Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062327.t1 | XP_003617481.1 | 68.5 | 289 | 1 | 1 | 1 | 199 | 1 | 289 | 4.90E-96 | 360.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062327.t1 | P87027 | 47.6 | 168 | 88 | 0 | 32 | 199 | 28 | 195 | 1.1e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062327.t1 | G7K3G2 | 68.5 | 289 | 1 | 1 | 1 | 199 | 1 | 289 | 3.5e-96 | 360.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04919 | MS.gene062327 | 0.803325 | 3.68E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene062327 | 0.818403 | 2.00E-52 | -1.69E-46 |
| MS.gene051154 | MS.gene062327 | 0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene051637 | MS.gene062327 | 0.800907 | 1.16E-48 | -1.69E-46 |
| MS.gene052118 | MS.gene062327 | 0.804763 | 1.85E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene062327 | 0.833195 | 6.13E-56 | -1.69E-46 |
| MS.gene053963 | MS.gene062327 | 0.840087 | 1.07E-57 | -1.69E-46 |
| MS.gene054022 | MS.gene062327 | 0.818928 | 1.52E-52 | -1.69E-46 |
| MS.gene05410 | MS.gene062327 | 0.814725 | 1.33E-51 | -1.69E-46 |
| MS.gene05439 | MS.gene062327 | 0.807045 | 6.12E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene062327 | 0.860061 | 2.69E-63 | -1.69E-46 |
| MS.gene054893 | MS.gene062327 | 0.863115 | 3.13E-64 | -1.69E-46 |
| MS.gene055147 | MS.gene062327 | 0.848347 | 6.49E-60 | -1.69E-46 |
| MS.gene055148 | MS.gene062327 | 0.837941 | 3.86E-57 | -1.69E-46 |
| MS.gene055149 | MS.gene062327 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene062327 | 0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene05624 | MS.gene062327 | 0.813499 | 2.48E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene062327 | 0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene062327 | 0.80812 | 3.62E-50 | -1.69E-46 |
| MS.gene057622 | MS.gene062327 | 0.807978 | 3.88E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene062327 | 0.847554 | 1.07E-59 | -1.69E-46 |
| MS.gene05878 | MS.gene062327 | 0.823088 | 1.67E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene062327 | 0.838465 | 2.83E-57 | -1.69E-46 |
| MS.gene05956 | MS.gene062327 | 0.808467 | 3.05E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene062327 | -0.826061 | 3.34E-54 | -1.69E-46 |
| MS.gene06023 | MS.gene062327 | 0.824105 | 9.67E-54 | -1.69E-46 |
| MS.gene060412 | MS.gene062327 | 0.835671 | 1.47E-56 | -1.69E-46 |
| MS.gene060413 | MS.gene062327 | 0.810449 | 1.15E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene062327 | 0.800691 | 1.28E-48 | -1.69E-46 |
| MS.gene060522 | MS.gene062327 | 0.807164 | 5.78E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene062327 | 0.811752 | 5.98E-51 | -1.69E-46 |
