAGGTGTTTTCATTGAT+GGG | + | chr3.3:60084034-60084053 | None:intergenic | 30.0% |
! | TTACATTTTTACTCCAAGCA+AGG | + | chr3.3:60083607-60083626 | None:intergenic | 30.0% |
! | TTTTTATCCTTCAACTTGAC+AGG | - | chr3.3:60083135-60083154 | MS.gene63320:intron | 30.0% |
!!! | AAATGATGGGTTTTGTAATG+AGG | - | chr3.3:60081695-60081714 | MS.gene63320:intron | 30.0% |
!!! | AAGACTAGGGTTTTAAATAG+AGG | - | chr3.3:60082097-60082116 | MS.gene63320:CDS | 30.0% |
!!! | AATGATGGGTTTTGTAATGA+GGG | - | chr3.3:60081696-60081715 | MS.gene63320:intron | 30.0% |
AAAACTAGGATTGTCATGAG+TGG | + | chr3.3:60082027-60082046 | None:intergenic | 35.0% | |
AAAGGCCTGTATCTTTAACT+GGG | + | chr3.3:60084148-60084167 | None:intergenic | 35.0% | |
AAGAGGTAAGAAAGTAAACC+TGG | + | chr3.3:60083511-60083530 | None:intergenic | 35.0% | |
AATATCGAAGGCGAAGAAAA+AGG | + | chr3.3:60081669-60081688 | None:intergenic | 35.0% | |
AGATAAAAACTTGCCTTGTG+GGG | + | chr3.3:60081762-60081781 | None:intergenic | 35.0% | |
ATGACTCTATCTTAGGGTTT+AGG | + | chr3.3:60081942-60081961 | None:intergenic | 35.0% | |
ATGCAAAAAGGTCAGAACAA+TGG | - | chr3.3:60082895-60082914 | MS.gene63320:CDS | 35.0% | |
ATTAATCGATAACCAGTCAC+CGG | - | chr3.3:60081473-60081492 | MS.gene63320:intron | 35.0% | |
CACAAAATCAAATCATGGTG+TGG | - | chr3.3:60083654-60083673 | MS.gene63320:intron | 35.0% | |
CTATGCTATGACTCTATCTT+AGG | + | chr3.3:60081949-60081968 | None:intergenic | 35.0% | |
GAAATATCCATCACTAGCAA+AGG | - | chr3.3:60083676-60083695 | MS.gene63320:intron | 35.0% | |
GGAGTAATGAGGCTTATAAT+AGG | - | chr3.3:60081505-60081524 | MS.gene63320:intron | 35.0% | |
GGATGGTACTAAATGCAAAA+AGG | - | chr3.3:60082883-60082902 | MS.gene63320:CDS | 35.0% | |
GTTTGTACCAATGGATATGA+AGG | + | chr3.3:60082753-60082772 | None:intergenic | 35.0% | |
TATATGAGCAGCTATTGGTA+TGG | - | chr3.3:60083306-60083325 | MS.gene63320:intron | 35.0% | |
TATGAATCTGTCACTACACT+TGG | + | chr3.3:60081418-60081437 | None:intergenic | 35.0% | |
TCACCACAAGCAAAAAAATC+AGG | - | chr3.3:60081264-60081283 | MS.gene63320:CDS | 35.0% | |
TCATTACTCCCTTCTTTAAC+CGG | + | chr3.3:60081495-60081514 | None:intergenic | 35.0% | |
TCTTCAAGACTGCATACATT+CGG | - | chr3.3:60081450-60081469 | MS.gene63320:CDS | 35.0% | |
TGATAAGATGCTCTCTTGTT+TGG | + | chr3.3:60083551-60083570 | None:intergenic | 35.0% | |
TGCAAAAAGGTCAGAACAAT+GGG | - | chr3.3:60082896-60082915 | MS.gene63320:CDS | 35.0% | |
! | AATTAGGTTGCAACTCTAAC+TGG | - | chr3.3:60083801-60083820 | MS.gene63320:CDS | 35.0% |
! | AGCTTGTTTGGTAACAGATT+TGG | - | chr3.3:60082861-60082880 | MS.gene63320:CDS | 35.0% |
