AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063856


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063856.t1 MTR_8g041570 95.994 624 24 1 1 623 1 624 0.0 1198
MS.gene063856.t1 MTR_5g088750 38.519 675 314 19 18 621 17 661 1.07e-114 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063856.t1 AT2G26920 35.757 674 309 24 18 619 22 643 9.10e-83 273
MS.gene063856.t1 AT5G12120 51.128 266 112 5 1 256 1 258 9.32e-70 238

Find 147 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAATATTCCCATGTATT+TGG 0.095875 8.1:-62409884 MS.gene063856:CDS
AGGAAAGGTAACAAACTTTC+TGG 0.245346 8.1:+62409382 None:intergenic
ACATGGGAATATTCTTTATA+AGG 0.275764 8.1:+62409890 None:intergenic
TCTAATAACGGCAGTTGTTC+TGG 0.279190 8.1:-62410973 MS.gene063856:CDS
TGTTCCATGATCCTGAAAAT+AGG 0.320132 8.1:-62410312 MS.gene063856:CDS
AAGAATATTCCCATGTATTT+GGG 0.321676 8.1:-62409883 MS.gene063856:CDS
TTGGCTGTTGTCATTAACTA+TGG 0.321935 8.1:+62411068 None:intergenic
TTAGTAGATCCGGAAGTCTT+TGG 0.322942 8.1:+62411153 None:intergenic
CTCTCCTTTCCCTCTGTCTC+TGG 0.344034 8.1:+62410836 None:intergenic
CGTCTGCTGGATTGCGAGAT+TGG 0.349620 8.1:-62409442 MS.gene063856:CDS
ATGGATTGTAACATATTAGA+AGG 0.352212 8.1:+62410211 None:intergenic
TCGAGATCGCACGCACTAGA+AGG 0.367011 8.1:+62411114 None:intergenic
AACATATTAGAAGGATTTGA+TGG 0.388055 8.1:+62410220 None:intergenic
CTTACAGTTCCACCTTCCCT+TGG 0.389072 8.1:-62409719 MS.gene063856:CDS
TCTATGAATTCCATACCTTC+TGG 0.389904 8.1:-62410040 MS.gene063856:CDS
AGGCACAGCCGAGTGCCTTT+AGG 0.397963 8.1:-62410159 MS.gene063856:CDS
TGAGAATGAGAAGGCATTGT+AGG 0.407581 8.1:+62409788 None:intergenic
TATGATTCTGTTTCTAATAA+CGG 0.410813 8.1:-62410985 MS.gene063856:CDS
TCACATGTGGATTGGAATAC+CGG 0.413944 8.1:-62409647 MS.gene063856:CDS
GTTAATGACAACAGCCAATT+CGG 0.418306 8.1:-62411063 MS.gene063856:CDS
TGCAGCCTTCGCCTTCGACT+TGG 0.424604 8.1:+62411197 None:intergenic
AATGTCACCGTATGTTAAAA+TGG 0.428913 8.1:-62410182 MS.gene063856:CDS
TAATAGTTCGATGAGATCTC+AGG 0.433345 8.1:-62410419 MS.gene063856:CDS
CGGCAGTTGTTCTGGTGAAT+CGG 0.434328 8.1:-62410965 MS.gene063856:CDS
TTACAGTTCCACCTTCCCTT+GGG 0.436626 8.1:-62409718 MS.gene063856:CDS
TAGCCATACATCACCTGATC+TGG 0.442603 8.1:+62409562 None:intergenic
TTGGTATGTAAATAGTGTTC+CGG 0.444465 8.1:-62410008 MS.gene063856:CDS
GCTTGAACAAATTTATGCTC+TGG 0.448008 8.1:-62410581 MS.gene063856:CDS
CGATCCAGTCATATAAGAAC+TGG 0.453454 8.1:+62409496 None:intergenic
TGCTCGTCGGCATCCAGATC+AGG 0.454135 8.1:-62409575 MS.gene063856:CDS
ATGAACTGACACAGAAAAGA+TGG 0.455206 8.1:-62410258 MS.gene063856:CDS
TCAAATTACCATCGCTTACA+AGG 0.456736 8.1:+62410623 None:intergenic
CAAAGCCAACGTTGCTCGCT+CGG 0.460956 8.1:+62410723 None:intergenic
TTCAATCTCATCAGGTGGAA+TGG 0.464377 8.1:-62409849 MS.gene063856:CDS
AAGACTTCTCCAAAGACTTC+CGG 0.464853 8.1:-62411162 MS.gene063856:CDS
TCGACTACAACAATATAGAT+TGG 0.471505 8.1:-62409607 MS.gene063856:CDS
CATCCAGATCAGGTGATGTA+TGG 0.472343 8.1:-62409565 MS.gene063856:CDS
TCAATCTCATCAGGTGGAAT+GGG 0.472852 8.1:-62409848 MS.gene063856:CDS
AGGGAAATTTCATCGTCTGC+TGG 0.474158 8.1:-62409455 MS.gene063856:CDS
AATCTGCCGGCCCAAATACA+TGG 0.476192 8.1:+62409873 None:intergenic
CATTCTTCCGTCGTTCCTAA+AGG 0.476672 8.1:+62410144 None:intergenic
