Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50484.t1 | XP_013449736.1 | 97.7 | 697 | 16 | 0 | 1 | 697 | 1 | 697 | 1.30E-255 | 892.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50484.t1 | B9DHT4 | 69.9 | 682 | 195 | 4 | 11 | 684 | 20 | 699 | 4.7e-134 | 479.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50484.t1 | A0A072U240 | 97.7 | 697 | 16 | 0 | 1 | 697 | 1 | 697 | 9.0e-256 | 892.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene50484.t1 | TR | TRAF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049397 | MS.gene50484 | 0.826581 | 2.51E-54 | -1.69E-46 |
MS.gene049596 | MS.gene50484 | 0.814958 | 1.18E-51 | -1.69E-46 |
MS.gene049622 | MS.gene50484 | 0.833008 | 6.82E-56 | -1.69E-46 |
MS.gene049660 | MS.gene50484 | 0.818746 | 1.67E-52 | -1.69E-46 |
MS.gene04985 | MS.gene50484 | 0.808985 | 2.37E-50 | -1.69E-46 |
MS.gene049989 | MS.gene50484 | 0.887594 | 1.24E-72 | -1.69E-46 |
MS.gene050297 | MS.gene50484 | 0.850222 | 1.95E-60 | -1.69E-46 |
MS.gene05054 | MS.gene50484 | 0.833337 | 5.65E-56 | -1.69E-46 |
MS.gene050648 | MS.gene50484 | 0.816213 | 6.21E-52 | -1.69E-46 |
MS.gene051094 | MS.gene50484 | 0.816016 | 6.87E-52 | -1.69E-46 |
MS.gene05124 | MS.gene50484 | 0.82629 | 2.94E-54 | -1.69E-46 |
MS.gene051263 | MS.gene50484 | 0.813508 | 2.47E-51 | -1.69E-46 |
MS.gene051423 | MS.gene50484 | 0.817811 | 2.72E-52 | -1.69E-46 |
MS.gene051629 | MS.gene50484 | 0.848461 | 6.04E-60 | -1.69E-46 |
MS.gene051742 | MS.gene50484 | 0.813101 | 3.03E-51 | -1.69E-46 |
MS.gene051816 | MS.gene50484 | 0.870856 | 1.06E-66 | -1.69E-46 |
MS.gene051896 | MS.gene50484 | 0.801456 | 8.93E-49 | -1.69E-46 |
MS.gene051914 | MS.gene50484 | 0.812088 | 5.05E-51 | -1.69E-46 |
MS.gene051955 | MS.gene50484 | 0.859717 | 3.41E-63 | -1.69E-46 |
MS.gene052143 | MS.gene50484 | 0.832901 | 7.26E-56 | -1.69E-46 |
MS.gene052308 | MS.gene50484 | 0.857265 | 1.84E-62 | -1.69E-46 |
MS.gene052367 | MS.gene50484 | 0.881301 | 2.69E-70 | -1.69E-46 |
MS.gene053173 | MS.gene50484 | 0.869216 | 3.66E-66 | -1.69E-46 |
MS.gene053348 | MS.gene50484 | 0.890141 | 1.29E-73 | -1.69E-46 |
MS.gene053416 | MS.gene50484 | 0.874679 | 5.59E-68 | -1.69E-46 |
MS.gene053417 | MS.gene50484 | 0.872154 | 3.96E-67 | -1.69E-46 |
MS.gene05369 | MS.gene50484 | 0.819846 | 9.37E-53 | -1.69E-46 |
MS.gene053929 | MS.gene50484 | 0.817243 | 3.65E-52 | -1.69E-46 |
MS.gene054551 | MS.gene50484 | 0.884484 | 1.84E-71 | -1.69E-46 |
MS.gene054552 | MS.gene50484 | 0.859237 | 4.75E-63 | -1.69E-46 |
MS.gene054593 | MS.gene50484 | 0.876646 | 1.18E-68 | -1.69E-46 |
MS.gene054633 | MS.gene50484 | 0.82012 | 8.11E-53 | -1.69E-46 |
MS.gene054662 | MS.gene50484 | 0.801926 | 7.15E-49 | -1.69E-46 |
MS.gene054885 | MS.gene50484 | 0.829132 | 6.11E-55 | -1.69E-46 |
MS.gene055308 | MS.gene50484 | 0.879304 | 1.39E-69 | -1.69E-46 |
MS.gene055411 | MS.gene50484 | 0.817459 | 3.26E-52 | -1.69E-46 |
MS.gene055578 | MS.gene50484 | 0.856387 | 3.33E-62 | -1.69E-46 |
MS.gene055579 | MS.gene50484 | 0.82693 | 2.07E-54 | -1.69E-46 |
MS.gene055957 | MS.gene50484 | 0.890711 | 7.69E-74 | -1.69E-46 |
MS.gene056041 | MS.gene50484 | 0.912873 | 1.18E-83 | -1.69E-46 |
MS.gene056042 | MS.gene50484 | 0.85786 | 1.22E-62 | -1.69E-46 |
