AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068190.t1 MTR_1g050448 98.133 375 7 0 1 375 1 375 0.0 772
MS.gene068190.t1 MTR_1g112210 74.792 361 86 3 19 375 23 382 0.0 578
MS.gene068190.t1 MTR_1g112210 72.576 361 81 4 19 375 23 369 0.0 550
MS.gene068190.t1 MTR_5g071350 39.316 351 190 5 45 375 52 399 3.06e-96 292
MS.gene068190.t1 MTR_2g015720 41.979 374 189 9 9 375 6 358 5.45e-95 288
MS.gene068190.t1 MTR_7g093450 41.449 345 185 6 48 375 243 587 8.79e-94 292
MS.gene068190.t1 MTR_2g091175 42.560 336 173 7 47 375 44 366 5.82e-93 283
MS.gene068190.t1 MTR_0136s0010 40.870 345 187 6 48 375 165 509 1.52e-91 284
MS.gene068190.t1 MTR_2g073510 41.791 335 177 5 49 375 29 353 3.31e-91 278
MS.gene068190.t1 MTR_3g049330 39.840 374 191 9 10 375 3 350 5.95e-91 277
MS.gene068190.t1 MTR_2g073500 43.413 334 161 9 53 375 29 345 2.29e-90 276
MS.gene068190.t1 MTR_3g464570 38.988 336 190 5 53 375 43 376 4.61e-88 271
MS.gene068190.t1 MTR_4g079700 38.667 375 197 10 14 375 9 363 7.96e-87 267
MS.gene068190.t1 MTR_4g088030 39.521 334 185 5 48 375 28 350 1.24e-86 266
MS.gene068190.t1 MTR_4g016940 39.826 344 188 8 51 375 84 427 2.00e-86 268
MS.gene068190.t1 MTR_5g034810 39.718 355 189 9 31 375 13 352 4.02e-86 265
MS.gene068190.t1 MTR_4g126950 34.908 381 221 6 21 375 67 446 1.01e-85 267
MS.gene068190.t1 MTR_5g059400 35.938 384 220 8 17 375 133 515 2.26e-85 268
MS.gene068190.t1 MTR_1g116130 35.938 384 220 8 17 375 133 515 2.26e-85 268
MS.gene068190.t1 MTR_5g033800 38.123 341 195 5 51 375 143 483 1.26e-84 265
MS.gene068190.t1 MTR_4g087730 40.000 335 184 5 47 375 39 362 7.07e-84 259
MS.gene068190.t1 MTR_7g109550 37.425 334 187 6 53 371 137 463 1.20e-83 262
MS.gene068190.t1 MTR_3g021090 40.176 341 178 7 40 371 21 344 2.26e-83 260
MS.gene068190.t1 MTR_3g035830 39.942 343 180 7 40 373 21 346 4.06e-82 254
MS.gene068190.t1 MTR_8g463790 40.816 343 179 9 53 375 71 409 8.23e-82 256
MS.gene068190.t1 MTR_4g121560 37.135 342 194 6 53 375 114 453 8.12e-81 255
MS.gene068190.t1 MTR_3g021060 38.554 332 185 5 49 373 42 361 8.41e-81 251
MS.gene068190.t1 MTR_4g014440 37.037 351 198 9 48 375 57 407 5.00e-80 251
MS.gene068190.t1 MTR_1g058380 36.476 403 219 11 1 375 1 394 1.71e-79 250
MS.gene068190.t1 MTR_1g111010 39.881 336 169 11 50 375 29 341 6.33e-79 246
MS.gene068190.t1 MTR_8g069790 37.647 340 196 5 52 375 177 516 2.06e-78 250
MS.gene068190.t1 MTR_3g070900 37.647 340 191 7 53 371 106 445 6.12e-77 244
MS.gene068190.t1 MTR_7g070060 34.336 399 226 11 10 375 14 409 1.02e-76 243
MS.gene068190.t1 MTR_7g068920 38.841 345 192 7 50 375 77 421 4.82e-76 241
MS.gene068190.t1 MTR_5g082880 37.681 345 191 8 51 371 163 507 5.26e-74 239
MS.gene068190.t1 MTR_3g071650 35.673 342 201 7 53 375 89 430 1.89e-72 232
MS.gene068190.t1 MTR_5g083260 33.417 398 235 10 8 375 27 424 2.94e-72 231
MS.gene068190.t1 MTR_7g094750 35.311 354 206 6 43 375 81 432 4.43e-71 229
MS.gene068190.t1 MTR_2g022560 35.511 352 197 8 48 375 92 437 5.96e-71 229
MS.gene068190.t1 MTR_4g014430 35.244 349 206 8 45 375 100 446 1.48e-70 228
MS.gene068190.t1 MTR_3g464570 38.235 272 154 4 116 375 3 272 1.29e-64 207
MS.gene068190.t1 MTR_3g090120 35.072 345 196 7 49 375 125 459 3.84e-63 209
MS.gene068190.t1 MTR_8g093530 32.853 347 207 7 44 375 81 416 1.61e-62 206
MS.gene068190.t1 MTR_5g033800 38.235 238 136 3 51 277 143 380 5.89e-58 193
MS.gene068190.t1 MTR_7g070060 35.943 281 158 7 16 277 20 297 8.96e-56 185
MS.gene068190.t1 MTR_7g070060 33.106 293 175 7 104 375 15 307 1.14e-52 177
MS.gene068190.t1 MTR_7g094750 34.677 248 149 3 43 277 81 328 6.72e-51 173
MS.gene068190.t1 MTR_8g027900 27.543 403 252 13 3 375 163 555 3.24e-41 152
MS.gene068190.t1 MTR_6g061710 30.851 376 205 16 40 375 154 514 7.70e-40 148
MS.gene068190.t1 MTR_1g076690 30.585 376 211 15 36 375 209 570 2.42e-39 147
MS.gene068190.t1 MTR_5g035080 28.451 355 213 10 53 375 75 420 1.49e-38 143
MS.gene068190.t1 MTR_8g093870 30.027 373 217 14 35 375 112 472 1.68e-38 144
MS.gene068190.t1 MTR_7g019120 29.722 360 206 14 49 375 75 420 6.31e-38 141
MS.gene068190.t1 MTR_7g033230 28.205 351 223 9 51 375 262 609 2.01e-37 142
MS.gene068190.t1 MTR_8g104970 28.226 372 224 12 39 375 102 465 6.29e-37 139
MS.gene068190.t1 MTR_7g033230 28.205 351 223 9 51 375 332 679 7.39e-37 141
MS.gene068190.t1 MTR_4g092830 28.329 353 215 13 53 375 48 392 7.72e-37 138
MS.gene068190.t1 MTR_5g069320 28.082 292 141 6 96 368 145 386 1.07e-36 137
MS.gene068190.t1 MTR_3g109840 27.557 352 217 7 53 375 73 415 8.58e-36 135
MS.gene068190.t1 MTR_4g125060 30.641 359 210 16 45 375 124 471 1.06e-35 136
MS.gene068190.t1 MTR_4g125060 30.641 359 210 16 45 375 163 510 1.07e-35 136
MS.gene068190.t1 MTR_5g035090 29.428 367 211 15 44 375 74 427 1.37e-35 135
MS.gene068190.t1 MTR_4g125060 30.641 359 210 16 45 375 192 539 2.23e-35 136
MS.gene068190.t1 MTR_8g099300 26.316 361 219 13 50 375 71 419 1.30e-34 132
MS.gene068190.t1 MTR_5g035150 28.852 357 220 12 48 375 80 431 2.68e-33 129
MS.gene068190.t1 MTR_6g016880 26.877 413 248 13 4 375 20 419 4.73e-33 128
