Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063846.t1 | RHN58403.1 | 51.1 | 225 | 102 | 4 | 180 | 402 | 83 | 301 | 7.40E-54 | 221.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063846.t1 | O65278 | 28.5 | 123 | 87 | 1 | 177 | 298 | 127 | 249 | 2.9e-06 | 54.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063846.t1 | A0A072UFQ5 | 43.3 | 298 | 140 | 7 | 127 | 402 | 50 | 340 | 5.4e-54 | 221.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene063846 | 0.819566 | 1.09E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene063846 | 0.835765 | 1.39E-56 | -1.69E-46 |
| MS.gene050611 | MS.gene063846 | 0.803429 | 3.50E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene063846 | 0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene053512 | MS.gene063846 | 0.804854 | 1.77E-49 | -1.69E-46 |
| MS.gene053974 | MS.gene063846 | 0.817601 | 3.03E-52 | -1.69E-46 |
| MS.gene054174 | MS.gene063846 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene054175 | MS.gene063846 | 0.81012 | 1.35E-50 | -1.69E-46 |
| MS.gene05435 | MS.gene063846 | 0.815497 | 8.97E-52 | -1.69E-46 |
| MS.gene054484 | MS.gene063846 | 0.816806 | 4.57E-52 | -1.69E-46 |
| MS.gene055017 | MS.gene063846 | 0.821074 | 4.90E-53 | -1.69E-46 |
| MS.gene055056 | MS.gene063846 | 0.844945 | 5.52E-59 | -1.69E-46 |
| MS.gene055058 | MS.gene063846 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene05531 | MS.gene063846 | 0.81588 | 7.37E-52 | -1.69E-46 |
| MS.gene05762 | MS.gene063846 | 0.801917 | 7.18E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene063846 | 0.811727 | 6.06E-51 | -1.69E-46 |
| MS.gene058580 | MS.gene063846 | 0.832301 | 1.02E-55 | -1.69E-46 |
| MS.gene05925 | MS.gene063846 | 0.807945 | 3.94E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene063846 | 0.824606 | 7.37E-54 | -1.69E-46 |
| MS.gene059458 | MS.gene063846 | 0.825877 | 3.69E-54 | -1.69E-46 |
| MS.gene059459 | MS.gene063846 | 0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene059460 | MS.gene063846 | 0.81483 | 1.26E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene063846 | 0.815685 | 8.15E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063846.t1 | MTR_4g007830 | 46.792 | 265 | 107 | 7 | 163 | 402 | 85 | 340 | 1.64e-71 | 229 |
| MS.gene063846.t1 | MTR_8g089760 | 50.617 | 162 | 73 | 3 | 243 | 402 | 1 | 157 | 4.74e-49 | 164 |
| MS.gene063846.t1 | MTR_1g009820 | 57.143 | 98 | 38 | 1 | 319 | 416 | 1 | 94 | 9.28e-35 | 125 |
| MS.gene063846.t1 | MTR_5g022270 | 33.803 | 213 | 131 | 6 | 189 | 397 | 181 | 387 | 9.86e-28 | 115 |
| MS.gene063846.t1 | MTR_2g022080 | 33.333 | 213 | 132 | 6 | 189 | 397 | 181 | 387 | 1.42e-27 | 113 |
| MS.gene063846.t1 | MTR_4g040020 | 31.953 | 169 | 107 | 3 | 232 | 397 | 11 | 174 | 2.60e-25 | 102 |
| MS.gene063846.t1 | MTR_3g023970 | 26.222 | 225 | 142 | 10 | 189 | 403 | 315 | 525 | 8.66e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAACCAAAACACCTTTA+AGG | 0.137967 | 8.1:+62683536 | MS.gene063846:CDS |
| GGGTTATCGAAAGCGATTTA+TGG | 0.217435 | 8.1:+62684472 | MS.gene063846:CDS |