TCAAGGAGTAGGAAGGGAAC+AGG 0.480070 8.1:-62410116 MS.gene063856:CDS
ATACGGTGACATTGCTTGCA+TGG 0.482137 8.1:+62410192 None:intergenic
AAAACTTGTGCAGAAGTTAG+TGG 0.483211 8.1:-62410761 MS.gene063856:CDS
GCAGATTCTTCAATCTCATC+AGG 0.484175 8.1:-62409857 MS.gene063856:CDS
GCTCTCATCATTAGTAGATC+CGG 0.484784 8.1:+62411143 None:intergenic
GCTCACATTCACATGTGGAT+TGG 0.485955 8.1:-62409655 MS.gene063856:CDS
GAAGGTGGAACTGTAAGTGC+AGG 0.489811 8.1:+62409725 None:intergenic
CACATGTGGATTGGAATACC+GGG 0.491320 8.1:-62409646 MS.gene063856:CDS
ACGAAAATACAAGGTCGAAT+GGG 0.496043 8.1:-62409982 MS.gene063856:CDS
TTCCGTGAGCCGTGATGTTG+AGG 0.498017 8.1:+62409764 None:intergenic
ACTAGATGTTCCAGAAGGTA+TGG 0.500862 8.1:+62410030 None:intergenic
GCTTCCTCTCATTCTTCAGT+CGG 0.502524 8.1:+62410860 None:intergenic
AGGAAGAATCTCATTTGAAT+CGG 0.506944 8.1:-62410462 MS.gene063856:CDS
GGAAAGGTAACAAACTTTCT+GGG 0.507017 8.1:+62409383 None:intergenic
AATATGTCCTTCCCAGCAAA+AGG 0.507323 8.1:+62409413 None:intergenic
TACCTTCTGGAACATCTAGT+TGG 0.508910 8.1:-62410027 MS.gene063856:CDS
TGTGCAGAAGTTAGTGGCGA+TGG 0.510221 8.1:-62410755 MS.gene063856:CDS
CTGTGAAGGTGATCTTCAAA+AGG 0.517565 8.1:-62410509 MS.gene063856:CDS
ATGGCCAGTTCTTATATGAC+TGG 0.522911 8.1:-62409500 MS.gene063856:CDS
AGCACCAGAGACAGAGGGAA+AGG 0.524230 8.1:-62410840 MS.gene063856:CDS
ATTACCATCGCTTACAAGGT+TGG 0.525468 8.1:+62410627 None:intergenic
TACGAAAATACAAGGTCGAA+TGG 0.529380 8.1:-62409983 MS.gene063856:CDS
ACCCTCAACATCACGGCTCA+CGG 0.530298 8.1:-62409766 MS.gene063856:CDS
TTATGATCCAATTACTACAT+AGG 0.534908 8.1:+62409359 None:intergenic
GTGCGATCTCGAAACATCAT+TGG 0.535814 8.1:-62411103 MS.gene063856:CDS
TCGATATCGTGGCTATTTGA+AGG 0.535817 8.1:-62410673 MS.gene063856:CDS
ACTCGGTTGGAATTTATACC+TGG 0.536492 8.1:-62410910 MS.gene063856:CDS
CAAAAGAGCCCAAGGGAAGG+TGG 0.537570 8.1:+62409710 None:intergenic
ATGACTGGATCGCGAAATGT+TGG 0.538183 8.1:-62409485 MS.gene063856:CDS
TGAGAAGGCATTGTAGGTGA+AGG 0.542455 8.1:+62409794 None:intergenic
TGAACTGACACAGAAAAGAT+GGG 0.548313 8.1:-62410257 MS.gene063856:CDS
GTCGAAGGCGAAGGCTGCAA+AGG 0.548842 8.1:-62411193 MS.gene063856:CDS
ATATTCCCATGTATTTGGGC+CGG 0.551558 8.1:-62409879 MS.gene063856:CDS
GTGCAGAAGTTAGTGGCGAT+GGG 0.551834 8.1:-62410754 MS.gene063856:CDS
ATCTCATCAGGTGGAATGGG+AGG 0.552551 8.1:-62409845 MS.gene063856:CDS
TGCAAACTCATCTACTCGGT+TGG 0.552784 8.1:-62410923 MS.gene063856:CDS
ACTACTACAAAATCATGGCA+TGG 0.554523 8.1:-62409954 MS.gene063856:CDS
AATTTACTACTACAAAATCA+TGG 0.562396 8.1:-62409959 MS.gene063856:CDS
AATCATGGCATGGGAAATGT+CGG 0.563598 8.1:-62409944 MS.gene063856:CDS
TGTTTGGCATCGGCGAATTG+TGG 0.563782 8.1:+62410076 None:intergenic
CTACTACAAAATCATGGCAT+GGG 0.564200 8.1:-62409953 MS.gene063856:CDS
CACTACCGAGCGAGCAACGT+TGG 0.564651 8.1:-62410728 MS.gene063856:CDS
ATCTGCCGGCCCAAATACAT+GGG 0.568471 8.1:+62409874 None:intergenic
AGAATGATTCATCAAGGAGT+AGG 0.573842 8.1:-62410127 MS.gene063856:CDS
GATCATTCTATTAGTCCTCA+AGG 0.577446 8.1:-62411021 MS.gene063856:CDS
GAATTCTTGCACCATGCCCC+CGG 0.581487 8.1:+62409628 None:intergenic
CTGGTTGTGATAACGACAGA+AGG 0.581636 8.1:-62410891 MS.gene063856:CDS
TCCGTGAGCCGTGATGTTGA+GGG 0.582113 8.1:+62409765 None:intergenic
