Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063856.t1 | XP_003628026.1 | 95.7 | 588 | 24 | 1 | 37 | 623 | 37 | 624 | 0.00E+00 | 1095.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063856.t1 | G7LIE5 | 95.7 | 588 | 24 | 1 | 37 | 623 | 37 | 624 | 0.0e+00 | 1095.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene063856 | 0.814372 | 1.59E-51 | -1.69E-46 |
MS.gene049159 | MS.gene063856 | 0.817326 | 3.50E-52 | -1.69E-46 |
MS.gene049368 | MS.gene063856 | 0.813953 | 1.97E-51 | -1.69E-46 |
MS.gene049452 | MS.gene063856 | 0.821318 | 4.30E-53 | -1.69E-46 |
MS.gene049801 | MS.gene063856 | 0.800001 | 1.77E-48 | -1.69E-46 |
MS.gene049983 | MS.gene063856 | 0.842076 | 3.23E-58 | -1.69E-46 |
MS.gene050654 | MS.gene063856 | 0.858205 | 9.66E-63 | -1.69E-46 |
MS.gene050737 | MS.gene063856 | 0.830025 | 3.70E-55 | -1.69E-46 |
MS.gene050941 | MS.gene063856 | 0.868919 | 4.56E-66 | -1.69E-46 |
MS.gene051066 | MS.gene063856 | 0.833359 | 5.58E-56 | -1.69E-46 |
MS.gene051198 | MS.gene063856 | 0.816585 | 5.13E-52 | -1.69E-46 |
MS.gene051800 | MS.gene063856 | 0.827638 | 1.40E-54 | -1.69E-46 |
MS.gene052342 | MS.gene063856 | 0.814864 | 1.24E-51 | -1.69E-46 |
MS.gene052518 | MS.gene063856 | 0.80218 | 6.34E-49 | -1.69E-46 |
MS.gene052674 | MS.gene063856 | 0.817274 | 3.59E-52 | -1.69E-46 |
MS.gene052675 | MS.gene063856 | 0.816189 | 6.29E-52 | -1.69E-46 |
MS.gene052677 | MS.gene063856 | 0.820399 | 7.00E-53 | -1.69E-46 |
MS.gene05350 | MS.gene063856 | 0.822419 | 2.39E-53 | -1.69E-46 |
MS.gene054479 | MS.gene063856 | 0.82786 | 1.24E-54 | -1.69E-46 |
MS.gene05458 | MS.gene063856 | 0.800697 | 1.28E-48 | -1.69E-46 |
MS.gene055926 | MS.gene063856 | 0.82474 | 6.85E-54 | -1.69E-46 |
MS.gene056308 | MS.gene063856 | 0.801406 | 9.14E-49 | -1.69E-46 |
MS.gene056390 | MS.gene063856 | 0.804978 | 1.67E-49 | -1.69E-46 |
MS.gene056480 | MS.gene063856 | 0.856926 | 2.31E-62 | -1.69E-46 |
MS.gene056831 | MS.gene063856 | 0.826005 | 3.44E-54 | -1.69E-46 |
MS.gene057208 | MS.gene063856 | 0.826091 | 3.28E-54 | -1.69E-46 |
MS.gene057915 | MS.gene063856 | 0.803894 | 2.80E-49 | -1.69E-46 |
MS.gene058081 | MS.gene063856 | 0.831369 | 1.74E-55 | -1.69E-46 |
MS.gene058223 | MS.gene063856 | -0.807793 | 4.25E-50 | -1.69E-46 |
MS.gene058429 | MS.gene063856 | 0.808369 | 3.20E-50 | -1.69E-46 |
MS.gene059283 | MS.gene063856 | 0.819779 | 9.71E-53 | -1.69E-46 |
MS.gene059439 | MS.gene063856 | 0.807096 | 5.97E-50 | -1.69E-46 |
MS.gene059842 | MS.gene063856 | 0.826388 | 2.79E-54 | -1.69E-46 |
MS.gene059952 | MS.gene063856 | 0.809848 | 1.54E-50 | -1.69E-46 |
MS.gene06010 | MS.gene063856 | 0.806553 | 7.78E-50 | -1.69E-46 |
MS.gene060435 | MS.gene063856 | 0.808045 | 3.76E-50 | -1.69E-46 |
MS.gene06052 | MS.gene063856 | 0.848074 | 7.73E-60 | -1.69E-46 |
MS.gene060777 | MS.gene063856 | 0.812084 | 5.07E-51 | -1.69E-46 |
MS.gene060932 | MS.gene063856 | 0.838939 | 2.13E-57 | -1.69E-46 |
MS.gene060935 | MS.gene063856 | 0.824842 | 6.48E-54 | -1.69E-46 |
MS.gene060937 | MS.gene063856 | 0.830351 | 3.08E-55 | -1.69E-46 |
MS.gene061100 | MS.gene063856 | 0.806489 | 8.02E-50 | -1.69E-46 |
MS.gene06121 | MS.gene063856 | 0.837625 | 4.66E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063856.t1 | MTR_8g041570 | 95.994 | 624 | 24 | 1 | 1 | 623 | 1 | 624 | 0.0 | 1198 |
MS.gene063856.t1 | MTR_5g088750 | 38.519 | 675 | 314 | 19 | 18 | 621 | 17 | 661 | 1.07e-114 | 357 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063856.t1 | AT2G26920 | 35.757 | 674 | 309 | 24 | 18 | 619 | 22 | 643 | 9.10e-83 | 273 |
MS.gene063856.t1 | AT5G12120 | 51.128 | 266 | 112 | 5 | 1 | 256 | 1 | 258 | 9.32e-70 | 238 |
