Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06503.t1 | XP_013461538.1 | 96.3 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 1.10E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06503.t1 | Q9SRK5 | 77.3 | 163 | 36 | 1 | 58 | 219 | 53 | 215 | 4.7e-72 | 272.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06503.t1 | A0A072V2I1 | 96.3 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 8.1e-118 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene06503 | 0.820348 | 7.19E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene06503 | 0.808816 | 2.57E-50 | -1.69E-46 |
| MS.gene049230 | MS.gene06503 | 0.832985 | 6.91E-56 | -1.69E-46 |
| MS.gene049322 | MS.gene06503 | 0.807252 | 5.53E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene06503 | 0.877382 | 6.57E-69 | -1.69E-46 |
| MS.gene04984 | MS.gene06503 | 0.844456 | 7.47E-59 | -1.69E-46 |
| MS.gene04991 | MS.gene06503 | -0.86594 | 4.10E-65 | -1.69E-46 |
| MS.gene050114 | MS.gene06503 | 0.803853 | 2.86E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene06503 | 0.85295 | 3.30E-61 | -1.69E-46 |
| MS.gene050227 | MS.gene06503 | 0.844975 | 5.42E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene06503 | 0.844524 | 7.17E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene06503 | -0.853721 | 1.98E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene06503 | 0.814456 | 1.53E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene06503 | 0.865898 | 4.23E-65 | -1.69E-46 |
| MS.gene050763 | MS.gene06503 | 0.865679 | 4.96E-65 | -1.69E-46 |
| MS.gene051210 | MS.gene06503 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene06503 | 0.826169 | 3.14E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene06503 | 0.812592 | 3.92E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene06503 | 0.831694 | 1.44E-55 | -1.69E-46 |
| MS.gene052176 | MS.gene06503 | 0.833823 | 4.27E-56 | -1.69E-46 |
| MS.gene052389 | MS.gene06503 | 0.832268 | 1.04E-55 | -1.69E-46 |
| MS.gene054095 | MS.gene06503 | 0.818969 | 1.49E-52 | -1.69E-46 |
| MS.gene054098 | MS.gene06503 | 0.814428 | 1.55E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene06503 | 0.866904 | 2.03E-65 | -1.69E-46 |
| MS.gene054930 | MS.gene06503 | 0.865298 | 6.54E-65 | -1.69E-46 |
| MS.gene055441 | MS.gene06503 | 0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene06503 | 0.820386 | 7.05E-53 | -1.69E-46 |
| MS.gene056464 | MS.gene06503 | -0.811161 | 8.04E-51 | -1.69E-46 |
| MS.gene056849 | MS.gene06503 | 0.845571 | 3.74E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene06503 | 0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene06503 | -0.811075 | 8.39E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene06503 | 0.819619 | 1.06E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene06503 | 0.806266 | 8.94E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene06503 | 0.867651 | 1.17E-65 | -1.69E-46 |