TTCTATTAGTCCTCAAGGAA+CGG 0.582220 8.1:-62411016 MS.gene063856:CDS
GAGCTTGAGAAAGTTGCTGC+AGG 0.584773 8.1:+62409912 None:intergenic
TGATTCATCAAGGAGTAGGA+AGG 0.585649 8.1:-62410123 MS.gene063856:CDS
AGAGGAAGCACCAGAGACAG+AGG 0.586818 8.1:-62410846 MS.gene063856:CDS
AGATCAGGTGATGTATGGCT+AGG 0.589748 8.1:-62409560 MS.gene063856:CDS
AAAATCCAAGTCGAAGGCGA+AGG 0.590839 8.1:-62411202 MS.gene063856:CDS
TTGCGGTCATCAGAATCCAT+CGG 0.592019 8.1:-62409690 MS.gene063856:CDS
GATGAGATTGAAGAATCTGC+CGG 0.594518 8.1:+62409860 None:intergenic
CAGTATCAATACAGCAGAGA+GGG 0.594892 8.1:-62410381 MS.gene063856:CDS
GGGAGGTTTCTATAAACCGA+TGG 0.598021 8.1:-62409828 MS.gene063856:CDS
CCGTCGTTCCTAAAGGCACT+CGG 0.598969 8.1:+62410151 None:intergenic
GAAATCAAAATCCAAGTCGA+AGG 0.599824 8.1:-62411208 MS.gene063856:CDS
GATGACCGCAAAAGAGCCCA+AGG 0.600284 8.1:+62409702 None:intergenic
AATAGTTCGATGAGATCTCA+GGG 0.600975 8.1:-62410418 MS.gene063856:CDS
AAGCACGTTAAAATCTCAGA+AGG 0.602359 8.1:-62410482 MS.gene063856:CDS
TTCCGGCATACGAAAATACA+AGG 0.602463 8.1:-62409991 MS.gene063856:CDS
GACGGAAGAATGATTCATCA+AGG 0.604217 8.1:-62410133 MS.gene063856:CDS
CGATTCAAGTGTAGAGACTG+TGG 0.605833 8.1:+62410286 None:intergenic
CTTCTGTCGTTATCACAACC+AGG 0.608348 8.1:+62410892 None:intergenic
GATTCATCAAGGAGTAGGAA+GGG 0.611644 8.1:-62410122 MS.gene063856:CDS
AAGGTGGAACTGTAAGTGCA+GGG 0.611990 8.1:+62409726 None:intergenic
TGATCCAATTACTACATAGG+AGG 0.615657 8.1:+62409362 None:intergenic
TGAATGTGAGCTGAATGATC+TGG 0.619752 8.1:+62409667 None:intergenic
CGCGAAATGTTGGCACAGCG+AGG 0.619774 8.1:-62409475 MS.gene063856:CDS
GAAGGTGACGATGCAACCAT+CGG 0.620053 8.1:+62409812 None:intergenic
AAACAGCGCTGGGAATAGGA+TGG 0.623093 8.1:-62409519 MS.gene063856:CDS
CAATTACTACATAGGAGGAA+AGG 0.626141 8.1:+62409367 None:intergenic
AGAGCAGTTGTTGCCTGTGA+AGG 0.626472 8.1:-62410523 MS.gene063856:CDS
GAGCTGAATGATCTGGCCGA+TGG 0.626913 8.1:+62409674 None:intergenic
GCGAAATGTTGGCACAGCGA+GGG 0.629324 8.1:-62409474 MS.gene063856:CDS
CATTCTCACCCTCAACATCA+CGG 0.630194 8.1:-62409773 MS.gene063856:CDS
ACTACCAACCTTGTAAGCGA+TGG 0.630386 8.1:-62410631 MS.gene063856:CDS
GATTCTTCAATCTCATCAGG+TGG 0.630854 8.1:-62409854 MS.gene063856:CDS
ATTCAGCTCACATTCACATG+TGG 0.630960 8.1:-62409660 MS.gene063856:CDS
TGCTGTATTGATACTGACGC+TGG 0.632713 8.1:+62410388 None:intergenic
AGATCCGACTGAAGAATGAG+AGG 0.634680 8.1:-62410864 MS.gene063856:CDS
TTGGAGTTTAGATTGCTCGT+CGG 0.636464 8.1:-62409588 MS.gene063856:CDS
GAGGAAGCACCAGAGACAGA+GGG 0.640584 8.1:-62410845 MS.gene063856:CDS
TACTCAGACACCGTTCCTTG+AGG 0.642758 8.1:+62411006 None:intergenic
AATTAGAAGAATCGATATCG+TGG 0.648950 8.1:-62410684 MS.gene063856:CDS
TGGTTGTGATAACGACAGAA+GGG 0.649400 8.1:-62410890 MS.gene063856:CDS
CCGCAAAAGAGCCCAAGGGA+AGG 0.656859 8.1:+62409707 None:intergenic
AAGCTGCAAACTCATCTACT+CGG 0.657093 8.1:-62410927 MS.gene063856:CDS
GTCCTTCCCAGCAAAAGGTG+AGG 0.666833 8.1:+62409418 None:intergenic
TGTTGAGGGTGAGAATGAGA+AGG 0.667009 8.1:+62409779 None:intergenic
CCGAGTGCCTTTAGGAACGA+CGG 0.668148 8.1:-62410151 MS.gene063856:CDS
ATATCGTGGCTATTTGAAGG+AGG 0.676954 8.1:-62410670 MS.gene063856:CDS
AAGTGCAGGGGAAGATGCAG+CGG 0.677500 8.1:+62409739 None:intergenic