Find 147 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAATATTCCCATGTATT+TGG | 0.095875 | 8.1:-62409884 | MS.gene063856:CDS |
AGGAAAGGTAACAAACTTTC+TGG | 0.245346 | 8.1:+62409382 | None:intergenic |
ACATGGGAATATTCTTTATA+AGG | 0.275764 | 8.1:+62409890 | None:intergenic |
TCTAATAACGGCAGTTGTTC+TGG | 0.279190 | 8.1:-62410973 | MS.gene063856:CDS |
TGTTCCATGATCCTGAAAAT+AGG | 0.320132 | 8.1:-62410312 | MS.gene063856:CDS |
AAGAATATTCCCATGTATTT+GGG | 0.321676 | 8.1:-62409883 | MS.gene063856:CDS |
TTGGCTGTTGTCATTAACTA+TGG | 0.321935 | 8.1:+62411068 | None:intergenic |
TTAGTAGATCCGGAAGTCTT+TGG | 0.322942 | 8.1:+62411153 | None:intergenic |
CTCTCCTTTCCCTCTGTCTC+TGG | 0.344034 | 8.1:+62410836 | None:intergenic |
CGTCTGCTGGATTGCGAGAT+TGG | 0.349620 | 8.1:-62409442 | MS.gene063856:CDS |
ATGGATTGTAACATATTAGA+AGG | 0.352212 | 8.1:+62410211 | None:intergenic |
TCGAGATCGCACGCACTAGA+AGG | 0.367011 | 8.1:+62411114 | None:intergenic |
AACATATTAGAAGGATTTGA+TGG | 0.388055 | 8.1:+62410220 | None:intergenic |
CTTACAGTTCCACCTTCCCT+TGG | 0.389072 | 8.1:-62409719 | MS.gene063856:CDS |
TCTATGAATTCCATACCTTC+TGG | 0.389904 | 8.1:-62410040 | MS.gene063856:CDS |
AGGCACAGCCGAGTGCCTTT+AGG | 0.397963 | 8.1:-62410159 | MS.gene063856:CDS |
TGAGAATGAGAAGGCATTGT+AGG | 0.407581 | 8.1:+62409788 | None:intergenic |
TATGATTCTGTTTCTAATAA+CGG | 0.410813 | 8.1:-62410985 | MS.gene063856:CDS |
TCACATGTGGATTGGAATAC+CGG | 0.413944 | 8.1:-62409647 | MS.gene063856:CDS |
GTTAATGACAACAGCCAATT+CGG | 0.418306 | 8.1:-62411063 | MS.gene063856:CDS |
TGCAGCCTTCGCCTTCGACT+TGG | 0.424604 | 8.1:+62411197 | None:intergenic |
AATGTCACCGTATGTTAAAA+TGG | 0.428913 | 8.1:-62410182 | MS.gene063856:CDS |
TAATAGTTCGATGAGATCTC+AGG | 0.433345 | 8.1:-62410419 | MS.gene063856:CDS |
CGGCAGTTGTTCTGGTGAAT+CGG | 0.434328 | 8.1:-62410965 | MS.gene063856:CDS |
TTACAGTTCCACCTTCCCTT+GGG | 0.436626 | 8.1:-62409718 | MS.gene063856:CDS |
TAGCCATACATCACCTGATC+TGG | 0.442603 | 8.1:+62409562 | None:intergenic |
TTGGTATGTAAATAGTGTTC+CGG | 0.444465 | 8.1:-62410008 | MS.gene063856:CDS |
GCTTGAACAAATTTATGCTC+TGG | 0.448008 | 8.1:-62410581 | MS.gene063856:CDS |
CGATCCAGTCATATAAGAAC+TGG | 0.453454 | 8.1:+62409496 | None:intergenic |
TGCTCGTCGGCATCCAGATC+AGG | 0.454135 | 8.1:-62409575 | MS.gene063856:CDS |
ATGAACTGACACAGAAAAGA+TGG | 0.455206 | 8.1:-62410258 | MS.gene063856:CDS |
TCAAATTACCATCGCTTACA+AGG | 0.456736 | 8.1:+62410623 | None:intergenic |
CAAAGCCAACGTTGCTCGCT+CGG | 0.460956 | 8.1:+62410723 | None:intergenic |
TTCAATCTCATCAGGTGGAA+TGG | 0.464377 | 8.1:-62409849 | MS.gene063856:CDS |
AAGACTTCTCCAAAGACTTC+CGG | 0.464853 | 8.1:-62411162 | MS.gene063856:CDS |
TCGACTACAACAATATAGAT+TGG | 0.471505 | 8.1:-62409607 | MS.gene063856:CDS |
CATCCAGATCAGGTGATGTA+TGG | 0.472343 | 8.1:-62409565 | MS.gene063856:CDS |
TCAATCTCATCAGGTGGAAT+GGG | 0.472852 | 8.1:-62409848 | MS.gene063856:CDS |
AGGGAAATTTCATCGTCTGC+TGG | 0.474158 | 8.1:-62409455 | MS.gene063856:CDS |
AATCTGCCGGCCCAAATACA+TGG | 0.476192 | 8.1:+62409873 | None:intergenic |
CATTCTTCCGTCGTTCCTAA+AGG | 0.476672 | 8.1:+62410144 | None:intergenic |
TCAAGGAGTAGGAAGGGAAC+AGG | 0.480070 | 8.1:-62410116 | MS.gene063856:CDS |
ATACGGTGACATTGCTTGCA+TGG | 0.482137 | 8.1:+62410192 | None:intergenic |
AAAACTTGTGCAGAAGTTAG+TGG | 0.483211 | 8.1:-62410761 | MS.gene063856:CDS |
GCAGATTCTTCAATCTCATC+AGG | 0.484175 | 8.1:-62409857 | MS.gene063856:CDS |
GCTCTCATCATTAGTAGATC+CGG | 0.484784 | 8.1:+62411143 | None:intergenic |
GCTCACATTCACATGTGGAT+TGG | 0.485955 | 8.1:-62409655 | MS.gene063856:CDS |
GAAGGTGGAACTGTAAGTGC+AGG | 0.489811 | 8.1:+62409725 | None:intergenic |
CACATGTGGATTGGAATACC+GGG | 0.491320 | 8.1:-62409646 | MS.gene063856:CDS |