| MS.gene061047 | MS.gene062327 | 0.801733 | 7.83E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062327.t1 | MTR_5g092060 | 100.000 | 168 | 0 | 0 | 32 | 199 | 122 | 289 | 1.25e-124 | 353 |
| MS.gene062327.t1 | MTR_5g092060 | 88.889 | 36 | 4 | 0 | 1 | 36 | 1 | 36 | 3.95e-14 | 69.7 |
| MS.gene062327.t1 | MTR_4g047870 | 75.595 | 168 | 41 | 0 | 32 | 199 | 109 | 276 | 3.89e-95 | 278 |
| MS.gene062327.t1 | MTR_5g013900 | 28.571 | 133 | 89 | 3 | 48 | 179 | 43 | 170 | 1.53e-11 | 61.2 |
| MS.gene062327.t1 | MTR_4g098950 | 27.068 | 133 | 91 | 3 | 48 | 179 | 43 | 170 | 8.74e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062327.t1 | AT5G54840 | 78.107 | 169 | 35 | 2 | 32 | 199 | 119 | 286 | 1.53e-95 | 280 |
| MS.gene062327.t1 | AT3G21700 | 68.047 | 169 | 51 | 2 | 33 | 199 | 125 | 292 | 2.23e-84 | 251 |
| MS.gene062327.t1 | AT3G21700 | 67.456 | 169 | 51 | 3 | 33 | 199 | 125 | 291 | 4.63e-82 | 246 |
| MS.gene062327.t1 | AT3G21700 | 62.609 | 115 | 39 | 3 | 33 | 145 | 125 | 237 | 2.57e-46 | 153 |
| MS.gene062327.t1 | AT5G54840 | 71.264 | 87 | 23 | 2 | 32 | 117 | 119 | 204 | 9.17e-38 | 130 |
| MS.gene062327.t1 | AT5G54840 | 71.264 | 87 | 23 | 2 | 32 | 117 | 119 | 204 | 1.37e-37 | 130 |
| MS.gene062327.t1 | AT2G44610 | 27.068 | 133 | 91 | 2 | 48 | 179 | 43 | 170 | 3.80e-12 | 63.2 |
Find 37 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATTTAGAAGTCAATTA+TGG | 0.162376 | 5.1:+73631501 | None:intergenic |
| GCAGAGTTGTGTCATCTTCT+TGG | 0.184949 | 5.1:+73633893 | None:intergenic |
| TCTAACAAAATCATCAAATT+TGG | 0.204038 | 5.1:+73631934 | None:intergenic |
| GTTCAGGTTGATGTTAAATA+TGG | 0.230732 | 5.1:-73633861 | MS.gene062327:CDS |
| AATGGAAGGATTGAATTTAA+TGG | 0.251785 | 5.1:-73633233 | MS.gene062327:CDS |
| ACAATTGTCCATTGTAAATC+TGG | 0.259047 | 5.1:+73631905 | None:intergenic |
| ACAATTTAGAAGTCAATTAT+GGG | 0.359970 | 5.1:+73631502 | None:intergenic |
| ACTGCAATTCCCATTCTAAT+AGG | 0.364632 | 5.1:-73631959 | MS.gene062327:CDS |
| CAAAGCTCTTTAACTTGCCT+TGG | 0.379264 | 5.1:-73631555 | MS.gene062327:CDS |
| ATAGAAAGAAATTTGAAAGT+TGG | 0.387772 | 5.1:-73631529 | MS.gene062327:CDS |
| AAATTTGGTTCCTATTAGAA+TGG | 0.407270 | 5.1:+73631949 | None:intergenic |
| GACAAAACTTTGTATGTTCA+AGG | 0.421423 | 5.1:-73633211 | MS.gene062327:CDS |
| ACTCTGCAGGAAAATTGTTC+AGG | 0.422078 | 5.1:-73633877 | MS.gene062327:CDS |
| GTGTTGCACTTGAAAAGAAA+AGG | 0.422846 | 5.1:+73631617 | None:intergenic |
| TTAAATATGGTATGCTTCAA+AGG | 0.431941 | 5.1:-73633848 | MS.gene062327:CDS |
| CAATTGTCCATTGTAAATCT+GGG | 0.433079 | 5.1:+73631906 | None:intergenic |
| AACTGCATCTTTACAAGCCA+TGG | 0.445088 | 5.1:+73632954 | None:intergenic |
| GGCTTATGCAAGGGCAATGA+AGG | 0.452873 | 5.1:-73631644 | MS.gene062327:CDS |
| AGAAAAGAGGAGTTTGCAAA+TGG | 0.455607 | 5.1:-73633251 | MS.gene062327:CDS |
| AATTTGGTTCCTATTAGAAT+GGG | 0.469293 | 5.1:+73631950 | None:intergenic |
