Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06607.t1 | XP_003602381.2 | 94.9 | 216 | 8 | 1 | 28 | 243 | 141 | 353 | 2.60E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06607.t1 | P19954 | 63.5 | 219 | 75 | 3 | 28 | 243 | 86 | 302 | 9.7e-71 | 268.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06607.t1 | G7J8Z9 | 94.9 | 216 | 8 | 1 | 28 | 243 | 141 | 353 | 1.9e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050076 | MS.gene06607 | 0.83272 | 8.05E-56 | -1.69E-46 |
| MS.gene050404 | MS.gene06607 | 0.846053 | 2.77E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene06607 | 0.825867 | 3.71E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene06607 | 0.814334 | 1.62E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene06607 | 0.824563 | 7.54E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene06607 | 0.845 | 5.34E-59 | -1.69E-46 |
| MS.gene050770 | MS.gene06607 | 0.846264 | 2.42E-59 | -1.69E-46 |
| MS.gene05101 | MS.gene06607 | 0.815801 | 7.68E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene06607 | 0.857933 | 1.16E-62 | -1.69E-46 |
| MS.gene051471 | MS.gene06607 | 0.82917 | 5.98E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene06607 | 0.825571 | 4.36E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene06607 | 0.802354 | 5.84E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene06607 | 0.869199 | 3.70E-66 | -1.69E-46 |
| MS.gene052310 | MS.gene06607 | 0.800399 | 1.47E-48 | -1.69E-46 |
| MS.gene053009 | MS.gene06607 | 0.819534 | 1.10E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene06607 | 0.826964 | 2.03E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene06607 | 0.831251 | 1.86E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene06607 | 0.825201 | 5.33E-54 | -1.69E-46 |
| MS.gene053557 | MS.gene06607 | 0.805204 | 1.49E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene06607 | 0.853544 | 2.23E-61 | -1.69E-46 |
| MS.gene054802 | MS.gene06607 | 0.806329 | 8.67E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene06607 | 0.805584 | 1.24E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene06607 | 0.809742 | 1.63E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene06607 | 0.892033 | 2.30E-74 | -1.69E-46 |
| MS.gene055397 | MS.gene06607 | 0.829179 | 5.95E-55 | -1.69E-46 |
| MS.gene055497 | MS.gene06607 | -0.837413 | 5.28E-57 | -1.69E-46 |
| MS.gene055499 | MS.gene06607 | 0.824263 | 8.87E-54 | -1.69E-46 |
| MS.gene055896 | MS.gene06607 | 0.81418 | 1.76E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene06607 | 0.832174 | 1.10E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene06607 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene06607 | 0.85564 | 5.51E-62 | -1.69E-46 |