| MS.gene060297 | MS.gene06503 | 0.84517 | 4.80E-59 | -1.69E-46 |
| MS.gene060869 | MS.gene06503 | 0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene060940 | MS.gene06503 | 0.82508 | 5.70E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06503.t1 | MTR_3g094300 | 96.347 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 1.06e-160 | 445 |
| MS.gene06503.t1 | MTR_1g090867 | 45.806 | 155 | 77 | 3 | 66 | 214 | 68 | 221 | 1.17e-35 | 129 |
| MS.gene06503.t1 | MTR_7g034465 | 33.636 | 220 | 135 | 5 | 2 | 218 | 141 | 352 | 2.35e-24 | 100 |
| MS.gene06503.t1 | MTR_7g034465 | 33.636 | 220 | 135 | 5 | 2 | 218 | 247 | 458 | 4.85e-24 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06503.t1 | AT3G10940 | 68.394 | 193 | 52 | 3 | 28 | 219 | 31 | 215 | 2.76e-95 | 280 |
| MS.gene06503.t1 | AT3G52180 | 46.358 | 151 | 79 | 2 | 65 | 214 | 66 | 215 | 1.17e-37 | 132 |
| MS.gene06503.t1 | AT3G52180 | 46.358 | 151 | 79 | 2 | 65 | 214 | 66 | 215 | 1.73e-37 | 132 |
| MS.gene06503.t1 | AT3G52180 | 46.358 | 151 | 79 | 2 | 65 | 214 | 66 | 215 | 1.35e-36 | 132 |
| MS.gene06503.t1 | AT3G52180 | 49.587 | 121 | 59 | 2 | 95 | 214 | 1 | 120 | 1.04e-30 | 114 |
| MS.gene06503.t1 | AT3G01510 | 35.407 | 209 | 126 | 5 | 9 | 217 | 69 | 268 | 2.07e-24 | 100 |
| MS.gene06503.t1 | AT3G01510 | 35.407 | 209 | 126 | 5 | 9 | 217 | 69 | 268 | 2.07e-24 | 100 |
| MS.gene06503.t1 | AT3G01510 | 35.407 | 209 | 126 | 5 | 9 | 217 | 211 | 410 | 2.93e-24 | 100 |
Find 42 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAATTGCTTATTTGTTC+TGG | 0.251643 | 3.2:-79066320 | MS.gene06503:CDS |
| TTCAACATTCAGAGCTTCTT+TGG | 0.262998 | 3.2:-79068381 | MS.gene06503:CDS |
| TCTAAGGATGACACTGCTTT+AGG | 0.291760 | 3.2:+79066414 | None:intergenic |
| TTAAGGTGATCTACATCTTC+AGG | 0.294100 | 3.2:+79067076 | None:intergenic |
| CTCAGAAATTGCCCATTCTA+AGG | 0.297875 | 3.2:+79066398 | None:intergenic |
| CCACACCTTCTTCCTTCTTA+AGG | 0.313968 | 3.2:+79067059 | None:intergenic |
| AGGATAAGGATGCTGAGTTT+TGG | 0.315172 | 3.2:-79067015 | MS.gene06503:CDS |
| ATCTTCAGGTTTCTGTGGTT+GGG | 0.320424 | 3.2:+79067090 | None:intergenic |
| TTCCTATCAACTACTCTATT+AGG | 0.347716 | 3.2:-79068304 | MS.gene06503:CDS |
| AGTGCACTTCGCAAAGAGTT+TGG | 0.350408 | 3.2:+79066438 | None:intergenic |
| CATCTTCAGGTTTCTGTGGT+TGG | 0.355320 | 3.2:+79067089 | None:intergenic |
| TCTAAACTTGCAACAGGATA+AGG | 0.402340 | 3.2:-79067029 | MS.gene06503:CDS |
| ATCTAAATCTAATGATTTGA+TGG | 0.417040 | 3.2:-79068216 | MS.gene06503:CDS |
| TTATGAGTATCATCACGATC+TGG | 0.441184 | 3.2:-79068153 | MS.gene06503:CDS |
| ATATATTCTAAACTTGCAAC+AGG | 0.450710 | 3.2:-79067035 | MS.gene06503:CDS |
| AGATCGTGATGATACTCATA+AGG | 0.451970 | 3.2:+79068155 | None:intergenic |