MS.gene068190.t1 MTR_6g016875 28.969 359 221 11 45 375 56 408 1.03e-32 127
MS.gene068190.t1 MTR_2g016060 29.006 362 194 14 57 375 59 400 1.98e-32 126
MS.gene068190.t1 MTR_5g035070 30.435 368 208 15 44 375 78 433 5.29e-31 122
MS.gene068190.t1 MTR_6g016240 27.764 407 240 17 4 371 21 412 6.33e-31 122
MS.gene068190.t1 MTR_6g007777 28.610 367 203 17 48 375 111 457 3.99e-29 117
MS.gene068190.t1 MTR_7g019140 45.833 96 51 1 49 143 75 170 1.95e-23 95.9
MS.gene068190.t1 MTR_5g035120 34.286 140 87 2 8 142 26 165 8.48e-21 89.0
MS.gene068190.t1 MTR_3g021150 37.273 110 59 2 238 339 1 108 3.28e-17 77.4
MS.gene068190.t1 MTR_2g022580 32.773 119 68 2 112 218 2 120 2.83e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068190.t1 AT3G54260 62.632 380 131 6 1 375 1 374 2.91e-171 483
MS.gene068190.t1 AT2G31110 39.623 371 205 6 13 375 3 362 1.29e-92 282
MS.gene068190.t1 AT5G58600 40.290 345 189 7 44 375 60 400 4.57e-91 279
MS.gene068190.t1 AT5G06700 40.870 345 187 6 48 375 250 594 4.71e-91 285
MS.gene068190.t1 AT1G29050 39.714 350 185 5 41 375 40 378 1.36e-89 275
MS.gene068190.t1 AT2G30900 41.964 336 173 9 51 375 41 365 2.41e-88 271
MS.gene068190.t1 AT2G34070 38.576 337 189 5 46 375 58 383 1.68e-87 270
MS.gene068190.t1 AT2G42570 39.940 333 183 5 49 375 43 364 2.20e-87 269
MS.gene068190.t1 AT3G12060 39.710 345 191 5 48 375 191 535 5.56e-87 273
MS.gene068190.t1 AT5G20590 38.841 345 193 6 48 375 136 479 3.17e-86 270
MS.gene068190.t1 AT5G01360 38.728 346 190 8 51 375 34 378 1.02e-85 265
MS.gene068190.t1 AT5G01360 38.728 346 190 8 51 375 90 434 4.12e-85 265
MS.gene068190.t1 AT5G49340 38.398 362 202 8 35 375 80 441 4.07e-84 263
MS.gene068190.t1 AT3G62390 36.267 375 204 8 23 371 102 467 1.87e-83 262
MS.gene068190.t1 AT2G30010 37.838 370 197 8 35 375 31 396 3.35e-82 256
MS.gene068190.t1 AT1G73140 40.058 342 183 9 53 375 67 405 3.43e-82 257
MS.gene068190.t1 AT2G30010 37.838 370 197 8 35 375 74 439 9.56e-82 256
MS.gene068190.t1 AT2G40160 38.617 347 189 9 53 375 77 423 6.48e-81 254
MS.gene068190.t1 AT2G40160 38.329 347 190 9 53 375 77 423 1.65e-80 253
MS.gene068190.t1 AT1G60790 36.364 352 200 9 46 375 183 532 7.71e-80 254
MS.gene068190.t1 AT1G78710 34.897 341 203 7 43 375 28 357 3.82e-79 247
MS.gene068190.t1 AT3G14850 38.369 331 188 6 48 371 29 350 1.71e-78 245
MS.gene068190.t1 AT3G55990 37.719 342 192 7 51 371 138 479 5.19e-78 248
MS.gene068190.t1 AT2G40150 37.176 347 191 7 52 371 70 416 2.12e-77 245
MS.gene068190.t1 AT5G19160 36.559 372 200 9 32 375 81 444 5.32e-74 237
MS.gene068190.t1 AT2G38320 32.873 362 220 9 37 375 43 404 1.00e-73 235
MS.gene068190.t1 AT3G11570 35.859 396 213 12 8 375 37 419 1.21e-73 235
MS.gene068190.t1 AT5G01620 35.278 360 211 9 35 375 93 449 2.72e-73 235
MS.gene068190.t1 AT5G01620 35.278 360 211 9 35 375 93 449 2.72e-73 235
MS.gene068190.t1 AT5G01620 35.278 360 211 9 35 375 101 457 3.28e-73 235
MS.gene068190.t1 AT2G40320 34.568 405 219 13 8 375 27 422 3.69e-71 229
MS.gene068190.t1 AT3G11030 35.838 346 196 8 53 375 106 448 1.74e-70 228
MS.gene068190.t1 AT5G06230 38.095 357 180 10 50 375 18 364 2.31e-70 225
MS.gene068190.t1 AT5G06230 38.095 357 180 10 50 375 59 405 5.15e-70 225
MS.gene068190.t1 AT3G06080 36.467 351 197 7 48 375 98 445 5.32e-70 227
MS.gene068190.t1 AT2G31110 40.230 261 151 4 13 270 3 261 1.07e-67 215
MS.gene068190.t1 AT1G48880 35.588 340 187 9 53 375 115 439 1.84e-67 220
MS.gene068190.t1 AT2G30900 43.043 230 126 5 51 277 41 268 1.42e-64 207
MS.gene068190.t1 AT2G38320 32.710 321 195 7 76 375 1 321 1.84e-64 208
MS.gene068190.t1 AT5G58600 41.102 236 133 4 44 277 60 291 1.28e-63 205
MS.gene068190.t1 AT3G62390 36.765 272 155 4 23 277 102 373 8.76e-62 204
MS.gene068190.t1 AT2G40160 41.102 236 128 6 53 277 77 312 2.87e-60 197
MS.gene068190.t1 AT2G34070 37.308 260 146 4 122 375 1 249 1.12e-59 194
MS.gene068190.t1 AT5G20590 38.683 243 136 4 48 277 136 378 2.01e-56 189
MS.gene068190.t1 AT5G19160 37.066 259 147 4 32 277 81 336 8.14e-56 187
MS.gene068190.t1 AT1G78710 30.532 357 180 11 23 375 5 297 2.24e-53 179
MS.gene068190.t1 AT5G06230 38.057 247 134 4 50 277 59 305 5.00e-50 170
MS.gene068190.t1 AT3G06080 35.802 243 143 3 48 277 98 340 1.26e-49 170
MS.gene068190.t1 AT3G14850 36.328 256 148 5 122 371 1 247 7.47e-49 166
MS.gene068190.t1 AT2G31110 40.553 217 113 4 164 375 9 214 1.30e-48 164
MS.gene068190.t1 AT1G70230 32.486 354 187 15 53 375 79 411 1.31e-41 151
MS.gene068190.t1 AT4G25360 31.200 375 210 15 37 375 162 524 1.92e-41 152
MS.gene068190.t1 AT4G25360 31.200 375 210 15 37 375 162 524 1.92e-41 152
MS.gene068190.t1 AT1G01430 28.571 371 226 13 37 375 84 447 1.35e-40 149
MS.gene068190.t1 AT4G01080 29.060 351 210 13 49 371 87 426 2.46e-38 142
MS.gene068190.t1 AT5G51640 29.223 373 218 13 39 375 126 488 8.00e-38 142
MS.gene068190.t1 AT5G64020 28.212 358 216 14 53 375 57 408 5.20e-37 138
MS.gene068190.t1 AT4G11090 30.055 366 198 16 51 375 77 425 8.69e-37 138
MS.gene068190.t1 AT2G37720 28.814 354 211 14 51 375 141 482 2.04e-35 135