MS.gene05640 | MS.gene50484 | 0.884543 | 1.75E-71 | -1.69E-46 |
MS.gene056526 | MS.gene50484 | 0.881747 | 1.86E-70 | -1.69E-46 |
MS.gene056528 | MS.gene50484 | 0.853528 | 2.25E-61 | -1.69E-46 |
MS.gene05652 | MS.gene50484 | 0.81344 | 2.56E-51 | -1.69E-46 |
MS.gene057358 | MS.gene50484 | 0.809855 | 1.54E-50 | -1.69E-46 |
MS.gene057458 | MS.gene50484 | 0.870917 | 1.02E-66 | -1.69E-46 |
MS.gene058013 | MS.gene50484 | 0.820701 | 5.97E-53 | -1.69E-46 |
MS.gene058128 | MS.gene50484 | 0.842914 | 1.93E-58 | -1.69E-46 |
MS.gene058196 | MS.gene50484 | 0.851327 | 9.54E-61 | -1.69E-46 |
MS.gene058197 | MS.gene50484 | 0.838947 | 2.12E-57 | -1.69E-46 |
MS.gene058198 | MS.gene50484 | 0.845884 | 3.07E-59 | -1.69E-46 |
MS.gene058478 | MS.gene50484 | 0.807203 | 5.67E-50 | -1.69E-46 |
MS.gene058818 | MS.gene50484 | 0.817072 | 3.99E-52 | -1.69E-46 |
MS.gene058827 | MS.gene50484 | 0.849513 | 3.08E-60 | -1.69E-46 |
MS.gene058828 | MS.gene50484 | 0.822442 | 2.36E-53 | -1.69E-46 |
MS.gene058849 | MS.gene50484 | 0.807631 | 4.60E-50 | -1.69E-46 |
MS.gene058853 | MS.gene50484 | 0.85528 | 7.02E-62 | -1.69E-46 |
MS.gene059300 | MS.gene50484 | 0.864772 | 9.56E-65 | -1.69E-46 |
MS.gene059553 | MS.gene50484 | 0.874285 | 7.61E-68 | -1.69E-46 |
MS.gene060473 | MS.gene50484 | 0.901029 | 4.05E-78 | -1.69E-46 |
MS.gene060492 | MS.gene50484 | 0.800869 | 1.18E-48 | -1.69E-46 |
MS.gene060565 | MS.gene50484 | 0.900193 | 9.36E-78 | -1.69E-46 |
MS.gene06057 | MS.gene50484 | 0.836627 | 8.37E-57 | -1.69E-46 |
MS.gene06064 | MS.gene50484 | 0.814389 | 1.58E-51 | -1.69E-46 |
MS.gene06093 | MS.gene50484 | 0.880281 | 6.25E-70 | -1.69E-46 |
MS.gene061099 | MS.gene50484 | 0.883884 | 3.08E-71 | -1.69E-46 |
MS.gene061260 | MS.gene50484 | 0.90758 | 4.35E-81 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50484.t1 | MTR_7g094910 | 98.278 | 697 | 12 | 0 | 1 | 697 | 1 | 697 | 0.0 | 1408 |
MS.gene50484.t1 | MTR_7g094900 | 98.397 | 624 | 10 | 0 | 74 | 697 | 93 | 716 | 0.0 | 1268 |
MS.gene50484.t1 | MTR_7g094910 | 98.712 | 621 | 8 | 0 | 1 | 621 | 1 | 621 | 0.0 | 1253 |
MS.gene50484.t1 | MTR_5g005940 | 66.462 | 653 | 214 | 2 | 36 | 684 | 43 | 694 | 0.0 | 873 |
MS.gene50484.t1 | MTR_1g104870 | 63.543 | 683 | 239 | 5 | 11 | 685 | 18 | 698 | 0.0 | 862 |
MS.gene50484.t1 | MTR_5g005940 | 68.421 | 551 | 169 | 2 | 36 | 582 | 43 | 592 | 0.0 | 749 |
MS.gene50484.t1 | MTR_3g008350 | 26.022 | 538 | 295 | 22 | 7 | 507 | 3 | 474 | 5.18e-17 | 85.1 |
MS.gene50484.t1 | MTR_1g018180 | 27.511 | 229 | 158 | 2 | 269 | 489 | 61 | 289 | 1.14e-16 | 82.4 |
MS.gene50484.t1 | MTR_1g012360 | 23.446 | 354 | 244 | 9 | 179 | 513 | 157 | 502 | 1.23e-16 | 84.0 |
MS.gene50484.t1 | MTR_7g094490 | 27.389 | 157 | 97 | 3 | 511 | 651 | 189 | 344 | 4.29e-14 | 75.5 |
MS.gene50484.t1 | MTR_1g012360 | 22.992 | 361 | 249 | 9 | 123 | 466 | 104 | 452 | 4.71e-14 | 75.5 |
MS.gene50484.t1 | MTR_3g466220 | 25.952 | 289 | 198 | 6 | 118 | 393 | 452 | 737 | 4.95e-14 | 76.3 |
MS.gene50484.t1 | MTR_3g466220 | 29.741 | 232 | 151 | 4 | 255 | 475 | 515 | 745 | 1.74e-13 | 74.7 |
MS.gene50484.t1 | MTR_3g466220 | 26.027 | 292 | 200 | 6 | 118 | 396 | 473 | 761 | 5.03e-14 | 76.3 |
MS.gene50484.t1 | MTR_3g466220 | 29.741 | 232 | 151 | 4 | 255 | 475 | 536 | 766 | 1.86e-13 | 74.3 |