| AAGAGAATCCTACCAGCAAA+AGG | 0.453326 | 3.2:-79068241 | MS.gene06503:CDS |
| AAGCAGTGTCATCCTTAGAA+TGG | 0.458306 | 3.2:-79066410 | MS.gene06503:CDS |
| TTCCTAATAGAGTAGTTGAT+AGG | 0.475540 | 3.2:+79068302 | None:intergenic |
| AAATAAGCAATTGTCACTGC+TGG | 0.476094 | 3.2:+79066327 | None:intergenic |
| ATAACTGACAATTTGATTGT+GGG | 0.477333 | 3.2:-79067115 | MS.gene06503:CDS |
| TATAACTGACAATTTGATTG+TGG | 0.487738 | 3.2:-79067116 | MS.gene06503:CDS |
| GTTTATGTGCACTGTACTGC+AGG | 0.506912 | 3.2:-79066363 | MS.gene06503:CDS |
| AGCAGTGTCATCCTTAGAAT+GGG | 0.512745 | 3.2:-79066409 | MS.gene06503:CDS |
| ATGGAAAGTGTAAGTAACAT+TGG | 0.515333 | 3.2:-79068410 | MS.gene06503:CDS |
| GATCGTGATGATACTCATAA+GGG | 0.517872 | 3.2:+79068156 | None:intergenic |
| TGGGCAATTTCTGAGGGAAA+AGG | 0.518950 | 3.2:-79066390 | MS.gene06503:CDS |
| TGTTGTACACTATCAGAAAG+TGG | 0.520687 | 3.2:-79068269 | MS.gene06503:CDS |
| GTTGTACACTATCAGAAAGT+GGG | 0.529921 | 3.2:-79068268 | MS.gene06503:CDS |
| CTTAGAATGGGCAATTTCTG+AGG | 0.532588 | 3.2:-79066397 | MS.gene06503:CDS |
| TCTACATCTTCAGGTTTCTG+TGG | 0.534119 | 3.2:+79067085 | None:intergenic |
| TATGAGTATCATCACGATCT+GGG | 0.535409 | 3.2:-79068152 | MS.gene06503:intron |
| GTGCACTGTACTGCAGGACT+TGG | 0.536912 | 3.2:-79066357 | MS.gene06503:CDS |
| GATCACCTTAAGAAGGAAGA+AGG | 0.559918 | 3.2:-79067064 | MS.gene06503:CDS |
| AGAGAATCCTACCAGCAAAA+GGG | 0.572763 | 3.2:-79068240 | MS.gene06503:CDS |
| TTAGAATGGGCAATTTCTGA+GGG | 0.579734 | 3.2:-79066396 | MS.gene06503:CDS |
| TAACTGACAATTTGATTGTG+GGG | 0.583931 | 3.2:-79067114 | MS.gene06503:CDS |
| AGATGTAGATCACCTTAAGA+AGG | 0.584321 | 3.2:-79067071 | MS.gene06503:CDS |
| TAGCTATGAAGAAGATGATG+AGG | 0.589831 | 3.2:-79068181 | MS.gene06503:CDS |
| CAAAAGTACTTTCAAAGCAG+AGG | 0.607347 | 3.2:-79068355 | MS.gene06503:CDS |
| CCTTAAGAAGGAAGAAGGTG+TGG | 0.624960 | 3.2:-79067059 | MS.gene06503:CDS |
| AACTTGAAATTAGACACATG+AGG | 0.731891 | 3.2:-79066955 | MS.gene06503:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATTAATGAAAAATAAT+TGG | + | chr3.2:79067501-79067520 | None:intergenic | 10.0% |
| !!! | ATCACATTTTTAAAAAAATT+GGG | + | chr3.2:79067998-79068017 | None:intergenic | 10.0% |
| !!! | TATCACATTTTTAAAAAAAT+TGG | + | chr3.2:79067999-79068018 | None:intergenic | 10.0% |
| !!! | TTTTGTTTATTTACATTATT+AGG | - | chr3.2:79068240-79068259 | MS.gene06503:CDS | 10.0% |
| !! | CTAAATTAATGTACTAAAAA+GGG | + | chr3.2:79067802-79067821 | None:intergenic | 15.0% |
| !! | TAAATTAATGTACTAAAAAG+GGG | + | chr3.2:79067801-79067820 | None:intergenic | 15.0% |
| !! | TCTAAATTAATGTACTAAAA+AGG | + | chr3.2:79067803-79067822 | None:intergenic | 15.0% |
| !!! | AAAAATAATTGGTTTTCTTA+GGG | + | chr3.2:79067490-79067509 | None:intergenic | 15.0% |
| !!! | AGAAAAACATATTTTGAAAT+TGG | - | chr3.2:79066982-79067001 | MS.gene06503:CDS | 15.0% |