! | CATATATCTGTGTGGTTTTC+AGG | - | chr3.3:60082661-60082680 | MS.gene63320:intron | 35.0% |
! | CTTACAGGTGTTTTCATTGA+TGG | + | chr3.3:60084035-60084054 | None:intergenic | 35.0% |
! | GCTTGTTTGGTAACAGATTT+GGG | - | chr3.3:60082862-60082881 | MS.gene63320:CDS | 35.0% |
! | GTTTTTATACCTCGGATTTG+TGG | + | chr3.3:60083048-60083067 | None:intergenic | 35.0% |
! | TTCTGGTGGTAATGATAATC+AGG | - | chr3.3:60083198-60083217 | MS.gene63320:intron | 35.0% |
! | TTTTCTTCGCCTTCGATATT+TGG | - | chr3.3:60081669-60081688 | MS.gene63320:intron | 35.0% |
!!! | AGACCTGATTTTTTTGCTTG+TGG | + | chr3.3:60081270-60081289 | None:intergenic | 35.0% |
!!! | AGGGTTTTAAATAGAGGTTG+CGG | - | chr3.3:60082103-60082122 | MS.gene63320:CDS | 35.0% |
AAAAAGGTCAGAACAATGGG+AGG | - | chr3.3:60082899-60082918 | MS.gene63320:CDS | 40.0% | |
AAAAGGTCAGAACAATGGGA+GGG | - | chr3.3:60082900-60082919 | MS.gene63320:CDS | 40.0% | |
AAGGCCTGTATCTTTAACTG+GGG | + | chr3.3:60084147-60084166 | None:intergenic | 40.0% | |
AATGAGCTAGTGAGTACACA+TGG | - | chr3.3:60083626-60083645 | MS.gene63320:intron | 40.0% | |
AATTGAACAATGCTGTGTGC+AGG | - | chr3.3:60082453-60082472 | MS.gene63320:CDS | 40.0% | |
ACAGAACAGACACCATCATA+AGG | + | chr3.3:60082710-60082729 | None:intergenic | 40.0% | |
ACATACTTCAGCATGACATG+AGG | - | chr3.3:60082990-60083009 | MS.gene63320:intron | 40.0% | |
ACTCTCAACAACCAACTTTG+AGG | - | chr3.3:60083336-60083355 | MS.gene63320:intron | 40.0% | |
AGTCTTACATTGCAATGGCA+CGG | + | chr3.3:60082083-60082102 | None:intergenic | 40.0% | |
AGTCTTGAAGATGATCTGCA+AGG | + | chr3.3:60081441-60081460 | None:intergenic | 40.0% | |
ATATCCATTGGTACAAACGG+TGG | - | chr3.3:60082755-60082774 | MS.gene63320:intron | 40.0% | |
CAAAGGCCTGTATCTTTAAC+TGG | + | chr3.3:60084149-60084168 | None:intergenic | 40.0% | |
CAATTGAACTCTGTTGACAC+TGG | - | chr3.3:60083482-60083501 | MS.gene63320:intron | 40.0% | |
CAATTGCAGACAATAGTGAC+TGG | - | chr3.3:60083972-60083991 | MS.gene63320:CDS | 40.0% | |
CAGTGTCAACAGAGTTCAAT+TGG | + | chr3.3:60083484-60083503 | None:intergenic | 40.0% | |
CAGTTAAAGATACAGGCCTT+TGG | - | chr3.3:60084147-60084166 | MS.gene63320:CDS | 40.0% | |
CATACTTCAGCATGACATGA+GGG | - | chr3.3:60082991-60083010 | MS.gene63320:intron | 40.0% | |
CTCAATGCGTATCTGTCAAA+TGG | + | chr3.3:60083070-60083089 | None:intergenic | 40.0% | |
GAAGAAGGAGAAGCAAAATC+AGG | + | chr3.3:60081555-60081574 | None:intergenic | 40.0% | |
GACTTTATTGGCAAGCTTGT+CGG | - | chr3.3:60083022-60083041 | MS.gene63320:intron | 40.0% | |
GCCATTGCAATGTAAGACTA+GGG | - | chr3.3:60082084-60082103 | MS.gene63320:CDS | 40.0% | |