MS.gene50484.t1 | MTR_5g087500 | 28.902 | 173 | 99 | 5 | 511 | 664 | 183 | 350 | 1.24e-13 | 73.2 |
MS.gene50484.t1 | MTR_1g072650 | 28.049 | 164 | 98 | 4 | 506 | 653 | 191 | 350 | 1.68e-13 | 73.6 |
MS.gene50484.t1 | MTR_1g012360 | 23.529 | 306 | 210 | 7 | 179 | 468 | 157 | 454 | 2.05e-13 | 73.9 |
MS.gene50484.t1 | MTR_5g087500 | 27.473 | 182 | 101 | 6 | 511 | 663 | 183 | 362 | 3.06e-13 | 72.8 |
MS.gene50484.t1 | MTR_3g103050 | 25.221 | 226 | 157 | 3 | 276 | 489 | 58 | 283 | 3.71e-13 | 71.6 |
MS.gene50484.t1 | MTR_3g088560 | 27.778 | 162 | 114 | 2 | 526 | 684 | 39 | 200 | 4.71e-13 | 68.9 |
MS.gene50484.t1 | MTR_5g087500 | 28.931 | 159 | 92 | 4 | 511 | 650 | 183 | 339 | 6.71e-13 | 71.2 |
MS.gene50484.t1 | MTR_3g088660 | 26.000 | 150 | 107 | 1 | 523 | 668 | 77 | 226 | 7.06e-13 | 69.7 |
MS.gene50484.t1 | MTR_4g063800 | 29.412 | 204 | 140 | 3 | 185 | 387 | 353 | 553 | 1.45e-12 | 71.2 |
MS.gene50484.t1 | MTR_3g019360 | 25.532 | 329 | 217 | 10 | 207 | 522 | 232 | 545 | 4.08e-12 | 70.1 |
MS.gene50484.t1 | MTR_3g088560 | 28.659 | 164 | 110 | 3 | 526 | 684 | 91 | 252 | 4.52e-12 | 67.4 |
MS.gene50484.t1 | MTR_3g088560 | 30.233 | 129 | 89 | 1 | 526 | 653 | 106 | 234 | 6.48e-12 | 67.0 |
MS.gene50484.t1 | MTR_3g069000 | 27.957 | 186 | 115 | 4 | 498 | 669 | 32 | 212 | 6.81e-12 | 67.4 |
MS.gene50484.t1 | MTR_3g088560 | 31.298 | 131 | 85 | 2 | 526 | 653 | 161 | 289 | 1.27e-11 | 67.0 |
MS.gene50484.t1 | MTR_5g096700 | 28.462 | 130 | 91 | 2 | 526 | 653 | 106 | 235 | 1.80e-11 | 65.9 |
MS.gene50484.t1 | MTR_4g485520 | 28.111 | 217 | 152 | 3 | 183 | 398 | 371 | 584 | 1.83e-11 | 67.8 |
MS.gene50484.t1 | MTR_4g485520 | 28.111 | 217 | 152 | 3 | 183 | 398 | 203 | 416 | 3.06e-11 | 66.6 |
MS.gene50484.t1 | MTR_7g007780 | 27.049 | 244 | 167 | 5 | 149 | 383 | 435 | 676 | 4.08e-11 | 66.6 |
MS.gene50484.t1 | MTR_5g096700 | 28.462 | 130 | 91 | 2 | 526 | 653 | 165 | 294 | 4.35e-11 | 65.5 |
MS.gene50484.t1 | MTR_4g133040 | 25.566 | 309 | 205 | 10 | 76 | 379 | 85 | 373 | 8.27e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50484.t1 | AT5G19330 | 65.103 | 682 | 228 | 4 | 11 | 684 | 20 | 699 | 0.0 | 874 |
MS.gene50484.t1 | AT5G13060 | 56.628 | 694 | 285 | 7 | 4 | 686 | 40 | 728 | 0.0 | 781 |
MS.gene50484.t1 | AT5G19330 | 60.323 | 620 | 186 | 8 | 11 | 621 | 20 | 588 | 0.0 | 674 |
MS.gene50484.t1 | AT5G58680 | 26.852 | 216 | 150 | 2 | 275 | 482 | 69 | 284 | 2.70e-16 | 81.6 |
MS.gene50484.t1 | AT3G06190 | 30.380 | 158 | 95 | 3 | 509 | 651 | 182 | 339 | 5.70e-16 | 80.5 |
MS.gene50484.t1 | AT3G06190 | 30.380 | 158 | 95 | 3 | 509 | 651 | 182 | 339 | 6.68e-16 | 80.9 |
MS.gene50484.t1 | AT3G01400 | 27.570 | 214 | 147 | 2 | 277 | 482 | 73 | 286 | 8.92e-16 | 80.1 |
MS.gene50484.t1 | AT3G01400 | 31.034 | 145 | 99 | 1 | 252 | 396 | 90 | 233 | 9.01e-11 | 64.7 |
MS.gene50484.t1 | AT3G03740 | 33.333 | 147 | 81 | 2 | 520 | 650 | 210 | 355 | 5.38e-15 | 78.6 |
MS.gene50484.t1 | AT3G46510 | 26.812 | 276 | 167 | 5 | 192 | 467 | 361 | 601 | 6.34e-14 | 75.9 |
MS.gene50484.t1 | AT5G19000 | 28.481 | 158 | 98 | 2 | 509 | 651 | 183 | 340 | 3.06e-13 | 72.8 |
MS.gene50484.t1 | AT5G19000 | 28.481 | 158 | 98 | 2 | 509 | 651 | 183 | 340 | 3.06e-13 | 72.8 |