| MS.gene057246 | MS.gene06607 | 0.911671 | 4.67E-83 | -1.69E-46 |
| MS.gene057295 | MS.gene06607 | 0.820157 | 7.96E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene06607 | 0.833205 | 6.10E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene06607 | 0.827307 | 1.68E-54 | -1.69E-46 |
| MS.gene059326 | MS.gene06607 | 0.80453 | 2.07E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene06607 | 0.842685 | 2.22E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene06607 | 0.856943 | 2.28E-62 | -1.69E-46 |
| MS.gene061051 | MS.gene06607 | -0.806578 | 7.69E-50 | -1.69E-46 |
| MS.gene061112 | MS.gene06607 | 0.813601 | 2.36E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene06607 | 0.809981 | 1.45E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene06607 | 0.804625 | 1.97E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06607.t1 | MTR_3g092720 | 98.611 | 216 | 0 | 1 | 28 | 243 | 141 | 353 | 5.11e-153 | 429 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06607.t1 | AT5G24490 | 70.046 | 217 | 63 | 2 | 28 | 243 | 93 | 308 | 7.89e-105 | 306 |
Find 77 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCTGCCGCCGCGGCGTT+TGG | 0.274036 | 3.3:+77413690 | None:intergenic |
| ATTGCTTCAAACACGGTTAA+AGG | 0.283097 | 3.3:+77412589 | None:intergenic |
| ATCTGCTTCACCGTTTCCTT+TGG | 0.285013 | 3.3:+77412336 | None:intergenic |
| AAGAAAGCTGAGAAAGATTA+AGG | 0.301741 | 3.3:-77413058 | MS.gene06607:CDS |
| AAACGGTGAAGCAGATAAAT+TGG | 0.329912 | 3.3:-77412329 | MS.gene06607:CDS |
| CGCCGCGGCGGCAGCAGCGG+CGG | 0.337270 | 3.3:-77413685 | MS.gene06607:CDS |
| ACTCGTGGTGGAGGAGAATT+TGG | 0.356620 | 3.3:-77413305 | MS.gene06607:CDS |
| CTTCTTCTTCCTCCTTCTGT+GGG | 0.361357 | 3.3:+77412926 | None:intergenic |
| AAAAGAAAAGAAGGAGGTTA+TGG | 0.362880 | 3.3:-77412370 | MS.gene06607:CDS |
| TTCATCCTCCTCATCCTTTG+TGG | 0.374734 | 3.3:+77412960 | None:intergenic |
| TCTGCTTCACCGTTTCCTTT+GGG | 0.387106 | 3.3:+77412337 | None:intergenic |
| TCCTCATCCTTTGTGGGTAA+TGG | 0.390537 | 3.3:+77412967 | None:intergenic |
| TTAGCCGGTTCAACCACTAT+AGG | 0.402037 | 3.3:+77412304 | None:intergenic |
| GCATGGGGTGGTGCGGGCTG+AGG | 0.403257 | 3.3:-77413133 | MS.gene06607:CDS |
| TACCTATGCGAGTATAGATT+TGG | 0.408357 | 3.3:-77413097 | MS.gene06607:CDS |
| ACCTCGCATCTACGTGTTCT+AGG | 0.409433 | 3.3:+77413275 | None:intergenic |
| AAAGAGGCATGGGGTGGTGC+GGG | 0.416801 | 3.3:-77413139 | MS.gene06607:CDS |
| GCCACATGAAGGGATCTAAT+AGG | 0.418680 | 3.3:-77413014 | MS.gene06607:CDS |
| TCATCCTCCTCATCCTTTGT+GGG | 0.419500 | 3.3:+77412961 | None:intergenic |
| AAACGCCGCGGCGGCAGCAG+CGG | 0.425141 | 3.3:-77413688 | MS.gene06607:CDS |