GGTTAAAGAAGGGAGTAATG+AGG | - | chr3.3:60081494-60081513 | MS.gene63320:intron | 40.0% | |
GTCCGAGTAAGAATATGTTG+AGG | - | chr3.3:60081613-60081632 | MS.gene63320:CDS | 40.0% | |
TCAAACAAGAACTGGTGTCT+TGG | - | chr3.3:60082925-60082944 | MS.gene63320:CDS | 40.0% | |
TCGCAAAATACTCTAGCAGT+GGG | - | chr3.3:60082532-60082551 | MS.gene63320:CDS | 40.0% | |
TGCCATTGCAATGTAAGACT+AGG | - | chr3.3:60082083-60082102 | MS.gene63320:CDS | 40.0% | |
TGTCAACAGAGTTCAATTGG+TGG | + | chr3.3:60083481-60083500 | None:intergenic | 40.0% | |
TTATTGTTGACATCCCTGCT+GGG | + | chr3.3:60081299-60081318 | None:intergenic | 40.0% | |
TTGGCACTTGTGTTTATCTC+TGG | - | chr3.3:60082557-60082576 | MS.gene63320:CDS | 40.0% | |
! | CTACACTTGGAGGATTTTGA+TGG | + | chr3.3:60081405-60081424 | None:intergenic | 40.0% |
! | GACAGGTTTGTGGATTGAAA+TGG | - | chr3.3:60083152-60083171 | MS.gene63320:intron | 40.0% |
! | GTTTGGTAACAGATTTGGGA+TGG | - | chr3.3:60082866-60082885 | MS.gene63320:CDS | 40.0% |
!! | ACCCTAGTCTTACATTGCAA+TGG | + | chr3.3:60082088-60082107 | None:intergenic | 40.0% |
!! | GTGTTGATAGCGTTTCAAGA+CGG | + | chr3.3:60081329-60081348 | None:intergenic | 40.0% |
!! | TTGGAGGATTTTGATGGAGA+GGG | + | chr3.3:60081399-60081418 | None:intergenic | 40.0% |
!!! | AATTCTCGCATTTTGGCTTC+AGG | - | chr3.3:60082953-60082972 | MS.gene63320:CDS | 40.0% |
AAGGAAGCAATTGTGTCTGC+TGG | + | chr3.3:60083228-60083247 | None:intergenic | 45.0% | |
AATACTCTAGCAGTGGGACT+TGG | - | chr3.3:60082538-60082557 | MS.gene63320:CDS | 45.0% | |
AGACAATAGTGACTGGTGCT+GGG | - | chr3.3:60083979-60083998 | MS.gene63320:CDS | 45.0% | |
AGCTTGCCAATAAAGTCGCT+TGG | + | chr3.3:60083019-60083038 | None:intergenic | 45.0% | |
AGGGTTCCAAGCGACTTTAT+TGG | - | chr3.3:60083010-60083029 | MS.gene63320:intron | 45.0% | |
ATGGTGTCTGTTCTGTTCAG+TGG | - | chr3.3:60082714-60082733 | MS.gene63320:CDS | 45.0% | |
CCTTCAACTTGACAGGTTTG+TGG | - | chr3.3:60083142-60083161 | MS.gene63320:intron | 45.0% | |
CTCGCAAAATACTCTAGCAG+TGG | - | chr3.3:60082531-60082550 | MS.gene63320:CDS | 45.0% | |
CTGATCGGTGTATTCGTTTC+TGG | - | chr3.3:60083441-60083460 | MS.gene63320:intron | 45.0% | |
GAATCTGTCACTACACTTGG+AGG | + | chr3.3:60081415-60081434 | None:intergenic | 45.0% | |
GAGGGTTCCTTCATATCCAT+TGG | - | chr3.3:60082743-60082762 | MS.gene63320:CDS | 45.0% | |
GGTATAGTACTCTCATGCTG+TGG | + | chr3.3:60083827-60083846 | None:intergenic | 45.0% | |
GTGACTAAGCTGTGTGACTT+GGG | - | chr3.3:60082683-60082702 | MS.gene63320:CDS | 45.0% | |
GTTATTGTTGACATCCCTGC+TGG | + | chr3.3:60081300-60081319 | None:intergenic | 45.0% | |