| TGAAGCAAGAAAGTGGAATC+AGG | 0.481024 | 5.1:-73632355 | MS.gene062327:intron |
| AAGAGGAGTTTGCAAATGGA+AGG | 0.488557 | 5.1:-73633247 | MS.gene062327:CDS |
| TAAATATGGTATGCTTCAAA+GGG | 0.523765 | 5.1:-73633847 | MS.gene062327:intron |
| AAATTTCTTTCTATCGTCCA+AGG | 0.528916 | 5.1:+73631538 | None:intergenic |
| AGAAGATGACACAACTCTGC+AGG | 0.552513 | 5.1:-73633890 | MS.gene062327:CDS |
| TACAGGCAAGGGCTTATGCA+AGG | 0.559748 | 5.1:-73631654 | MS.gene062327:intron |
| TGTTGCACTTGAAAAGAAAA+GGG | 0.560066 | 5.1:+73631618 | None:intergenic |
| TAGGAAATGAGGTAGAAAAG+AGG | 0.564038 | 5.1:-73633264 | MS.gene062327:CDS |
| GTCCTTGGATCAAATTCCCA+TGG | 0.573998 | 5.1:-73632971 | MS.gene062327:CDS |
| GGTACAGTGAAGCAAGAAAG+TGG | 0.579957 | 5.1:-73632362 | MS.gene062327:CDS |
| AATTGTCCATTGTAAATCTG+GGG | 0.582951 | 5.1:+73631907 | None:intergenic |
| GATCAAGTACGTAGGAAATG+AGG | 0.589406 | 5.1:-73633275 | MS.gene062327:CDS |
| ACAATGGACAATTGTAACAC+AGG | 0.603332 | 5.1:-73631897 | MS.gene062327:intron |
| ACAGGCAAGGGCTTATGCAA+GGG | 0.634009 | 5.1:-73631653 | MS.gene062327:intron |
| ACTGCATCTTTACAAGCCAT+GGG | 0.635433 | 5.1:+73632955 | None:intergenic |
| AGCCATGGGAATTTGATCCA+AGG | 0.654764 | 5.1:+73632969 | None:intergenic |
| ATTGTCCATTGTAAATCTGG+GGG | 0.655553 | 5.1:+73631908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAATATAGTAATATTT+CGG | + | chr5.1:73632958-73632977 | None:intergenic | 10.0% |
| !! | AAAAAAAAGGACTAATATAT+GGG | - | chr5.1:73632866-73632885 | MS.gene062327:intron | 15.0% |
| !! | AAAACATAATACATCTAATT+AGG | + | chr5.1:73633408-73633427 | None:intergenic | 15.0% |
| !! | AAACATAATACATCTAATTA+GGG | + | chr5.1:73633407-73633426 | None:intergenic | 15.0% |
| !!! | AAAACTAACACTTTATTTAA+AGG | + | chr5.1:73633695-73633714 | None:intergenic | 15.0% |
| !!! | ATCATTTAACTTAACATTTT+TGG | - | chr5.1:73632641-73632660 | MS.gene062327:intron | 15.0% |
| !!! | ATTAGATGTATTATGTTTTA+TGG | - | chr5.1:73633409-73633428 | MS.gene062327:intron | 15.0% |
| !!! | TAAGGAAACATTTTAAATAA+AGG | - | chr5.1:73632697-73632716 | MS.gene062327:intron | 15.0% |
| !!! | TTAGTTTTTACCATATTATT+TGG | - | chr5.1:73633707-73633726 | MS.gene062327:intron | 15.0% |
| !!! | TTTTTTAAGTTAGTTATTGA+TGG | - | chr5.1:73632395-73632414 | MS.gene062327:intron | 15.0% |
| !! | AATAACAAAGCCAAATAATA+TGG | + | chr5.1:73633720-73633739 | None:intergenic | 20.0% |
| !! | ATAGAAAGAAATTTGAAAGT+TGG | - | chr5.1:73633896-73633915 | MS.gene062327:CDS | 20.0% |
| !! | ATTGATGGAAAATTATTATG+TGG | - | chr5.1:73632410-73632429 | MS.gene062327:intron | 20.0% |
| !! | CTATATGTATTCGAAAAAAA+AGG | - | chr5.1:73632853-73632872 | MS.gene062327:intron | 20.0% |
| !! | GAAAAAAAAGGACTAATATA+TGG | - | chr5.1:73632865-73632884 | MS.gene062327:intron | 20.0% |