MS.gene068190.t1 AT5G64470 27.095 358 228 12 43 375 45 394 2.07e-35 134
MS.gene068190.t1 AT5G64470 27.473 364 225 13 43 375 45 400 2.53e-35 134
MS.gene068190.t1 AT5G20680 27.202 386 225 18 26 375 92 457 2.65e-35 135
MS.gene068190.t1 AT5G20680 27.202 386 225 18 26 375 168 533 6.76e-35 134
MS.gene068190.t1 AT4G23790 28.125 384 209 15 34 371 61 423 6.93e-35 133
MS.gene068190.t1 AT5G20680 27.202 386 225 18 26 375 186 551 8.02e-35 134
MS.gene068190.t1 AT5G20680 27.202 386 225 18 26 375 186 551 8.02e-35 134
MS.gene068190.t1 AT5G20680 27.202 386 225 18 26 375 186 551 8.02e-35 134
MS.gene068190.t1 AT5G20680 27.202 386 225 18 26 375 186 551 8.02e-35 134
MS.gene068190.t1 AT5G15900 28.926 363 224 11 40 375 54 409 2.05e-34 132
MS.gene068190.t1 AT5G15900 28.926 363 224 11 40 375 73 428 2.50e-34 132
MS.gene068190.t1 AT5G15890 28.691 359 209 11 47 375 181 522 4.58e-33 129
MS.gene068190.t1 AT3G02440 27.273 352 217 12 53 375 127 468 6.34e-32 125
MS.gene068190.t1 AT3G02440 27.273 352 217 12 53 375 135 476 7.20e-32 125
MS.gene068190.t1 AT2G14530 27.424 361 214 13 50 375 59 406 1.07e-31 124
MS.gene068190.t1 AT3G28150 27.778 378 209 18 39 375 56 410 3.92e-31 122
MS.gene068190.t1 AT5G64470 27.200 250 163 7 43 275 45 292 7.04e-24 100
MS.gene068190.t1 AT5G64470 27.200 250 163 7 43 275 45 292 1.10e-23 100

Find 85 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTGGTGTGCCTGATATT+TGG 0.189016 1.4:-36506589 MS.gene068190:CDS
AGACATCAATTGAGTTTCTT+TGG 0.205327 1.4:-36507754 MS.gene068190:CDS
TGCTAGATTCTCTATTGTTT+TGG 0.225439 1.4:+36509638 None:intergenic
CTATTCTTTGTTTCTCATCT+TGG 0.240185 1.4:+36506642 None:intergenic
TAATACCAACTGGTAGAAAA+AGG 0.249328 1.4:-36507902 MS.gene068190:CDS
CTTATGGTTGCTTATCAAAA+AGG 0.263528 1.4:-36507191 MS.gene068190:CDS
CCACTGCACATTATCTCTTC+TGG 0.264239 1.4:-36509713 MS.gene068190:CDS
TTTGATGCACTAAGGTTTCT+TGG 0.268531 1.4:-36508011 MS.gene068190:CDS
GCTGAAGAAAATGAGATTTC+CGG 0.315862 1.4:-36506741 MS.gene068190:CDS
ATTCCTCTGATTGCAGTCAT+TGG 0.349039 1.4:-36506616 MS.gene068190:CDS
GACATCAATTGAGTTTCTTT+GGG 0.362068 1.4:-36507753 MS.gene068190:CDS
AACATCTCATTCCAAATATC+AGG 0.370214 1.4:+36506578 None:intergenic
CCACTTCCACTTCTCATAAT+CGG 0.372276 1.4:+36509498 None:intergenic
GCATGTCACCTAGGCATAAC+AGG 0.386311 1.4:-36507100 MS.gene068190:intron
AAACAAGAGAGTCTTACATT+TGG 0.395362 1.4:-36507696 MS.gene068190:CDS
TCTTTGTTTCTCATCTTGGC+TGG 0.397185 1.4:+36506646 None:intergenic
TGGACGATGTTAACATCATC+AGG 0.399111 1.4:+36509658 None:intergenic
CACTTCTCATAATCGGAATC+TGG 0.405623 1.4:+36509505 None:intergenic
ATTGAATGGAAGGCCATTGC+AGG 0.414061 1.4:+36507864 None:intergenic
TGCAGTCATTGGTGCCTCCC+TGG 0.417455 1.4:-36506605 MS.gene068190:CDS
CTTACATTTGGATTTGATTG+AGG 0.428799 1.4:-36507684 MS.gene068190:CDS
ATGTCTTCATTACCATTGAA+TGG 0.434469 1.4:+36507850 None:intergenic
TTGAGGAGAATGCGAAGTAT+TGG 0.435112 1.4:-36507667 MS.gene068190:CDS
TCATTGTCGTAATATCTTGC+AGG 0.436722 1.4:+36506714 None:intergenic
AAAGAAAGCAAATGAGTCAT+TGG 0.443285 1.4:+36509757 None:intergenic
TGGAGCACTACTAAAGGTTC+AGG 0.445699 1.4:+36506770 None:intergenic
GCAGTTACTTGTCAAAAGAA+TGG 0.450896 1.4:-36509532 MS.gene068190:CDS
ATGGACATCCTTCAGTGTAT+AGG 0.463306 1.4:-36506676 MS.gene068190:CDS
GTAACTGCAGTACTAAGATA+AGG 0.467342 1.4:+36509547 None:intergenic
TTCCAAATATCAGGCACACC+AGG 0.469582 1.4:+36506587 None:intergenic
TCTGTAGGTTTGATGCACTA+AGG 0.472754 1.4:-36508019 MS.gene068190:intron
CAAGATGAGAAACAAAGAAT+AGG 0.477046 1.4:-36506641 MS.gene068190:CDS
TGCAATGGCCTTCCATTCAA+TGG 0.483402 1.4:-36507862 MS.gene068190:intron
GTACTAAGATAAGGGCAGTT+AGG 0.483942 1.4:+36509556 None:intergenic
CAGTTACTTGTCAAAAGAAT+GGG 0.497842 1.4:-36509531 MS.gene068190:CDS
GTACAAGGTGTAATACCAAC+TGG 0.502784 1.4:-36507912 MS.gene068190:CDS
TAACTGCAGTACTAAGATAA+GGG 0.511515 1.4:+36509548 None:intergenic
GTAATATCTTGCAGGTATAC+CGG 0.515454 1.4:+36506722 None:intergenic
GAAAGCCAACATCATCTTGT+GGG 0.520387 1.4:+36509689 None:intergenic
CTTCATTACCATTGAATGGA+AGG 0.525435 1.4:+36507854 None:intergenic
TATTTGATTCAGCTCAGTGG+TGG 0.527529 1.4:-36507625 MS.gene068190:CDS
TTCAATAATGAGAAATCAGT+GGG 0.529697 1.4:-36507952 MS.gene068190:CDS
CTTGGGATGGAACAACCACT+TGG 0.531140 1.4:+36509472 None:intergenic
CTGGACCCACAAGATGATGT+TGG 0.536816 1.4:-36509694 MS.gene068190:CDS
CCGATTATGAGAAGTGGAAG+TGG 0.536824 1.4:-36509498 MS.gene068190:CDS
GGGCAGTTAGGATCATAAAG+AGG 0.560599 1.4:+36509568 None:intergenic
AGGAAGAGAATCATGTTGGT+GGG 0.564160 1.4:-36507978 MS.gene068190:CDS
ACTCCTTGGAGCACTACTAA+AGG 0.565747 1.4:+36506764 None:intergenic
ACTGAGCACATGGGCAAGGT+GGG 0.567314 1.4:-36507168 MS.gene068190:CDS
GGAAGGCCATTGCAGGTCCA+TGG 0.570480 1.4:+36507871 None:intergenic
GGCAGTTAGGATCATAAAGA+GGG 0.572794 1.4:+36509569 None:intergenic
GACCTACCATGGACCTGCAA+TGG 0.573638 1.4:-36507877 MS.gene068190:CDS
GAGAAGGAAGAGAATCATGT+TGG 0.573655 1.4:-36507982 MS.gene068190:CDS
ATATAGTACCTGTTATGCCT+AGG 0.573860 1.4:+36507092 None:intergenic