| !!! | TCACATTTTTAAAAAAATTG+GGG | + | chr3.2:79067997-79068016 | None:intergenic | 15.0% |
| !! | AATTGAATTTACATAGGAAT+TGG | + | chr3.2:79066628-79066647 | None:intergenic | 20.0% |
| !! | ATCTAAATCTAATGATTTGA+TGG | - | chr3.2:79066499-79066518 | MS.gene06503:intron | 20.0% |
| !! | TATAATTCATACCTGAAATT+AGG | + | chr3.2:79067575-79067594 | None:intergenic | 20.0% |
| !!! | GAAAAATAATTGGTTTTCTT+AGG | + | chr3.2:79067491-79067510 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAAATTGGGGAAA+GGG | + | chr3.2:79067991-79068010 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAAAATTGGGGAA+AGG | + | chr3.2:79067992-79068011 | None:intergenic | 20.0% |
| ! | AAACAAGATACTATTGGAAT+GGG | + | chr3.2:79067132-79067151 | None:intergenic | 25.0% |
| ! | ACTAAATATGTTTGTAGCTT+AGG | - | chr3.2:79068032-79068051 | MS.gene06503:intron | 25.0% |
| ! | AGTAGCAATTGAATTTACAT+AGG | + | chr3.2:79066634-79066653 | None:intergenic | 25.0% |
| ! | ATAACTGACAATTTGATTGT+GGG | - | chr3.2:79067600-79067619 | MS.gene06503:intron | 25.0% |
| ! | ATAGGAATGAATGAAATTGT+TGG | - | chr3.2:79066696-79066715 | MS.gene06503:intron | 25.0% |
| ! | ATATATTCTAAACTTGCAAC+AGG | - | chr3.2:79067680-79067699 | MS.gene06503:intron | 25.0% |
| ! | GAAAGCAACTTATATGAAAA+TGG | + | chr3.2:79067253-79067272 | None:intergenic | 25.0% |
| ! | GAAATTATCATCATTTGAAG+TGG | + | chr3.2:79067968-79067987 | None:intergenic | 25.0% |
| ! | GTCTTTATACACTAAAATTG+TGG | - | chr3.2:79067018-79067037 | MS.gene06503:CDS | 25.0% |
| ! | TAATTCAATCAAGAACAAGT+AGG | + | chr3.2:79068211-79068230 | None:intergenic | 25.0% |
| ! | TATAACTGACAATTTGATTG+TGG | - | chr3.2:79067599-79067618 | MS.gene06503:intron | 25.0% |
| ! | TTATCCAAACAAGATACTAT+TGG | + | chr3.2:79067138-79067157 | None:intergenic | 25.0% |
| ! | TTTAAAAAAATTGGGGAAAG+GGG | + | chr3.2:79067990-79068009 | None:intergenic | 25.0% |
| !! | ACTTTTACAATTCATGTGAA+TGG | - | chr3.2:79067464-79067483 | MS.gene06503:intron | 25.0% |
| !! | TCTCCATTTCTTTTCAAAAT+TGG | + | chr3.2:79066925-79066944 | None:intergenic | 25.0% |
| !! | TTAGGTTGTATTAGGAAATA+GGG | - | chr3.2:79068050-79068069 | MS.gene06503:intron | 25.0% |
| !!! | TATAGTTTTCGAGTTTATAG+AGG | - | chr3.2:79066955-79066974 | MS.gene06503:CDS | 25.0% |
| !!! | TTTTTTTCCTTCATTGCATT+TGG | - | chr3.2:79066784-79066803 | MS.gene06503:intron | 25.0% |
| AAAGCAGAGGAAACAAAAAT+CGG | - | chr3.2:79066373-79066392 | MS.gene06503:CDS | 30.0% | |
| AACTTGAAATTAGACACATG+AGG | - | chr3.2:79067760-79067779 | MS.gene06503:intron | 30.0% | |
| ATAGGAATTGGCAAAACAAA+TGG | + | chr3.2:79066616-79066635 | None:intergenic | 30.0% | |
| CAAACAAGATACTATTGGAA+TGG | + | chr3.2:79067133-79067152 | None:intergenic | 30.0% | |
| CAATTTATATGCACACTTCA+AGG | - | chr3.2:79068093-79068112 | MS.gene06503:intron | 30.0% | |