| !! | TAAAAAATAAATGCAGAACA+TGG | + | chr5.1:73632321-73632340 | None:intergenic | 20.0% |
| !! | TAACCTCAAAATTAAGTAAA+TGG | + | chr5.1:73632587-73632606 | None:intergenic | 20.0% |
| !! | TAAGTAAATGGAAAAAAAGA+AGG | + | chr5.1:73632575-73632594 | None:intergenic | 20.0% |
| !! | TAAGTTCTATAGGAATATAA+TGG | - | chr5.1:73632987-73633006 | MS.gene062327:intron | 20.0% |
| !! | TCGAAAATCATATAATTCAA+AGG | + | chr5.1:73632042-73632061 | None:intergenic | 20.0% |
| !! | TCTAACAAAATCATCAAATT+TGG | + | chr5.1:73633494-73633513 | None:intergenic | 20.0% |
| !! | TTCTTACTATAATAGTTCAA+AGG | + | chr5.1:73633207-73633226 | None:intergenic | 20.0% |
| !! | TTGATGGAAAATTATTATGT+GGG | - | chr5.1:73632411-73632430 | MS.gene062327:intron | 20.0% |
| !! | TTTACCTTAAATGTTGAAAT+GGG | - | chr5.1:73631896-73631915 | MS.gene062327:intron | 20.0% |
| !!! | AGTGACACTTTTTAAAATTA+TGG | + | chr5.1:73632618-73632637 | None:intergenic | 20.0% |
| !!! | CAAAATTTTCAAGTTTATCA+TGG | - | chr5.1:73633847-73633866 | MS.gene062327:intron | 20.0% |
| !!! | GTAAGTTCTGAAATATTATT+AGG | - | chr5.1:73632541-73632560 | MS.gene062327:intron | 20.0% |
| !!! | GTGACACTTTTTAAAATTAT+GGG | + | chr5.1:73632617-73632636 | None:intergenic | 20.0% |
| !!! | TATAGTAAGAAAAAGTTTTG+AGG | - | chr5.1:73633216-73633235 | MS.gene062327:CDS | 20.0% |
| !!! | TATTTTTAAAACCTATGCTT+TGG | - | chr5.1:73632745-73632764 | MS.gene062327:intron | 20.0% |
| !!! | TCGTATTTCATTTTGTATAT+GGG | - | chr5.1:73632240-73632259 | MS.gene062327:intron | 20.0% |
| !!! | TTATATGATTTTCGATTTGT+TGG | - | chr5.1:73632047-73632066 | MS.gene062327:intron | 20.0% |
| !!! | TTTCCATTTACTTAATTTTG+AGG | - | chr5.1:73632581-73632600 | MS.gene062327:intron | 20.0% |
| !!! | TTTTATGCTATAAGTTCTAT+AGG | - | chr5.1:73632977-73632996 | MS.gene062327:CDS | 20.0% |
| !!! | TTTTTTAGATTTCTCTCATT+AGG | - | chr5.1:73632334-73632353 | MS.gene062327:intron | 20.0% |
| ! | AATGGAAGGATTGAATTTAA+TGG | - | chr5.1:73632192-73632211 | MS.gene062327:intron | 25.0% |
| ! | CTTTACCTTAAATGTTGAAA+TGG | - | chr5.1:73631895-73631914 | MS.gene062327:intron | 25.0% |
| ! | GAACCTCAAAATTTAGTTAA+AGG | - | chr5.1:73632915-73632934 | MS.gene062327:CDS | 25.0% |
| ! | GTATGTATTTCATAGGTTAT+AGG | - | chr5.1:73632092-73632111 | MS.gene062327:intron | 25.0% |
| ! | TAAATATGGTATGCTTCAAA+GGG | - | chr5.1:73631578-73631597 | MS.gene062327:CDS | 25.0% |
| ! | TAATCAACTTACATCTTAAG+TGG | - | chr5.1:73633570-73633589 | MS.gene062327:intron | 25.0% |
| ! | TCACTGAAATTAAATTTCGT+TGG | - | chr5.1:73633114-73633133 | MS.gene062327:intron | 25.0% |
| ! | TGAGGTAGTTAAAATAGAAA+TGG | - | chr5.1:73633234-73633253 | MS.gene062327:CDS | 25.0% |
| ! | TGATGGAAAATTATTATGTG+GGG | - | chr5.1:73632412-73632431 | MS.gene062327:intron | 25.0% |