TACCAACTAGATGTTCCAGA+AGG 0.679667 8.1:+62410025 None:intergenic
AGGTGGAACTGTAAGTGCAG+GGG 0.680688 8.1:+62409727 None:intergenic
TTCAACTATTACAATGTACG+TGG 0.683105 8.1:-62410346 MS.gene063856:CDS
ACATGTGGATTGGAATACCG+GGG 0.687769 8.1:-62409645 MS.gene063856:CDS
TTGGCTTTGAAGTTAAACAA+CGG 0.688283 8.1:-62410709 MS.gene063856:CDS
GAACTGACACAGAAAAGATG+GGG 0.693814 8.1:-62410256 MS.gene063856:CDS
GTCACCGTATGTTAAAATGG+AGG 0.695807 8.1:-62410179 MS.gene063856:CDS
TCAGTATCAATACAGCAGAG+AGG 0.701867 8.1:-62410382 MS.gene063856:CDS
CATGTGGATTGGAATACCGG+GGG 0.716378 8.1:-62409644 MS.gene063856:CDS
ATGACCGCAAAAGAGCCCAA+GGG 0.718537 8.1:+62409703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTACTACTACAAAATCA+TGG - chr8.1:62410636-62410655 MS.gene063856:CDS 20.0%
!!! AGAATTCAGATAATTTTGTT+TGG + chr8.1:62410538-62410557 None:intergenic 20.0%
!!! TATGATTCTGTTTCTAATAA+CGG - chr8.1:62409610-62409629 MS.gene063856:CDS 20.0%
!!! TTTCATTTATTTTTCCGAAT+TGG + chr8.1:62409549-62409568 None:intergenic 20.0%
! AAAGAATATTCCCATGTATT+TGG - chr8.1:62410711-62410730 MS.gene063856:CDS 25.0%
! AACATATTAGAAGGATTTGA+TGG + chr8.1:62410378-62410397 None:intergenic 25.0%
! AAGAATATTCCCATGTATTT+GGG - chr8.1:62410712-62410731 MS.gene063856:CDS 25.0%
! ACATGGGAATATTCTTTATA+AGG + chr8.1:62410708-62410727 None:intergenic 25.0%
!! ATGGATTGTAACATATTAGA+AGG + chr8.1:62410387-62410406 None:intergenic 25.0%
!!! TTGGATTTTGATTTCATTGA+TGG + chr8.1:62409382-62409401 None:intergenic 25.0%
AATGTCACCGTATGTTAAAA+TGG - chr8.1:62410413-62410432 MS.gene063856:CDS 30.0%
AATTAGAAGAATCGATATCG+TGG - chr8.1:62409911-62409930 MS.gene063856:CDS 30.0%
AGGAAGAATCTCATTTGAAT+CGG - chr8.1:62410133-62410152 MS.gene063856:CDS 30.0%
TCGACTACAACAATATAGAT+TGG - chr8.1:62410988-62411007 MS.gene063856:CDS 30.0%
TTCAACTATTACAATGTACG+TGG - chr8.1:62410249-62410268 MS.gene063856:CDS 30.0%
TTGGTATGTAAATAGTGTTC+CGG - chr8.1:62410587-62410606 MS.gene063856:CDS 30.0%
!! CAGATAATTTTGTTTGGCAT+CGG + chr8.1:62410532-62410551 None:intergenic 30.0%
!! TTGGCTTTGAAGTTAAACAA+CGG - chr8.1:62409886-62409905 MS.gene063856:CDS 30.0%
AAAACTTGTGCAGAAGTTAG+TGG - chr8.1:62409834-62409853 MS.gene063856:CDS 35.0%
AAGCACGTTAAAATCTCAGA+AGG - chr8.1:62410113-62410132 MS.gene063856:CDS 35.0%
AATAGTTCGATGAGATCTCA+GGG - chr8.1:62410177-62410196 MS.gene063856:CDS 35.0%
ACGAAAATACAAGGTCGAAT+GGG - chr8.1:62410613-62410632 MS.gene063856:CDS 35.0%
ACTACTACAAAATCATGGCA+TGG - chr8.1:62410641-62410660 MS.gene063856:CDS 35.0%
AGAATGATTCATCAAGGAGT+AGG - chr8.1:62410468-62410487 MS.gene063856:CDS 35.0%
AGGAAAGGTAACAAACTTTC+TGG + chr8.1:62411216-62411235 None:intergenic 35.0%
ATGAACTGACACAGAAAAGA+TGG - chr8.1:62410337-62410356 MS.gene063856:CDS 35.0%
CTACTACAAAATCATGGCAT+GGG - chr8.1:62410642-62410661 MS.gene063856:CDS 35.0%
GAAATCAAAATCCAAGTCGA+AGG - chr8.1:62409387-62409406 MS.gene063856:CDS 35.0%
GATCATTCTATTAGTCCTCA+AGG - chr8.1:62409574-62409593 MS.gene063856:CDS 35.0%
GCTTGAACAAATTTATGCTC+TGG - chr8.1:62410014-62410033 MS.gene063856:CDS 35.0%
GGAAAGGTAACAAACTTTCT+GGG + chr8.1:62411215-62411234 None:intergenic 35.0%
GTTAATGACAACAGCCAATT+CGG - chr8.1:62409532-62409551 MS.gene063856:CDS 35.0%
TAATAGTTCGATGAGATCTC+AGG - chr8.1:62410176-62410195 MS.gene063856:CDS 35.0%