| TCAAGTTTCAAATCAACTTA+TGG | 0.227227 | 8.1:+62684875 | MS.gene063846:CDS |
| GTATCTAATTTGTACCTTAA+AGG | 0.243883 | 8.1:-62683550 | None:intergenic |
| AACCAATATTTAGGATAAAA+TGG | 0.269706 | 8.1:-62684153 | None:intergenic |
| ATTGTTTCAGGTAATTGATT+TGG | 0.299049 | 8.1:+62684092 | MS.gene063846:intron |
| AATTGCTCATGTCGAAAGTT+TGG | 0.300899 | 8.1:+62683384 | MS.gene063846:CDS |
| TAGGAATGATTGTGCGATTT+GGG | 0.304560 | 8.1:+62685067 | MS.gene063846:intron |
| TAATCAAACAAATGAGGATT+TGG | 0.312634 | 8.1:+62682825 | MS.gene063846:CDS |
| TTTCATGGAAAACTTGTTGA+TGG | 0.314872 | 8.1:+62684829 | MS.gene063846:CDS |
| ATCAAATGGATGATGGAAAA+AGG | 0.314997 | 8.1:+62685092 | MS.gene063846:CDS |
| GTCGGAATAAACCAATATTT+AGG | 0.320561 | 8.1:-62684162 | None:intergenic |
| AAATCCTCATTTGTTTGATT+AGG | 0.320853 | 8.1:-62682823 | None:intergenic |
| CTTGATACTTGTCTTCCTCT+TGG | 0.328648 | 8.1:-62684709 | None:intergenic |
| CTACTAAAACATTACCTCAT+AGG | 0.337049 | 8.1:-62682872 | None:intergenic |
| TTAGGAATGATTGTGCGATT+TGG | 0.345924 | 8.1:+62685066 | MS.gene063846:intron |
| GAAGACAAGTATCAAGAAAA+TGG | 0.346177 | 8.1:+62684716 | MS.gene063846:CDS |
| GGTTATCGAAAGCGATTTAT+GGG | 0.356200 | 8.1:+62684473 | MS.gene063846:CDS |
| TTTGTACCTTAAAGGTGTTT+TGG | 0.363339 | 8.1:-62683542 | None:intergenic |
| CTGCACAAAATCAGAGTGTT+AGG | 0.365999 | 8.1:+62683476 | MS.gene063846:CDS |
| TGACATCGGCAGAAAGGAAT+TGG | 0.366356 | 8.1:+62684650 | MS.gene063846:CDS |
| GTTAGCACAAAGGATGAAAA+TGG | 0.367000 | 8.1:+62683276 | MS.gene063846:CDS |
| TTGATACTTGTCTTCCTCTT+GGG | 0.380492 | 8.1:-62684708 | None:intergenic |
| GGATTTGATCTTGCGGAATT+CGG | 0.384621 | 8.1:+62685291 | MS.gene063846:CDS |
| AAATTCTGTAATAGTGTTAT+CGG | 0.391323 | 8.1:+62682675 | MS.gene063846:CDS |
| ATCATCGTCAATAAATTTGT+TGG | 0.391722 | 8.1:-62683983 | None:intergenic |
| GTTTATTCCGACCACATTAT+CGG | 0.391757 | 8.1:+62684173 | MS.gene063846:CDS |
| ACAATCTGTAGATCAAATAA+AGG | 0.392762 | 8.1:+62683324 | MS.gene063846:CDS |
| TACTAAAACATTACCTCATA+GGG | 0.422736 | 8.1:-62682871 | None:intergenic |
| TGAGCAATTTGTGAGCGTTT+TGG | 0.431058 | 8.1:-62683370 | None:intergenic |
| TCATCGTCAATAAATTTGTT+GGG | 0.434932 | 8.1:-62683982 | None:intergenic |
| CGATACATGATACCGTTCAT+TGG | 0.450387 | 8.1:+62684613 | MS.gene063846:CDS |
| TTAGCAACTCATGTTGGCAT+TGG | 0.450453 | 8.1:+62684424 | MS.gene063846:intron |
| TAGGGGCACGAGCACCTCAT+TGG | 0.461629 | 8.1:-62682853 | None:intergenic |
| GTGCGATTTGGGTAATCAAA+TGG | 0.465432 | 8.1:+62685078 | MS.gene063846:CDS |
| ACAGAGATAGATTACGTTGA+AGG | 0.486255 | 8.1:+62683931 | MS.gene063846:CDS |
| AGGAAACTCTTCTCAACTAA+AGG | 0.490542 | 8.1:+62683496 | MS.gene063846:CDS |
| ATGGATCCCTCTTTCTATGT+GGG | 0.495254 | 8.1:+62684848 | MS.gene063846:CDS |
| TTTGTTGCTCCACGTGGTTA+CGG | 0.500598 | 8.1:+62684920 | MS.gene063846:CDS |
| GATGGATCCCTCTTTCTATG+TGG | 0.506410 | 8.1:+62684847 | MS.gene063846:CDS |
| AGGAACTAGGAAGTTGCTGC+AGG | 0.508385 | 8.1:+62683951 | MS.gene063846:CDS |