TACAAACGGTGGTCAAGTTC+AGG | - | chr3.3:60082766-60082785 | MS.gene63320:intron | 45.0% | |
TACCTTGCAATGTCTCCTGA+TGG | - | chr3.3:60083843-60083862 | MS.gene63320:CDS | 45.0% | |
TGAAATGGTCCTGTGATGAC+CGG | - | chr3.3:60083167-60083186 | MS.gene63320:intron | 45.0% | |
TGCTCTGTAAGCCTCAAAGT+TGG | + | chr3.3:60083350-60083369 | None:intergenic | 45.0% | |
TGGACATTTACCTGACCATC+AGG | + | chr3.3:60083861-60083880 | None:intergenic | 45.0% | |
TTCTTACTCGGACTCACCAA+CGG | + | chr3.3:60081606-60081625 | None:intergenic | 45.0% | |
TTGACCACCGTTTGTACCAA+TGG | + | chr3.3:60082762-60082781 | None:intergenic | 45.0% | |
! | AACCAGTCACCGGTTAAAGA+AGG | - | chr3.3:60081483-60081502 | MS.gene63320:intron | 45.0% |
! | ACCAGTCACCGGTTAAAGAA+GGG | - | chr3.3:60081484-60081503 | MS.gene63320:intron | 45.0% |
! | AGGTTTAAGACGGAGAGTTG+TGG | - | chr3.3:60081633-60081652 | MS.gene63320:intron | 45.0% |
! | CACCTGTAAGCATTGCATTG+TGG | - | chr3.3:60084045-60084064 | MS.gene63320:CDS | 45.0% |
! | GGCATGGAATTCTCGCATTT+TGG | - | chr3.3:60082946-60082965 | MS.gene63320:CDS | 45.0% |
! | TGATAGCGTTTCAAGACGGA+GGG | + | chr3.3:60081325-60081344 | None:intergenic | 45.0% |
! | TGTGACTTGGGACCTTATGA+TGG | - | chr3.3:60082695-60082714 | MS.gene63320:CDS | 45.0% |
!! | CACTGCTAGAGTATTTTGCG+AGG | + | chr3.3:60082533-60082552 | None:intergenic | 45.0% |
!! | CCACAAACCTGTCAAGTTGA+AGG | + | chr3.3:60083145-60083164 | None:intergenic | 45.0% |
!! | CGTTTCTGGAACACGACAAA+TGG | - | chr3.3:60083455-60083474 | MS.gene63320:intron | 45.0% |
!! | CTTGGAGGATTTTGATGGAG+AGG | + | chr3.3:60081400-60081419 | None:intergenic | 45.0% |
!! | TTGATAGCGTTTCAAGACGG+AGG | + | chr3.3:60081326-60081345 | None:intergenic | 45.0% |
!! | TTGCAATGCCATCGATTCTC+AGG | + | chr3.3:60082183-60082202 | None:intergenic | 45.0% |
!!! | CATTTTGGCTTCAGGAAGCA+GGG | - | chr3.3:60082961-60082980 | MS.gene63320:intron | 45.0% |
AACCTTCTCGTATCTGGAGG+TGG | - | chr3.3:60083413-60083432 | MS.gene63320:intron | 50.0% | |
ACAATGCTGTGTGCAGGTTC+TGG | - | chr3.3:60082459-60082478 | MS.gene63320:CDS | 50.0% | |
ACGAGAAGGTTGCTCTGATG+AGG | + | chr3.3:60083404-60083423 | None:intergenic | 50.0% | |
ACTTTCCTAGGAGGCTTAGG+AGG | + | chr3.3:60081729-60081748 | None:intergenic | 50.0% | |
AGCAACCTTCTCGTATCTGG+AGG | - | chr3.3:60083410-60083429 | MS.gene63320:intron | 50.0% | |
CAACCTGCAGGAGAAGAAGA+AGG | + | chr3.3:60081570-60081589 | None:intergenic | 50.0% | |
CAAGAACTGGTGTCTTGGCA+TGG | - | chr3.3:60082930-60082949 | MS.gene63320:CDS | 50.0% | |