| TCTCCGTTGTTTGTATGTCA+TGG | 0.434579 | 3.3:-77413657 | MS.gene06607:CDS |
| TCTTCTTCTTCCTCCTTCTG+TGG | 0.462121 | 3.3:+77412925 | None:intergenic |
| TGTAGAGAGGGTTCTTTAGC+CGG | 0.466266 | 3.3:+77412289 | None:intergenic |
| TCCTTTCATTCTTGTAGAGA+GGG | 0.474483 | 3.3:+77412277 | None:intergenic |
| CTTTGTTTACAAAGAGGCAT+GGG | 0.478410 | 3.3:-77413149 | MS.gene06607:CDS |
| ATTGTATACAAAAGAAAAGA+AGG | 0.479149 | 3.3:-77412379 | MS.gene06607:CDS |
| CTCCGTTGTTTGTATGTCAT+GGG | 0.482798 | 3.3:-77413656 | MS.gene06607:CDS |
| GGAGCCTATAGTGGTTGAAC+CGG | 0.496037 | 3.3:-77412308 | MS.gene06607:CDS |
| CAAAGAGGCATGGGGTGGTG+CGG | 0.497915 | 3.3:-77413140 | MS.gene06607:CDS |
| AGCAATTGACCAGTTGGAAA+TGG | 0.498256 | 3.3:-77412572 | MS.gene06607:CDS |
| CTCATTATTCCCAAAGGAAA+CGG | 0.502483 | 3.3:-77412346 | MS.gene06607:CDS |
| GGAAGAAGAAGAACTTATTG+AGG | 0.514048 | 3.3:-77412914 | MS.gene06607:CDS |
| AGATAAATTGGAGCCTATAG+TGG | 0.523119 | 3.3:-77412317 | MS.gene06607:CDS |
| CATGAGCAACCATTTCCAAC+TGG | 0.524804 | 3.3:+77412563 | None:intergenic |
| ACTTTGTTTACAAAGAGGCA+TGG | 0.529041 | 3.3:-77413150 | MS.gene06607:CDS |
| AGAAGAAGAACTTATTGAGG+AGG | 0.531385 | 3.3:-77412911 | MS.gene06607:intron |
| GTTTGAAGCAATTGACCAGT+TGG | 0.532744 | 3.3:-77412578 | MS.gene06607:CDS |
| GCCATTACCCACAAAGGATG+AGG | 0.535853 | 3.3:-77412968 | MS.gene06607:CDS |
| TTCCTTTCATTCTTGTAGAG+AGG | 0.539789 | 3.3:+77412276 | None:intergenic |
| TGATCATGGTCGCCACATGA+AGG | 0.549029 | 3.3:-77413025 | MS.gene06607:CDS |
| AACCGCCGCTGCTGCCGCCG+CGG | 0.549932 | 3.3:+77413683 | None:intergenic |
| GTTGTTTGTATGTCATGGGA+CGG | 0.558277 | 3.3:-77413652 | MS.gene06607:intron |
| GCGTTTGGTTGTTGTTGTTG+TGG | 0.561693 | 3.3:+77413705 | None:intergenic |
| GATCATGGTCGCCACATGAA+GGG | 0.566295 | 3.3:-77413024 | MS.gene06607:CDS |
| TGAAATCTCCCCACAGAAGG+AGG | 0.570050 | 3.3:-77412935 | MS.gene06607:CDS |
| CAGCTTTCTTTGAATGACCG+AGG | 0.571209 | 3.3:+77413071 | None:intergenic |
| ACAGCACGTAGAGGAGAAAG+TGG | 0.574125 | 3.3:-77413384 | MS.gene06607:CDS |
| AGACTATCTACTCGTGGTGG+AGG | 0.576666 | 3.3:-77413314 | MS.gene06607:CDS |
| AGGTTACTTTGTTTACAAAG+AGG | 0.577297 | 3.3:-77413155 | MS.gene06607:CDS |
| AACTGAAATCTCCCCACAGA+AGG | 0.585420 | 3.3:-77412938 | MS.gene06607:CDS |
| CTGGTCAATTGCTTCAAACA+CGG | 0.587799 | 3.3:+77412582 | None:intergenic |
| TTCTTCTTCCTCCTTCTGTG+GGG | 0.588690 | 3.3:+77412927 | None:intergenic |
| GGTGCGGGCTGAGGAACATG+CGG | 0.592841 | 3.3:-77413124 | MS.gene06607:CDS |
| CAGCACGTAGAGGAGAAAGT+GGG | 0.593436 | 3.3:-77413383 | MS.gene06607:CDS |
| GAGTATAGATTTGGTGTCCT+CGG | 0.603285 | 3.3:-77413088 | MS.gene06607:CDS |