MS.gene50484.t1 | AT2G23140 | 27.668 | 253 | 169 | 8 | 249 | 489 | 523 | 773 | 1.20e-12 | 72.0 |
MS.gene50484.t1 | AT2G23140 | 25.284 | 352 | 225 | 11 | 1 | 345 | 507 | 827 | 4.61e-11 | 66.6 |
MS.gene50484.t1 | AT2G23140 | 27.668 | 253 | 169 | 8 | 249 | 489 | 520 | 770 | 1.29e-12 | 71.6 |
MS.gene50484.t1 | AT2G23140 | 25.284 | 352 | 225 | 11 | 1 | 345 | 504 | 824 | 4.72e-11 | 66.6 |
MS.gene50484.t1 | AT2G23140 | 27.668 | 253 | 169 | 8 | 249 | 489 | 520 | 770 | 1.29e-12 | 71.6 |
MS.gene50484.t1 | AT2G23140 | 25.284 | 352 | 225 | 11 | 1 | 345 | 504 | 824 | 4.72e-11 | 66.6 |
MS.gene50484.t1 | AT5G67340 | 27.230 | 213 | 153 | 2 | 181 | 393 | 419 | 629 | 1.63e-12 | 71.2 |
MS.gene50484.t1 | AT5G67340 | 27.230 | 213 | 153 | 2 | 181 | 393 | 419 | 629 | 1.63e-12 | 71.2 |
MS.gene50484.t1 | AT3G43700 | 29.630 | 162 | 92 | 3 | 511 | 651 | 187 | 347 | 1.71e-12 | 70.1 |
MS.gene50484.t1 | AT3G43700 | 29.630 | 162 | 92 | 3 | 511 | 651 | 187 | 347 | 1.72e-12 | 70.1 |
MS.gene50484.t1 | AT3G43700 | 29.630 | 162 | 92 | 3 | 511 | 651 | 187 | 347 | 2.33e-12 | 70.1 |
MS.gene50484.t1 | AT2G23140 | 27.273 | 253 | 170 | 8 | 249 | 489 | 331 | 581 | 2.74e-12 | 70.5 |
MS.gene50484.t1 | AT2G23140 | 25.284 | 352 | 225 | 11 | 1 | 345 | 315 | 635 | 6.76e-11 | 66.2 |
MS.gene50484.t1 | AT2G23140 | 27.273 | 253 | 170 | 8 | 249 | 489 | 331 | 581 | 2.74e-12 | 70.5 |
MS.gene50484.t1 | AT2G23140 | 25.284 | 352 | 225 | 11 | 1 | 345 | 315 | 635 | 6.76e-11 | 66.2 |
MS.gene50484.t1 | AT1G71020 | 28.472 | 288 | 180 | 7 | 33 | 317 | 187 | 451 | 3.44e-12 | 69.7 |
MS.gene50484.t1 | AT1G71020 | 28.472 | 288 | 180 | 7 | 33 | 317 | 335 | 599 | 4.04e-12 | 70.1 |
MS.gene50484.t1 | AT5G50900 | 26.935 | 323 | 214 | 9 | 58 | 377 | 160 | 463 | 2.12e-11 | 67.4 |
MS.gene50484.t1 | AT1G23030 | 28.037 | 214 | 149 | 4 | 185 | 396 | 333 | 543 | 2.51e-11 | 67.4 |
MS.gene50484.t1 | AT4G02150 | 23.793 | 290 | 196 | 7 | 76 | 359 | 154 | 424 | 4.07e-11 | 66.6 |
MS.gene50484.t1 | AT4G08455 | 27.778 | 126 | 91 | 0 | 539 | 664 | 109 | 234 | 7.46e-11 | 63.9 |
MS.gene50484.t1 | AT1G02690 | 25.168 | 298 | 178 | 7 | 78 | 359 | 157 | 425 | 7.91e-11 | 65.5 |
Find 134 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGACATCCCATTTAATATT+TGG | 0.116816 | 7.3:-16169190 | None:intergenic |
TCCTGTTCTGGTGGAGATTC+TGG | 0.134771 | 7.3:+16159845 | MS.gene50484:CDS |
GATATTGATCTGCAGCTTTA+AGG | 0.182319 | 7.3:-16169367 | None:intergenic |
TAGAGATTCCAAATATTAAA+TGG | 0.203610 | 7.3:+16169182 | MS.gene50484:CDS |
AGACTTAAGCATCTCAATTA+AGG | 0.205405 | 7.3:-16167210 | None:intergenic |
TTGAGAAATTACAGGGCTTT+TGG | 0.248837 | 7.3:-16166191 | None:intergenic |
AGAACCTCTCTCTTAATTTC+TGG | 0.255821 | 7.3:-16166784 | None:intergenic |
GACGAAAACGGTACCGTCTT+TGG | 0.269861 | 7.3:-16159711 | None:intergenic |
AAGCGTCACCTTTCTGCTTT+GGG | 0.276593 | 7.3:-16168259 | None:intergenic |
TTGCGGTGCTGTTCCTGTTC+TGG | 0.279776 | 7.3:+16159833 | MS.gene50484:CDS |
GAAGCGTCACCTTTCTGCTT+TGG | 0.280164 | 7.3:-16168260 | None:intergenic |
CAATGTTGCGGTTATAATTA+AGG | 0.290628 | 7.3:+16167618 | MS.gene50484:CDS |
ACTATATTTATTGACAATAA+TGG | 0.304416 | 7.3:+16168112 | MS.gene50484:CDS |
TCTGCTTTGGGTTTGTAGAT+TGG | 0.317742 | 7.3:-16168247 | None:intergenic |