CAGACAATAGTGACTGGTGC+TGG | - | chr3.3:60083978-60083997 | MS.gene63320:CDS | 50.0% | |
CAGAGCAACCTTCTCGTATC+TGG | - | chr3.3:60083407-60083426 | MS.gene63320:intron | 50.0% | |
CAGGCCCCAGTTAAAGATAC+AGG | - | chr3.3:60084140-60084159 | MS.gene63320:CDS | 50.0% | |
CTGATGAGGTGACCAAGCAA+TGG | + | chr3.3:60083390-60083409 | None:intergenic | 50.0% | |
CTGCTGTGAAAGCCATTGCT+TGG | - | chr3.3:60083375-60083394 | MS.gene63320:intron | 50.0% | |
CTGTTCTGTTCAGTGGACCA+AGG | - | chr3.3:60082721-60082740 | MS.gene63320:CDS | 50.0% | |
GAAATGGTCCTGTGATGACC+GGG | - | chr3.3:60083168-60083187 | MS.gene63320:intron | 50.0% | |
GACCATCAGGAGACATTGCA+AGG | + | chr3.3:60083848-60083867 | None:intergenic | 50.0% | |
GATACAGGCCTTTGGTCACT+AGG | - | chr3.3:60084155-60084174 | MS.gene63320:CDS | 50.0% | |
GGAACTTTCCTAGGAGGCTT+AGG | + | chr3.3:60081732-60081751 | None:intergenic | 50.0% | |
GGATATGAAGGAACCCTCCT+TGG | + | chr3.3:60082741-60082760 | None:intergenic | 50.0% | |
GGCCACAATGCAATGCTTAC+AGG | + | chr3.3:60084050-60084069 | None:intergenic | 50.0% | |
GGCGAAGAAAAAGGCGAAGA+AGG | + | chr3.3:60081660-60081679 | None:intergenic | 50.0% | |
GGTGACTAAGCTGTGTGACT+TGG | - | chr3.3:60082682-60082701 | MS.gene63320:CDS | 50.0% | |
GGTGTCTTGGGAACTTTCCT+AGG | + | chr3.3:60081741-60081760 | None:intergenic | 50.0% | |
GTCTTGGGAACTTTCCTAGG+AGG | + | chr3.3:60081738-60081757 | None:intergenic | 50.0% | |
TACCACCAGAAGCAAGTTCC+CGG | + | chr3.3:60083189-60083208 | None:intergenic | 50.0% | |
TCCCTTCTTTAACCGGTGAC+TGG | + | chr3.3:60081488-60081507 | None:intergenic | 50.0% | |
TCTCCTTCTTCTTCTCCTGC+AGG | - | chr3.3:60081564-60081583 | MS.gene63320:intron | 50.0% | |
TCTGTTCAGTGGACCAAGGA+GGG | - | chr3.3:60082725-60082744 | MS.gene63320:CDS | 50.0% | |
TCTTCTTCTCCTGCAGGTTG+TGG | - | chr3.3:60081570-60081589 | MS.gene63320:intron | 50.0% | |
TGCAATGTCTCCTGATGGTC+AGG | - | chr3.3:60083848-60083867 | MS.gene63320:CDS | 50.0% | |
TGCAGGTGTGTAACCTTGCT+TGG | - | chr3.3:60083591-60083610 | MS.gene63320:intron | 50.0% | |
TTCCACCTCCAGATACGAGA+AGG | + | chr3.3:60083418-60083437 | None:intergenic | 50.0% | |
TTCTGTTCAGTGGACCAAGG+AGG | - | chr3.3:60082724-60082743 | MS.gene63320:CDS | 50.0% | |
! | GACAATAGTGACTGGTGCTG+GGG | - | chr3.3:60083980-60083999 | MS.gene63320:CDS | 50.0% |
!! | ATGGAGAGGGTGTTGATGAG+AGG | + | chr3.3:60081386-60081405 | None:intergenic | 50.0% |
!! | CATCGATTCTCAGGTCGCAT+CGG | + | chr3.3:60082174-60082193 | None:intergenic | 50.0% |
!! | GGAGGGCATCAAACAAGAAC+TGG | - | chr3.3:60082917-60082936 | MS.gene63320:CDS | 50.0% |