| ! | TTAAATATGGTATGCTTCAA+AGG | - | chr5.1:73631577-73631596 | MS.gene062327:CDS | 25.0% |
| ! | TTATTATGTGGGGTTTAATT+AGG | - | chr5.1:73632422-73632441 | MS.gene062327:intron | 25.0% |
| !! | AAAAAGTAGTTTTCCCAATA+TGG | + | chr5.1:73631857-73631876 | None:intergenic | 25.0% |
| !! | AAATTTGGTTCCTATTAGAA+TGG | + | chr5.1:73633479-73633498 | None:intergenic | 25.0% |
| !! | AATTTGGTTCCTATTAGAAT+GGG | + | chr5.1:73633478-73633497 | None:intergenic | 25.0% |
| !! | ATATGTTTGATTAGAAGTGT+CGG | + | chr5.1:73631979-73631998 | None:intergenic | 25.0% |
| !! | CTCGTATTTCATTTTGTATA+TGG | - | chr5.1:73632239-73632258 | MS.gene062327:intron | 25.0% |
| !! | GTAAGTGACATTAAATTTTC+AGG | - | chr5.1:73633319-73633338 | MS.gene062327:intron | 25.0% |
| !! | GTTCATTTGGAATAAACTTA+TGG | - | chr5.1:73631626-73631645 | MS.gene062327:CDS | 25.0% |
| !!! | AACCTTAAGATTAGTTTGTT+GGG | - | chr5.1:73631825-73631844 | MS.gene062327:intron | 25.0% |
| !!! | ATCTTAAGTGGATTCAATTT+TGG | - | chr5.1:73633582-73633601 | MS.gene062327:intron | 25.0% |
| !!! | CTAAATTTTGAGGTTCAAAT+TGG | + | chr5.1:73632911-73632930 | None:intergenic | 25.0% |
| !!! | TAACATTTTTGGTTCATTTG+TGG | - | chr5.1:73632652-73632671 | MS.gene062327:intron | 25.0% |
| !!! | TATTGGGAAAACTACTTTTT+TGG | - | chr5.1:73631857-73631876 | MS.gene062327:intron | 25.0% |
| !!! | TCTTAAGTGGATTCAATTTT+GGG | - | chr5.1:73633583-73633602 | MS.gene062327:intron | 25.0% |
| !!! | TTCATTGCTTTTCTTTTTGT+GGG | - | chr5.1:73633650-73633669 | MS.gene062327:intron | 25.0% |
| AAATTTCTTTCTATCGTCCA+AGG | + | chr5.1:73633890-73633909 | None:intergenic | 30.0% | |
| AACAACAGCATACCAATAAT+GGG | - | chr5.1:73631778-73631797 | MS.gene062327:intron | 30.0% | |
| AATTGTCCATTGTAAATCTG+GGG | + | chr5.1:73633521-73633540 | None:intergenic | 30.0% | |
| ACAATTGTCCATTGTAAATC+TGG | + | chr5.1:73633523-73633542 | None:intergenic | 30.0% | |
| ATCTGGTGTATGTATTTCAT+AGG | - | chr5.1:73632085-73632104 | MS.gene062327:intron | 30.0% | |
| ATGACCCATTTCAACATTTA+AGG | + | chr5.1:73631903-73631922 | None:intergenic | 30.0% | |
| CAATTGTCCATTGTAAATCT+GGG | + | chr5.1:73633522-73633541 | None:intergenic | 30.0% | |
| CGAATACATATAGACAATGT+CGG | + | chr5.1:73632846-73632865 | None:intergenic | 30.0% | |
| GACAAAACTTTGTATGTTCA+AGG | - | chr5.1:73632214-73632233 | MS.gene062327:intron | 30.0% | |
| TCTGCAAATTGAATGTAACA+TGG | + | chr5.1:73633447-73633466 | None:intergenic | 30.0% | |
| TGTTGCACTTGAAAAGAAAA+GGG | + | chr5.1:73633810-73633829 | None:intergenic | 30.0% | |
| ! | AGTTGGAACTACATTTTACT+TGG | + | chr5.1:73633154-73633173 | None:intergenic | 30.0% |
| ! | ATTTCGGCTTACTTATTTCT+TGG | + | chr5.1:73632942-73632961 | None:intergenic | 30.0% |
| ! | CAACTACTAGTTTATAGTGA+AGG | - | chr5.1:73632793-73632812 | MS.gene062327:intron | 30.0% |