| CTGTAATAGTGTTATCGGAC+AGG | 0.508801 | 8.1:+62682680 | MS.gene063846:CDS |
| GCATCCTAATCAAACAAATG+AGG | 0.512763 | 8.1:+62682819 | MS.gene063846:CDS |
| TTGGGTAATCAAATGGATGA+TGG | 0.515751 | 8.1:+62685085 | MS.gene063846:CDS |
| CATAATTGACATCGGCAGAA+AGG | 0.522205 | 8.1:+62684644 | MS.gene063846:CDS |
| TAGATTACGTTGAAGGAACT+AGG | 0.550308 | 8.1:+62683938 | MS.gene063846:CDS |
| GATCCCTCTTTCTATGTGGG+TGG | 0.554391 | 8.1:+62684851 | MS.gene063846:CDS |
| TGAACCACCCACATAGAAAG+AGG | 0.556566 | 8.1:-62684855 | None:intergenic |
| TTACACTAACAGGTGGATGA+AGG | 0.560129 | 8.1:+62685214 | MS.gene063846:intron |
| GAGTGCTGAGTTTACTTCAA+AGG | 0.565594 | 8.1:+62684499 | MS.gene063846:CDS |
| CCACGTGGTTACGGAAGTCA+AGG | 0.569221 | 8.1:+62684929 | MS.gene063846:CDS |
| ATCGAAAGCGATTTATGGGG+GGG | 0.572674 | 8.1:+62684477 | MS.gene063846:CDS |
| TGCCGATGTCAATTATGAGA+AGG | 0.572917 | 8.1:-62684638 | None:intergenic |
| CAATGAACGGTATCATGTAT+CGG | 0.573628 | 8.1:-62684612 | None:intergenic |
| GAGGTGCTCGTGCCCCTATG+AGG | 0.581197 | 8.1:+62682858 | MS.gene063846:CDS |
| ATTTATTTAGCAACTCATGT+TGG | 0.589140 | 8.1:+62684418 | MS.gene063846:intron |
| TTAATAATTTACCGATAATG+TGG | 0.589365 | 8.1:-62684184 | None:intergenic |
| TTATCGAAAGCGATTTATGG+GGG | 0.592691 | 8.1:+62684475 | MS.gene063846:CDS |
| AAGGATGAAAATGGTAGAGA+CGG | 0.599188 | 8.1:+62683285 | MS.gene063846:CDS |
| TAATTTACCGATAATGTGGT+CGG | 0.599623 | 8.1:-62684180 | None:intergenic |
| TGGTGGAGATGAAACGGAAT+CGG | 0.606779 | 8.1:-62682605 | None:intergenic |
| TATCGAAAGCGATTTATGGG+GGG | 0.620517 | 8.1:+62684476 | MS.gene063846:CDS |
| AAAAGAGGGATTTGATCTTG+CGG | 0.622365 | 8.1:+62685284 | MS.gene063846:CDS |
| TTCCTTCTCATAATTGACAT+CGG | 0.629925 | 8.1:+62684636 | MS.gene063846:CDS |
| GGAACTAGGAAGTTGCTGCA+GGG | 0.630697 | 8.1:+62683952 | MS.gene063846:CDS |
| TCTTAATTGATGTAGGCAAG+AGG | 0.631666 | 8.1:+62683897 | MS.gene063846:intron |
| AGGATTTGGAATTTCCAATG+AGG | 0.632110 | 8.1:+62682839 | MS.gene063846:CDS |
| TTTGGTTACAATAATCGGAG+TGG | 0.642068 | 8.1:-62683524 | None:intergenic |
| GTTATCGAAAGCGATTTATG+GGG | 0.643499 | 8.1:+62684474 | MS.gene063846:CDS |
| TATGAGAAGGAACCAATGAA+CGG | 0.646603 | 8.1:-62684625 | None:intergenic |
| TTTAAGTTTGTTGCTCCACG+TGG | 0.650344 | 8.1:+62684914 | MS.gene063846:CDS |
| GTTCGTCAGCTCTTCCCAAG+AGG | 0.652918 | 8.1:+62684694 | MS.gene063846:CDS |
| GAACCACCCACATAGAAAGA+GGG | 0.662397 | 8.1:-62684854 | None:intergenic |
| CCTTGACTTCCGTAACCACG+TGG | 0.696038 | 8.1:-62684929 | None:intergenic |
| ACTAAAACATTACCTCATAG+GGG | 0.700508 | 8.1:-62682870 | None:intergenic |
| CACGTGGTTACGGAAGTCAA+GGG | 0.703622 | 8.1:+62684930 | MS.gene063846:CDS |
| TATGAGAAAGAACATAGACA+TGG | 0.713561 | 8.1:+62683445 | MS.gene063846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTCATAATTTTTTATTT+AGG | + | chr8.1:62685048-62685067 | MS.gene063846:intron | 10.0% |
| !! | ATATATATATATATCATGTG+TGG | + | chr8.1:62682990-62683009 | MS.gene063846:intron | 15.0% |
| !! | GAAAAAAAAACAAATATTCT+TGG | - | chr8.1:62683121-62683140 | None:intergenic | 15.0% |