TACGAAAATACAAGGTCGAA+TGG - chr8.1:62410612-62410631 MS.gene063856:CDS 35.0%
TCAAATTACCATCGCTTACA+AGG + chr8.1:62409975-62409994 None:intergenic 35.0%
TCTATGAATTCCATACCTTC+TGG - chr8.1:62410555-62410574 MS.gene063856:CDS 35.0%
TGAACTGACACAGAAAAGAT+GGG - chr8.1:62410338-62410357 MS.gene063856:CDS 35.0%
TGTTCCATGATCCTGAAAAT+AGG - chr8.1:62410283-62410302 MS.gene063856:CDS 35.0%
TTCTATTAGTCCTCAAGGAA+CGG - chr8.1:62409579-62409598 MS.gene063856:CDS 35.0%
TTGGCTGTTGTCATTAACTA+TGG + chr8.1:62409530-62409549 None:intergenic 35.0%
!! GATTCCTATTTTCAGGATCA+TGG + chr8.1:62410290-62410309 None:intergenic 35.0%
!! TGTGCCTCCATTTTAACATA+CGG + chr8.1:62410423-62410442 None:intergenic 35.0%
AAGACTTCTCCAAAGACTTC+CGG - chr8.1:62409433-62409452 MS.gene063856:CDS 40.0%
AAGCTGCAAACTCATCTACT+CGG - chr8.1:62409668-62409687 MS.gene063856:CDS 40.0%
AATATGTCCTTCCCAGCAAA+AGG + chr8.1:62411185-62411204 None:intergenic 40.0%
AATCATGGCATGGGAAATGT+CGG - chr8.1:62410651-62410670 MS.gene063856:CDS 40.0%
ACTAGATGTTCCAGAAGGTA+TGG + chr8.1:62410568-62410587 None:intergenic 40.0%
ACTCGGTTGGAATTTATACC+TGG - chr8.1:62409685-62409704 MS.gene063856:CDS 40.0%
ATATCGTGGCTATTTGAAGG+AGG - chr8.1:62409925-62409944 MS.gene063856:CDS 40.0%
ATATTCCCATGTATTTGGGC+CGG - chr8.1:62410716-62410735 MS.gene063856:CDS 40.0%
ATGGCCAGTTCTTATATGAC+TGG - chr8.1:62411095-62411114 MS.gene063856:CDS 40.0%
ATTACCATCGCTTACAAGGT+TGG + chr8.1:62409971-62409990 None:intergenic 40.0%
ATTCAGCTCACATTCACATG+TGG - chr8.1:62410935-62410954 MS.gene063856:CDS 40.0%
CAGTATCAATACAGCAGAGA+GGG - chr8.1:62410214-62410233 MS.gene063856:CDS 40.0%
CGATCCAGTCATATAAGAAC+TGG + chr8.1:62411102-62411121 None:intergenic 40.0%
CTGTGAAGGTGATCTTCAAA+AGG - chr8.1:62410086-62410105 MS.gene063856:CDS 40.0%
GAACTGACACAGAAAAGATG+GGG - chr8.1:62410339-62410358 MS.gene063856:CDS 40.0%
GACGGAAGAATGATTCATCA+AGG - chr8.1:62410462-62410481 MS.gene063856:CDS 40.0%
GATGAGATTGAAGAATCTGC+CGG + chr8.1:62410738-62410757 None:intergenic 40.0%
GATTCATCAAGGAGTAGGAA+GGG - chr8.1:62410473-62410492 MS.gene063856:CDS 40.0%
GATTCTTCAATCTCATCAGG+TGG - chr8.1:62410741-62410760 MS.gene063856:CDS 40.0%
GCAGATTCTTCAATCTCATC+AGG - chr8.1:62410738-62410757 MS.gene063856:CDS 40.0%
GCTCTCATCATTAGTAGATC+CGG + chr8.1:62409455-62409474 None:intergenic 40.0%
GTCACCGTATGTTAAAATGG+AGG - chr8.1:62410416-62410435 MS.gene063856:CDS 40.0%
TACCAACTAGATGTTCCAGA+AGG + chr8.1:62410573-62410592 None:intergenic 40.0%
TCAATCTCATCAGGTGGAAT+GGG - chr8.1:62410747-62410766 MS.gene063856:CDS 40.0%
TCAGTATCAATACAGCAGAG+AGG - chr8.1:62410213-62410232 MS.gene063856:CDS 40.0%
TCGATATCGTGGCTATTTGA+AGG - chr8.1:62409922-62409941 MS.gene063856:CDS 40.0%
TCTAATAACGGCAGTTGTTC+TGG - chr8.1:62409622-62409641 MS.gene063856:CDS 40.0%
TGAATGTGAGCTGAATGATC+TGG + chr8.1:62410931-62410950 None:intergenic 40.0%
TGATTCATCAAGGAGTAGGA+AGG - chr8.1:62410472-62410491 MS.gene063856:CDS 40.0%
TTAGTAGATCCGGAAGTCTT+TGG + chr8.1:62409445-62409464 None:intergenic 40.0%
TTCAATCTCATCAGGTGGAA+TGG - chr8.1:62410746-62410765 MS.gene063856:CDS 40.0%
TTCCGGCATACGAAAATACA+AGG - chr8.1:62410604-62410623 MS.gene063856:CDS 40.0%
TTGGAGTTTAGATTGCTCGT+CGG - chr8.1:62411007-62411026 MS.gene063856:CDS 40.0%