ACGAAAATACAAGGTCGAAT+GGG | 0.496043 | 8.1:-62409982 | MS.gene063856:CDS |
TTCCGTGAGCCGTGATGTTG+AGG | 0.498017 | 8.1:+62409764 | None:intergenic |
ACTAGATGTTCCAGAAGGTA+TGG | 0.500862 | 8.1:+62410030 | None:intergenic |
GCTTCCTCTCATTCTTCAGT+CGG | 0.502524 | 8.1:+62410860 | None:intergenic |
AGGAAGAATCTCATTTGAAT+CGG | 0.506944 | 8.1:-62410462 | MS.gene063856:CDS |
GGAAAGGTAACAAACTTTCT+GGG | 0.507017 | 8.1:+62409383 | None:intergenic |
AATATGTCCTTCCCAGCAAA+AGG | 0.507323 | 8.1:+62409413 | None:intergenic |
TACCTTCTGGAACATCTAGT+TGG | 0.508910 | 8.1:-62410027 | MS.gene063856:CDS |
TGTGCAGAAGTTAGTGGCGA+TGG | 0.510221 | 8.1:-62410755 | MS.gene063856:CDS |
CTGTGAAGGTGATCTTCAAA+AGG | 0.517565 | 8.1:-62410509 | MS.gene063856:CDS |
ATGGCCAGTTCTTATATGAC+TGG | 0.522911 | 8.1:-62409500 | MS.gene063856:CDS |
AGCACCAGAGACAGAGGGAA+AGG | 0.524230 | 8.1:-62410840 | MS.gene063856:CDS |
ATTACCATCGCTTACAAGGT+TGG | 0.525468 | 8.1:+62410627 | None:intergenic |
TACGAAAATACAAGGTCGAA+TGG | 0.529380 | 8.1:-62409983 | MS.gene063856:CDS |
ACCCTCAACATCACGGCTCA+CGG | 0.530298 | 8.1:-62409766 | MS.gene063856:CDS |
TTATGATCCAATTACTACAT+AGG | 0.534908 | 8.1:+62409359 | None:intergenic |
GTGCGATCTCGAAACATCAT+TGG | 0.535814 | 8.1:-62411103 | MS.gene063856:CDS |
TCGATATCGTGGCTATTTGA+AGG | 0.535817 | 8.1:-62410673 | MS.gene063856:CDS |
ACTCGGTTGGAATTTATACC+TGG | 0.536492 | 8.1:-62410910 | MS.gene063856:CDS |
CAAAAGAGCCCAAGGGAAGG+TGG | 0.537570 | 8.1:+62409710 | None:intergenic |
ATGACTGGATCGCGAAATGT+TGG | 0.538183 | 8.1:-62409485 | MS.gene063856:CDS |
TGAGAAGGCATTGTAGGTGA+AGG | 0.542455 | 8.1:+62409794 | None:intergenic |
TGAACTGACACAGAAAAGAT+GGG | 0.548313 | 8.1:-62410257 | MS.gene063856:CDS |
GTCGAAGGCGAAGGCTGCAA+AGG | 0.548842 | 8.1:-62411193 | MS.gene063856:CDS |
ATATTCCCATGTATTTGGGC+CGG | 0.551558 | 8.1:-62409879 | MS.gene063856:CDS |
GTGCAGAAGTTAGTGGCGAT+GGG | 0.551834 | 8.1:-62410754 | MS.gene063856:CDS |
ATCTCATCAGGTGGAATGGG+AGG | 0.552551 | 8.1:-62409845 | MS.gene063856:CDS |
TGCAAACTCATCTACTCGGT+TGG | 0.552784 | 8.1:-62410923 | MS.gene063856:CDS |
ACTACTACAAAATCATGGCA+TGG | 0.554523 | 8.1:-62409954 | MS.gene063856:CDS |
AATTTACTACTACAAAATCA+TGG | 0.562396 | 8.1:-62409959 | MS.gene063856:CDS |
AATCATGGCATGGGAAATGT+CGG | 0.563598 | 8.1:-62409944 | MS.gene063856:CDS |
TGTTTGGCATCGGCGAATTG+TGG | 0.563782 | 8.1:+62410076 | None:intergenic |
CTACTACAAAATCATGGCAT+GGG | 0.564200 | 8.1:-62409953 | MS.gene063856:CDS |
CACTACCGAGCGAGCAACGT+TGG | 0.564651 | 8.1:-62410728 | MS.gene063856:CDS |
ATCTGCCGGCCCAAATACAT+GGG | 0.568471 | 8.1:+62409874 | None:intergenic |
AGAATGATTCATCAAGGAGT+AGG | 0.573842 | 8.1:-62410127 | MS.gene063856:CDS |
GATCATTCTATTAGTCCTCA+AGG | 0.577446 | 8.1:-62411021 | MS.gene063856:CDS |
GAATTCTTGCACCATGCCCC+CGG | 0.581487 | 8.1:+62409628 | None:intergenic |
CTGGTTGTGATAACGACAGA+AGG | 0.581636 | 8.1:-62410891 | MS.gene063856:CDS |
TCCGTGAGCCGTGATGTTGA+GGG | 0.582113 | 8.1:+62409765 | None:intergenic |
TTCTATTAGTCCTCAAGGAA+CGG | 0.582220 | 8.1:-62411016 | MS.gene063856:CDS |
GAGCTTGAGAAAGTTGCTGC+AGG | 0.584773 | 8.1:+62409912 | None:intergenic |
TGATTCATCAAGGAGTAGGA+AGG | 0.585649 | 8.1:-62410123 | MS.gene063856:CDS |
AGAGGAAGCACCAGAGACAG+AGG | 0.586818 | 8.1:-62410846 | MS.gene063856:CDS |
AGATCAGGTGATGTATGGCT+AGG | 0.589748 | 8.1:-62409560 | MS.gene063856:CDS |
AAAATCCAAGTCGAAGGCGA+AGG | 0.590839 | 8.1:-62411202 | MS.gene063856:CDS |
TTGCGGTCATCAGAATCCAT+CGG | 0.592019 | 8.1:-62409690 | MS.gene063856:CDS |
GATGAGATTGAAGAATCTGC+CGG | 0.594518 | 8.1:+62409860 | None:intergenic |
CAGTATCAATACAGCAGAGA+GGG | 0.594892 | 8.1:-62410381 | MS.gene063856:CDS |
GGGAGGTTTCTATAAACCGA+TGG | 0.598021 | 8.1:-62409828 | MS.gene063856:CDS |