| CATTCCAATAGTATCTTGTT+TGG | - | chr3.2:79067131-79067150 | MS.gene06503:CDS | 30.0% | |
| CTAGATTATCACATAATGCA+TGG | + | chr3.2:79067839-79067858 | None:intergenic | 30.0% | |
| CTTCTATAAACTATCTCAGA+TGG | + | chr3.2:79067281-79067300 | None:intergenic | 30.0% | |
| CTTGAAACTATTTCAAGAGT+CGG | + | chr3.2:79068172-79068191 | None:intergenic | 30.0% | |
| CTTGAAGTGTGCATATAAAT+TGG | + | chr3.2:79068095-79068114 | None:intergenic | 30.0% | |
| TAACTGACAATTTGATTGTG+GGG | - | chr3.2:79067601-79067620 | MS.gene06503:intron | 30.0% | |
| TAGGAATTGGCAAAACAAAT+GGG | + | chr3.2:79066615-79066634 | None:intergenic | 30.0% | |
| TATGAATACTCTTGAGAGAT+AGG | - | chr3.2:79066678-79066697 | MS.gene06503:intron | 30.0% | |
| TGACAATTGCTTATTTGTTC+TGG | - | chr3.2:79068395-79068414 | MS.gene06503:CDS | 30.0% | |
| TTCCTAATAGAGTAGTTGAT+AGG | + | chr3.2:79066416-79066435 | None:intergenic | 30.0% | |
| TTCCTATCAACTACTCTATT+AGG | - | chr3.2:79066411-79066430 | MS.gene06503:CDS | 30.0% | |
| ! | ATAGAAGTATAGAACTACGA+AGG | - | chr3.2:79066755-79066774 | MS.gene06503:intron | 30.0% |
| ! | ATGGAAAGTGTAAGTAACAT+TGG | - | chr3.2:79066305-79066324 | MS.gene06503:CDS | 30.0% |
| ! | CTTAGGTTGTATTAGGAAAT+AGG | - | chr3.2:79068049-79068068 | MS.gene06503:intron | 30.0% |
| ! | CTTTTAGATTTAAACCGGAA+GGG | - | chr3.2:79066848-79066867 | MS.gene06503:intron | 30.0% |
| ! | TGTGCCTTTTAGATTTAAAC+CGG | - | chr3.2:79066843-79066862 | MS.gene06503:intron | 30.0% |
| ! | TTTGTAGCTTAGGTTGTATT+AGG | - | chr3.2:79068042-79068061 | MS.gene06503:intron | 30.0% |
| !! | GCTCCAATTTTGAAAAGAAA+TGG | - | chr3.2:79066919-79066938 | MS.gene06503:intron | 30.0% |
| !!! | TTGCATTTTAGGATCTGTTT+GGG | + | chr3.2:79067391-79067410 | None:intergenic | 30.0% |
| !!! | TTTGCATTTTAGGATCTGTT+TGG | + | chr3.2:79067392-79067411 | None:intergenic | 30.0% |
| AAATAAGCAATTGTCACTGC+TGG | + | chr3.2:79068391-79068410 | None:intergenic | 35.0% | |
| ACACAAACCAAATGCAATGA+AGG | + | chr3.2:79066794-79066813 | None:intergenic | 35.0% | |
| AGATCGTGATGATACTCATA+AGG | + | chr3.2:79066563-79066582 | None:intergenic | 35.0% | |
| AGATGTAGATCACCTTAAGA+AGG | - | chr3.2:79067644-79067663 | MS.gene06503:intron | 35.0% | |
| CCTTCCGGTTTAAATCTAAA+AGG | + | chr3.2:79066850-79066869 | None:intergenic | 35.0% | |
| GATCGTGATGATACTCATAA+GGG | + | chr3.2:79066562-79066581 | None:intergenic | 35.0% | |
| GCTACTGTTGCATTAGATTT+AGG | - | chr3.2:79066718-79066737 | MS.gene06503:intron | 35.0% | |
| GTTGTACACTATCAGAAAGT+GGG | - | chr3.2:79066447-79066466 | MS.gene06503:CDS | 35.0% | |
| TAGCTATGAAGAAGATGATG+AGG | - | chr3.2:79066534-79066553 | MS.gene06503:intron | 35.0% | |
| TATCAGTGATGCCTAATTTC+AGG | - | chr3.2:79067561-79067580 | MS.gene06503:intron | 35.0% | |
| TATGAGTATCATCACGATCT+GGG | - | chr3.2:79066563-79066582 | MS.gene06503:intron | 35.0% | |