| ! | CTTTTGTTGGTCAGTTTTTT+AGG | - | chr5.1:73631604-73631623 | MS.gene062327:CDS | 30.0% |
| ! | GGTCCTTTAACTAAATTTTG+AGG | + | chr5.1:73632921-73632940 | None:intergenic | 30.0% |
| !! | AAACTTATGGTTTGTTCTGT+TGG | - | chr5.1:73631639-73631658 | MS.gene062327:CDS | 30.0% |
| !! | AATGAAAAGCATTTGGAAGT+TGG | + | chr5.1:73633171-73633190 | None:intergenic | 30.0% |
| !! | CTTAAGTGGATTCAATTTTG+GGG | - | chr5.1:73633584-73633603 | MS.gene062327:intron | 30.0% |
| !! | GAACCTTAAGATTAGTTTGT+TGG | - | chr5.1:73631824-73631843 | MS.gene062327:intron | 30.0% |
| !! | GTGTGAAAATGAAAAGCATT+TGG | + | chr5.1:73633178-73633197 | None:intergenic | 30.0% |
| !! | GTTCAGGTTGATGTTAAATA+TGG | - | chr5.1:73631564-73631583 | MS.gene062327:CDS | 30.0% |
| !! | GTTCATTGCTTTTCTTTTTG+TGG | - | chr5.1:73633649-73633668 | MS.gene062327:intron | 30.0% |
| !!! | AATTTTGAGGTTCAAATTGG+TGG | + | chr5.1:73632908-73632927 | None:intergenic | 30.0% |
| !!! | CATTTTAGTGTTGACTATGT+TGG | - | chr5.1:73631934-73631953 | MS.gene062327:CDS | 30.0% |
| !!! | GTCAGTTTTTTAGGTTCATT+TGG | - | chr5.1:73631613-73631632 | MS.gene062327:CDS | 30.0% |
| ACAATGGACAATTGTAACAC+AGG | - | chr5.1:73633528-73633547 | MS.gene062327:intron | 35.0% | |
| ACTAATATATGGGACCAATC+TGG | - | chr5.1:73632876-73632895 | MS.gene062327:intron | 35.0% | |
| ACTGCAATTCCCATTCTAAT+AGG | - | chr5.1:73633466-73633485 | MS.gene062327:intron | 35.0% | |
| ACTTTAACCAACATGCATGT+AGG | + | chr5.1:73633610-73633629 | None:intergenic | 35.0% | |
| AGAAAAGAGGAGTTTGCAAA+TGG | - | chr5.1:73632174-73632193 | MS.gene062327:intron | 35.0% | |
| ATCTGACTCATACCCATTAT+TGG | + | chr5.1:73631793-73631812 | None:intergenic | 35.0% | |
| ATTAGGTGACAAAAAGTCCT+TGG | - | chr5.1:73632439-73632458 | MS.gene062327:intron | 35.0% | |
| ATTGTCCATTGTAAATCTGG+GGG | + | chr5.1:73633520-73633539 | None:intergenic | 35.0% | |
| CACCCAACAAACTAATCTTA+AGG | + | chr5.1:73631830-73631849 | None:intergenic | 35.0% | |
| CTAATATATGGGACCAATCT+GGG | - | chr5.1:73632877-73632896 | MS.gene062327:intron | 35.0% | |
| GAACAACAGCATACCAATAA+TGG | - | chr5.1:73631777-73631796 | MS.gene062327:intron | 35.0% | |
| GACTTGTACCTTTCATATAC+AGG | - | chr5.1:73633754-73633773 | MS.gene062327:intron | 35.0% | |
| GGTCTTTGAATGTTTGAATC+TGG | - | chr5.1:73632068-73632087 | MS.gene062327:intron | 35.0% | |
| GTATGAGTCAGATTCTGATT+TGG | - | chr5.1:73631800-73631819 | MS.gene062327:intron | 35.0% | |
| GTGTTGCACTTGAAAAGAAA+AGG | + | chr5.1:73633811-73633830 | None:intergenic | 35.0% | |
| TACCTTTCATATACAGGCAA+GGG | - | chr5.1:73633760-73633779 | MS.gene062327:intron | 35.0% | |
| TAGGAAATGAGGTAGAAAAG+AGG | - | chr5.1:73632161-73632180 | MS.gene062327:intron | 35.0% | |
| TGAAACTGTAGTAGCCTTTA+TGG | - | chr5.1:73633286-73633305 | MS.gene062327:intron | 35.0% | |