TCTTTAGTATGCTTAGTACA+AGG 0.583313 1.4:-36507927 MS.gene068190:CDS
GTTCAGGAGCATGTTGCTGA+AGG 0.584155 1.4:+36506786 None:intergenic
GACTGAGCACATGGGCAAGG+TGG 0.587096 1.4:-36507169 MS.gene068190:CDS
ATGACTGCCTTACGCAGAGA+TGG 0.588976 1.4:-36506695 MS.gene068190:CDS
ATGAGTCATTGGTGTTGCCA+TGG 0.591707 1.4:+36509768 None:intergenic
TTGTATTTGATTCAGCTCAG+TGG 0.592724 1.4:-36507628 MS.gene068190:CDS
AGAAAGCCAACATCATCTTG+TGG 0.596913 1.4:+36509688 None:intergenic
CAAGTGGTTGTTCCATCCCA+AGG 0.598385 1.4:-36509471 MS.gene068190:intron
TTCTTCAGTTCAACTAACAG+TGG 0.601941 1.4:+36507728 None:intergenic
AATGACTGCAATCAGAGGAA+TGG 0.604666 1.4:+36506618 None:intergenic
AAGGACTGAGCACATGGGCA+AGG 0.610853 1.4:-36507172 MS.gene068190:CDS
AGGATGTCCATCTCTGCGTA+AGG 0.610897 1.4:+36506688 None:intergenic
GGCCATTGCAGGTCCATGGT+AGG 0.611844 1.4:+36507875 None:intergenic
GAGAATGCGAAGTATTGGAG+AGG 0.611883 1.4:-36507662 MS.gene068190:CDS
GTTGCCTTCCTATACACTGA+AGG 0.612680 1.4:+36506668 None:intergenic
AAGGAAGAGAATCATGTTGG+TGG 0.613045 1.4:-36507979 MS.gene068190:CDS
ATTCAATAATGAGAAATCAG+TGG 0.617219 1.4:-36507953 MS.gene068190:CDS
CAGATTCCGATTATGAGAAG+TGG 0.621301 1.4:-36509504 MS.gene068190:CDS
TCCAAATATCAGGCACACCA+GGG 0.626960 1.4:+36506588 None:intergenic
GCACCAATGACTGCAATCAG+AGG 0.627161 1.4:+36506613 None:intergenic
GAACCTTTAGTAGTGCTCCA+AGG 0.631877 1.4:-36506767 MS.gene068190:CDS
ACTGAGCTGAATCAAATACA+AGG 0.634640 1.4:+36507630 None:intergenic
ATACAGGTGGGATTACTACA+AGG 0.638309 1.4:-36507243 MS.gene068190:intron
AGGTGGGATTACTACAAGGA+GGG 0.648410 1.4:-36507239 MS.gene068190:CDS
CCAGAAGAGATAATGTGCAG+TGG 0.657294 1.4:+36509713 None:intergenic
TTACTTGTCAAAAGAATGGG+AGG 0.658568 1.4:-36509528 MS.gene068190:CDS
ACATCCTTCAGTGTATAGGA+AGG 0.659861 1.4:-36506672 MS.gene068190:CDS
CAGGTGGGATTACTACAAGG+AGG 0.703135 1.4:-36507240 MS.gene068190:CDS
AATGTGAACAGACCTTGGGA+TGG 0.727316 1.4:+36509459 None:intergenic
AAATATCAGGCACACCAGGG+AGG 0.749580 1.4:+36506591 None:intergenic
AAGTGGAAGTGGAAGCCAAG+TGG 0.762111 1.4:-36509487 MS.gene068190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGAAATCTAAAAAAAAT+TGG - chr1.4:36507572-36507591 MS.gene068190:intron 10.0%
!!! CTTAGATAAAATTTATATTT+TGG + chr1.4:36507167-36507186 None:intergenic 10.0%
!!! TAATAAATCTAGAATATATT+TGG + chr1.4:36507646-36507665 None:intergenic 10.0%
!! AGATTTATTATTCAAATTTG+TGG - chr1.4:36507656-36507675 MS.gene068190:CDS 15.0%
!! TATCTACTTAAATACAAATT+TGG + chr1.4:36508231-36508250 None:intergenic 15.0%
!!! AACTTTGTTTATCAATTAAA+TGG + chr1.4:36507324-36507343 None:intergenic 15.0%
!!! ATCATTTTTTTTTTTTGTAG+TGG + chr1.4:36507070-36507089 None:intergenic 15.0%
!!! TTGTATTATTGTAATTTGTA+CGG - chr1.4:36507832-36507851 MS.gene068190:intron 15.0%
!! AACAAAGTTTACTAATCAAA+AGG - chr1.4:36507335-36507354 MS.gene068190:intron 20.0%
!! AGTCCTTAAAATAAGTAAAA+TGG + chr1.4:36508148-36508167 None:intergenic 20.0%
!! CTTAAAATAAGTAAAATGGA+AGG + chr1.4:36508144-36508163 None:intergenic 20.0%
!! GAAATCTAAAAAAAATTGGT+TGG - chr1.4:36507576-36507595 MS.gene068190:intron 20.0%
!! TGATTTCCGATAAAATATTA+TGG + chr1.4:36509366-36509385 None:intergenic 20.0%
!!! ATAAAACCACAAATATTTTC+AGG + chr1.4:36508072-36508091 None:intergenic 20.0%
!!! CTTCCATTTTACTTATTTTA+AGG - chr1.4:36508142-36508161 MS.gene068190:intron 20.0%
!!! GACTAACATTTACAATTTTA+TGG + chr1.4:36507913-36507932 None:intergenic 20.0%
!!! TTTGTGGTTTTATTTTAATG+TGG - chr1.4:36508079-36508098 MS.gene068190:intron 20.0%
! AAAATAAGTAAAATGGAAGG+TGG + chr1.4:36508141-36508160 None:intergenic 25.0%
! AAACTATCTTAGAAAGCTTA+TGG - chr1.4:36508945-36508964 MS.gene068190:intron 25.0%
! AACTATCTTAGAAAGCTTAT+GGG - chr1.4:36508946-36508965 MS.gene068190:intron 25.0%
! AATGCCAAAAACAAAATCAT+AGG + chr1.4:36509438-36509457 None:intergenic 25.0%
! ATTCAATAATGAGAAATCAG+TGG - chr1.4:36508375-36508394 MS.gene068190:intron 25.0%
! CTTCTAACAGAAAAACTTAA+GGG + chr1.4:36508005-36508024 None:intergenic 25.0%
! GTAGATATATTTCAACACTT+TGG - chr1.4:36508244-36508263 MS.gene068190:intron 25.0%
! GTGTATAGAAGAAAACAAAA+AGG + chr1.4:36506899-36506918 None:intergenic 25.0%
! GTTCTTGAAATTGTAAATGT+CGG + chr1.4:36508209-36508228 None:intergenic 25.0%
! TAATACAAAAACCATGACTA+TGG + chr1.4:36507820-36507839 None:intergenic 25.0%
! TATAGAAGAAAACAAAAAGG+TGG + chr1.4:36506896-36506915 None:intergenic 25.0%
! TTAAGCCACTATTTCAATTT+CGG + chr1.4:36507384-36507403 None:intergenic 25.0%
! TTCAATAATGAGAAATCAGT+GGG - chr1.4:36508376-36508395 MS.gene068190:intron 25.0%
! TTTATCAATTAAATGGATGC+AGG + chr1.4:36507317-36507336 None:intergenic 25.0%
!! ACGACACCATAATATTTTAT+CGG - chr1.4:36509357-36509376 MS.gene068190:intron 25.0%
!! ACTTGTTAAGGACTAAAAAA+AGG + chr1.4:36507260-36507279 None:intergenic 25.0%
!! ATTTTGCCTGAAAATATTTG+TGG - chr1.4:36508063-36508082 MS.gene068190:intron 25.0%
!! GACAAAGATAAACAAGTTTT+AGG + chr1.4:36509280-36509299 None:intergenic 25.0%
!! TATTGTAATTTGTACGGATA+TGG - chr1.4:36507838-36507857 MS.gene068190:intron 25.0%