| TATGGACTCATTATTCCCAA+AGG | 0.604836 | 3.3:-77412352 | MS.gene06607:CDS |
| GGTGGAGGAGAATTTGGTCG+AGG | 0.611696 | 3.3:-77413299 | MS.gene06607:CDS |
| TAGGTTGAAATTTAGAGAGG+CGG | 0.613252 | 3.3:-77412995 | MS.gene06607:CDS |
| GCTTCAAACACGGTTAAAGG+AGG | 0.615142 | 3.3:+77412592 | None:intergenic |
| CACCAAATCTATACTCGCAT+AGG | 0.617087 | 3.3:+77413095 | None:intergenic |
| GTTTACAAAGAGGCATGGGG+TGG | 0.620636 | 3.3:-77413145 | MS.gene06607:CDS |
| TTTGGTTGTTGTTGTTGTGG+CGG | 0.626673 | 3.3:+77413708 | None:intergenic |
| ACCTATTAGATCCCTTCATG+TGG | 0.628686 | 3.3:+77413013 | None:intergenic |
| TAATAGGTTGAAATTTAGAG+AGG | 0.630490 | 3.3:-77412998 | MS.gene06607:CDS |
| ACCTAGAACACGTAGATGCG+AGG | 0.650273 | 3.3:-77413276 | MS.gene06607:intron |
| AGCACGTAGAGGAGAAAGTG+GGG | 0.652859 | 3.3:-77413382 | MS.gene06607:CDS |
| GGTATTGCCATTACCCACAA+AGG | 0.654530 | 3.3:-77412974 | MS.gene06607:CDS |
| ATTACCCACAAAGGATGAGG+AGG | 0.656628 | 3.3:-77412965 | MS.gene06607:CDS |
| TTTGTTTACAAAGAGGCATG+GGG | 0.659293 | 3.3:-77413148 | MS.gene06607:CDS |
| ACAACAACCAAACGCCGCGG+CGG | 0.660743 | 3.3:-77413697 | MS.gene06607:CDS |
| TGCGGTGAAACAGCACGTAG+AGG | 0.663832 | 3.3:-77413393 | MS.gene06607:CDS |
| GTATACAAAAGAAAAGAAGG+AGG | 0.667757 | 3.3:-77412376 | MS.gene06607:CDS |
| ACAACAACAACCAAACGCCG+CGG | 0.673009 | 3.3:-77413700 | MS.gene06607:CDS |
| GTCCCATGACATACAAACAA+CGG | 0.689809 | 3.3:+77413654 | None:intergenic |
| GATGTGAGACTATCTACTCG+TGG | 0.713178 | 3.3:-77413320 | MS.gene06607:CDS |
| TTGAGTTCAGCTGAATGATG+CGG | 0.727884 | 3.3:-77413411 | MS.gene06607:intron |
| GTGAGACTATCTACTCGTGG+TGG | 0.731336 | 3.3:-77413317 | MS.gene06607:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAATGATGATAATAAAA+TGG | + | chr3.3:77412431-77412450 | None:intergenic | 15.0% |
| !! | ATTAGAAAAACTTCAATTTC+TGG | - | chr3.3:77413203-77413222 | MS.gene06607:intron | 20.0% |
| !! | ATTGTATACAAAAGAAAAGA+AGG | - | chr3.3:77413614-77413633 | MS.gene06607:intron | 20.0% |
| !! | TGATGATAATAAAATGGAAA+TGG | + | chr3.3:77412425-77412444 | None:intergenic | 20.0% |
| ! | ATGATTAATATCAACAACGA+AGG | + | chr3.3:77413114-77413133 | None:intergenic | 25.0% |
| !! | CTCAATTTTATGCTATCTTA+GGG | - | chr3.3:77413552-77413571 | MS.gene06607:intron | 25.0% |
| !! | TAATAGGTTGAAATTTAGAG+AGG | - | chr3.3:77412995-77413014 | MS.gene06607:CDS | 25.0% |
| !! | TCAATTTTATGCTATCTTAG+GGG | - | chr3.3:77413553-77413572 | MS.gene06607:intron | 25.0% |
| !! | TGATTTCTATGATTTGCATT+AGG | - | chr3.3:77412818-77412837 | MS.gene06607:intron | 25.0% |
| !!! | AAAAACTTCAATTTCTGGTT+TGG | - | chr3.3:77413208-77413227 | MS.gene06607:intron | 25.0% |