| TTACCACTTATCAGCCATAA+AGG | + | chr5.1:73633303-73633322 | None:intergenic | 35.0% | |
| ! | TGGAACTACATTTTACTTGG+TGG | + | chr5.1:73633151-73633170 | None:intergenic | 35.0% |
| ! | TTTTCTCAGATCAAGTACGT+AGG | - | chr5.1:73632142-73632161 | MS.gene062327:intron | 35.0% |
| ! | TTTTGTATATGGGATGTTGC+AGG | - | chr5.1:73632250-73632269 | MS.gene062327:intron | 35.0% |
| !!! | CTTCAAAGGGTATCTTTTGT+TGG | - | chr5.1:73631591-73631610 | MS.gene062327:CDS | 35.0% |
| AACATGGAGTTGACATGGTA+AGG | - | chr5.1:73632679-73632698 | MS.gene062327:intron | 40.0% | |
| AACCTTCTTCTCCAAAGCAT+AGG | + | chr5.1:73632759-73632778 | None:intergenic | 40.0% | |
| AACTGCATCTTTACAAGCCA+TGG | + | chr5.1:73632474-73632493 | None:intergenic | 40.0% | |
| AAGAGGAGTTTGCAAATGGA+AGG | - | chr5.1:73632178-73632197 | MS.gene062327:intron | 40.0% | |
| ACTCTGCAGGAAAATTGTTC+AGG | - | chr5.1:73631548-73631567 | MS.gene062327:CDS | 40.0% | |
| ACTGCATCTTTACAAGCCAT+GGG | + | chr5.1:73632473-73632492 | None:intergenic | 40.0% | |
| GATCAAGTACGTAGGAAATG+AGG | - | chr5.1:73632150-73632169 | MS.gene062327:intron | 40.0% | |
| GTACCTTTCATATACAGGCA+AGG | - | chr5.1:73633759-73633778 | MS.gene062327:intron | 40.0% | |
| TAGCCTTTATGGCTGATAAG+TGG | - | chr5.1:73633297-73633316 | MS.gene062327:intron | 40.0% | |
| TGAAGCAAGAAAGTGGAATC+AGG | - | chr5.1:73633070-73633089 | MS.gene062327:intron | 40.0% | |
| TGTTGGGTGATTGCCATATT+GGG | - | chr5.1:73631841-73631860 | MS.gene062327:intron | 40.0% | |
| TTGTTGGGTGATTGCCATAT+TGG | - | chr5.1:73631840-73631859 | MS.gene062327:intron | 40.0% | |
| !! | AACCTATGCTTTGGAGAAGA+AGG | - | chr5.1:73632754-73632773 | MS.gene062327:intron | 40.0% |
| !! | ATTCAAAGGCGTCTCAATGT+CGG | + | chr5.1:73632028-73632047 | None:intergenic | 40.0% |
| !! | CAAAGCTCTTTAACTTGCCT+TGG | - | chr5.1:73633870-73633889 | MS.gene062327:CDS | 40.0% |
| !! | CTGTGTTTTTGCAGTGTTGT+TGG | - | chr5.1:73633038-73633057 | MS.gene062327:intron | 40.0% |
| !! | GTTCATTTGTGGCTCTAACA+TGG | - | chr5.1:73632663-73632682 | MS.gene062327:intron | 40.0% |
| !! | GTTTTTGCAGTGTTGTTGGA+TGG | - | chr5.1:73633042-73633061 | MS.gene062327:intron | 40.0% |
| AAACCATCATCAACCGTAGC+CGG | + | chr5.1:73631750-73631769 | None:intergenic | 45.0% | |
| AGAAGATGACACAACTCTGC+AGG | - | chr5.1:73631535-73631554 | MS.gene062327:CDS | 45.0% | |
| AGCCATGGGAATTTGATCCA+AGG | + | chr5.1:73632459-73632478 | None:intergenic | 45.0% | |
| AGCCCTTGCCTGTATATGAA+AGG | + | chr5.1:73633765-73633784 | None:intergenic | 45.0% | |
| ATATATGGGACCAATCTGGG+TGG | - | chr5.1:73632880-73632899 | MS.gene062327:intron | 45.0% | |
| GACTTCCCCCAGATTTACAA+TGG | - | chr5.1:73633512-73633531 | MS.gene062327:intron | 45.0% | |
| GCAGAGTTGTGTCATCTTCT+TGG | + | chr5.1:73631535-73631554 | None:intergenic | 45.0% | |