!! TGTTAAGATTTAGAACTCAA+TGG + chr1.4:36509407-36509426 None:intergenic 25.0%
!! TTCGTTAAACTTTCTAAAAG+TGG - chr1.4:36509008-36509027 MS.gene068190:intron 25.0%
!!! AAAATGACTTTCGTTTTTTG+AGG + chr1.4:36509203-36509222 None:intergenic 25.0%
!!! AAATGACTTTCGTTTTTTGA+GGG + chr1.4:36509202-36509221 None:intergenic 25.0%
!!! ACAAATATTTTCAGGCAAAA+TGG + chr1.4:36508064-36508083 None:intergenic 25.0%
!!! TTGGTGTCAATAATTTACAA+AGG + chr1.4:36508528-36508547 None:intergenic 25.0%
!!! TTTTTTTTTTGTAGTGGTCT+GGG + chr1.4:36507064-36507083 None:intergenic 25.0%
!!! TTTTTTTTTTTGTAGTGGTC+TGG + chr1.4:36507065-36507084 None:intergenic 25.0%
AAACAAGAGAGTCTTACATT+TGG - chr1.4:36508632-36508651 MS.gene068190:intron 30.0%
AAAGAAAGCAAATGAGTCAT+TGG + chr1.4:36506574-36506593 None:intergenic 30.0%
AAATAGTGGCTTAATGATGT+TGG - chr1.4:36507390-36507409 MS.gene068190:intron 30.0%
AACATCTCATTCCAAATATC+AGG + chr1.4:36509753-36509772 None:intergenic 30.0%
AAGTTATGCATATAGGAGAT+GGG + chr1.4:36507797-36507816 None:intergenic 30.0%
AATAAGCCAAAATCAGCTTA+TGG - chr1.4:36508969-36508988 MS.gene068190:intron 30.0%
AATACCAACTGGTAGAAAAA+GGG - chr1.4:36508427-36508446 MS.gene068190:intron 30.0%
AATGGAATGATATGAAGAGA+AGG + chr1.4:36508784-36508803 None:intergenic 30.0%
ACTATGGAAGTTATGCATAT+AGG + chr1.4:36507804-36507823 None:intergenic 30.0%
AGACATCAATTGAGTTTCTT+TGG - chr1.4:36508574-36508593 MS.gene068190:intron 30.0%
AGTCTCCAAATTTCATGAAT+AGG - chr1.4:36507938-36507957 MS.gene068190:CDS 30.0%
AGTTGCCTATTCATGAAATT+TGG + chr1.4:36507946-36507965 None:intergenic 30.0%
ATGTCTTCATTACCATTGAA+TGG + chr1.4:36508481-36508500 None:intergenic 30.0%
CAAGATGAGAAACAAAGAAT+AGG - chr1.4:36509687-36509706 MS.gene068190:CDS 30.0%
CAGTTACTTGTCAAAAGAAT+GGG - chr1.4:36506797-36506816 MS.gene068190:CDS 30.0%
CCTTCTAACAGAAAAACTTA+AGG + chr1.4:36508006-36508025 None:intergenic 30.0%
CTATCAGAGAAAATTGTGTT+TGG + chr1.4:36508547-36508566 None:intergenic 30.0%
CTTACATTTGGATTTGATTG+AGG - chr1.4:36508644-36508663 MS.gene068190:intron 30.0%
CTTATGGTTGCTTATCAAAA+AGG - chr1.4:36509137-36509156 MS.gene068190:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr1.4:36507025-36507044 MS.gene068190:intron 30.0%
GACATCAATTGAGTTTCTTT+GGG - chr1.4:36508575-36508594 MS.gene068190:intron 30.0%
GATCAAAAACATGACTCTTA+TGG - chr1.4:36509121-36509140 MS.gene068190:intron 30.0%
GGATTAAAAACTGAGATCAA+TGG + chr1.4:36507776-36507795 None:intergenic 30.0%
TAAAAACTGAGATCAATGGA+GGG + chr1.4:36507772-36507791 None:intergenic 30.0%
TAACTGCAGTACTAAGATAA+GGG + chr1.4:36506783-36506802 None:intergenic 30.0%
TAAGCCACTATTTCAATTTC+GGG + chr1.4:36507383-36507402 None:intergenic 30.0%
TAATACCAACTGGTAGAAAA+AGG - chr1.4:36508426-36508445 MS.gene068190:intron 30.0%
TCAACCAAAATTGATACAGA+AGG + chr1.4:36507461-36507480 None:intergenic 30.0%
TCTTTAGTATGCTTAGTACA+AGG - chr1.4:36508401-36508420 MS.gene068190:intron 30.0%
TCTTTCTTGAAAATACAGGT+GGG - chr1.4:36509073-36509092 MS.gene068190:intron 30.0%
TGAGAGAGAAATTGAGAAAA+TGG + chr1.4:36508802-36508821 None:intergenic 30.0%
TGCTTCTTTCTTGAAAATAC+AGG - chr1.4:36509069-36509088 MS.gene068190:intron 30.0%
TTAAAAACTGAGATCAATGG+AGG + chr1.4:36507773-36507792 None:intergenic 30.0%
TTCTTTCTTGAAAATACAGG+TGG - chr1.4:36509072-36509091 MS.gene068190:intron 30.0%
TTTACTGTGCATAACAATGA+TGG + chr1.4:36507093-36507112 None:intergenic 30.0%
! AAGATTTAGAACTCAATGGT+TGG + chr1.4:36509403-36509422 None:intergenic 30.0%
! AGTTTTTATCAACTCTGAGT+AGG - chr1.4:36507712-36507731 MS.gene068190:CDS 30.0%
! ATTTTCTCAATTTCTCTCTC+AGG - chr1.4:36508801-36508820 MS.gene068190:intron 30.0%
! CAAACACAATTTTCTCTGAT+AGG - chr1.4:36508545-36508564 MS.gene068190:intron 30.0%
! CCTTAAGTTTTTCTGTTAGA+AGG - chr1.4:36508003-36508022 MS.gene068190:CDS 30.0%
! CTATTCTTTGTTTCTCATCT+TGG + chr1.4:36509689-36509708 None:intergenic 30.0%
! GATTCCTTCTGTATCAATTT+TGG - chr1.4:36507454-36507473 MS.gene068190:intron 30.0%
! GTTTTTATCAACTCTGAGTA+GGG - chr1.4:36507713-36507732 MS.gene068190:CDS 30.0%
! TGACTTTTCTGTTGGAAAAT+GGG - chr1.4:36506720-36506739 MS.gene068190:CDS 30.0%
! TGCTAGATTCTCTATTGTTT+TGG + chr1.4:36506693-36506712 None:intergenic 30.0%
! TTTTTATCAACTCTGAGTAG+GGG - chr1.4:36507714-36507733 MS.gene068190:CDS 30.0%
!!! TTCGCCTATGATTTTGTTTT+TGG - chr1.4:36509431-36509450 MS.gene068190:intron 30.0%
ACTGAGCTGAATCAAATACA+AGG + chr1.4:36508701-36508720 None:intergenic 35.0%
AGCTAGTTAAGTTTACAAGC+AGG + chr1.4:36508282-36508301 None:intergenic 35.0%
ATATAGTACCTGTTATGCCT+AGG + chr1.4:36509239-36509258 None:intergenic 35.0%
ATATTTGGCTACTTGTGTCA+AGG + chr1.4:36507631-36507650 None:intergenic 35.0%
ATGCATAACTTCCATAGTCA+TGG - chr1.4:36507806-36507825 MS.gene068190:intron 35.0%
CAAAATCAGCTTATGGACAT+GGG - chr1.4:36508976-36508995 MS.gene068190:intron 35.0%
CAAACCCGAAATTGAAATAG+TGG - chr1.4:36507376-36507395 MS.gene068190:intron 35.0%
CTTCATTACCATTGAATGGA+AGG + chr1.4:36508477-36508496 None:intergenic 35.0%
GAAGTTATGCATATAGGAGA+TGG + chr1.4:36507798-36507817 None:intergenic 35.0%
