Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06820.t1 | XP_003602381.2 | 87.9 | 321 | 31 | 3 | 1 | 321 | 41 | 353 | 4.10E-137 | 497.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06820.t1 | P19954 | 64.2 | 243 | 82 | 3 | 82 | 321 | 62 | 302 | 4.3e-82 | 306.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06820.t1 | G7J8Z9 | 87.9 | 321 | 31 | 3 | 1 | 321 | 41 | 353 | 3.0e-137 | 497.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene06820 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene050076 | MS.gene06820 | 0.822029 | 2.95E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene06820 | 0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene06820 | 0.845224 | 4.64E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene06820 | 0.822856 | 1.89E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene06820 | 0.811448 | 6.96E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene06820 | 0.834278 | 3.29E-56 | -1.69E-46 |
| MS.gene050770 | MS.gene06820 | 0.83466 | 2.64E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene06820 | 0.864824 | 9.21E-65 | -1.69E-46 |
| MS.gene051471 | MS.gene06820 | 0.827964 | 1.17E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene06820 | 0.811644 | 6.31E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene06820 | 0.832754 | 7.89E-56 | -1.69E-46 |
| MS.gene052290 | MS.gene06820 | 0.867928 | 9.53E-66 | -1.69E-46 |
| MS.gene053009 | MS.gene06820 | 0.829951 | 3.86E-55 | -1.69E-46 |
| MS.gene053103 | MS.gene06820 | 0.816259 | 6.06E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene06820 | 0.81399 | 1.93E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene06820 | 0.815658 | 8.26E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene06820 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene054376 | MS.gene06820 | 0.835247 | 1.88E-56 | -1.69E-46 |
| MS.gene054802 | MS.gene06820 | 0.811181 | 7.96E-51 | -1.69E-46 |
| MS.gene054803 | MS.gene06820 | 0.809846 | 1.55E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene06820 | 0.816173 | 6.34E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene06820 | 0.89101 | 5.86E-74 | -1.69E-46 |
| MS.gene055397 | MS.gene06820 | 0.864778 | 9.52E-65 | -1.69E-46 |
| MS.gene055497 | MS.gene06820 | -0.82253 | 2.26E-53 | -1.69E-46 |
| MS.gene055499 | MS.gene06820 | 0.838768 | 2.36E-57 | -1.69E-46 |
| MS.gene055896 | MS.gene06820 | 0.834081 | 3.68E-56 | -1.69E-46 |
| MS.gene056609 | MS.gene06820 | 0.845541 | 3.81E-59 | -1.69E-46 |
| MS.gene056897 | MS.gene06820 | 0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene06820 | 0.871059 | 9.12E-67 | -1.69E-46 |
| MS.gene057246 | MS.gene06820 | 0.945338 | 3.68E-104 | -1.69E-46 |
| MS.gene057295 | MS.gene06820 | 0.850679 | 1.45E-60 | -1.69E-46 |
| MS.gene058082 | MS.gene06820 | 0.829587 | 4.74E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene06820 | 0.811512 | 6.75E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene06820 | 0.811029 | 8.59E-51 | -1.69E-46 |
| MS.gene059858 | MS.gene06820 | 0.806669 | 7.35E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene06820 | 0.829345 | 5.42E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene06820 | 0.854233 | 1.41E-61 | -1.69E-46 |