| !!! | GTTATATTTCTAGAATGACA+CGG | + | chr3.3:77413163-77413182 | None:intergenic | 25.0% |
| AAAAGAAAAGAAGGAGGTTA+TGG | - | chr3.3:77413623-77413642 | MS.gene06607:intron | 30.0% | |
| AAGAAAGCTGAGAAAGATTA+AGG | - | chr3.3:77412935-77412954 | MS.gene06607:CDS | 30.0% | |
| AAGGAAAAAGAAACTGATCA+TGG | - | chr3.3:77412954-77412973 | MS.gene06607:CDS | 30.0% | |
| AGAACAAGTGTAATTAGCAA+CGG | - | chr3.3:77412524-77412543 | MS.gene06607:intron | 30.0% | |
| ATACAATGTAGTGAGAAACA+TGG | + | chr3.3:77413524-77413543 | None:intergenic | 30.0% | |
| GTAGCTAGAAATATCATATC+AGG | - | chr3.3:77413137-77413156 | MS.gene06607:CDS | 30.0% | |
| GTATACAAAAGAAAAGAAGG+AGG | - | chr3.3:77413617-77413636 | MS.gene06607:intron | 30.0% | |
| TATAACTAATCTACTAGCTG+TGG | - | chr3.3:77412559-77412578 | MS.gene06607:CDS | 30.0% | |
| ! | AGGTTACTTTGTTTACAAAG+AGG | - | chr3.3:77412838-77412857 | MS.gene06607:intron | 30.0% |
| ! | GCTCAATTTTATGCTATCTT+AGG | - | chr3.3:77413551-77413570 | MS.gene06607:intron | 30.0% |
| !!! | ACTACTGTTTTAGCTATCTT+TGG | - | chr3.3:77413493-77413512 | MS.gene06607:intron | 30.0% |
| AAACGGTGAAGCAGATAAAT+TGG | - | chr3.3:77413664-77413683 | MS.gene06607:CDS | 35.0% | |
| AGAAGAAGAACTTATTGAGG+AGG | - | chr3.3:77413082-77413101 | MS.gene06607:CDS | 35.0% | |
| AGATAAATTGGAGCCTATAG+TGG | - | chr3.3:77413676-77413695 | MS.gene06607:CDS | 35.0% | |
| ATTGCTTCAAACACGGTTAA+AGG | + | chr3.3:77413407-77413426 | None:intergenic | 35.0% | |
| CTCATTATTCCCAAAGGAAA+CGG | - | chr3.3:77413647-77413666 | MS.gene06607:intron | 35.0% | |
| GGAAGAAGAAGAACTTATTG+AGG | - | chr3.3:77413079-77413098 | MS.gene06607:CDS | 35.0% | |
| TACCTATGCGAGTATAGATT+TGG | - | chr3.3:77412896-77412915 | MS.gene06607:intron | 35.0% | |
| TATGGACTCATTATTCCCAA+AGG | - | chr3.3:77413641-77413660 | MS.gene06607:intron | 35.0% | |
| TCCGTCAAATTAATCATCCA+GGG | - | chr3.3:77412374-77412393 | MS.gene06607:CDS | 35.0% | |
| TTCCGTCAAATTAATCATCC+AGG | - | chr3.3:77412373-77412392 | MS.gene06607:CDS | 35.0% | |
| ! | AAGTGTACTTCCTTTGTTTC+AGG | - | chr3.3:77413581-77413600 | MS.gene06607:intron | 35.0% |
| ! | ACCCTGGATGATTAATTTGA+CGG | + | chr3.3:77412378-77412397 | None:intergenic | 35.0% |
| ! | ACTTTGTTTACAAAGAGGCA+TGG | - | chr3.3:77412843-77412862 | MS.gene06607:intron | 35.0% |
| ! | AGTGTACTTCCTTTGTTTCA+GGG | - | chr3.3:77413582-77413601 | MS.gene06607:intron | 35.0% |
| ! | ATTAATTTGACGGAAGAGAG+TGG | + | chr3.3:77412368-77412387 | None:intergenic | 35.0% |
| ! | CTTTGTTTACAAAGAGGCAT+GGG | - | chr3.3:77412844-77412863 | MS.gene06607:intron | 35.0% |
| ! | GCTTTTCGAAATGAAGAATC+TGG | - | chr3.3:77413461-77413480 | MS.gene06607:intron | 35.0% |