GCAGTTACTTGTCAAAAGAA+TGG - chr1.4:36506796-36506815 MS.gene068190:CDS 35.0%
GCTGAAGAAAATGAGATTTC+CGG - chr1.4:36509587-36509606 MS.gene068190:CDS 35.0%
GGTTTCTTGGAAAAATGAGA+AGG - chr1.4:36508330-36508349 MS.gene068190:intron 35.0%
GTAACTGCAGTACTAAGATA+AGG + chr1.4:36506784-36506803 None:intergenic 35.0%
GTAATATCTTGCAGGTATAC+CGG + chr1.4:36509609-36509628 None:intergenic 35.0%
TAGTCCTTAACAAGTGTCTT+CGG - chr1.4:36507265-36507284 MS.gene068190:intron 35.0%
TCAAAAGGAACCACACTTTA+AGG - chr1.4:36507350-36507369 MS.gene068190:intron 35.0%
TCATTGTCGTAATATCTTGC+AGG + chr1.4:36509617-36509636 None:intergenic 35.0%
TCCATGTAATCAACTTCACT+TGG + chr1.4:36509333-36509352 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr1.4:36507030-36507049 MS.gene068190:intron 35.0%
TTACTTGTCAAAAGAATGGG+AGG - chr1.4:36506800-36506819 MS.gene068190:CDS 35.0%
TTCTTCAGTTCAACTAACAG+TGG + chr1.4:36508603-36508622 None:intergenic 35.0%
TTGTATTTGATTCAGCTCAG+TGG - chr1.4:36508700-36508719 MS.gene068190:intron 35.0%
TTTGATGCACTAAGGTTTCT+TGG - chr1.4:36508317-36508336 MS.gene068190:intron 35.0%
! AACTAGCTTATTACCTCTGT+AGG - chr1.4:36508294-36508313 MS.gene068190:intron 35.0%
! AAGAGATGTGACTTTTCTGT+TGG - chr1.4:36506712-36506731 MS.gene068190:CDS 35.0%
! ACCAAGTGAAGTTGATTACA+TGG - chr1.4:36509329-36509348 MS.gene068190:intron 35.0%
! GTGACTTTTCTGTTGGAAAA+TGG - chr1.4:36506719-36506738 MS.gene068190:CDS 35.0%
! TTAGAACTCAATGGTTGGTT+TGG + chr1.4:36509398-36509417 None:intergenic 35.0%
!!! GGTTTTTTATGCAGGGAAAA+TGG - chr1.4:36509477-36509496 MS.gene068190:CDS 35.0%
!!! TCCTTACGAGCTTGTTTTAT+CGG + chr1.4:36508736-36508755 None:intergenic 35.0%
!!! TGTAAGACTCTCTTGTTTTC+TGG + chr1.4:36508630-36508649 None:intergenic 35.0%
AAGGAAGAGAATCATGTTGG+TGG - chr1.4:36508349-36508368 MS.gene068190:intron 40.0%
AATCTCACTATCACTTGTGG+GGG + chr1.4:36507519-36507538 None:intergenic 40.0%
AATGACTGCAATCAGAGGAA+TGG + chr1.4:36509713-36509732 None:intergenic 40.0%
ACATCCTTCAGTGTATAGGA+AGG - chr1.4:36509656-36509675 MS.gene068190:CDS 40.0%
AGAAAGCCAACATCATCTTG+TGG + chr1.4:36506643-36506662 None:intergenic 40.0%
AGGAAGAGAATCATGTTGGT+GGG - chr1.4:36508350-36508369 MS.gene068190:intron 40.0%
ATACAGGTGGGATTACTACA+AGG - chr1.4:36509085-36509104 MS.gene068190:intron 40.0%
ATCAAAAAGGACTGAGCACA+TGG - chr1.4:36509150-36509169 MS.gene068190:intron 40.0%
ATGGACATCCTTCAGTGTAT+AGG - chr1.4:36509652-36509671 MS.gene068190:CDS 40.0%
ATTCCTCTGATTGCAGTCAT+TGG - chr1.4:36509712-36509731 MS.gene068190:CDS 40.0%
ATTTCACTGTCTCTAGCGAT+TGG - chr1.4:36509455-36509474 MS.gene068190:intron 40.0%
CAATCTCACTATCACTTGTG+GGG + chr1.4:36507520-36507539 None:intergenic 40.0%
CACTTCTCATAATCGGAATC+TGG + chr1.4:36506826-36506845 None:intergenic 40.0%
CAGATTCCGATTATGAGAAG+TGG - chr1.4:36506824-36506843 MS.gene068190:CDS 40.0%
CATAAAATATGCAAGGTCCG+GGG - chr1.4:36507032-36507051 MS.gene068190:intron 40.0%
CCAAAATCAGCTTATGGACA+TGG - chr1.4:36508975-36508994 MS.gene068190:intron 40.0%
CCAATCTCACTATCACTTGT+GGG + chr1.4:36507521-36507540 None:intergenic 40.0%
CCACTTCCACTTCTCATAAT+CGG + chr1.4:36506833-36506852 None:intergenic 40.0%
GAAAGCCAACATCATCTTGT+GGG + chr1.4:36506642-36506661 None:intergenic 40.0%
GAGAAGGAAGAGAATCATGT+TGG - chr1.4:36508346-36508365 MS.gene068190:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr1.4:36507031-36507050 MS.gene068190:intron 40.0%
GGAATGATATGAAGAGAAGG+TGG + chr1.4:36508781-36508800 None:intergenic 40.0%
GGCAGTTAGGATCATAAAGA+GGG + chr1.4:36506762-36506781 None:intergenic 40.0%
GTACAAGGTGTAATACCAAC+TGG - chr1.4:36508416-36508435 MS.gene068190:intron 40.0%
GTACTAAGATAAGGGCAGTT+AGG + chr1.4:36506775-36506794 None:intergenic 40.0%
GTGGATGATGAGTTTGTGAA+TGG - chr1.4:36507868-36507887 MS.gene068190:CDS 40.0%
TATTTGATTCAGCTCAGTGG+TGG - chr1.4:36508703-36508722 MS.gene068190:intron 40.0%
TCAAAAAGGACTGAGCACAT+GGG - chr1.4:36509151-36509170 MS.gene068190:intron 40.0%
TCCAATCTCACTATCACTTG+TGG + chr1.4:36507522-36507541 None:intergenic 40.0%
TCCGATAAAACAAGCTCGTA+AGG - chr1.4:36508732-36508751 MS.gene068190:intron 40.0%
TCTGTAGGTTTGATGCACTA+AGG - chr1.4:36508309-36508328 MS.gene068190:intron 40.0%
TGAAGGCTGAAAAATGGTAG+AGG + chr1.4:36509528-36509547 None:intergenic 40.0%
TGGACGATGTTAACATCATC+AGG + chr1.4:36506673-36506692 None:intergenic 40.0%
TGTTGCTGAAGGCTGAAAAA+TGG + chr1.4:36509534-36509553 None:intergenic 40.0%
TTAGTGCATCAAACCTACAG+AGG + chr1.4:36508310-36508329 None:intergenic 40.0%
TTGAGGAGAATGCGAAGTAT+TGG - chr1.4:36508661-36508680 MS.gene068190:intron 40.0%
TTTCACTGTCTCTAGCGATT+GGG - chr1.4:36509456-36509475 MS.gene068190:intron 40.0%
! ACTTGGTGAGATGTAAGACT+TGG + chr1.4:36509316-36509335 None:intergenic 40.0%
! CTTAAGAAAAGCACGCTCTA+AGG + chr1.4:36507423-36507442 None:intergenic 40.0%
! CTTAGAGCGTGCTTTTCTTA+AGG - chr1.4:36507421-36507440 MS.gene068190:intron 40.0%
! TCATTTTCTTCAGCACTCCT+TGG + chr1.4:36509581-36509600 None:intergenic 40.0%
! TCTTTGTTTCTCATCTTGGC+TGG + chr1.4:36509685-36509704 None:intergenic 40.0%