! GACCTTGTATTTTCGTATGC+CGG + chr8.1:62410609-62410628 None:intergenic 40.0%
! GACTGTGGATTCCTATTTTC+AGG + chr8.1:62410297-62410316 None:intergenic 40.0%
! TGGTTGTGATAACGACAGAA+GGG - chr8.1:62409705-62409724 MS.gene063856:CDS 40.0%
!! CTTTTGAAGATCACCTTCAC+AGG + chr8.1:62410088-62410107 None:intergenic 40.0%
!! TACCTTCTGGAACATCTAGT+TGG - chr8.1:62410568-62410587 MS.gene063856:CDS 40.0%
!! TCACATGTGGATTGGAATAC+CGG - chr8.1:62410948-62410967 MS.gene063856:CDS 40.0%
!! TGAGAATGAGAAGGCATTGT+AGG + chr8.1:62410810-62410829 None:intergenic 40.0%
AAAATCCAAGTCGAAGGCGA+AGG - chr8.1:62409393-62409412 MS.gene063856:CDS 45.0%
AAGGTGGAACTGTAAGTGCA+GGG + chr8.1:62410872-62410891 None:intergenic 45.0%
ACTACCAACCTTGTAAGCGA+TGG - chr8.1:62409964-62409983 MS.gene063856:CDS 45.0%
AGATCAGGTGATGTATGGCT+AGG - chr8.1:62411035-62411054 MS.gene063856:CDS 45.0%
AGATCCGACTGAAGAATGAG+AGG - chr8.1:62409731-62409750 MS.gene063856:CDS 45.0%
AGGGAAATTTCATCGTCTGC+TGG - chr8.1:62411140-62411159 MS.gene063856:CDS 45.0%
ATACGGTGACATTGCTTGCA+TGG + chr8.1:62410406-62410425 None:intergenic 45.0%
ATGACTGGATCGCGAAATGT+TGG - chr8.1:62411110-62411129 MS.gene063856:CDS 45.0%
CATCCAGATCAGGTGATGTA+TGG - chr8.1:62411030-62411049 MS.gene063856:CDS 45.0%
CATTCTCACCCTCAACATCA+CGG - chr8.1:62410822-62410841 MS.gene063856:CDS 45.0%
CATTCTTCCGTCGTTCCTAA+AGG + chr8.1:62410454-62410473 None:intergenic 45.0%
CGATTCAAGTGTAGAGACTG+TGG + chr8.1:62410312-62410331 None:intergenic 45.0%
CTTCTGTCGTTATCACAACC+AGG + chr8.1:62409706-62409725 None:intergenic 45.0%
GCTCACATTCACATGTGGAT+TGG - chr8.1:62410940-62410959 MS.gene063856:CDS 45.0%
GCTTCCTCTCATTCTTCAGT+CGG + chr8.1:62409738-62409757 None:intergenic 45.0%
GGGAGGTTTCTATAAACCGA+TGG - chr8.1:62410767-62410786 MS.gene063856:CDS 45.0%
GTGCGATCTCGAAACATCAT+TGG - chr8.1:62409492-62409511 MS.gene063856:CDS 45.0%
TAGCCATACATCACCTGATC+TGG + chr8.1:62411036-62411055 None:intergenic 45.0%
TGCAAACTCATCTACTCGGT+TGG - chr8.1:62409672-62409691 MS.gene063856:CDS 45.0%
TGTTGAGGGTGAGAATGAGA+AGG + chr8.1:62410819-62410838 None:intergenic 45.0%
TTACAGTTCCACCTTCCCTT+GGG - chr8.1:62410877-62410896 MS.gene063856:CDS 45.0%
TTGCGGTCATCAGAATCCAT+CGG - chr8.1:62410905-62410924 MS.gene063856:CDS 45.0%
! ATTGGACCTCACCTTTTGCT+GGG - chr8.1:62411171-62411190 MS.gene063856:CDS 45.0%
! CTGGTTGTGATAACGACAGA+AGG - chr8.1:62409704-62409723 MS.gene063856:CDS 45.0%
! TGAAAAACAGCGCTGGGAAT+AGG - chr8.1:62411072-62411091 MS.gene063856:CDS 45.0%
! TGCTGTATTGATACTGACGC+TGG + chr8.1:62410210-62410229 None:intergenic 45.0%
!! ACATGTGGATTGGAATACCG+GGG - chr8.1:62410950-62410969 MS.gene063856:CDS 45.0%
!! CACATGTGGATTGGAATACC+GGG - chr8.1:62410949-62410968 MS.gene063856:CDS 45.0%
!! TGAGAAGGCATTGTAGGTGA+AGG + chr8.1:62410804-62410823 None:intergenic 45.0%
AATCTGCCGGCCCAAATACA+TGG + chr8.1:62410725-62410744 None:intergenic 50.0%
AGAGCAGTTGTTGCCTGTGA+AGG - chr8.1:62410072-62410091 MS.gene063856:CDS 50.0%
AGGTGGAACTGTAAGTGCAG+GGG + chr8.1:62410871-62410890 None:intergenic 50.0%
ATCTCATCAGGTGGAATGGG+AGG - chr8.1:62410750-62410769 MS.gene063856:CDS 50.0%
ATCTGCCGGCCCAAATACAT+GGG + chr8.1:62410724-62410743 None:intergenic 50.0%