!!! | GCATTTTGGCTTCAGGAAGC+AGG | - | chr3.3:60082960-60082979 | MS.gene63320:CDS | 50.0% |
AGCAAGTTCCCGGTCATCAC+AGG | + | chr3.3:60083179-60083198 | None:intergenic | 55.0% | |
AGTTCCCAAGACACCCCACA+AGG | - | chr3.3:60081746-60081765 | MS.gene63320:intron | 55.0% | |
CAGGTCTAAACCTCCCAGCA+GGG | - | chr3.3:60081283-60081302 | MS.gene63320:CDS | 55.0% | |
CGATGCGACCTGAGAATCGA+TGG | - | chr3.3:60082172-60082191 | MS.gene63320:intron | 55.0% | |
CTACTCCTCCTAAGCCTCCT+AGG | - | chr3.3:60081721-60081740 | MS.gene63320:intron | 55.0% | |
CTCTGTTGACACTGGAAGCC+AGG | - | chr3.3:60083490-60083509 | MS.gene63320:intron | 55.0% | |
CTGGAGGTGGAACTGCTGAT+CGG | - | chr3.3:60083426-60083445 | MS.gene63320:intron | 55.0% | |
GAACCAACACCACAACCTGC+AGG | + | chr3.3:60081582-60081601 | None:intergenic | 55.0% | |
TAGCGTTTCAAGACGGAGGG+AGG | + | chr3.3:60081322-60081341 | None:intergenic | 55.0% | |
TCAGGTCTAAACCTCCCAGC+AGG | - | chr3.3:60081282-60081301 | MS.gene63320:CDS | 55.0% | |
TCTCCTGCAGGTTGTGGTGT+TGG | - | chr3.3:60081576-60081595 | MS.gene63320:intron | 55.0% | |
TGGCTTCAGGAAGCAGGGAT+AGG | - | chr3.3:60082966-60082985 | MS.gene63320:intron | 55.0% | |
TTGTTGACATCCCTGCTGGG+AGG | + | chr3.3:60081296-60081315 | None:intergenic | 55.0% | |
! | ACTTGCCTTGTGGGGTGTCT+TGG | + | chr3.3:60081754-60081773 | None:intergenic | 55.0% |
! | CTTGCCTTGTGGGGTGTCTT+GGG | + | chr3.3:60081753-60081772 | None:intergenic | 55.0% |
! | GAGAGGTTTGAGATCGCACG+AGG | + | chr3.3:60081369-60081388 | None:intergenic | 55.0% |
! | GATGACCGGGAACTTGCTTC+TGG | - | chr3.3:60083181-60083200 | MS.gene63320:intron | 55.0% |
! | GGGATGAGACTCTGCGGTTT+TGG | - | chr3.3:60084000-60084019 | MS.gene63320:CDS | 55.0% |
!! | TTGTGGTGTTGGTTCGCCGT+TGG | - | chr3.3:60081587-60081606 | MS.gene63320:CDS | 55.0% |
ACGAGGCGAAGCGGAAGAAG+GGG | + | chr3.3:60081352-60081371 | None:intergenic | 60.0% | |
CACGAGGCGAAGCGGAAGAA+GGG | + | chr3.3:60081353-60081372 | None:intergenic | 60.0% | |
GCTTGTCGGCCACAAATCCG+AGG | - | chr3.3:60083036-60083055 | MS.gene63320:intron | 60.0% | |
GTGCTGGGGATGAGACTCTG+CGG | - | chr3.3:60083994-60084013 | MS.gene63320:CDS | 60.0% | |
TGAGATCGCACGAGGCGAAG+CGG | + | chr3.3:60081361-60081380 | None:intergenic | 60.0% | |
! | GACCGGGAACTTGCTTCTGG+TGG | - | chr3.3:60083184-60083203 | MS.gene63320:intron | 60.0% |
CGAGGCGAAGCGGAAGAAGG+GGG | + | chr3.3:60081351-60081370 | None:intergenic | 65.0% | |
GCACGAGGCGAAGCGGAAGA+AGG | + | chr3.3:60081354-60081373 | None:intergenic | 65.0% | |
GGGTGCGGCCTAGTGACCAA+AGG | + | chr3.3:60084166-60084185 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 60081258 | 60084196 | 60081258 | ID=MS.gene63320 |