!! CCATGTCCATAAGCTGATTT+TGG + chr1.4:36508978-36508997 None:intergenic 40.0%
!! TTTTCAGAAGCATGTCACCT+AGG - chr1.4:36509219-36509238 MS.gene068190:intron 40.0%
!!! AGCGATTGGGTTTTTTATGC+AGG - chr1.4:36509469-36509488 MS.gene068190:intron 40.0%
!!! GCGATTGGGTTTTTTATGCA+GGG - chr1.4:36509470-36509489 MS.gene068190:intron 40.0%
AACTGAGATCAATGGAGGGT+TGG + chr1.4:36507768-36507787 None:intergenic 45.0%
AATGTGAACAGACCTTGGGA+TGG + chr1.4:36506872-36506891 None:intergenic 45.0%
AGAAAAAGGGTGACCTACCA+TGG - chr1.4:36508440-36508459 MS.gene068190:intron 45.0%
AGCCTAAAGACCGACTAATC+CGG + chr1.4:36507549-36507568 None:intergenic 45.0%
AGGTGGGATTACTACAAGGA+GGG - chr1.4:36509089-36509108 MS.gene068190:intron 45.0%
ATTGAATGGAAGGCCATTGC+AGG + chr1.4:36508467-36508486 None:intergenic 45.0%
CCACTGCACATTATCTCTTC+TGG - chr1.4:36506615-36506634 MS.gene068190:CDS 45.0%
CCAGAAGAGATAATGTGCAG+TGG + chr1.4:36506618-36506637 None:intergenic 45.0%
CCGATTATGAGAAGTGGAAG+TGG - chr1.4:36506830-36506849 MS.gene068190:CDS 45.0%
GAACCTTTAGTAGTGCTCCA+AGG - chr1.4:36509561-36509580 MS.gene068190:CDS 45.0%
GATAGTGAGATTGGATCTCC+CGG - chr1.4:36507527-36507546 MS.gene068190:intron 45.0%
GCAAAATGGTCCTTGTGACT+TGG + chr1.4:36508050-36508069 None:intergenic 45.0%
GGGCAGTTAGGATCATAAAG+AGG + chr1.4:36506763-36506782 None:intergenic 45.0%
GTACGGATATGGTAAGCTTG+TGG - chr1.4:36507849-36507868 MS.gene068190:intron 45.0%
GTTGCCTTCCTATACACTGA+AGG + chr1.4:36509663-36509682 None:intergenic 45.0%
TAAGCTCACGAGGACAATGA+TGG + chr1.4:36506991-36507010 None:intergenic 45.0%
TCCAAATATCAGGCACACCA+GGG + chr1.4:36509743-36509762 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG - chr1.4:36507003-36507022 MS.gene068190:intron 45.0%
TGCAATGGCCTTCCATTCAA+TGG - chr1.4:36508466-36508485 MS.gene068190:intron 45.0%
TGGCAATGTGAACAGACCTT+GGG + chr1.4:36506876-36506895 None:intergenic 45.0%
TTCCAAATATCAGGCACACC+AGG + chr1.4:36509744-36509763 None:intergenic 45.0%
! ACTCCTTGGAGCACTACTAA+AGG + chr1.4:36509567-36509586 None:intergenic 45.0%
! CCCACAAGTGATAGTGAGAT+TGG - chr1.4:36507518-36507537 MS.gene068190:intron 45.0%
! GGGTTTGAGACCTTAAAGTG+TGG + chr1.4:36507363-36507382 None:intergenic 45.0%
! GTCACCCTTTTTCTACCAGT+TGG + chr1.4:36508434-36508453 None:intergenic 45.0%
! TGCTCCGAAGACACTTGTTA+AGG + chr1.4:36507272-36507291 None:intergenic 45.0%
! TGGAGCACTACTAAAGGTTC+AGG + chr1.4:36509561-36509580 None:intergenic 45.0%
!! ATTGGATCTCCCGGATTAGT+CGG - chr1.4:36507536-36507555 MS.gene068190:intron 45.0%
!! GAGAATGCGAAGTATTGGAG+AGG - chr1.4:36508666-36508685 MS.gene068190:intron 45.0%
!! GTCCTTGTGACTTGGTATTG+CGG + chr1.4:36508042-36508061 None:intergenic 45.0%
AAATATCAGGCACACCAGGG+AGG + chr1.4:36509740-36509759 None:intergenic 50.0%
AAGTGGAAGTGGAAGCCAAG+TGG - chr1.4:36506841-36506860 MS.gene068190:intron 50.0%
AGGATGTCCATCTCTGCGTA+AGG + chr1.4:36509643-36509662 None:intergenic 50.0%
ATCAACTCTGAGTAGGGGAG+TGG - chr1.4:36507719-36507738 MS.gene068190:CDS 50.0%
ATGACTGCCTTACGCAGAGA+TGG - chr1.4:36509633-36509652 MS.gene068190:CDS 50.0%
ATGTTAACGTGCGCTCTCTG+TGG - chr1.4:36507127-36507146 MS.gene068190:CDS 50.0%
CAAGTGGTTGTTCCATCCCA+AGG - chr1.4:36506857-36506876 MS.gene068190:intron 50.0%
CAGGTGGGATTACTACAAGG+AGG - chr1.4:36509088-36509107 MS.gene068190:intron 50.0%
CTGGACCCACAAGATGATGT+TGG - chr1.4:36506634-36506653 MS.gene068190:CDS 50.0%
CTTGGGATGGAACAACCACT+TGG + chr1.4:36506859-36506878 None:intergenic 50.0%
GCACCAATGACTGCAATCAG+AGG + chr1.4:36509718-36509737 None:intergenic 50.0%
GCATGTCACCTAGGCATAAC+AGG - chr1.4:36509228-36509247 MS.gene068190:intron 50.0%
GCCTAAAGACCGACTAATCC+GGG + chr1.4:36507548-36507567 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - chr1.4:36507002-36507021 MS.gene068190:intron 50.0%
GTGGCAATGTGAACAGACCT+TGG + chr1.4:36506877-36506896 None:intergenic 50.0%
TCCCTGGTGTGCCTGATATT+TGG - chr1.4:36509739-36509758 MS.gene068190:CDS 50.0%
TGAGTAGGGGAGTGGAATGT+GGG - chr1.4:36507727-36507746 MS.gene068190:CDS 50.0%
! GTTCAGGAGCATGTTGCTGA+AGG + chr1.4:36509545-36509564 None:intergenic 50.0%
!! GGATTAGTCGGTCTTTAGGC+TGG - chr1.4:36507548-36507567 MS.gene068190:intron 50.0%
!! TCCCGGATTAGTCGGTCTTT+AGG - chr1.4:36507544-36507563 MS.gene068190:intron 50.0%
AAGGACTGAGCACATGGGCA+AGG - chr1.4:36509156-36509175 MS.gene068190:intron 55.0%
ACTGAGCACATGGGCAAGGT+GGG - chr1.4:36509160-36509179 MS.gene068190:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1.4:36507001-36507020 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1.4:36506998-36507017 MS.gene068190:intron 55.0%
CGCCGCAATACCAAGTCACA+AGG - chr1.4:36508037-36508056 MS.gene068190:intron 55.0%
CTGAGTAGGGGAGTGGAATG+TGG - chr1.4:36507726-36507745 MS.gene068190:CDS 55.0%
GACCTACCATGGACCTGCAA+TGG - chr1.4:36508451-36508470 MS.gene068190:intron 55.0%
AGTGGTCTGGGCTTGAACCC+CGG + chr1.4:36507052-36507071 None:intergenic 60.0%
GACTGAGCACATGGGCAAGG+TGG - chr1.4:36509159-36509178 MS.gene068190:intron 60.0%
GGAAGGCCATTGCAGGTCCA+TGG + chr1.4:36508460-36508479 None:intergenic 60.0%