| !! | TAATTAATCTTAATTGATGT+AGG | + | chr8.1:62683890-62683909 | MS.gene063846:intron | 15.0% |
| !! | AAATGATGAAGAATATAATC+TGG | + | chr8.1:62683733-62683752 | MS.gene063846:intron | 20.0% |
| !! | AAATTCTGTAATAGTGTTAT+CGG | + | chr8.1:62682675-62682694 | MS.gene063846:CDS | 20.0% |
| !! | AATTATATGGTTAATACCTT+TGG | - | chr8.1:62683622-62683641 | None:intergenic | 20.0% |
| !! | ATTTCTCTTTAAATTGTTTC+AGG | + | chr8.1:62684080-62684099 | MS.gene063846:intron | 20.0% |
| !! | GTAAAGAAACTACAATTATA+TGG | - | chr8.1:62683635-62683654 | None:intergenic | 20.0% |
| !! | TTAATAATTTACCGATAATG+TGG | - | chr8.1:62684187-62684206 | None:intergenic | 20.0% |
| !!! | AACCAATATTTAGGATAAAA+TGG | - | chr8.1:62684156-62684175 | None:intergenic | 20.0% |
| !!! | ATGTATCTAGTTTATAAATG+TGG | - | chr8.1:62684286-62684305 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAAACAACTTTTT+AGG | - | chr8.1:62684254-62684235 | None:intergenic | 20.0% |
| !!! | TTGTTATCATTTTGTTTTGA+TGG | - | chr8.1:62682628-62682647 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTCTTCATTCAA+AGG | - | chr8.1:62682658-62682677 | None:intergenic | 20.0% |
| !!! | TTTTTTATATCTTACGAGTT+TGG | - | chr8.1:62684956-62684975 | None:intergenic | 20.0% |
| ! | AAATCCTCATTTGTTTGATT+AGG | - | chr8.1:62682826-62682845 | None:intergenic | 25.0% |
| ! | ACAATCTGTAGATCAAATAA+AGG | + | chr8.1:62683324-62683343 | MS.gene063846:CDS | 25.0% |
| ! | ACCAACAGAAAAAATGATAA+AGG | + | chr8.1:62684451-62684470 | MS.gene063846:CDS | 25.0% |
| ! | ATCATCGTCAATAAATTTGT+TGG | - | chr8.1:62683986-62684005 | None:intergenic | 25.0% |
| ! | ATTTATTTAGCAACTCATGT+TGG | + | chr8.1:62684418-62684437 | MS.gene063846:intron | 25.0% |
| ! | CATAGCTATGTAGATAAAAA+GGG | - | chr8.1:62684558-62684577 | None:intergenic | 25.0% |
| ! | CCAACAGAAAAAATGATAAA+GGG | + | chr8.1:62684452-62684471 | MS.gene063846:CDS | 25.0% |
| ! | TAATCAAACAAATGAGGATT+TGG | + | chr8.1:62682825-62682844 | MS.gene063846:CDS | 25.0% |
| ! | TACAAATTAGATACCTCAAA+AGG | + | chr8.1:62683559-62683578 | MS.gene063846:intron | 25.0% |
| ! | TACTAAAACATTACCTCATA+GGG | - | chr8.1:62682874-62682893 | None:intergenic | 25.0% |
| ! | TCAAGTTTCAAATCAACTTA+TGG | + | chr8.1:62684875-62684894 | MS.gene063846:CDS | 25.0% |
| ! | TCATAGCTATGTAGATAAAA+AGG | - | chr8.1:62684559-62684578 | None:intergenic | 25.0% |
| ! | TTAAACAAAAATTCCAACAG+AGG | - | chr8.1:62683149-62683168 | None:intergenic | 25.0% |
| ! | TTATATGTTTGTTTATGCAG+TGG | + | chr8.1:62683672-62683691 | MS.gene063846:intron | 25.0% |
| !! | AAATCCCTCTTTTTATTGTA+AGG | - | chr8.1:62685277-62685296 | None:intergenic | 25.0% |
| !! | ATTGTTTCAGGTAATTGATT+TGG | + | chr8.1:62684092-62684111 | MS.gene063846:intron | 25.0% |
| !! | CACCATTTTATCCTAAATAT+TGG | + | chr8.1:62684151-62684170 | MS.gene063846:CDS | 25.0% |
| !! | GTATCTAATTTGTACCTTAA+AGG | - | chr8.1:62683553-62683572 | None:intergenic | 25.0% |