ATGACCGCAAAAGAGCCCAA+GGG + chr8.1:62410895-62410914 None:intergenic 50.0%
CGGCAGTTGTTCTGGTGAAT+CGG - chr8.1:62409630-62409649 MS.gene063856:CDS 50.0%
CGTCGTTGAAAAACAGCGCT+GGG - chr8.1:62411066-62411085 MS.gene063856:CDS 50.0%
CTTACAGTTCCACCTTCCCT+TGG - chr8.1:62410876-62410895 MS.gene063856:CDS 50.0%
GAAGGTGACGATGCAACCAT+CGG + chr8.1:62410786-62410805 None:intergenic 50.0%
GAAGGTGGAACTGTAAGTGC+AGG + chr8.1:62410873-62410892 None:intergenic 50.0%
GAGCTTGAGAAAGTTGCTGC+AGG + chr8.1:62410686-62410705 None:intergenic 50.0%
GTGCAGAAGTTAGTGGCGAT+GGG - chr8.1:62409841-62409860 MS.gene063856:CDS 50.0%
TACTCAGACACCGTTCCTTG+AGG + chr8.1:62409592-62409611 None:intergenic 50.0%
TCAAGGAGTAGGAAGGGAAC+AGG - chr8.1:62410479-62410498 MS.gene063856:CDS 50.0%
TCGTCGTTGAAAAACAGCGC+TGG - chr8.1:62411065-62411084 MS.gene063856:CDS 50.0%
TGTGCAGAAGTTAGTGGCGA+TGG - chr8.1:62409840-62409859 MS.gene063856:CDS 50.0%
! AAACAGCGCTGGGAATAGGA+TGG - chr8.1:62411076-62411095 MS.gene063856:CDS 50.0%
! GATTGGACCTCACCTTTTGC+TGG - chr8.1:62411170-62411189 MS.gene063856:CDS 50.0%
!! CATGTGGATTGGAATACCGG+GGG - chr8.1:62410951-62410970 MS.gene063856:CDS 50.0%
!! TGTTTGGCATCGGCGAATTG+TGG + chr8.1:62410522-62410541 None:intergenic 50.0%
AAGTGCAGGGGAAGATGCAG+CGG + chr8.1:62410859-62410878 None:intergenic 55.0%
ACCCTCAACATCACGGCTCA+CGG - chr8.1:62410829-62410848 MS.gene063856:CDS 55.0%
AGCACCAGAGACAGAGGGAA+AGG - chr8.1:62409755-62409774 MS.gene063856:CDS 55.0%
CAAAAGAGCCCAAGGGAAGG+TGG + chr8.1:62410888-62410907 None:intergenic 55.0%
CAAAGCCAACGTTGCTCGCT+CGG + chr8.1:62409875-62409894 None:intergenic 55.0%
CGTCTGCTGGATTGCGAGAT+TGG - chr8.1:62411153-62411172 MS.gene063856:CDS 55.0%
CTCTCCTTTCCCTCTGTCTC+TGG + chr8.1:62409762-62409781 None:intergenic 55.0%
GAATTCTTGCACCATGCCCC+CGG + chr8.1:62410970-62410989 None:intergenic 55.0%
GAGCTGAATGATCTGGCCGA+TGG + chr8.1:62410924-62410943 None:intergenic 55.0%
GATGACCGCAAAAGAGCCCA+AGG + chr8.1:62410896-62410915 None:intergenic 55.0%
GCGAAATGTTGGCACAGCGA+GGG - chr8.1:62411121-62411140 MS.gene063856:CDS 55.0%
GTCCTTCCCAGCAAAAGGTG+AGG + chr8.1:62411180-62411199 None:intergenic 55.0%
TCCGTGAGCCGTGATGTTGA+GGG + chr8.1:62410833-62410852 None:intergenic 55.0%
TCGAGATCGCACGCACTAGA+AGG + chr8.1:62409484-62409503 None:intergenic 55.0%
TTCCGTGAGCCGTGATGTTG+AGG + chr8.1:62410834-62410853 None:intergenic 55.0%
! CCGAGTGCCTTTAGGAACGA+CGG - chr8.1:62410444-62410463 MS.gene063856:CDS 55.0%
! CCTTCCCTTGGGCTCTTTTG+CGG - chr8.1:62410888-62410907 MS.gene063856:CDS 55.0%
! GACCTCACCTTTTGCTGGGA+AGG - chr8.1:62411175-62411194 MS.gene063856:CDS 55.0%
!! AGAGGAAGCACCAGAGACAG+AGG - chr8.1:62409749-62409768 MS.gene063856:CDS 55.0%
!! CCGTCGTTCCTAAAGGCACT+CGG + chr8.1:62410447-62410466 None:intergenic 55.0%
!! GAGGAAGCACCAGAGACAGA+GGG - chr8.1:62409750-62409769 MS.gene063856:CDS 55.0%
AGGCACAGCCGAGTGCCTTT+AGG - chr8.1:62410436-62410455 MS.gene063856:CDS 60.0%
CACTACCGAGCGAGCAACGT+TGG - chr8.1:62409867-62409886 MS.gene063856:CDS 60.0%
CCGCAAAAGAGCCCAAGGGA+AGG + chr8.1:62410891-62410910 None:intergenic 60.0%
CGCGAAATGTTGGCACAGCG+AGG - chr8.1:62411120-62411139 MS.gene063856:CDS 60.0%
GGATTGGAATACCGGGGGCA+TGG - chr8.1:62410956-62410975 MS.gene063856:CDS 60.0%