| TCTAAACTTGCAACAGGATA+AGG | - | chr3.2:79067686-79067705 | MS.gene06503:intron | 35.0% | |
| TGAAATGTTAGCTCAACAGT+AGG | - | chr3.2:79067869-79067888 | MS.gene06503:intron | 35.0% | |
| TGTTGTACACTATCAGAAAG+TGG | - | chr3.2:79066446-79066465 | MS.gene06503:CDS | 35.0% | |
| TTAAGGTGATCTACATCTTC+AGG | + | chr3.2:79067642-79067661 | None:intergenic | 35.0% | |
| TTAGAATGGGCAATTTCTGA+GGG | - | chr3.2:79068319-79068338 | MS.gene06503:CDS | 35.0% | |
| TTATGAGTATCATCACGATC+TGG | - | chr3.2:79066562-79066581 | MS.gene06503:intron | 35.0% | |
| TTCAACATTCAGAGCTTCTT+TGG | - | chr3.2:79066334-79066353 | MS.gene06503:CDS | 35.0% | |
| ! | AAAATCGGCATGCAGTTTTA+TGG | - | chr3.2:79066388-79066407 | MS.gene06503:CDS | 35.0% |
| ! | AGATTTAGATACCCTTTTGC+TGG | + | chr3.2:79066489-79066508 | None:intergenic | 35.0% |
| ! | ATCATTTGAAGTGGCACTAA+GGG | + | chr3.2:79067959-79067978 | None:intergenic | 35.0% |
| ! | CAGCACAAAGTTTGCATTTT+AGG | + | chr3.2:79067402-79067421 | None:intergenic | 35.0% |
| ! | CCTTTTAGATTTAAACCGGA+AGG | - | chr3.2:79066847-79066866 | MS.gene06503:intron | 35.0% |
| !! | CAAAAGTACTTTCAAAGCAG+AGG | - | chr3.2:79066360-79066379 | MS.gene06503:CDS | 35.0% |
| AAGAGAATCCTACCAGCAAA+AGG | - | chr3.2:79066474-79066493 | MS.gene06503:intron | 40.0% | |
| AAGCAGTGTCATCCTTAGAA+TGG | - | chr3.2:79068305-79068324 | MS.gene06503:CDS | 40.0% | |
| AGAGAATCCTACCAGCAAAA+GGG | - | chr3.2:79066475-79066494 | MS.gene06503:intron | 40.0% | |
| AGCAGTGTCATCCTTAGAAT+GGG | - | chr3.2:79068306-79068325 | MS.gene06503:CDS | 40.0% | |
| CAGCTTATGACAAAAGCTGA+TGG | - | chr3.2:79067312-79067331 | MS.gene06503:intron | 40.0% | |
| CTCAACCACTGAACATAACA+GGG | + | chr3.2:79067094-79067113 | None:intergenic | 40.0% | |
| CTCAGAAATTGCCCATTCTA+AGG | + | chr3.2:79068320-79068339 | None:intergenic | 40.0% | |
| CTCTGGCGTTGTAATTTCTA+GGG | - | chr3.2:79067895-79067914 | MS.gene06503:intron | 40.0% | |
| CTTAGAATGGGCAATTTCTG+AGG | - | chr3.2:79068318-79068337 | MS.gene06503:CDS | 40.0% | |
| GATACTATTGGAATGGGAAG+TGG | + | chr3.2:79067126-79067145 | None:intergenic | 40.0% | |
| GATCACCTTAAGAAGGAAGA+AGG | - | chr3.2:79067651-79067670 | MS.gene06503:intron | 40.0% | |
| GATCTCTACTGAAACTCCTT+CGG | + | chr3.2:79066882-79066901 | None:intergenic | 40.0% | |
| TCAACCACTGAACATAACAG+GGG | + | chr3.2:79067093-79067112 | None:intergenic | 40.0% | |
| TCTAAGGATGACACTGCTTT+AGG | + | chr3.2:79068304-79068323 | None:intergenic | 40.0% | |
| TCTCAACCACTGAACATAAC+AGG | + | chr3.2:79067095-79067114 | None:intergenic | 40.0% | |
| TCTCTGGCGTTGTAATTTCT+AGG | - | chr3.2:79067894-79067913 | MS.gene06503:intron | 40.0% | |
| ! | AGGATAAGGATGCTGAGTTT+TGG | - | chr3.2:79067700-79067719 | MS.gene06503:intron | 40.0% |
| ! | ATCTTCAGGTTTCTGTGGTT+GGG | + | chr3.2:79067628-79067647 | None:intergenic | 40.0% |