| !! | TCATCGTCAATAAATTTGTT+GGG | - | chr8.1:62683985-62684004 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr8.1:62684334-62684353 | MS.gene063846:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | chr8.1:62684353-62684334 | None:intergenic | 25.0% |
| !!! | ACATTTTTAGTCTCTTTTCA+TGG | + | chr8.1:62684814-62684833 | MS.gene063846:intron | 25.0% |
| !!! | ATTTTAATGTATGCTCATTG+TGG | + | chr8.1:62684385-62684404 | MS.gene063846:intron | 25.0% |
| !!! | CAGCTTTTTGATTATATTGA+TGG | - | chr8.1:62683775-62683794 | None:intergenic | 25.0% |
| !!! | TTATCATTTTGTTTTGATGG+TGG | - | chr8.1:62682625-62682644 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTTTTCCTCTGT+TGG | + | chr8.1:62683133-62683152 | MS.gene063846:intron | 25.0% |
| AATCTGGCAGTTTACATATT+TGG | + | chr8.1:62683749-62683768 | MS.gene063846:intron | 30.0% | |
| AATTGGAGCTAATATTCCAA+AGG | + | chr8.1:62683603-62683622 | MS.gene063846:intron | 30.0% | |
| ACTAAAACATTACCTCATAG+GGG | - | chr8.1:62682873-62682892 | None:intergenic | 30.0% | |
| CTACTAAAACATTACCTCAT+AGG | - | chr8.1:62682875-62682894 | None:intergenic | 30.0% | |
| GAAGACAAGTATCAAGAAAA+TGG | + | chr8.1:62684716-62684735 | MS.gene063846:CDS | 30.0% | |
| GATCTGTTAGCACAATTTAA+TGG | + | chr8.1:62683027-62683046 | MS.gene063846:intron | 30.0% | |
| GCATCCTTACAATAAAAAGA+GGG | + | chr8.1:62685270-62685289 | MS.gene063846:CDS | 30.0% | |
| GTCGGAATAAACCAATATTT+AGG | - | chr8.1:62684165-62684184 | None:intergenic | 30.0% | |
| TAATTTACCGATAATGTGGT+CGG | - | chr8.1:62684183-62684202 | None:intergenic | 30.0% | |
| TACATAAAAAATACTCCCTC+CGG | - | chr8.1:62684356-62684375 | None:intergenic | 30.0% | |
| TATGAGAAAGAACATAGACA+TGG | + | chr8.1:62683445-62683464 | MS.gene063846:CDS | 30.0% | |
| TGCATCCTTACAATAAAAAG+AGG | + | chr8.1:62685269-62685288 | MS.gene063846:CDS | 30.0% | |
| TTAATGATAAATACTCCCTC+CGG | + | chr8.1:62684203-62684222 | MS.gene063846:intron | 30.0% | |
| TTCCTTCTCATAATTGACAT+CGG | + | chr8.1:62684636-62684655 | MS.gene063846:CDS | 30.0% | |
| TTGTAACCAAAACACCTTTA+AGG | + | chr8.1:62683536-62683555 | MS.gene063846:CDS | 30.0% | |
| TTTACCACAATTACACTAAC+AGG | + | chr8.1:62685204-62685223 | MS.gene063846:intron | 30.0% | |
| ! | TTCATCATTTAACTTCAGTG+TGG | - | chr8.1:62683723-62683742 | None:intergenic | 30.0% |
| !! | AATTTAATGGTGGATTTGGT+AGG | + | chr8.1:62683040-62683059 | MS.gene063846:intron | 30.0% |
| !! | ATCAAATGGATGATGGAAAA+AGG | + | chr8.1:62685092-62685111 | MS.gene063846:CDS | 30.0% |
| !! | TTTAACTTCAGTGTGGTTTT+AGG | - | chr8.1:62683716-62683735 | None:intergenic | 30.0% |
| !! | TTTCATGGAAAACTTGTTGA+TGG | + | chr8.1:62684829-62684848 | MS.gene063846:CDS | 30.0% |
| !!! | AATTTTGCGAAAGTTTGCTA+AGG | + | chr8.1:62683411-62683430 | MS.gene063846:CDS | 30.0% |
| !!! | CACACTTCTTATTTTTACAG+AGG | + | chr8.1:62683254-62683273 | MS.gene063846:intron | 30.0% |
| !!! | CCCTTTATCATTTTTTCTGT+TGG | - | chr8.1:62684455-62684474 | None:intergenic | 30.0% |
| !!! | CTATGAGGTAATGTTTTAGT+AGG | + | chr8.1:62682873-62682892 | MS.gene063846:intron | 30.0% |
| !!! | CTTATGTCATTTTTTGTGTG+TGG | + | chr8.1:62682747-62682766 | MS.gene063846:intron | 30.0% |
