AlfalfaGEDB | MS.gene065033

M. sativa cultivar XinJiangDaYe / MS.gene065033

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF13812.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065033.t1	XP_024628008.1	95.4	584	27	0	1	584	84	667	0.00E+00	1138.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065033.t1	Q9FLZ9	53.8	584	267	2	1	581	86	669	1.5e-189	664.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065033.t1	A0A396JYG2	95.4	584	27	0	1	584	84	667	0.0e+00	1138.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene065033	PPI
MS.gene016743	MS.gene065033	PPI
MS.gene035518	MS.gene065033	PPI
MS.gene050508	MS.gene065033	PPI
MS.gene057886	MS.gene065033	PPI
MS.gene065033	MS.gene070507	PPI
MS.gene065033	MS.gene46131	PPI
MS.gene065033	MS.gene000829	PPI
MS.gene065033	MS.gene057884	PPI
MS.gene065033	MS.gene46144	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065033.t1	MTR_1g112500	95.181	581	28	0	1	581	84	664	0.0	1160
MS.gene065033.t1	MTR_1g112500	28.017	464	329	4	53	514	34	494	2.22e-53	194
MS.gene065033.t1	MTR_1g112500	23.779	307	227	6	248	553	27	327	2.40e-14	76.6
MS.gene065033.t1	MTR_1g112500	28.689	122	84	2	337	457	15	134	8.60e-12	68.6
MS.gene065033.t1	MTR_3g011950	40.325	553	325	3	32	583	138	686	4.77e-135	413
MS.gene065033.t1	MTR_3g011950	29.501	461	321	3	58	518	61	517	5.18e-60	214
MS.gene065033.t1	MTR_8g086560	38.038	581	356	3	1	581	166	742	5.03e-135	416
MS.gene065033.t1	MTR_8g086560	30.917	469	318	4	33	500	96	559	5.80e-68	237
MS.gene065033.t1	MTR_8g086560	29.167	312	215	4	205	516	68	373	1.12e-27	119
MS.gene065033.t1	MTR_3g011940	37.564	583	361	2	1	583	89	668	1.57e-134	413

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065033.t1	AT5G39350	53.767	584	267	2	1	581	86	669	0.0	667
MS.gene065033.t1	AT5G39350	27.837	467	327	5	58	518	41	503	5.87e-49	181
MS.gene065033.t1	AT4G18750	39.931	576	342	3	7	581	172	744	1.11e-147	447
MS.gene065033.t1	AT4G18750	29.122	467	321	5	2	465	68	527	1.92e-60	216
MS.gene065033.t1	AT4G18750	30.607	428	271	6	1	415	267	681	1.87e-54	199
MS.gene065033.t1	AT3G01580	39.478	575	337	7	13	581	43	612	6.24e-143	429
MS.gene065033.t1	AT3G01580	30.807	409	280	3	1	406	133	541	1.97e-57	204
MS.gene065033.t1	AT3G01580	28.146	437	307	6	85	518	13	445	8.83e-57	202
MS.gene065033.t1	AT1G11290	38.765	583	354	2	1	583	106	685	4.44e-139	424
MS.gene065033.t1	AT1G11290	27.826	460	328	3	59	518	62	517	6.09e-59	211

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Find 150 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTTAAGTGCATCAT+TGG	0.362764	1.2:+83267998	None:intergenic
AAAGCATGGATACGGTAAAA+GGG	0.579278	1.2:-83266791	MS.gene065033:CDS
AACATGTTAAGTGCATCATT+GGG	0.548699	1.2:+83267999	None:intergenic
AACTGGGAGAGATAGCTGCT+AGG	0.672806	1.2:-83266465	MS.gene065033:CDS
AACTTTATGCTGCTGTAGGA+AGG	0.526788	1.2:-83266390	MS.gene065033:CDS
AAGACAAGGATATTATTATT+TGG	0.223793	1.2:-83266837	MS.gene065033:CDS
AAGAGAAGGATGTGGTGACT+TGG	0.530012	1.2:-83267449	MS.gene065033:CDS
AAGCACGTTTGTTGTTGAAT+GGG	0.524243	1.2:-83267476	MS.gene065033:CDS
AAGGCAAAACATTGAGTCTG+AGG	0.581494	1.2:-83267250	MS.gene065033:CDS
ACACACAACCATGCCGTATG+GGG	0.612049	1.2:-83266526	MS.gene065033:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATGTTAAGTGCATCAT+TGG	+	chr1.2:83266331-83266350	None:intergenic	30.0%
AACATGTTAAGTGCATCATT+GGG	+	chr1.2:83266330-83266349	None:intergenic	30.0%
ACTTGGACAACTTTGATTAA+TGG	-	chr1.2:83266894-83266913	MS.gene065033:CDS	30.0%
AGGAATATGGTAAATGAAGT+GGG	-	chr1.2:83267980-83267999	MS.gene065033:CDS	30.0%
ATAATATCCTTGTCTTTGAG+AGG	+	chr1.2:83267485-83267504	None:intergenic	30.0%
ATGTATGTCAAATGCAATGA+TGG	-	chr1.2:83267125-83267144	MS.gene065033:CDS	30.0%
ATTTGGACTGCAATAATTGA+TGG	-	chr1.2:83267506-83267525	MS.gene065033:CDS	30.0%
CATGTATAATGATCAACACT+AGG	+	chr1.2:83267710-83267729	None:intergenic	30.0%
CGTGGAATACTTTGATTAAT+GGG	-	chr1.2:83266592-83266611	MS.gene065033:CDS	30.0%
GATACATGAAAATGTTGAAC+TGG	-	chr1.2:83267844-83267863	MS.gene065033:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	83266297	83268051	83266297	ID=MS.gene065033
chr1.2	mRNA	83266297	83268051	83266297	ID=MS.gene065033.t1;Parent=MS.gene065033
chr1.2	exon	83266297	83268051	83266297	ID=MS.gene065033.t1.exon1;Parent=MS.gene065033.t1
chr1.2	CDS	83266297	83268051	83266297	ID=cds.MS.gene065033.t1;Parent=MS.gene065033.t1