| GCTCTAACATGGAGTTGACA+TGG | - | chr5.1:73632674-73632693 | MS.gene062327:intron | 45.0% | |
| GGTACAGTGAAGCAAGAAAG+TGG | - | chr5.1:73633063-73633082 | MS.gene062327:intron | 45.0% | |
| GTCCTTGGATCAAATTCCCA+TGG | - | chr5.1:73632454-73632473 | MS.gene062327:intron | 45.0% | |
| ACAGGCAAGGGCTTATGCAA+GGG | - | chr5.1:73633772-73633791 | MS.gene062327:intron | 50.0% | |
| GGCTTATGCAAGGGCAATGA+AGG | - | chr5.1:73633781-73633800 | MS.gene062327:intron | 50.0% | |
| TACAGGCAAGGGCTTATGCA+AGG | - | chr5.1:73633771-73633790 | MS.gene062327:intron | 50.0% | |
| ! | TTTGGGGCCTACATGCATGT+TGG | - | chr5.1:73633600-73633619 | MS.gene062327:intron | 50.0% |
| TCATCAACCGTAGCCGGAGA+CGG | + | chr5.1:73631744-73631763 | None:intergenic | 55.0% | |
| ! | ATTGGTGGCTCCACCCAGAT+TGG | + | chr5.1:73632893-73632912 | None:intergenic | 55.0% |
| !! | TCTCCGGCTACGGTTGATGA+TGG | - | chr5.1:73631744-73631763 | MS.gene062327:intron | 55.0% |
| TCAACCGTAGCCGGAGACGG+CGG | + | chr5.1:73631741-73631760 | None:intergenic | 65.0% | |
| GCCGGAGACGGCGGCGACAA+CGG | + | chr5.1:73631732-73631751 | None:intergenic | 75.0% | |
| GCCGTTGTCGCCGCCGTCTC+CGG | - | chr5.1:73631728-73631747 | MS.gene062327:intron | 75.0% | |
| GTCGCCGCCGTCTCCGGCTA+CGG | - | chr5.1:73631734-73631753 | MS.gene062327:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 73631507 | 73633940 | 73631507 | ID=MS.gene062327 |
| chr5.1 | mRNA | 73631507 | 73633940 | 73631507 | ID=MS.gene062327.t1;Parent=MS.gene062327 |
| chr5.1 | exon | 73633848 | 73633940 | 73633848 | ID=MS.gene062327.t1.exon1;Parent=MS.gene062327.t1 |
| chr5.1 | CDS | 73633848 | 73633940 | 73633848 | ID=cds.MS.gene062327.t1;Parent=MS.gene062327.t1 |
| chr5.1 | exon | 73633176 | 73633296 | 73633176 | ID=MS.gene062327.t1.exon2;Parent=MS.gene062327.t1 |
| chr5.1 | CDS | 73633176 | 73633296 | 73633176 | ID=cds.MS.gene062327.t1;Parent=MS.gene062327.t1 |
| chr5.1 | exon | 73632907 | 73633003 | 73632907 | ID=MS.gene062327.t1.exon3;Parent=MS.gene062327.t1 |
| chr5.1 | CDS | 73632907 | 73633003 | 73632907 | ID=cds.MS.gene062327.t1;Parent=MS.gene062327.t1 |
| chr5.1 | exon | 73632356 | 73632395 | 73632356 | ID=MS.gene062327.t1.exon4;Parent=MS.gene062327.t1 |
| chr5.1 | CDS | 73632356 | 73632395 | 73632356 | ID=cds.MS.gene062327.t1;Parent=MS.gene062327.t1 |
| chr5.1 | exon | 73631898 | 73631981 | 73631898 | ID=MS.gene062327.t1.exon5;Parent=MS.gene062327.t1 |
| chr5.1 | CDS | 73631898 | 73631981 | 73631898 | ID=cds.MS.gene062327.t1;Parent=MS.gene062327.t1 |
| chr5.1 | exon | 73631507 | 73631671 | 73631507 | ID=MS.gene062327.t1.exon6;Parent=MS.gene062327.t1 |
| chr5.1 | CDS | 73631507 | 73631671 | 73631507 | ID=cds.MS.gene062327.t1;Parent=MS.gene062327.t1 |
| Gene Sequence |
| Protein sequence |