chr3.3 | mRNA | 60081258 | 60084196 | 60081258 | ID=MS.gene63320.t1;Parent=MS.gene63320 |
chr3.3 | exon | 60083683 | 60084196 | 60083683 | ID=MS.gene63320.t1.exon1;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60083683 | 60084196 | 60083683 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60083527 | 60083533 | 60083527 | ID=MS.gene63320.t1.exon2;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60083527 | 60083533 | 60083527 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60083093 | 60083141 | 60083093 | ID=MS.gene63320.t1.exon3;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60083093 | 60083141 | 60083093 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60082857 | 60082979 | 60082857 | ID=MS.gene63320.t1.exon4;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60082857 | 60082979 | 60082857 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60082667 | 60082771 | 60082667 | ID=MS.gene63320.t1.exon5;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60082667 | 60082771 | 60082667 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60082397 | 60082576 | 60082397 | ID=MS.gene63320.t1.exon6;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60082397 | 60082576 | 60082397 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60082235 | 60082297 | 60082235 | ID=MS.gene63320.t1.exon7;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60082235 | 60082297 | 60082235 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60081943 | 60082137 | 60081943 | ID=MS.gene63320.t1.exon8;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60081943 | 60082137 | 60081943 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60081757 | 60081858 | 60081757 | ID=MS.gene63320.t1.exon9;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60081757 | 60081858 | 60081757 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60081585 | 60081647 | 60081585 | ID=MS.gene63320.t1.exon10;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60081585 | 60081647 | 60081585 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60081405 | 60081473 | 60081405 | ID=MS.gene63320.t1.exon11;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60081405 | 60081473 | 60081405 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
chr3.3 | exon | 60081258 | 60081311 | 60081258 | ID=MS.gene63320.t1.exon12;Parent=MS.gene63320.t1 |
chr3.3 | CDS | 60081258 | 60081311 | 60081258 | ID=cds.MS.gene63320.t1;Parent=MS.gene63320.t1 |
Gene Sequence |
Protein sequence |