AGGGGTTTATAGCCCCTCTT+TGG | 0.318508 | 7.3:-16167190 | None:intergenic |
TCAGATTATCAAATTGCTTC+AGG | 0.329746 | 7.3:-16169608 | None:intergenic |
GGTACCGTCTTTGGCGAATT+CGG | 0.339972 | 7.3:-16159702 | None:intergenic |
GTGTTGTATGTAGGTTTACT+TGG | 0.350373 | 7.3:+16168563 | MS.gene50484:intron |
GTCTTCTGATTTACAGCTTA+GGG | 0.356148 | 7.3:+16167229 | MS.gene50484:CDS |
GTGTAACAAAGACGTTAAAA+AGG | 0.367744 | 7.3:+16167871 | MS.gene50484:CDS |
TCTTCTTACTCACCCTCATT+TGG | 0.378986 | 7.3:+16169789 | MS.gene50484:CDS |
AAGATCTAAACGACGAGGTT+TGG | 0.379087 | 7.3:-16159582 | None:intergenic |
GCAGATCAATATCTTCTTGA+TGG | 0.379447 | 7.3:+16169377 | MS.gene50484:CDS |
AATTAAGAGAGAGGTTCTTC+TGG | 0.391924 | 7.3:+16166789 | MS.gene50484:CDS |
AACAGTGCTTGAGAAATTAC+AGG | 0.395439 | 7.3:-16166199 | None:intergenic |
GACTTAAGCATCTCAATTAA+GGG | 0.403091 | 7.3:-16167209 | None:intergenic |
CACCTCAGTAAGCAAATAAC+AGG | 0.405029 | 7.3:-16166826 | None:intergenic |
AGTCTTCTGATTTACAGCTT+AGG | 0.411735 | 7.3:+16167228 | MS.gene50484:CDS |
TGGAGCAGTAGATATTGATT+TGG | 0.413854 | 7.3:+16169328 | MS.gene50484:CDS |
TCCAGAATCTCCACCAGAAC+AGG | 0.415975 | 7.3:-16159846 | None:intergenic |
TGCACTTGGGAGGTTGGCAC+AGG | 0.420601 | 7.3:+16167265 | MS.gene50484:CDS |
GATGTCACATTCATAGTTGA+AGG | 0.425234 | 7.3:+16168618 | MS.gene50484:CDS |
CATTTCGTGCAATGTTTGAT+GGG | 0.429668 | 7.3:+16168796 | MS.gene50484:CDS |
CGATTCTTATAAGTATGATA+TGG | 0.432884 | 7.3:+16159890 | MS.gene50484:CDS |
GATCTTCTTGACACAAAGAA+TGG | 0.434414 | 7.3:+16167432 | MS.gene50484:CDS |
AAGAGAGAGGTTCTTCTGGC+TGG | 0.435007 | 7.3:+16166793 | MS.gene50484:CDS |
GAGTATGCACGCATATCTTA+AGG | 0.435506 | 7.3:-16169580 | None:intergenic |
GAATGATAGCTCCTGCTGTC+TGG | 0.436068 | 7.3:+16167004 | MS.gene50484:intron |
ACATTTCGTGCAATGTTTGA+TGG | 0.436720 | 7.3:+16168795 | MS.gene50484:CDS |
TCTTATGCGCACTGGGGAAA+AGG | 0.447076 | 7.3:+16168030 | MS.gene50484:CDS |
GGGGTTTATAGCCCCTCTTT+GGG | 0.459508 | 7.3:-16167189 | None:intergenic |
GGTTGGCGTGATTGGAAATC+TGG | 0.461285 | 7.3:+16166750 | MS.gene50484:intron |
GAGAAGAATTTGTGAATGTC+TGG | 0.467367 | 7.3:-16169763 | None:intergenic |
CCAACTCTTGTACTAATGCT+TGG | 0.468473 | 7.3:+16166595 | MS.gene50484:CDS |
ATGTTATATCTTATGCGCAC+TGG | 0.469956 | 7.3:+16168022 | MS.gene50484:CDS |
CTTTAACAACTCTACGAGAT+AGG | 0.471201 | 7.3:-16166164 | None:intergenic |
TGTTATATCTTATGCGCACT+GGG | 0.471608 | 7.3:+16168023 | MS.gene50484:CDS |
AGAGAGAGGTTCTTCTGGCT+GGG | 0.476825 | 7.3:+16166794 | MS.gene50484:CDS |
AGAGATTCCAAATATTAAAT+GGG | 0.477674 | 7.3:+16169183 | MS.gene50484:CDS |
AATGTGACATCAGAAAGTTT+AGG | 0.478183 | 7.3:-16168606 | None:intergenic |
TAACATAACATACCATGGTT+TGG | 0.478501 | 7.3:-16169634 | None:intergenic |
CATATCATACTTATAAGAAT+CGG | 0.486085 | 7.3:-16159889 | None:intergenic |
AAGGAGTGTGCGTTCATCCT+TGG | 0.488392 | 7.3:+16159915 | MS.gene50484:CDS |
CAACGACTCATTGTTGATGC+TGG | 0.489469 | 7.3:+16166133 | MS.gene50484:CDS |
GTTTGAAGAGAAAACTCGAT+TGG | 0.493650 | 7.3:+16159528 | MS.gene50484:CDS |
TTAAAAGAGCTGCTTCTCTT+CGG | 0.494511 | 7.3:-16167031 | None:intergenic |
TATTGATTTGGATCTTGCTC+CGG | 0.501036 | 7.3:+16169340 | MS.gene50484:CDS |