Gene Sequence

>MS.gene065033

ATGATTAGGATGTATGTTCAAATGGGCCGTCCCAATGATGCACTTAACATGTTTGTTGAAATGTTTCATTCGGGTCGGGCTATGCCGGATCACTTTACGTACCCGATCGTTATTAAGGCTTGTAGTGAGTTGTTGTTTGTTGATACGGGTGTTGGAGTTCATGGGCAGACTGTTAAGTGTGGGTTTGATTTGGACAGCTTTGTGCAGAATTCTTTGTTGGCAATGTATATGAATGTTGGGGAGAAAGAAGCGGCGCGGTTGGTTTTTGAGTTGATGCAGGAACGGACAGTTGTGTCGTGGAATACTTTGATTAATGGGTTGTTTCGGAATAACTGTGCGGAGGAGGCGTTGAGGGTTTATGGTAGAATGATGGATGAGGGTGTGGGAGTTGATTGTGCGACTGTGGTTTCGGTTTTGCAGGCTTGTGGGGTTTTAAAGAATGTGGTGCTTGGGAGAGAGGTTCGTGCGTTGGCTCTTGAGAAAGGGTTTTGGGGTAATGTGGTTGTTAGGAATGCATTGTTGGATATGTATGTTAAGTGTGGTGAGATGGAGGAAGCACGTTTGTTGTTGAATGGGATGGAAGAGAAGGATGTGGTGACTTGGACAACTTTGATTAATGGATATGTTGTGAATGGTGATGCAAGAAGTGCTCTGATGTTGTGTCGAACAATGCAGTTGGAAGGAGTGAAACCGAATTTGGTTAGTGTAGCTTCTCTGCTATCGGGCTGTGGTGATTTGGTTTCTTTGAAACACGGTAAGTGCCTACATGCATGGGCAATAAGGCAAAACATTGAGTCTGAGGTAGTTGTGGAAACTGCCTTAATTGATATGTATGTCAAATGCAATGATGGCAACCTCAGTTATAAAGTGTTTATGAAAACCTCGAAGAAGAGAACGGCCCCATGGAACGCAGTCCTATCTGGGTTCGTACATAATAGGCTTGCTAGAAATGCAGTACAACTTTTCAAAAAAATGTTAGCAGAAAACGTACGACCCGACAGTCCAACCTTTAATAGTCTTCTTCCTGCATATGCTATTCTTGCTGACCTCAAACAAGCAATGAACATGCATTGTTACCTTGTAAAATTGGGATTTCTTTGCAAACTTGAAGTAGCTAGTATGCTAGTTGATATATACTCAAAGTGTGGAAGTTTAGGATATGCTCACCAGATTTTTGATACGATTCCTCTCAAAGACAAGGATATTATTATTTGGACTGCAATAATTGATGGTTATGGAAAGCATGGATACGGTAAAAGGGCTGTCTCACTTTTCAATCAGATGGTCCAATCTGGAGAAAAACCAAATGAAGTGACTTTCACCTCTGTTCTGCATGCTTGCAGCCATGCAGGTTTGGTTGATGAGGGTTTGTCTCTGTTCAATCTTATGCTTAAAAAATACCAAGTTATTCCTAGTGTTGATCATTATACATGCATAGTGGATCTTCTTGGCCGTGCTGGTCGACTGAATGATGCTTACAATCTTATTAGAACCATGCCTATTACACACAACCATGCCGTATGGGGTGCACTGCTTGGCGCCTGTGTGATACATGAAAATGTTGAACTGGGAGAGATAGCTGCTAGGTGGAGTTTTGAGCTTGAACCAGAAAACACGGGAAATTATGTTCTGTTAGCAAAACTTTATGCTGCTGTAGGAAGGTGGAGAGATGCAGAGAGAGTCAGGAATATGGTAAATGAAGTGGGACTACGAAAAACACCTGCTAACAGCTTAGTTGAGGTTAGCAATATGTGA

Protein sequence

>MS.gene065033.t1

MIRMYVQMGRPNDALNMFVEMFHSGRAMPDHFTYPIVIKACSELLFVDTGVGVHGQTVKCGFDLDSFVQNSLLAMYMNVGEKEAARLVFELMQERTVVSWNTLINGLFRNNCAEEALRVYGRMMDEGVGVDCATVVSVLQACGVLKNVVLGREVRALALEKGFWGNVVVRNALLDMYVKCGEMEEARLLLNGMEEKDVVTWTTLINGYVVNGDARSALMLCRTMQLEGVKPNLVSVASLLSGCGDLVSLKHGKCLHAWAIRQNIESEVVVETALIDMYVKCNDGNLSYKVFMKTSKKRTAPWNAVLSGFVHNRLARNAVQLFKKMLAENVRPDSPTFNSLLPAYAILADLKQAMNMHCYLVKLGFLCKLEVASMLVDIYSKCGSLGYAHQIFDTIPLKDKDIIIWTAIIDGYGKHGYGKRAVSLFNQMVQSGEKPNEVTFTSVLHACSHAGLVDEGLSLFNLMLKKYQVIPSVDHYTCIVDLLGRAGRLNDAYNLIRTMPITHNHAVWGALLGACVIHENVELGEIAARWSFELEPENTGNYVLLAKLYAAVGRWRDAERVRNMVNEVGLRKTPANSLVEVSNM