| !!! | GGTGTTTTGGTTACAATAAT+CGG | - | chr8.1:62683532-62683551 | None:intergenic | 30.0% |
| !!! | TTTGTACCTTAAAGGTGTTT+TGG | - | chr8.1:62683545-62683564 | None:intergenic | 30.0% |
| AAAAGAGGGATTTGATCTTG+CGG | + | chr8.1:62685284-62685303 | MS.gene063846:CDS | 35.0% | |
| AAGGATGAAAATGGTAGAGA+CGG | + | chr8.1:62683285-62683304 | MS.gene063846:CDS | 35.0% | |
| AATTGCTCATGTCGAAAGTT+TGG | + | chr8.1:62683384-62683403 | MS.gene063846:CDS | 35.0% | |
| ACAGAGATAGATTACGTTGA+AGG | + | chr8.1:62683931-62683950 | MS.gene063846:CDS | 35.0% | |
| AGGAAACTCTTCTCAACTAA+AGG | + | chr8.1:62683496-62683515 | MS.gene063846:CDS | 35.0% | |
| ATTAGATACCTCAAAAGGCA+AGG | + | chr8.1:62683564-62683583 | MS.gene063846:intron | 35.0% | |
| CAATGAACGGTATCATGTAT+CGG | - | chr8.1:62684615-62684634 | None:intergenic | 35.0% | |
| CTGTTAGCACAATTTAATGG+TGG | + | chr8.1:62683030-62683049 | MS.gene063846:intron | 35.0% | |
| GAATCTCGCTCGAAATTAAT+TGG | + | chr8.1:62683586-62683605 | MS.gene063846:intron | 35.0% | |
| GCATCCTAATCAAACAAATG+AGG | + | chr8.1:62682819-62682838 | MS.gene063846:CDS | 35.0% | |
| GGTTATCGAAAGCGATTTAT+GGG | + | chr8.1:62684473-62684492 | MS.gene063846:CDS | 35.0% | |
| GTTAGCACAAAGGATGAAAA+TGG | + | chr8.1:62683276-62683295 | MS.gene063846:CDS | 35.0% | |
| GTTATCGAAAGCGATTTATG+GGG | + | chr8.1:62684474-62684493 | MS.gene063846:CDS | 35.0% | |
| GTTTATTCCGACCACATTAT+CGG | + | chr8.1:62684173-62684192 | MS.gene063846:CDS | 35.0% | |
| TAGATTACGTTGAAGGAACT+AGG | + | chr8.1:62683938-62683957 | MS.gene063846:CDS | 35.0% | |
| TAGGAATGATTGTGCGATTT+GGG | + | chr8.1:62685067-62685086 | MS.gene063846:intron | 35.0% | |
| TATGAGAAGGAACCAATGAA+CGG | - | chr8.1:62684628-62684647 | None:intergenic | 35.0% | |
| TCTTAATTGATGTAGGCAAG+AGG | + | chr8.1:62683897-62683916 | MS.gene063846:intron | 35.0% | |
| TTAGGAATGATTGTGCGATT+TGG | + | chr8.1:62685066-62685085 | MS.gene063846:intron | 35.0% | |
| TTATCGAAAGCGATTTATGG+GGG | + | chr8.1:62684475-62684494 | MS.gene063846:CDS | 35.0% | |
| TTGATACTTGTCTTCCTCTT+GGG | - | chr8.1:62684711-62684730 | None:intergenic | 35.0% | |
| TTGGGTAATCAAATGGATGA+TGG | + | chr8.1:62685085-62685104 | MS.gene063846:CDS | 35.0% | |
| TTTGGTTACAATAATCGGAG+TGG | - | chr8.1:62683527-62683546 | None:intergenic | 35.0% | |
| ! | AGGATTTGGAATTTCCAATG+AGG | + | chr8.1:62682839-62682858 | MS.gene063846:CDS | 35.0% |
| ! | ATCATGTGTGGATTGCTTAA+TGG | + | chr8.1:62683002-62683021 | MS.gene063846:intron | 35.0% |
| ! | TTTTACAGAGGTTAGCACAA+AGG | + | chr8.1:62683266-62683285 | MS.gene063846:intron | 35.0% |
| !! | GCACAATTTAATGGTGGATT+TGG | + | chr8.1:62683036-62683055 | MS.gene063846:intron | 35.0% |
| !!! | ATGTCATTTTTTGTGTGTGG+TGG | + | chr8.1:62682750-62682769 | MS.gene063846:intron | 35.0% |
| !!! | TTTTGATGGTGGAGATGAAA+CGG | - | chr8.1:62682614-62682633 | None:intergenic | 35.0% |
| ACCACAATTACACTAACAGG+TGG | + | chr8.1:62685207-62685226 | MS.gene063846:intron | 40.0% | |
| ATGGATCCCTCTTTCTATGT+GGG | + | chr8.1:62684848-62684867 | MS.gene063846:CDS | 40.0% | |