GGCTAACTCGTGCTGTCTTG+CGG | 0.509417 | 7.3:+16169810 | MS.gene50484:CDS |
GAGAGAGGTTCTTCTGGCTG+GGG | 0.513395 | 7.3:+16166795 | MS.gene50484:CDS |
TTCCCACTGATATTTCCAAT+CGG | 0.514687 | 7.3:+16159603 | MS.gene50484:CDS |
ACGCAAAATACCTGGGGAGT+TGG | 0.519537 | 7.3:-16168350 | None:intergenic |
AGAATCGGCATCACAATCTC+CGG | 0.521741 | 7.3:-16159874 | None:intergenic |
TCTGCAGCTTTAAGGAGGTC+CGG | 0.526083 | 7.3:-16169359 | None:intergenic |
ACAATGAGTCGTTGATACTC+TGG | 0.527133 | 7.3:-16166124 | None:intergenic |
ACCTGGGGAGTTGGTGATGT+AGG | 0.528742 | 7.3:-16168341 | None:intergenic |
TGTTGTATGTAGGTTTACTT+GGG | 0.530431 | 7.3:+16168564 | MS.gene50484:intron |
TTTGTTACACACTCTTGAGT+AGG | 0.537578 | 7.3:-16167858 | None:intergenic |
CCAACATCAAGACCCTTGTC+AGG | 0.538099 | 7.3:+16166278 | MS.gene50484:CDS |
TCTTAATTTCTGGCGAAGAG+TGG | 0.539798 | 7.3:-16166774 | None:intergenic |
CGGTGCTGTTCCTGTTCTGG+TGG | 0.542335 | 7.3:+16159836 | MS.gene50484:CDS |
CTATGGTCTGGCTGATAATG+AGG | 0.544086 | 7.3:+16167485 | MS.gene50484:CDS |
TCTTCGGCTCTCCAGACAGC+AGG | 0.544227 | 7.3:-16167015 | None:intergenic |
TTTGAGAAGATGAATCCGAT+TGG | 0.544844 | 7.3:-16159618 | None:intergenic |
CCAAGCATTAGTACAAGAGT+TGG | 0.552110 | 7.3:-16166595 | None:intergenic |
GTTGCGGTTATAATTAAGGC+TGG | 0.552330 | 7.3:+16167622 | MS.gene50484:CDS |
TTGGACTGAAGAAGATGAAG+TGG | 0.553591 | 7.3:+16159547 | MS.gene50484:CDS |
CAAGCTGGTATTGCTTATAA+CGG | 0.554280 | 7.3:+16167390 | MS.gene50484:CDS |
CAGATTCACATTGCCCAAAG+AGG | 0.554291 | 7.3:+16167176 | MS.gene50484:intron |
GGAGTTGGTGATGTAGGAGC+AGG | 0.555796 | 7.3:-16168335 | None:intergenic |
AGATTCACATTGCCCAAAGA+GGG | 0.558454 | 7.3:+16167177 | MS.gene50484:intron |
TCCTACATCACCAACTCCCC+AGG | 0.558785 | 7.3:+16168340 | MS.gene50484:CDS |
GTGGAGATTCTGGAGATGGC+CGG | 0.559180 | 7.3:+16159855 | MS.gene50484:CDS |
AATTCAAGCAATTCAACAAG+AGG | 0.560898 | 7.3:-16166398 | None:intergenic |
AACCGCTTCATAATGTATTG+AGG | 0.563257 | 7.3:-16166629 | None:intergenic |
ACTTAAGCATCTCAATTAAG+GGG | 0.564869 | 7.3:-16167208 | None:intergenic |
TCTGGTGGAGATTCTGGAGA+TGG | 0.564942 | 7.3:+16159851 | MS.gene50484:CDS |
TCAAGCAATTCAACAAGAGG+AGG | 0.566321 | 7.3:-16166395 | None:intergenic |
AAGGTACAGAGAGCAGCTGC+AGG | 0.568257 | 7.3:+16166431 | MS.gene50484:CDS |
CTCTCCGAATTCGCCAAAGA+CGG | 0.574852 | 7.3:+16159698 | MS.gene50484:CDS |
CAGCACGAGTTAGCCAAATG+AGG | 0.576411 | 7.3:-16169802 | None:intergenic |
TTCCTCAATACATTATGAAG+CGG | 0.576701 | 7.3:+16166627 | MS.gene50484:CDS |
GATGCTATGTTCAGGTTGGA+CGG | 0.576722 | 7.3:+16166365 | MS.gene50484:intron |
TACAACGAATTCAGATTGCA+AGG | 0.578803 | 7.3:+16167067 | MS.gene50484:CDS |
CCTGACAAGGGTCTTGATGT+TGG | 0.578889 | 7.3:-16166278 | None:intergenic |
ATTTCGTGCAATGTTTGATG+GGG | 0.582844 | 7.3:+16168797 | MS.gene50484:CDS |
GCTTGAATTCAATGATACAA+AGG | 0.586748 | 7.3:+16166412 | MS.gene50484:CDS |
AGGAGCAGGATCAACAATAG+AGG | 0.588221 | 7.3:-16168321 | None:intergenic |
GAGCAGCTGCAGGTGCCTTG+CGG | 0.589452 | 7.3:+16166441 | MS.gene50484:CDS |
TTCGCCAGAAATTAAGAGAG+AGG | 0.590935 | 7.3:+16166780 | MS.gene50484:CDS |
AAAAGCTGCGTTGTGTTGAA+CGG | 0.591611 | 7.3:-16167457 | None:intergenic |
TCTACAAACCCAAAGCAGAA+AGG | 0.592223 | 7.3:+16168251 | MS.gene50484:CDS |