CCGTCGTTCCTAAAGGCACT+CGG | 0.598969 | 8.1:+62410151 | None:intergenic |
GAAATCAAAATCCAAGTCGA+AGG | 0.599824 | 8.1:-62411208 | MS.gene063856:CDS |
GATGACCGCAAAAGAGCCCA+AGG | 0.600284 | 8.1:+62409702 | None:intergenic |
AATAGTTCGATGAGATCTCA+GGG | 0.600975 | 8.1:-62410418 | MS.gene063856:CDS |
AAGCACGTTAAAATCTCAGA+AGG | 0.602359 | 8.1:-62410482 | MS.gene063856:CDS |
TTCCGGCATACGAAAATACA+AGG | 0.602463 | 8.1:-62409991 | MS.gene063856:CDS |
GACGGAAGAATGATTCATCA+AGG | 0.604217 | 8.1:-62410133 | MS.gene063856:CDS |
CGATTCAAGTGTAGAGACTG+TGG | 0.605833 | 8.1:+62410286 | None:intergenic |
CTTCTGTCGTTATCACAACC+AGG | 0.608348 | 8.1:+62410892 | None:intergenic |
GATTCATCAAGGAGTAGGAA+GGG | 0.611644 | 8.1:-62410122 | MS.gene063856:CDS |
AAGGTGGAACTGTAAGTGCA+GGG | 0.611990 | 8.1:+62409726 | None:intergenic |
TGATCCAATTACTACATAGG+AGG | 0.615657 | 8.1:+62409362 | None:intergenic |
TGAATGTGAGCTGAATGATC+TGG | 0.619752 | 8.1:+62409667 | None:intergenic |
CGCGAAATGTTGGCACAGCG+AGG | 0.619774 | 8.1:-62409475 | MS.gene063856:CDS |
GAAGGTGACGATGCAACCAT+CGG | 0.620053 | 8.1:+62409812 | None:intergenic |
AAACAGCGCTGGGAATAGGA+TGG | 0.623093 | 8.1:-62409519 | MS.gene063856:CDS |
CAATTACTACATAGGAGGAA+AGG | 0.626141 | 8.1:+62409367 | None:intergenic |
AGAGCAGTTGTTGCCTGTGA+AGG | 0.626472 | 8.1:-62410523 | MS.gene063856:CDS |
GAGCTGAATGATCTGGCCGA+TGG | 0.626913 | 8.1:+62409674 | None:intergenic |
GCGAAATGTTGGCACAGCGA+GGG | 0.629324 | 8.1:-62409474 | MS.gene063856:CDS |
CATTCTCACCCTCAACATCA+CGG | 0.630194 | 8.1:-62409773 | MS.gene063856:CDS |
ACTACCAACCTTGTAAGCGA+TGG | 0.630386 | 8.1:-62410631 | MS.gene063856:CDS |
GATTCTTCAATCTCATCAGG+TGG | 0.630854 | 8.1:-62409854 | MS.gene063856:CDS |
ATTCAGCTCACATTCACATG+TGG | 0.630960 | 8.1:-62409660 | MS.gene063856:CDS |
TGCTGTATTGATACTGACGC+TGG | 0.632713 | 8.1:+62410388 | None:intergenic |
AGATCCGACTGAAGAATGAG+AGG | 0.634680 | 8.1:-62410864 | MS.gene063856:CDS |
TTGGAGTTTAGATTGCTCGT+CGG | 0.636464 | 8.1:-62409588 | MS.gene063856:CDS |
GAGGAAGCACCAGAGACAGA+GGG | 0.640584 | 8.1:-62410845 | MS.gene063856:CDS |
TACTCAGACACCGTTCCTTG+AGG | 0.642758 | 8.1:+62411006 | None:intergenic |
AATTAGAAGAATCGATATCG+TGG | 0.648950 | 8.1:-62410684 | MS.gene063856:CDS |
TGGTTGTGATAACGACAGAA+GGG | 0.649400 | 8.1:-62410890 | MS.gene063856:CDS |
CCGCAAAAGAGCCCAAGGGA+AGG | 0.656859 | 8.1:+62409707 | None:intergenic |
AAGCTGCAAACTCATCTACT+CGG | 0.657093 | 8.1:-62410927 | MS.gene063856:CDS |
GTCCTTCCCAGCAAAAGGTG+AGG | 0.666833 | 8.1:+62409418 | None:intergenic |
TGTTGAGGGTGAGAATGAGA+AGG | 0.667009 | 8.1:+62409779 | None:intergenic |
CCGAGTGCCTTTAGGAACGA+CGG | 0.668148 | 8.1:-62410151 | MS.gene063856:CDS |
ATATCGTGGCTATTTGAAGG+AGG | 0.676954 | 8.1:-62410670 | MS.gene063856:CDS |
AAGTGCAGGGGAAGATGCAG+CGG | 0.677500 | 8.1:+62409739 | None:intergenic |
TACCAACTAGATGTTCCAGA+AGG | 0.679667 | 8.1:+62410025 | None:intergenic |
AGGTGGAACTGTAAGTGCAG+GGG | 0.680688 | 8.1:+62409727 | None:intergenic |
TTCAACTATTACAATGTACG+TGG | 0.683105 | 8.1:-62410346 | MS.gene063856:CDS |
ACATGTGGATTGGAATACCG+GGG | 0.687769 | 8.1:-62409645 | MS.gene063856:CDS |
TTGGCTTTGAAGTTAAACAA+CGG | 0.688283 | 8.1:-62410709 | MS.gene063856:CDS |
GAACTGACACAGAAAAGATG+GGG | 0.693814 | 8.1:-62410256 | MS.gene063856:CDS |
GTCACCGTATGTTAAAATGG+AGG | 0.695807 | 8.1:-62410179 | MS.gene063856:CDS |
TCAGTATCAATACAGCAGAG+AGG | 0.701867 | 8.1:-62410382 | MS.gene063856:CDS |
CATGTGGATTGGAATACCGG+GGG | 0.716378 | 8.1:-62409644 | MS.gene063856:CDS |
ATGACCGCAAAAGAGCCCAA+GGG | 0.718537 | 8.1:+62409703 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTACTACTACAAAATCA+TGG | - | chr8.1:62410636-62410655 | MS.gene063856:CDS | 20.0% |