| CATAATTGACATCGGCAGAA+AGG | + | chr8.1:62684644-62684663 | MS.gene063846:CDS | 40.0% | |
| CGATACATGATACCGTTCAT+TGG | + | chr8.1:62684613-62684632 | MS.gene063846:CDS | 40.0% | |
| CTGTAATAGTGTTATCGGAC+AGG | + | chr8.1:62682680-62682699 | MS.gene063846:CDS | 40.0% | |
| CTTGATACTTGTCTTCCTCT+TGG | - | chr8.1:62684712-62684731 | None:intergenic | 40.0% | |
| GGATTTGATCTTGCGGAATT+CGG | + | chr8.1:62685291-62685310 | MS.gene063846:CDS | 40.0% | |
| GGGTTATCGAAAGCGATTTA+TGG | + | chr8.1:62684472-62684491 | MS.gene063846:CDS | 40.0% | |
| TATCGAAAGCGATTTATGGG+GGG | + | chr8.1:62684476-62684495 | MS.gene063846:CDS | 40.0% | |
| TCCACCTGTTAGTGTAATTG+TGG | - | chr8.1:62685211-62685230 | None:intergenic | 40.0% | |
| TGCCGATGTCAATTATGAGA+AGG | - | chr8.1:62684641-62684660 | None:intergenic | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | chr8.1:62684338-62684357 | MS.gene063846:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr8.1:62684357-62684338 | None:intergenic | 40.0% | |
| TTACACTAACAGGTGGATGA+AGG | + | chr8.1:62685214-62685233 | MS.gene063846:intron | 40.0% | |
| TTAGCAACTCATGTTGGCAT+TGG | + | chr8.1:62684424-62684443 | MS.gene063846:intron | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | chr8.1:62684337-62684356 | MS.gene063846:intron | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr8.1:62684356-62684337 | None:intergenic | 40.0% | |
| ! | CTGCACAAAATCAGAGTGTT+AGG | + | chr8.1:62683476-62683495 | MS.gene063846:CDS | 40.0% |
| ! | GATTTGGTAGGAACTAATGG+TGG | + | chr8.1:62683052-62683071 | MS.gene063846:intron | 40.0% |
| ! | GTGCGATTTGGGTAATCAAA+TGG | + | chr8.1:62685078-62685097 | MS.gene063846:CDS | 40.0% |
| ! | GTGGATTTGGTAGGAACTAA+TGG | + | chr8.1:62683049-62683068 | MS.gene063846:intron | 40.0% |
| ! | TGAGCAATTTGTGAGCGTTT+TGG | - | chr8.1:62683373-62683392 | None:intergenic | 40.0% |
| !! | GAGTGCTGAGTTTACTTCAA+AGG | + | chr8.1:62684499-62684518 | MS.gene063846:CDS | 40.0% |
| !! | TTTAAGTTTGTTGCTCCACG+TGG | + | chr8.1:62684914-62684933 | MS.gene063846:CDS | 40.0% |
| ATCGAAAGCGATTTATGGGG+GGG | + | chr8.1:62684477-62684496 | MS.gene063846:CDS | 45.0% | |
| GAACCACCCACATAGAAAGA+GGG | - | chr8.1:62684857-62684876 | None:intergenic | 45.0% | |
| GATGGATCCCTCTTTCTATG+TGG | + | chr8.1:62684847-62684866 | MS.gene063846:CDS | 45.0% | |
| TGAACCACCCACATAGAAAG+AGG | - | chr8.1:62684858-62684877 | None:intergenic | 45.0% | |
| TGACATCGGCAGAAAGGAAT+TGG | + | chr8.1:62684650-62684669 | MS.gene063846:CDS | 45.0% | |
| TGGTGGAGATGAAACGGAAT+CGG | - | chr8.1:62682608-62682627 | None:intergenic | 45.0% | |
| TTTGTTGCTCCACGTGGTTA+CGG | + | chr8.1:62684920-62684939 | MS.gene063846:CDS | 45.0% | |
| !! | TAAATAACAATTAAAATAAA+AGG | + | chr8.1:62683184-62683203 | MS.gene063846:intron | 5.0% |
| !!! | TAAATATTATCTTATTTTAT+AGG | + | chr8.1:62683850-62683869 | MS.gene063846:intron | 5.0% |
| AGGAACTAGGAAGTTGCTGC+AGG | + | chr8.1:62683951-62683970 | MS.gene063846:CDS | 50.0% | |