GTCGAAGGCGAAGGCTGCAA+AGG - chr8.1:62409402-62409421 MS.gene063856:CDS 60.0%
TGCAGCCTTCGCCTTCGACT+TGG + chr8.1:62409401-62409420 None:intergenic 60.0%
TGCTCGTCGGCATCCAGATC+AGG - chr8.1:62411020-62411039 MS.gene063856:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 62409373 62411244 62409373 ID=MS.gene063856
chr8.1 mRNA 62409373 62411244 62409373 ID=MS.gene063856.t1;Parent=MS.gene063856
chr8.1 exon 62409373 62411244 62409373 ID=MS.gene063856.t1.exon1;Parent=MS.gene063856.t1
chr8.1 CDS 62409373 62411244 62409373 ID=cds.MS.gene063856.t1;Parent=MS.gene063856.t1
Gene Sequence

>MS.gene063856

ATGTCTCCATCAATGAAATCAAAATCCAAGTCGAAGGCGAAGGCTGCAAAGGAACAACAAAAGACTTCTCCAAAGACTTCCGGATCTACTAATGATGAGAGCAGCATTCCTTCTAGTGCGTGCGATCTCGAAACATCATTGGTTGATTCTTCTTCCATAGTTAATGACAACAGCCAATTCGGAAAAATAAATGAAACAGATGATCATTCTATTAGTCCTCAAGGAACGGTGTCTGAGTATGATTCTGTTTCTAATAACGGCAGTTGTTCTGGTGAATCGGAAGACACTAAAGAGAAAGCTGCAAACTCATCTACTCGGTTGGAATTTATACCTGGTTGTGATAACGACAGAAGGGATAAGATCCGACTGAAGAATGAGAGGAAGCACCAGAGACAGAGGGAAAGGAGAGCTCATGAGTTGCACGAGCGATGCGTTGCGTATCTAATGTCGAGAAAGCTAGAAAAACTTGTGCAGAAGTTAGTGGCGATGGGATTCACTACCGAGCGAGCAACGTTGGCTTTGAAGTTAAACAACGGAAAATTAGAAGAATCGATATCGTGGCTATTTGAAGGAGGAAGTGAAGTGAAAGATACTACCAACCTTGTAAGCGATGGTAATTTGAAGATCGACATAAGTGAAGTGCTTGAACAAATTTATGCTCTGGAAGTAAAATACAATTGTTCAAAGCAAGAAGTTGAAAGAGCAGTTGTTGCCTGTGAAGGTGATCTTCAAAAGGCAGAAAGCACGTTAAAATCTCAGAAGGAAGAATCTCATTTGAATCGGTCAGAAGATTCTGCTCAAAATAATAGTTCGATGAGATCTCAGGGATTACAACCAGCGTCAGTATCAATACAGCAGAGAGGGAATGAAAGTGATTTCAACTATTACAATGTACGTGGTGCTGATTCTATGTTCCATGATCCTGAAAATAGGAATCCACAGTCTCTACACTTGAATCGTCAAAATGAACTGACACAGAAAAGATGGGGTGTTAGTGCTACACCATCAAATCCTTCTAATATGTTACAATCCATGCAAGCAATGTCACCGTATGTTAAAATGGAGGCACAGCCGAGTGCCTTTAGGAACGACGGAAGAATGATTCATCAAGGAGTAGGAAGGGAACAGGTAGTCATGATGCAGCATCCACAATTCGCCGATGCCAAACAAAATTATCTGAATTCTATGAATTCCATACCTTCTGGAACATCTAGTTGGTATGTAAATAGTGTTCCGGCATACGAAAATACAAGGTCGAATGGGAATTTACTACTACAAAATCATGGCATGGGAAATGTCGGCGCAGATCGCCTGCAGCAACTTTCTCAAGCTCCTTATAAAGAATATTCCCATGTATTTGGGCCGGCAGATTCTTCAATCTCATCAGGTGGAATGGGAGGTTTCTATAAACCGATGGTTGCATCGTCACCTTCACCTACAATGCCTTCTCATTCTCACCCTCAACATCACGGCTCACGGAACACCGCTGCATCTTCCCCTGCACTTACAGTTCCACCTTCCCTTGGGCTCTTTTGCGGTCATCAGAATCCATCGGCCAGATCATTCAGCTCACATTCACATGTGGATTGGAATACCGGGGGCATGGTGCAAGAATTCGACTACAACAATATAGATTGGAGTTTAGATTGCTCGTCGGCATCCAGATCAGGTGATGTATGGCTAGGATTCTCATCGTCGTTGAAAAACAGCGCTGGGAATAGGATGGCCAGTTCTTATATGACTGGATCGCGAAATGTTGGCACAGCGAGGGAAATTTCATCGTCTGCTGGATTGCGAGATTGGACCTCACCTTTTGCTGGGAAGGACATATTCAGTGCTCCCAGAAAGTTTGTTACCTTTCCTCCTATGTAG

Protein sequence

>MS.gene063856.t1

MSPSMKSKSKSKAKAAKEQQKTSPKTSGSTNDESSIPSSACDLETSLVDSSSIVNDNSQFGKINETDDHSISPQGTVSEYDSVSNNGSCSGESEDTKEKAANSSTRLEFIPGCDNDRRDKIRLKNERKHQRQRERRAHELHERCVAYLMSRKLEKLVQKLVAMGFTTERATLALKLNNGKLEESISWLFEGGSEVKDTTNLVSDGNLKIDISEVLEQIYALEVKYNCSKQEVERAVVACEGDLQKAESTLKSQKEESHLNRSEDSAQNNSSMRSQGLQPASVSIQQRGNESDFNYYNVRGADSMFHDPENRNPQSLHLNRQNELTQKRWGVSATPSNPSNMLQSMQAMSPYVKMEAQPSAFRNDGRMIHQGVGREQVVMMQHPQFADAKQNYLNSMNSIPSGTSSWYVNSVPAYENTRSNGNLLLQNHGMGNVGADRLQQLSQAPYKEYSHVFGPADSSISSGGMGGFYKPMVASSPSPTMPSHSHPQHHGSRNTAASSPALTVPPSLGLFCGHQNPSARSFSSHSHVDWNTGGMVQEFDYNNIDWSLDCSSASRSGDVWLGFSSSLKNSAGNRMASSYMTGSRNVGTAREISSSAGLRDWTSPFAGKDIFSAPRKFVTFPPM