!!! | AGAATTCAGATAATTTTGTT+TGG | + | chr8.1:62410538-62410557 | None:intergenic | 20.0% |
!!! | TATGATTCTGTTTCTAATAA+CGG | - | chr8.1:62409610-62409629 | MS.gene063856:CDS | 20.0% |
!!! | TTTCATTTATTTTTCCGAAT+TGG | + | chr8.1:62409549-62409568 | None:intergenic | 20.0% |
! | AAAGAATATTCCCATGTATT+TGG | - | chr8.1:62410711-62410730 | MS.gene063856:CDS | 25.0% |
! | AACATATTAGAAGGATTTGA+TGG | + | chr8.1:62410378-62410397 | None:intergenic | 25.0% |
! | AAGAATATTCCCATGTATTT+GGG | - | chr8.1:62410712-62410731 | MS.gene063856:CDS | 25.0% |
! | ACATGGGAATATTCTTTATA+AGG | + | chr8.1:62410708-62410727 | None:intergenic | 25.0% |
!! | ATGGATTGTAACATATTAGA+AGG | + | chr8.1:62410387-62410406 | None:intergenic | 25.0% |
!!! | TTGGATTTTGATTTCATTGA+TGG | + | chr8.1:62409382-62409401 | None:intergenic | 25.0% |
AATGTCACCGTATGTTAAAA+TGG | - | chr8.1:62410413-62410432 | MS.gene063856:CDS | 30.0% | |
AATTAGAAGAATCGATATCG+TGG | - | chr8.1:62409911-62409930 | MS.gene063856:CDS | 30.0% | |
AGGAAGAATCTCATTTGAAT+CGG | - | chr8.1:62410133-62410152 | MS.gene063856:CDS | 30.0% | |
TCGACTACAACAATATAGAT+TGG | - | chr8.1:62410988-62411007 | MS.gene063856:CDS | 30.0% | |
TTCAACTATTACAATGTACG+TGG | - | chr8.1:62410249-62410268 | MS.gene063856:CDS | 30.0% | |
TTGGTATGTAAATAGTGTTC+CGG | - | chr8.1:62410587-62410606 | MS.gene063856:CDS | 30.0% | |
!! | CAGATAATTTTGTTTGGCAT+CGG | + | chr8.1:62410532-62410551 | None:intergenic | 30.0% |
!! | TTGGCTTTGAAGTTAAACAA+CGG | - | chr8.1:62409886-62409905 | MS.gene063856:CDS | 30.0% |
AAAACTTGTGCAGAAGTTAG+TGG | - | chr8.1:62409834-62409853 | MS.gene063856:CDS | 35.0% | |
AAGCACGTTAAAATCTCAGA+AGG | - | chr8.1:62410113-62410132 | MS.gene063856:CDS | 35.0% | |
AATAGTTCGATGAGATCTCA+GGG | - | chr8.1:62410177-62410196 | MS.gene063856:CDS | 35.0% | |
ACGAAAATACAAGGTCGAAT+GGG | - | chr8.1:62410613-62410632 | MS.gene063856:CDS | 35.0% | |
ACTACTACAAAATCATGGCA+TGG | - | chr8.1:62410641-62410660 | MS.gene063856:CDS | 35.0% | |
AGAATGATTCATCAAGGAGT+AGG | - | chr8.1:62410468-62410487 | MS.gene063856:CDS | 35.0% | |
AGGAAAGGTAACAAACTTTC+TGG | + | chr8.1:62411216-62411235 | None:intergenic | 35.0% | |
ATGAACTGACACAGAAAAGA+TGG | - | chr8.1:62410337-62410356 | MS.gene063856:CDS | 35.0% | |
CTACTACAAAATCATGGCAT+GGG | - | chr8.1:62410642-62410661 | MS.gene063856:CDS | 35.0% | |
GAAATCAAAATCCAAGTCGA+AGG | - | chr8.1:62409387-62409406 | MS.gene063856:CDS | 35.0% | |
GATCATTCTATTAGTCCTCA+AGG | - | chr8.1:62409574-62409593 | MS.gene063856:CDS | 35.0% | |
GCTTGAACAAATTTATGCTC+TGG | - | chr8.1:62410014-62410033 | MS.gene063856:CDS | 35.0% | |
GGAAAGGTAACAAACTTTCT+GGG | + | chr8.1:62411215-62411234 | None:intergenic | 35.0% | |
GTTAATGACAACAGCCAATT+CGG | - | chr8.1:62409532-62409551 | MS.gene063856:CDS | 35.0% | |
TAATAGTTCGATGAGATCTC+AGG | - | chr8.1:62410176-62410195 | MS.gene063856:CDS | 35.0% | |
TACGAAAATACAAGGTCGAA+TGG | - | chr8.1:62410612-62410631 | MS.gene063856:CDS | 35.0% | |
TCAAATTACCATCGCTTACA+AGG | + | chr8.1:62409975-62409994 | None:intergenic | 35.0% | |
TCTATGAATTCCATACCTTC+TGG | - | chr8.1:62410555-62410574 | MS.gene063856:CDS | 35.0% | |
TGAACTGACACAGAAAAGAT+GGG | - | chr8.1:62410338-62410357 | MS.gene063856:CDS | 35.0% | |
TGTTCCATGATCCTGAAAAT+AGG | - | chr8.1:62410283-62410302 | MS.gene063856:CDS | 35.0% | |
TTCTATTAGTCCTCAAGGAA+CGG | - | chr8.1:62409579-62409598 | MS.gene063856:CDS | 35.0% | |
TTGGCTGTTGTCATTAACTA+TGG | + | chr8.1:62409530-62409549 | None:intergenic | 35.0% | |
!! | GATTCCTATTTTCAGGATCA+TGG | + | chr8.1:62410290-62410309 | None:intergenic | 35.0% |
!! | TGTGCCTCCATTTTAACATA+CGG | + | chr8.1:62410423-62410442 | None:intergenic | 35.0% |