| ! | CATCATTTGAAGTGGCACTA+AGG | + | chr3.2:79067960-79067979 | None:intergenic | 40.0% |
| ! | CTAAAAAGGGGTTTGCTTAC+AGG | + | chr3.2:79067789-79067808 | None:intergenic | 40.0% |
| ! | GATAAGGATGCTGAGTTTTG+GGG | - | chr3.2:79067702-79067721 | MS.gene06503:intron | 40.0% |
| ! | GGAGCTTTTCAGAAATGAAG+AGG | + | chr3.2:79066904-79066923 | None:intergenic | 40.0% |
| ! | GGATAAGGATGCTGAGTTTT+GGG | - | chr3.2:79067701-79067720 | MS.gene06503:intron | 40.0% |
| ! | TCTACATCTTCAGGTTTCTG+TGG | + | chr3.2:79067633-79067652 | None:intergenic | 40.0% |
| ! | TTAGATACCCTTTTGCTGGT+AGG | + | chr3.2:79066485-79066504 | None:intergenic | 40.0% |
| ACAGAATCCAAAACACGTCG+AGG | - | chr3.2:79067918-79067937 | MS.gene06503:intron | 45.0% | |
| AGTGCACTTCGCAAAGAGTT+TGG | + | chr3.2:79068280-79068299 | None:intergenic | 45.0% | |
| CCACACCTTCTTCCTTCTTA+AGG | + | chr3.2:79067659-79067678 | None:intergenic | 45.0% | |
| CCTTAAGAAGGAAGAAGGTG+TGG | - | chr3.2:79067656-79067675 | MS.gene06503:intron | 45.0% | |
| CGTCGAGGACGATTGTAAAA+TGG | - | chr3.2:79067933-79067952 | MS.gene06503:intron | 45.0% | |
| GTTTATGTGCACTGTACTGC+AGG | - | chr3.2:79068352-79068371 | MS.gene06503:CDS | 45.0% | |
| TCTACCCCTGTTATGTTCAG+TGG | - | chr3.2:79067086-79067105 | MS.gene06503:CDS | 45.0% | |
| TTTAAACCGGAAGGGTGATG+TGG | - | chr3.2:79066856-79066875 | MS.gene06503:intron | 45.0% | |
| ! | CATCTTCAGGTTTCTGTGGT+TGG | + | chr3.2:79067629-79067648 | None:intergenic | 45.0% |
| ! | TGGGCAATTTCTGAGGGAAA+AGG | - | chr3.2:79068325-79068344 | MS.gene06503:CDS | 45.0% |
| AGCTCAACAGTAGGAGTCTC+TGG | - | chr3.2:79067878-79067897 | MS.gene06503:intron | 50.0% | |
| ! | CAATCGTCCTCGACGTGTTT+TGG | + | chr3.2:79067928-79067947 | None:intergenic | 50.0% |
| GTGCACTGTACTGCAGGACT+TGG | - | chr3.2:79068358-79068377 | MS.gene06503:CDS | 55.0% | |
| CTTCGGCCACATCACCCTTC+CGG | + | chr3.2:79066865-79066884 | None:intergenic | 60.0% | |
| CGGAAGGGTGATGTGGCCGA+AGG | - | chr3.2:79066863-79066882 | MS.gene06503:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 79066305 | 79068432 | 79066305 | ID=MS.gene06503 |
| chr3.2 | mRNA | 79066305 | 79068432 | 79066305 | ID=MS.gene06503.t1;Parent=MS.gene06503 |
| chr3.2 | exon | 79068153 | 79068432 | 79068153 | ID=MS.gene06503.t1.exon1;Parent=MS.gene06503.t1 |
| chr3.2 | CDS | 79068153 | 79068432 | 79068153 | ID=cds.MS.gene06503.t1;Parent=MS.gene06503.t1 |
| chr3.2 | exon | 79066949 | 79067154 | 79066949 | ID=MS.gene06503.t1.exon2;Parent=MS.gene06503.t1 |
| chr3.2 | CDS | 79066949 | 79067154 | 79066949 | ID=cds.MS.gene06503.t1;Parent=MS.gene06503.t1 |
| chr3.2 | exon | 79066305 | 79066475 | 79066305 | ID=MS.gene06503.t1.exon3;Parent=MS.gene06503.t1 |
| chr3.2 | CDS | 79066305 | 79066475 | 79066305 | ID=cds.MS.gene06503.t1;Parent=MS.gene06503.t1 |
| Gene Sequence |
| Protein sequence |