GGAAGAGAAGATGCAAGGGC+GGG | 0.593803 | 7.3:+16167896 | MS.gene50484:CDS |
GCGGTTATAATTAAGGCTGG+TGG | 0.596505 | 7.3:+16167625 | MS.gene50484:CDS |
ACATAATTACTTTGACAGCA+AGG | 0.597151 | 7.3:-16159941 | None:intergenic |
AATCCGATTGGAAATATCAG+TGG | 0.599102 | 7.3:-16159606 | None:intergenic |
CTTTGACAGCAAGGAGACCA+AGG | 0.605081 | 7.3:-16159932 | None:intergenic |
AGCCTGTTATTTGCTTACTG+AGG | 0.611059 | 7.3:+16166824 | MS.gene50484:CDS |
TTCAGCAGCGCTTCACACAA+TGG | 0.615813 | 7.3:+16168280 | MS.gene50484:CDS |
GGTTGGAAGAGAAGATGCAA+GGG | 0.616947 | 7.3:+16167892 | MS.gene50484:CDS |
TTGCGAATATGCTATTTCTG+AGG | 0.617242 | 7.3:+16169412 | MS.gene50484:CDS |
ATCCGATTGGAAATATCAGT+GGG | 0.618352 | 7.3:-16159605 | None:intergenic |
TTGAAATGCGAGAGTCCGCA+AGG | 0.619046 | 7.3:-16166456 | None:intergenic |
AGGTTGGAAGAGAAGATGCA+AGG | 0.620033 | 7.3:+16167891 | MS.gene50484:CDS |
ATTGATCTGCAGCTTTAAGG+AGG | 0.621836 | 7.3:-16169364 | None:intergenic |
TGTATGACAGGACAATGTTG+CGG | 0.623919 | 7.3:+16167606 | MS.gene50484:intron |
CAAGCAATTCAACAAGAGGA+GGG | 0.624329 | 7.3:-16166394 | None:intergenic |
AGCACGAGTTAGCCAAATGA+GGG | 0.625600 | 7.3:-16169801 | None:intergenic |
CGTCTTTGGCGAATTCGGAG+AGG | 0.626688 | 7.3:-16159697 | None:intergenic |
GTTGATGTTATAGTCAATTG+CGG | 0.627271 | 7.3:+16159816 | MS.gene50484:CDS |
TTTCGTGCAATGTTTGATGG+GGG | 0.629862 | 7.3:+16168798 | MS.gene50484:CDS |
TTATAAGTATGATATGGAGA+AGG | 0.629891 | 7.3:+16159896 | MS.gene50484:CDS |
TAGGACTCACACAATCAAGC+TGG | 0.630352 | 7.3:+16167375 | MS.gene50484:intron |
CAACTCTACGAGATAGGACA+AGG | 0.637463 | 7.3:-16166158 | None:intergenic |
TGGAAGAGAAGATGCAAGGG+CGG | 0.639012 | 7.3:+16167895 | MS.gene50484:CDS |
ATTCTTGTAGGATATTTCTG+TGG | 0.643820 | 7.3:+16169509 | MS.gene50484:intron |
ACAGTGCTTGAGAAATTACA+GGG | 0.650555 | 7.3:-16166198 | None:intergenic |
GCTGGTATTGCTTATAACGG+TGG | 0.661504 | 7.3:+16167393 | MS.gene50484:CDS |
ATGTCTTTGAGTTGATGATG+AGG | 0.668712 | 7.3:+16169206 | MS.gene50484:CDS |
GATTCACATTGCCCAAAGAG+GGG | 0.672932 | 7.3:+16167178 | MS.gene50484:intron |
ATAATCTGAGTACCAAACCA+TGG | 0.693303 | 7.3:+16169622 | MS.gene50484:CDS |
GTGTCAAGAAGATCAAGCAG+AGG | 0.704906 | 7.3:-16167423 | None:intergenic |
GCTATGTTCAGGTTGGACGG+TGG | 0.729893 | 7.3:+16166368 | MS.gene50484:intron |
GTTATATCTTATGCGCACTG+GGG | 0.753652 | 7.3:+16168024 | MS.gene50484:CDS |
GTGGGAAGATCTAAACGACG+AGG | 0.773323 | 7.3:-16159587 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 16159503 | 16169840 | 16159503 | ID=MS.gene50484 |
chr7.3 | mRNA | 16159503 | 16169840 | 16159503 | ID=MS.gene50484.t1;Parent=MS.gene50484 |
chr7.3 | exon | 16159503 | 16159719 | 16159503 | ID=MS.gene50484.t1.exon1;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16159503 | 16159719 | 16159503 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16159808 | 16159953 | 16159808 | ID=MS.gene50484.t1.exon2;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16159808 | 16159953 | 16159808 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16166124 | 16166299 | 16166124 | ID=MS.gene50484.t1.exon3;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16166124 | 16166299 | 16166124 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16166379 | 16166499 | 16166379 | ID=MS.gene50484.t1.exon4;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16166379 | 16166499 | 16166379 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16166574 | 16166648 | 16166574 | ID=MS.gene50484.t1.exon5;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16166574 | 16166648 | 16166574 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16166751 | 16166845 | 16166751 | ID=MS.gene50484.t1.exon6;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16166751 | 16166845 | 16166751 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16167013 | 16167088 | 16167013 | ID=MS.gene50484.t1.exon7;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16167013 | 16167088 | 16167013 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16167179 | 16167286 | 16167179 | ID=MS.gene50484.t1.exon8;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16167179 | 16167286 | 16167179 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16167378 | 16167506 | 16167378 | ID=MS.gene50484.t1.exon9;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16167378 | 16167506 | 16167378 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16167616 | 16167684 | 16167616 | ID=MS.gene50484.t1.exon10;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16167616 | 16167684 | 16167616 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16167858 | 16167917 | 16167858 | ID=MS.gene50484.t1.exon11;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16167858 | 16167917 | 16167858 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16168010 | 16168133 | 16168010 | ID=MS.gene50484.t1.exon12;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16168010 | 16168133 | 16168010 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16168222 | 16168361 | 16168222 | ID=MS.gene50484.t1.exon13;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16168222 | 16168361 | 16168222 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16168576 | 16168639 | 16168576 | ID=MS.gene50484.t1.exon14;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16168576 | 16168639 | 16168576 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16168748 | 16168827 | 16168748 | ID=MS.gene50484.t1.exon15;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16168748 | 16168827 | 16168748 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16169163 | 16169227 | 16169163 | ID=MS.gene50484.t1.exon16;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16169163 | 16169227 | 16169163 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16169316 | 16169433 | 16169316 | ID=MS.gene50484.t1.exon17;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16169316 | 16169433 | 16169316 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16169519 | 16169643 | 16169519 | ID=MS.gene50484.t1.exon18;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16169519 | 16169643 | 16169519 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
chr7.3 | exon | 16169735 | 16169840 | 16169735 | ID=MS.gene50484.t1.exon19;Parent=MS.gene50484.t1 |
chr7.3 | CDS | 16169735 | 16169840 | 16169735 | ID=cds.MS.gene50484.t1;Parent=MS.gene50484.t1 |
Gene Sequence |
Protein sequence |