AAGACTTCTCCAAAGACTTC+CGG | - | chr8.1:62409433-62409452 | MS.gene063856:CDS | 40.0% | |
AAGCTGCAAACTCATCTACT+CGG | - | chr8.1:62409668-62409687 | MS.gene063856:CDS | 40.0% | |
AATATGTCCTTCCCAGCAAA+AGG | + | chr8.1:62411185-62411204 | None:intergenic | 40.0% | |
AATCATGGCATGGGAAATGT+CGG | - | chr8.1:62410651-62410670 | MS.gene063856:CDS | 40.0% | |
ACTAGATGTTCCAGAAGGTA+TGG | + | chr8.1:62410568-62410587 | None:intergenic | 40.0% | |
ACTCGGTTGGAATTTATACC+TGG | - | chr8.1:62409685-62409704 | MS.gene063856:CDS | 40.0% | |
ATATCGTGGCTATTTGAAGG+AGG | - | chr8.1:62409925-62409944 | MS.gene063856:CDS | 40.0% | |
ATATTCCCATGTATTTGGGC+CGG | - | chr8.1:62410716-62410735 | MS.gene063856:CDS | 40.0% | |
ATGGCCAGTTCTTATATGAC+TGG | - | chr8.1:62411095-62411114 | MS.gene063856:CDS | 40.0% | |
ATTACCATCGCTTACAAGGT+TGG | + | chr8.1:62409971-62409990 | None:intergenic | 40.0% | |
ATTCAGCTCACATTCACATG+TGG | - | chr8.1:62410935-62410954 | MS.gene063856:CDS | 40.0% | |
CAGTATCAATACAGCAGAGA+GGG | - | chr8.1:62410214-62410233 | MS.gene063856:CDS | 40.0% | |
CGATCCAGTCATATAAGAAC+TGG | + | chr8.1:62411102-62411121 | None:intergenic | 40.0% | |
CTGTGAAGGTGATCTTCAAA+AGG | - | chr8.1:62410086-62410105 | MS.gene063856:CDS | 40.0% | |
GAACTGACACAGAAAAGATG+GGG | - | chr8.1:62410339-62410358 | MS.gene063856:CDS | 40.0% | |
GACGGAAGAATGATTCATCA+AGG | - | chr8.1:62410462-62410481 | MS.gene063856:CDS | 40.0% | |
GATGAGATTGAAGAATCTGC+CGG | + | chr8.1:62410738-62410757 | None:intergenic | 40.0% | |
GATTCATCAAGGAGTAGGAA+GGG | - | chr8.1:62410473-62410492 | MS.gene063856:CDS | 40.0% | |
GATTCTTCAATCTCATCAGG+TGG | - | chr8.1:62410741-62410760 | MS.gene063856:CDS | 40.0% | |
GCAGATTCTTCAATCTCATC+AGG | - | chr8.1:62410738-62410757 | MS.gene063856:CDS | 40.0% | |
GCTCTCATCATTAGTAGATC+CGG | + | chr8.1:62409455-62409474 | None:intergenic | 40.0% | |
GTCACCGTATGTTAAAATGG+AGG | - | chr8.1:62410416-62410435 | MS.gene063856:CDS | 40.0% | |
TACCAACTAGATGTTCCAGA+AGG | + | chr8.1:62410573-62410592 | None:intergenic | 40.0% | |
TCAATCTCATCAGGTGGAAT+GGG | - | chr8.1:62410747-62410766 | MS.gene063856:CDS | 40.0% | |
TCAGTATCAATACAGCAGAG+AGG | - | chr8.1:62410213-62410232 | MS.gene063856:CDS | 40.0% | |
TCGATATCGTGGCTATTTGA+AGG | - | chr8.1:62409922-62409941 | MS.gene063856:CDS | 40.0% | |
TCTAATAACGGCAGTTGTTC+TGG | - | chr8.1:62409622-62409641 | MS.gene063856:CDS | 40.0% | |
TGAATGTGAGCTGAATGATC+TGG | + | chr8.1:62410931-62410950 | None:intergenic | 40.0% | |
TGATTCATCAAGGAGTAGGA+AGG | - | chr8.1:62410472-62410491 | MS.gene063856:CDS | 40.0% | |
TTAGTAGATCCGGAAGTCTT+TGG | + | chr8.1:62409445-62409464 | None:intergenic | 40.0% | |
TTCAATCTCATCAGGTGGAA+TGG | - | chr8.1:62410746-62410765 | MS.gene063856:CDS | 40.0% | |
TTCCGGCATACGAAAATACA+AGG | - | chr8.1:62410604-62410623 | MS.gene063856:CDS | 40.0% | |
TTGGAGTTTAGATTGCTCGT+CGG | - | chr8.1:62411007-62411026 | MS.gene063856:CDS | 40.0% | |
! | GACCTTGTATTTTCGTATGC+CGG | + | chr8.1:62410609-62410628 | None:intergenic | 40.0% |
! | GACTGTGGATTCCTATTTTC+AGG | + | chr8.1:62410297-62410316 | None:intergenic | 40.0% |
! | TGGTTGTGATAACGACAGAA+GGG | - | chr8.1:62409705-62409724 | MS.gene063856:CDS | 40.0% |
!! | CTTTTGAAGATCACCTTCAC+AGG | + | chr8.1:62410088-62410107 | None:intergenic | 40.0% |
!! | TACCTTCTGGAACATCTAGT+TGG | - | chr8.1:62410568-62410587 | MS.gene063856:CDS | 40.0% |
!! | TCACATGTGGATTGGAATAC+CGG | - | chr8.1:62410948-62410967 | MS.gene063856:CDS | 40.0% |
!! | TGAGAATGAGAAGGCATTGT+AGG | + | chr8.1:62410810-62410829 | None:intergenic | 40.0% |
AAAATCCAAGTCGAAGGCGA+AGG | - | chr8.1:62409393-62409412 | MS.gene063856:CDS | 45.0% | |