| ! | TAGGTTGAAATTTAGAGAGG+CGG | - | chr3.3:77412998-77413017 | MS.gene06607:CDS | 35.0% |
| ! | TTTGTTTACAAAGAGGCATG+GGG | - | chr3.3:77412845-77412864 | MS.gene06607:intron | 35.0% |
| !! | ATACCTGCATATTTTTACCC+TGG | + | chr3.3:77412394-77412413 | None:intergenic | 35.0% |
| !! | TTTGCTTTTGTTGCAAACCT+AGG | - | chr3.3:77412767-77412786 | MS.gene06607:intron | 35.0% |
| ACCTATTAGATCCCTTCATG+TGG | + | chr3.3:77412983-77413002 | None:intergenic | 40.0% | |
| ACTGGAGTTAGTGCAATGTA+AGG | + | chr3.3:77413336-77413355 | None:intergenic | 40.0% | |
| AGCAATTGACCAGTTGGAAA+TGG | - | chr3.3:77413421-77413440 | MS.gene06607:intron | 40.0% | |
| ATTAACCTCCCCTGAAACAA+AGG | + | chr3.3:77413594-77413613 | None:intergenic | 40.0% | |
| CACCAAATCTATACTCGCAT+AGG | + | chr3.3:77412901-77412920 | None:intergenic | 40.0% | |
| CATCCAGGGTAAAAATATGC+AGG | - | chr3.3:77412388-77412407 | MS.gene06607:CDS | 40.0% | |
| CTCCGTTGTTTGTATGTCAT+GGG | - | chr3.3:77412337-77412356 | MS.gene06607:CDS | 40.0% | |
| CTGGTCAATTGCTTCAAACA+CGG | + | chr3.3:77413414-77413433 | None:intergenic | 40.0% | |
| GAAGAACTTATTGAGGAGGT+TGG | - | chr3.3:77413086-77413105 | MS.gene06607:CDS | 40.0% | |
| GTCCCATGACATACAAACAA+CGG | + | chr3.3:77412342-77412361 | None:intergenic | 40.0% | |
| GTTGTTTGTATGTCATGGGA+CGG | - | chr3.3:77412341-77412360 | MS.gene06607:CDS | 40.0% | |
| TCTCCGTTGTTTGTATGTCA+TGG | - | chr3.3:77412336-77412355 | MS.gene06607:CDS | 40.0% | |
| TTGAGTTCAGCTGAATGATG+CGG | - | chr3.3:77412582-77412601 | MS.gene06607:CDS | 40.0% | |
| ! | CTTTTGTTGCAAACCTAGGA+TGG | - | chr3.3:77412771-77412790 | MS.gene06607:intron | 40.0% |
| ! | GTGTACTTCCTTTGTTTCAG+GGG | - | chr3.3:77413583-77413602 | MS.gene06607:intron | 40.0% |
| ! | GTTTGAAGCAATTGACCAGT+TGG | - | chr3.3:77413415-77413434 | MS.gene06607:intron | 40.0% |
| ! | TTTGGTTGTTGTTGTTGTGG+CGG | + | chr3.3:77412288-77412307 | None:intergenic | 40.0% |
| !! | AGGCTGTTTTACAGGTTGTT+CGG | - | chr3.3:77413360-77413379 | MS.gene06607:CDS | 40.0% |
| !! | GAGTATAGATTTGGTGTCCT+CGG | - | chr3.3:77412905-77412924 | MS.gene06607:intron | 40.0% |
| AACTGAAATCTCCCCACAGA+AGG | - | chr3.3:77413055-77413074 | MS.gene06607:CDS | 45.0% | |
| ATCTGCTTCACCGTTTCCTT+TGG | + | chr3.3:77413660-77413679 | None:intergenic | 45.0% | |
| ATTACCCACAAAGGATGAGG+AGG | - | chr3.3:77413028-77413047 | MS.gene06607:CDS | 45.0% | |
| CAGCTTTCTTTGAATGACCG+AGG | + | chr3.3:77412925-77412944 | None:intergenic | 45.0% | |
| CATGAGCAACCATTTCCAAC+TGG | + | chr3.3:77413433-77413452 | None:intergenic | 45.0% | |
| CTTCTTCTTCCTCCTTCTGT+GGG | + | chr3.3:77413070-77413089 | None:intergenic | 45.0% | |
| GATGTGAGACTATCTACTCG+TGG | - | chr3.3:77412673-77412692 | MS.gene06607:intron | 45.0% | |