GGCCATTGCAGGTCCATGGT+AGG + chr1.4:36508456-36508475 None:intergenic 60.0%
! TGCAGTCATTGGTGCCTCCC+TGG - chr1.4:36509723-36509742 MS.gene068190:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 36506562 36509788 36506562 ID=MS.gene068190
chr1.4 mRNA 36506562 36509788 36506562 ID=MS.gene068190.t1;Parent=MS.gene068190
chr1.4 exon 36509472 36509788 36509472 ID=MS.gene068190.t1.exon1;Parent=MS.gene068190.t1
chr1.4 CDS 36509472 36509788 36509472 ID=cds.MS.gene068190.t1;Parent=MS.gene068190.t1
chr1.4 exon 36507863 36508034 36507863 ID=MS.gene068190.t1.exon2;Parent=MS.gene068190.t1
chr1.4 CDS 36507863 36508034 36507863 ID=cds.MS.gene068190.t1;Parent=MS.gene068190.t1
chr1.4 exon 36507602 36507783 36507602 ID=MS.gene068190.t1.exon3;Parent=MS.gene068190.t1
chr1.4 CDS 36507602 36507783 36507602 ID=cds.MS.gene068190.t1;Parent=MS.gene068190.t1
chr1.4 exon 36507101 36507259 36507101 ID=MS.gene068190.t1.exon4;Parent=MS.gene068190.t1
chr1.4 CDS 36507101 36507259 36507101 ID=cds.MS.gene068190.t1;Parent=MS.gene068190.t1
chr1.4 exon 36506562 36506859 36506562 ID=MS.gene068190.t1.exon5;Parent=MS.gene068190.t1
chr1.4 CDS 36506562 36506859 36506562 ID=cds.MS.gene068190.t1;Parent=MS.gene068190.t1
Gene Sequence

>MS.gene068190

ATGGCAACACCAATGACTCATTTGCTTTCTTTTTTCTTGCTGTTCAGCATCTTCCACTGCACATTATCTCTTCTGGACCCACAAGATGATGTTGGCTTTCTAGTTGAACCTGATGATGTTAACATCGTCCAAAACAATAGAGAATCTAGCAAGAGATGTGACTTTTCTGTTGGAAAATGGGTTTATGATGAATCTTACCCTCTTTATGATCCTAACTGCCCTTATCTTAGTACTGCAGTTACTTGTCAAAAGAATGGGAGGCCAGATTCCGATTATGAGAAGTGGAAGTGGAAGCCAAGTGGTTGTTCCATCCCAAGGTCTGTTCACATTGCCACCTTTTTGTTTTCTTCTATACACTCTCATTTACTCAATATTTATTTATTTATTTATCATTTTTTTTATATTTAGTATATATATATATATGATCCATCATTGTCCTCGTGAGCTTAGCTCAGTTGGTTGGGACAATGCATAAAATATGCAAGGTCCGGGGTTCAAGCCCAGACCACTACAAAAAAAAAAAATGATCCATCATTGTTATGCACAGTAAATTAAAATTTGAGAAATGTTAACGTGCGCTCTCTGTGGATTTGTTAATAAGTCCAAAATATAAATTTTATCTAAGAAAAGATGCATTCAATAAAATAAAACTTTAAAAAACAATTTTTTTTTTATCTAAAATTTGTCAATTGTTTCCTTTTTTTAGTCCTTAACAAGTGTCTTCGGAGCACTTAAAAAATTTCAATAGTAGTCCTGCATCCATTTAATTGATAAACAAAGTTTACTAATCAAAAGGAACCACACTTTAAGGTCTCAAACCCGAAATTGAAATAGTGGCTTAATGATGTTGGTTTGAGACCTTAGAGCGTGCTTTTCTTAAGGTTTTATGTTCGATTCCTTCTGTATCAATTTTGGTTGACTAGTTATATAGAGATTGTTTTGACTTTAAATGAGCCCCCACAAGTGATAGTGAGATTGGATCTCCCGGATTAGTCGGTCTTTAGGCTGGATATTGAAATCTAAAAAAAATTGGTTGGACTTTTTCGTTAATTAATTTGAGTATTTACCTTGACACAAGTAGCCAAATATATTCTAGATTTATTATTCAAATTTGTGGTACTTTTGTCACTTTTTTATTTTTGTCAATGTTAGTTTTTATCAACTCTGAGTAGGGGAGTGGAATGTGGGATGTTATATGTCATTCCAACCCTCCATTGATCTCAGTTTTTAATCCCATCTCCTATATGCATAACTTCCATAGTCATGGTTTTTGTATTATTGTAATTTGTACGGATATGGTAAGCTTGTGGATGATGAGTTTGTGAATGGAGTAGATGATCTAATTCATCCATAAAATTGTAAATGTTAGTCATTTCAGTCTCCAAATTTCATGAATAGGCAACTACGTCTCATAGTTTGTAACATGTCAGTCATTTTAGTCCCTTAAGTTTTTCTGTTAGAAGGTATGAACTAGACGCCGCAATACCAAGTCACAAGGACCATTTTGCCTGAAAATATTTGTGGTTTTATTTTAATGTGGTTAAATTGTACAAAGACTATTTGTCTAGCTATTAAACCACCTTCCATTTTACTTATTTTAAGGACTATAAATGACTGATGTTCACAATTTCATGACTAAAGCGACCGACATTTACAATTTCAAGAACCAAATTTGTATTTAAGTAGATATATTTCAACACTTTGGTATGAACAAACTCCTGCTTGTAAACTTAACTAGCTTATTACCTCTGTAGGTTTGATGCACTAAGGTTTCTTGGAAAAATGAGAAGGAAGAGAATCATGTTGGTGGGTGATTCAATAATGAGAAATCAGTGGGAATCTTTAGTATGCTTAGTACAAGGTGTAATACCAACTGGTAGAAAAAGGGTGACCTACCATGGACCTGCAATGGCCTTCCATTCAATGGTAATGAAGACATTCATCAAACACATTTTCTTTTCTTCCTTTGTAAATTATTGACACCAAACACAATTTTCTCTGATAGGATTTTGAGACATCAATTGAGTTTCTTTGGGCACCACTGTTAGTTGAACTGAAGAAAAGTCCAGAAAACAAGAGAGTCTTACATTTGGATTTGATTGAGGAGAATGCGAAGTATTGGAGAGGAGTTGATATCCTTGTATTTGATTCAGCTCAGTGGTGGACTCACTCCGATAAAACAAGCTCGTAAGGAAGATTCTTCATCAATTAATATTCCACCTTCTCTTCATATCATTCCATTTTCTCAATTTCTCTCTCAGGACAAACTACTTAATTCAGCATTTATAGCATAAGCGTTTATCATTTAAGTAATTATGTAAAAGATATTTTTGCAACAAAAAATAAAATTAAGTCAAATTGTTTTTATATAAGTTGTTTTCGTAAACTATCTTAGAAAGCTTATGGGAATAAGCCAAAATCAGCTTATGGACATGGGATAAGTTGCTTCGTTAAACTTTCTAAAAGTGGCTTAATCTTAAATTTTGAATAAATGCTTCACATTTATATGCTTCTTTCTTGAAAATACAGGTGGGATTACTACAAGGAGGGAAATAATCTGATCAAAAACATGACTCTTATGGTTGCTTATCAAAAAGGACTGAGCACATGGGCAAGGTGGGTCGATCTAAATCTAAACCCTCAAAAAACGAAAGTCATTTTCAGAAGCATGTCACCTAGGCATAACAGGTACTATATATACTCTACTTTTATATGCCTAAAACTTGTTTATCTTTGTCTATACAATAACAACCAAGTCTTACATCTCACCAAGTGAAGTTGATTACATGGATCAAACGACACCATAATATTTTATCGGAAATCATGTTTATAGCCAAACCAACCATTGAGTTCTAAATCTTAACAGTTTTTCGCCTATGATTTTGTTTTTGGCATTTCACTGTCTCTAGCGATTGGGTTTTTTATGCAGGGAAAATGGTTCGAAATGCGACAATCAGAAACAACCTCTACCATTTTTCAGCCTTCAGCAACATGCTCCTGAACCTTTAGTAGTGCTCCAAGGAGTGCTGAAGAAAATGAGATTTCCGGTATACCTGCAAGATATTACGACAATGACTGCCTTACGCAGAGATGGACATCCTTCAGTGTATAGGAAGGCAACCAGCCAAGATGAGAAACAAAGAATAGGCCATTCCTCTGATTGCAGTCATTGGTGCCTCCCTGGTGTGCCTGATATTTGGAATGAGATGTTGAGTGCGCTGCTTTGA
Protein sequence

>MS.gene068190.t1

MATPMTHLLSFFLLFSIFHCTLSLLDPQDDVGFLVEPDDVNIVQNNRESSKRCDFSVGKWVYDESYPLYDPNCPYLSTAVTCQKNGRPDSDYEKWKWKPSGCSIPRFDALRFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGRKRVTYHGPAMAFHSMDFETSIEFLWAPLLVELKKSPENKRVLHLDLIEENAKYWRGVDILVFDSAQWWTHSDKTSSWDYYKEGNNLIKNMTLMVAYQKGLSTWARWVDLNLNPQKTKVIFRSMSPRHNRENGSKCDNQKQPLPFFSLQQHAPEPLVVLQGVLKKMRFPVYLQDITTMTALRRDGHPSVYRKATSQDEKQRIGHSSDCSHWCLPGVPDIWNEMLSALL