AAGGTGGAACTGTAAGTGCA+GGG | + | chr8.1:62410872-62410891 | None:intergenic | 45.0% | |
ACTACCAACCTTGTAAGCGA+TGG | - | chr8.1:62409964-62409983 | MS.gene063856:CDS | 45.0% | |
AGATCAGGTGATGTATGGCT+AGG | - | chr8.1:62411035-62411054 | MS.gene063856:CDS | 45.0% | |
AGATCCGACTGAAGAATGAG+AGG | - | chr8.1:62409731-62409750 | MS.gene063856:CDS | 45.0% | |
AGGGAAATTTCATCGTCTGC+TGG | - | chr8.1:62411140-62411159 | MS.gene063856:CDS | 45.0% | |
ATACGGTGACATTGCTTGCA+TGG | + | chr8.1:62410406-62410425 | None:intergenic | 45.0% | |
ATGACTGGATCGCGAAATGT+TGG | - | chr8.1:62411110-62411129 | MS.gene063856:CDS | 45.0% | |
CATCCAGATCAGGTGATGTA+TGG | - | chr8.1:62411030-62411049 | MS.gene063856:CDS | 45.0% | |
CATTCTCACCCTCAACATCA+CGG | - | chr8.1:62410822-62410841 | MS.gene063856:CDS | 45.0% | |
CATTCTTCCGTCGTTCCTAA+AGG | + | chr8.1:62410454-62410473 | None:intergenic | 45.0% | |
CGATTCAAGTGTAGAGACTG+TGG | + | chr8.1:62410312-62410331 | None:intergenic | 45.0% | |
CTTCTGTCGTTATCACAACC+AGG | + | chr8.1:62409706-62409725 | None:intergenic | 45.0% | |
GCTCACATTCACATGTGGAT+TGG | - | chr8.1:62410940-62410959 | MS.gene063856:CDS | 45.0% | |
GCTTCCTCTCATTCTTCAGT+CGG | + | chr8.1:62409738-62409757 | None:intergenic | 45.0% | |
GGGAGGTTTCTATAAACCGA+TGG | - | chr8.1:62410767-62410786 | MS.gene063856:CDS | 45.0% | |
GTGCGATCTCGAAACATCAT+TGG | - | chr8.1:62409492-62409511 | MS.gene063856:CDS | 45.0% | |
TAGCCATACATCACCTGATC+TGG | + | chr8.1:62411036-62411055 | None:intergenic | 45.0% | |
TGCAAACTCATCTACTCGGT+TGG | - | chr8.1:62409672-62409691 | MS.gene063856:CDS | 45.0% | |
TGTTGAGGGTGAGAATGAGA+AGG | + | chr8.1:62410819-62410838 | None:intergenic | 45.0% | |
TTACAGTTCCACCTTCCCTT+GGG | - | chr8.1:62410877-62410896 | MS.gene063856:CDS | 45.0% | |
TTGCGGTCATCAGAATCCAT+CGG | - | chr8.1:62410905-62410924 | MS.gene063856:CDS | 45.0% | |
! | ATTGGACCTCACCTTTTGCT+GGG | - | chr8.1:62411171-62411190 | MS.gene063856:CDS | 45.0% |
! | CTGGTTGTGATAACGACAGA+AGG | - | chr8.1:62409704-62409723 | MS.gene063856:CDS | 45.0% |
! | TGAAAAACAGCGCTGGGAAT+AGG | - | chr8.1:62411072-62411091 | MS.gene063856:CDS | 45.0% |
! | TGCTGTATTGATACTGACGC+TGG | + | chr8.1:62410210-62410229 | None:intergenic | 45.0% |
!! | ACATGTGGATTGGAATACCG+GGG | - | chr8.1:62410950-62410969 | MS.gene063856:CDS | 45.0% |
!! | CACATGTGGATTGGAATACC+GGG | - | chr8.1:62410949-62410968 | MS.gene063856:CDS | 45.0% |
!! | TGAGAAGGCATTGTAGGTGA+AGG | + | chr8.1:62410804-62410823 | None:intergenic | 45.0% |
AATCTGCCGGCCCAAATACA+TGG | + | chr8.1:62410725-62410744 | None:intergenic | 50.0% | |
AGAGCAGTTGTTGCCTGTGA+AGG | - | chr8.1:62410072-62410091 | MS.gene063856:CDS | 50.0% | |
AGGTGGAACTGTAAGTGCAG+GGG | + | chr8.1:62410871-62410890 | None:intergenic | 50.0% | |
ATCTCATCAGGTGGAATGGG+AGG | - | chr8.1:62410750-62410769 | MS.gene063856:CDS | 50.0% | |
ATCTGCCGGCCCAAATACAT+GGG | + | chr8.1:62410724-62410743 | None:intergenic | 50.0% | |
ATGACCGCAAAAGAGCCCAA+GGG | + | chr8.1:62410895-62410914 | None:intergenic | 50.0% | |
CGGCAGTTGTTCTGGTGAAT+CGG | - | chr8.1:62409630-62409649 | MS.gene063856:CDS | 50.0% | |
CGTCGTTGAAAAACAGCGCT+GGG | - | chr8.1:62411066-62411085 | MS.gene063856:CDS | 50.0% | |
CTTACAGTTCCACCTTCCCT+TGG | - | chr8.1:62410876-62410895 | MS.gene063856:CDS | 50.0% | |
GAAGGTGACGATGCAACCAT+CGG | + | chr8.1:62410786-62410805 | None:intergenic | 50.0% | |
GAAGGTGGAACTGTAAGTGC+AGG | + | chr8.1:62410873-62410892 | None:intergenic | 50.0% | |
GAGCTTGAGAAAGTTGCTGC+AGG | + | chr8.1:62410686-62410705 | None:intergenic | 50.0% | |
GTGCAGAAGTTAGTGGCGAT+GGG | - | chr8.1:62409841-62409860 | MS.gene063856:CDS | 50.0% | |