| GCCACATGAAGGGATCTAAT+AGG | - | chr3.3:77412979-77412998 | MS.gene06607:CDS | 45.0% | |
| GCTTCAAACACGGTTAAAGG+AGG | + | chr3.3:77413404-77413423 | None:intergenic | 45.0% | |
| GGTATTGCCATTACCCACAA+AGG | - | chr3.3:77413019-77413038 | MS.gene06607:CDS | 45.0% | |
| TCATCCTCCTCATCCTTTGT+GGG | + | chr3.3:77413035-77413054 | None:intergenic | 45.0% | |
| TCCTCATCCTTTGTGGGTAA+TGG | + | chr3.3:77413029-77413048 | None:intergenic | 45.0% | |
| TCTGCTTCACCGTTTCCTTT+GGG | + | chr3.3:77413659-77413678 | None:intergenic | 45.0% | |
| TCTTCTTCTTCCTCCTTCTG+TGG | + | chr3.3:77413071-77413090 | None:intergenic | 45.0% | |
| TGTAGAGAGGGTTCTTTAGC+CGG | + | chr3.3:77413707-77413726 | None:intergenic | 45.0% | |
| TTCATCCTCCTCATCCTTTG+TGG | + | chr3.3:77413036-77413055 | None:intergenic | 45.0% | |
| TTCTTCTTCCTCCTTCTGTG+GGG | + | chr3.3:77413069-77413088 | None:intergenic | 45.0% | |
| ! | GCAAACCTAGGATGGATTCA+GGG | - | chr3.3:77412779-77412798 | MS.gene06607:intron | 45.0% |
| ! | GCGTTTGGTTGTTGTTGTTG+TGG | + | chr3.3:77412291-77412310 | None:intergenic | 45.0% |
| ! | TACTTCCTTTGTTTCAGGGG+AGG | - | chr3.3:77413586-77413605 | MS.gene06607:intron | 45.0% |
| ! | TGCAAACCTAGGATGGATTC+AGG | - | chr3.3:77412778-77412797 | MS.gene06607:intron | 45.0% |
| ! | TTAGCCGGTTCAACCACTAT+AGG | + | chr3.3:77413692-77413711 | None:intergenic | 45.0% |
| ACAACAACAACCAAACGCCG+CGG | - | chr3.3:77412293-77412312 | MS.gene06607:CDS | 50.0% | |
| ACAGCACGTAGAGGAGAAAG+TGG | - | chr3.3:77412609-77412628 | MS.gene06607:CDS | 50.0% | |
| ACCTAGAACACGTAGATGCG+AGG | - | chr3.3:77412717-77412736 | MS.gene06607:intron | 50.0% | |
| ACCTCGCATCTACGTGTTCT+AGG | + | chr3.3:77412721-77412740 | None:intergenic | 50.0% | |
| AGACTATCTACTCGTGGTGG+AGG | - | chr3.3:77412679-77412698 | MS.gene06607:intron | 50.0% | |
| AGCACGTAGAGGAGAAAGTG+GGG | - | chr3.3:77412611-77412630 | MS.gene06607:CDS | 50.0% | |
| CAAGACCCTGAATCCATCCT+AGG | + | chr3.3:77412787-77412806 | None:intergenic | 50.0% | |
| CAGCACGTAGAGGAGAAAGT+GGG | - | chr3.3:77412610-77412629 | MS.gene06607:CDS | 50.0% | |
| CTGTAAAACAGCCTCGCAAC+TGG | + | chr3.3:77413354-77413373 | None:intergenic | 50.0% | |
| GATCATGGTCGCCACATGAA+GGG | - | chr3.3:77412969-77412988 | MS.gene06607:CDS | 50.0% | |
| GCCATTACCCACAAAGGATG+AGG | - | chr3.3:77413025-77413044 | MS.gene06607:CDS | 50.0% | |
| GGAGCCTATAGTGGTTGAAC+CGG | - | chr3.3:77413685-77413704 | MS.gene06607:CDS | 50.0% | |
| GTGAGACTATCTACTCGTGG+TGG | - | chr3.3:77412676-77412695 | MS.gene06607:intron | 50.0% | |
| TGAAATCTCCCCACAGAAGG+AGG | - | chr3.3:77413058-77413077 | MS.gene06607:CDS | 50.0% | |