| CACGTGGTTACGGAAGTCAA+GGG | + | chr8.1:62684930-62684949 | MS.gene063846:CDS | 50.0% | |
| GATCCCTCTTTCTATGTGGG+TGG | + | chr8.1:62684851-62684870 | MS.gene063846:CDS | 50.0% | |
| GGAACTAGGAAGTTGCTGCA+GGG | + | chr8.1:62683952-62683971 | MS.gene063846:CDS | 50.0% | |
| ! | GCGAGATTCCTTGCCTTTTG+AGG | - | chr8.1:62683575-62683594 | None:intergenic | 50.0% |
| CCACGTGGTTACGGAAGTCA+AGG | + | chr8.1:62684929-62684948 | MS.gene063846:CDS | 55.0% | |
| CCTTGACTTCCGTAACCACG+TGG | - | chr8.1:62684932-62684951 | None:intergenic | 55.0% | |
| GTTCGTCAGCTCTTCCCAAG+AGG | + | chr8.1:62684694-62684713 | MS.gene063846:CDS | 55.0% | |
| ! | TAGGGGCACGAGCACCTCAT+TGG | - | chr8.1:62682856-62682875 | None:intergenic | 60.0% |
| ! | GAGGTGCTCGTGCCCCTATG+AGG | + | chr8.1:62682858-62682877 | MS.gene063846:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 62682556 | 62685327 | 62682556 | ID=MS.gene063846 |
| chr8.1 | mRNA | 62682556 | 62685327 | 62682556 | ID=MS.gene063846.t1;Parent=MS.gene063846 |
| chr8.1 | exon | 62682556 | 62682701 | 62682556 | ID=MS.gene063846.t1.exon1;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62682556 | 62682701 | 62682556 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62682780 | 62682879 | 62682780 | ID=MS.gene063846.t1.exon2;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62682780 | 62682879 | 62682780 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62683274 | 62683557 | 62683274 | ID=MS.gene063846.t1.exon3;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62683274 | 62683557 | 62683274 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62683912 | 62684005 | 62683912 | ID=MS.gene063846.t1.exon4;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62683912 | 62684005 | 62683912 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62684102 | 62684194 | 62684102 | ID=MS.gene063846.t1.exon5;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62684102 | 62684194 | 62684102 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62684428 | 62684520 | 62684428 | ID=MS.gene063846.t1.exon6;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62684428 | 62684520 | 62684428 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62684603 | 62684737 | 62684603 | ID=MS.gene063846.t1.exon7;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62684603 | 62684737 | 62684603 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62684824 | 62684960 | 62684824 | ID=MS.gene063846.t1.exon8;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62684824 | 62684960 | 62684824 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62685070 | 62685136 | 62685070 | ID=MS.gene063846.t1.exon9;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62685070 | 62685136 | 62685070 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| chr8.1 | exon | 62685226 | 62685327 | 62685226 | ID=MS.gene063846.t1.exon10;Parent=MS.gene063846.t1 |
| chr8.1 | CDS | 62685226 | 62685327 | 62685226 | ID=cds.MS.gene063846.t1;Parent=MS.gene063846.t1 |
| Gene Sequence |
| Protein sequence |