TACTCAGACACCGTTCCTTG+AGG | + | chr8.1:62409592-62409611 | None:intergenic | 50.0% | |
TCAAGGAGTAGGAAGGGAAC+AGG | - | chr8.1:62410479-62410498 | MS.gene063856:CDS | 50.0% | |
TCGTCGTTGAAAAACAGCGC+TGG | - | chr8.1:62411065-62411084 | MS.gene063856:CDS | 50.0% | |
TGTGCAGAAGTTAGTGGCGA+TGG | - | chr8.1:62409840-62409859 | MS.gene063856:CDS | 50.0% | |
! | AAACAGCGCTGGGAATAGGA+TGG | - | chr8.1:62411076-62411095 | MS.gene063856:CDS | 50.0% |
! | GATTGGACCTCACCTTTTGC+TGG | - | chr8.1:62411170-62411189 | MS.gene063856:CDS | 50.0% |
!! | CATGTGGATTGGAATACCGG+GGG | - | chr8.1:62410951-62410970 | MS.gene063856:CDS | 50.0% |
!! | TGTTTGGCATCGGCGAATTG+TGG | + | chr8.1:62410522-62410541 | None:intergenic | 50.0% |
AAGTGCAGGGGAAGATGCAG+CGG | + | chr8.1:62410859-62410878 | None:intergenic | 55.0% | |
ACCCTCAACATCACGGCTCA+CGG | - | chr8.1:62410829-62410848 | MS.gene063856:CDS | 55.0% | |
AGCACCAGAGACAGAGGGAA+AGG | - | chr8.1:62409755-62409774 | MS.gene063856:CDS | 55.0% | |
CAAAAGAGCCCAAGGGAAGG+TGG | + | chr8.1:62410888-62410907 | None:intergenic | 55.0% | |
CAAAGCCAACGTTGCTCGCT+CGG | + | chr8.1:62409875-62409894 | None:intergenic | 55.0% | |
CGTCTGCTGGATTGCGAGAT+TGG | - | chr8.1:62411153-62411172 | MS.gene063856:CDS | 55.0% | |
CTCTCCTTTCCCTCTGTCTC+TGG | + | chr8.1:62409762-62409781 | None:intergenic | 55.0% | |
GAATTCTTGCACCATGCCCC+CGG | + | chr8.1:62410970-62410989 | None:intergenic | 55.0% | |
GAGCTGAATGATCTGGCCGA+TGG | + | chr8.1:62410924-62410943 | None:intergenic | 55.0% | |
GATGACCGCAAAAGAGCCCA+AGG | + | chr8.1:62410896-62410915 | None:intergenic | 55.0% | |
GCGAAATGTTGGCACAGCGA+GGG | - | chr8.1:62411121-62411140 | MS.gene063856:CDS | 55.0% | |
GTCCTTCCCAGCAAAAGGTG+AGG | + | chr8.1:62411180-62411199 | None:intergenic | 55.0% | |
TCCGTGAGCCGTGATGTTGA+GGG | + | chr8.1:62410833-62410852 | None:intergenic | 55.0% | |
TCGAGATCGCACGCACTAGA+AGG | + | chr8.1:62409484-62409503 | None:intergenic | 55.0% | |
TTCCGTGAGCCGTGATGTTG+AGG | + | chr8.1:62410834-62410853 | None:intergenic | 55.0% | |
! | CCGAGTGCCTTTAGGAACGA+CGG | - | chr8.1:62410444-62410463 | MS.gene063856:CDS | 55.0% |
! | CCTTCCCTTGGGCTCTTTTG+CGG | - | chr8.1:62410888-62410907 | MS.gene063856:CDS | 55.0% |
! | GACCTCACCTTTTGCTGGGA+AGG | - | chr8.1:62411175-62411194 | MS.gene063856:CDS | 55.0% |
!! | AGAGGAAGCACCAGAGACAG+AGG | - | chr8.1:62409749-62409768 | MS.gene063856:CDS | 55.0% |
!! | CCGTCGTTCCTAAAGGCACT+CGG | + | chr8.1:62410447-62410466 | None:intergenic | 55.0% |
!! | GAGGAAGCACCAGAGACAGA+GGG | - | chr8.1:62409750-62409769 | MS.gene063856:CDS | 55.0% |
AGGCACAGCCGAGTGCCTTT+AGG | - | chr8.1:62410436-62410455 | MS.gene063856:CDS | 60.0% | |
CACTACCGAGCGAGCAACGT+TGG | - | chr8.1:62409867-62409886 | MS.gene063856:CDS | 60.0% | |
CCGCAAAAGAGCCCAAGGGA+AGG | + | chr8.1:62410891-62410910 | None:intergenic | 60.0% | |
CGCGAAATGTTGGCACAGCG+AGG | - | chr8.1:62411120-62411139 | MS.gene063856:CDS | 60.0% | |
GGATTGGAATACCGGGGGCA+TGG | - | chr8.1:62410956-62410975 | MS.gene063856:CDS | 60.0% | |
GTCGAAGGCGAAGGCTGCAA+AGG | - | chr8.1:62409402-62409421 | MS.gene063856:CDS | 60.0% | |
TGCAGCCTTCGCCTTCGACT+TGG | + | chr8.1:62409401-62409420 | None:intergenic | 60.0% | |
TGCTCGTCGGCATCCAGATC+AGG | - | chr8.1:62411020-62411039 | MS.gene063856:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 62409373 | 62411244 | 62409373 | ID=MS.gene063856 |
chr8.1 | mRNA | 62409373 | 62411244 | 62409373 | ID=MS.gene063856.t1;Parent=MS.gene063856 |
chr8.1 | exon | 62409373 | 62411244 | 62409373 | ID=MS.gene063856.t1.exon1;Parent=MS.gene063856.t1 |
chr8.1 | CDS | 62409373 | 62411244 | 62409373 | ID=cds.MS.gene063856.t1;Parent=MS.gene063856.t1 |
Gene Sequence |
Protein sequence |