| TGATCATGGTCGCCACATGA+AGG | - | chr3.3:77412968-77412987 | MS.gene06607:CDS | 50.0% | |
| TTGCACTAACTCCAGTTGCG+AGG | - | chr3.3:77413340-77413359 | MS.gene06607:CDS | 50.0% | |
| ! | ACTCGTGGTGGAGGAGAATT+TGG | - | chr3.3:77412688-77412707 | MS.gene06607:intron | 50.0% |
| ! | GTTTACAAAGAGGCATGGGG+TGG | - | chr3.3:77412848-77412867 | MS.gene06607:intron | 50.0% |
| !! | CAGTTGCGAGGCTGTTTTAC+AGG | - | chr3.3:77413352-77413371 | MS.gene06607:CDS | 50.0% |
| GGTGGAGGAGAATTTGGTCG+AGG | - | chr3.3:77412694-77412713 | MS.gene06607:intron | 55.0% | |
| TGCGGTGAAACAGCACGTAG+AGG | - | chr3.3:77412600-77412619 | MS.gene06607:CDS | 55.0% | |
| ACAACAACCAAACGCCGCGG+CGG | - | chr3.3:77412296-77412315 | MS.gene06607:CDS | 60.0% | |
| ! | AAAGAGGCATGGGGTGGTGC+GGG | - | chr3.3:77412854-77412873 | MS.gene06607:intron | 60.0% |
| ! | CAAAGAGGCATGGGGTGGTG+CGG | - | chr3.3:77412853-77412872 | MS.gene06607:intron | 60.0% |
| ! | GGTGCGGGCTGAGGAACATG+CGG | - | chr3.3:77412869-77412888 | MS.gene06607:intron | 65.0% |
| AAACGCCGCGGCGGCAGCAG+CGG | - | chr3.3:77412305-77412324 | MS.gene06607:CDS | 75.0% | |
| ! | GCATGGGGTGGTGCGGGCTG+AGG | - | chr3.3:77412860-77412879 | MS.gene06607:intron | 75.0% |
| ! | AACCGCCGCTGCTGCCGCCG+CGG | + | chr3.3:77412313-77412332 | None:intergenic | 80.0% |
| ! | GCTGCTGCCGCCGCGGCGTT+TGG | + | chr3.3:77412306-77412325 | None:intergenic | 80.0% |
| ! | CGCCGCGGCGGCAGCAGCGG+CGG | - | chr3.3:77412308-77412327 | MS.gene06607:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77412282 | 77413733 | 77412282 | ID=MS.gene06607 |
| chr3.3 | mRNA | 77412282 | 77413733 | 77412282 | ID=MS.gene06607.t1;Parent=MS.gene06607 |
| chr3.3 | exon | 77413653 | 77413733 | 77413653 | ID=MS.gene06607.t1.exon1;Parent=MS.gene06607.t1 |
| chr3.3 | CDS | 77413653 | 77413733 | 77413653 | ID=cds.MS.gene06607.t1;Parent=MS.gene06607.t1 |
| chr3.3 | exon | 77413277 | 77413423 | 77413277 | ID=MS.gene06607.t1.exon2;Parent=MS.gene06607.t1 |
| chr3.3 | CDS | 77413277 | 77413423 | 77413277 | ID=cds.MS.gene06607.t1;Parent=MS.gene06607.t1 |
| chr3.3 | exon | 77412912 | 77413175 | 77412912 | ID=MS.gene06607.t1.exon3;Parent=MS.gene06607.t1 |
| chr3.3 | CDS | 77412912 | 77413175 | 77412912 | ID=cds.MS.gene06607.t1;Parent=MS.gene06607.t1 |
| chr3.3 | exon | 77412533 | 77412641 | 77412533 | ID=MS.gene06607.t1.exon4;Parent=MS.gene06607.t1 |
| chr3.3 | CDS | 77412533 | 77412641 | 77412533 | ID=cds.MS.gene06607.t1;Parent=MS.gene06607.t1 |
| chr3.3 | exon | 77412282 | 77412412 | 77412282 | ID=MS.gene06607.t1.exon5;Parent=MS.gene06607.t1 |
| chr3.3 | CDS | 77412282 | 77412412 | 77412282 | ID=cds.MS.gene06607.t1;Parent=MS.gene06607.t1 |
| Gene Sequence |
| Protein sequence |