| MS.gene061041 | MS.gene06820 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene06820 | 0.802798 | 4.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06820.t1 | MTR_3g092720 | 93.769 | 321 | 12 | 3 | 1 | 321 | 41 | 353 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06820.t1 | AT5G24490 | 71.130 | 239 | 67 | 2 | 84 | 321 | 71 | 308 | 2.37e-120 | 348 |
Find 101 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGGTGACTTGGTCTTTA+TGG | 0.117605 | 3.1:+74765259 | None:intergenic |
| GCTGCTGCCGCCGCGGCGTT+TGG | 0.274036 | 3.1:+74765163 | None:intergenic |
| ATTGCTTCAAACACGGTTAA+AGG | 0.283097 | 3.1:+74764090 | None:intergenic |
| AAGAGGAGGAGGATGGAAAA+AGG | 0.283986 | 3.1:+74765336 | None:intergenic |
| ATCTGCTTCACCGTTTCCTT+TGG | 0.285013 | 3.1:+74763837 | None:intergenic |
| AAGAAAGCTGAGAAAGATTA+AGG | 0.301741 | 3.1:-74764545 | MS.gene06820:CDS |
| AAACGGTGAAGCAGATAAAT+TGG | 0.329912 | 3.1:-74763830 | MS.gene06820:CDS |
| CGCCGCGGCGGCAGCAGCGG+CGG | 0.337270 | 3.1:-74765158 | MS.gene06820:CDS |
| ACTCGTGGTGGAGGAGAATT+TGG | 0.356620 | 3.1:-74764792 | MS.gene06820:CDS |
| AAAAGAAAAGAAGGAGGTTA+TGG | 0.362880 | 3.1:-74763871 | MS.gene06820:CDS |
| TCTGCTTCACCGTTTCCTTT+GGG | 0.387106 | 3.1:+74763838 | None:intergenic |
| TTAGCCGGTTCAACCACTAT+AGG | 0.402037 | 3.1:+74763805 | None:intergenic |
| GCATGGGGTGGTGCGGGCTG+AGG | 0.403257 | 3.1:-74764620 | MS.gene06820:CDS |
| TACCTATGCGAGTATAGATT+TGG | 0.408357 | 3.1:-74764584 | MS.gene06820:CDS |
| ACCTCGCATCTACGTGTTCT+AGG | 0.409433 | 3.1:+74764762 | None:intergenic |
| AAAGAGGCATGGGGTGGTGC+GGG | 0.416801 | 3.1:-74764626 | MS.gene06820:CDS |
| GCCACATGAAGGGATCTAAT+AGG | 0.418680 | 3.1:-74764501 | MS.gene06820:CDS |
| AAACGCCGCGGCGGCAGCAG+CGG | 0.425141 | 3.1:-74765161 | MS.gene06820:CDS |
| TCTCCGTTGTTTGTATGTCA+TGG | 0.434579 | 3.1:-74765130 | MS.gene06820:CDS |
| GAAGAAGAAGAGGAGGAGGA+TGG | 0.440212 | 3.1:+74765329 | None:intergenic |
| TCCTCATCCTGTGTGGGTAA+TGG | 0.447494 | 3.1:+74764454 | None:intergenic |
| TTCCGTCAAATTAATCATCC+AGG | 0.449850 | 3.1:-74765093 | MS.gene06820:CDS |
| AGAGGAAGAAGAAGAGGAGG+AGG | 0.461261 | 3.1:+74765325 | None:intergenic |
| TGTAGAGAGGGTTCTTTAGC+CGG | 0.466266 | 3.1:+74763790 | None:intergenic |
| GTCTTTATGGAGGAAGGTAG+AGG | 0.468202 | 3.1:+74765272 | None:intergenic |
| ACCCTGGATGATTAATTTGA+CGG | 0.468958 | 3.1:+74765091 | None:intergenic |
| TCCTTTCATTCTTGTAGAGA+GGG | 0.474483 | 3.1:+74763778 | None:intergenic |
| CTTTGTTTACAAAGAGGCAT+GGG | 0.478410 | 3.1:-74764636 | MS.gene06820:CDS |
| ATTGTATACAAAAGAAAAGA+AGG | 0.479149 | 3.1:-74763880 | MS.gene06820:CDS |
| CTCCGTTGTTTGTATGTCAT+GGG | 0.482798 | 3.1:-74765129 | MS.gene06820:CDS |
| AAGGTTTGTGTGGAAGTTGA+AGG | 0.492805 | 3.1:+74765355 | None:intergenic |
| GGAGCCTATAGTGGTTGAAC+CGG | 0.496037 | 3.1:-74763809 | MS.gene06820:CDS |
| AACTGAAATCTCCCCACAAA+AGG | 0.497376 | 3.1:-74764425 | MS.gene06820:CDS |
| CAAAGAGGCATGGGGTGGTG+CGG | 0.497915 | 3.1:-74764627 | MS.gene06820:CDS |
| AGCAATTGACCAGTTGGAAA+TGG | 0.498256 | 3.1:-74764073 | MS.gene06820:CDS |
| CTCATTATTCCCAAAGGAAA+CGG | 0.502483 | 3.1:-74763847 | MS.gene06820:CDS |
| CTTCATTCATAATATGTCAA+TGG | 0.507528 | 3.1:-74765384 | None:intergenic |
| TTCTCCTGTCAAGAATGTTG+TGG | 0.508305 | 3.1:+74765238 | None:intergenic |
| GGAAGAAGAAGAACTTATTG+AGG | 0.514048 | 3.1:-74764401 | MS.gene06820:CDS |
| CCCTCCACAACATTCTTGAC+AGG | 0.515980 | 3.1:-74765242 | MS.gene06820:CDS |
| AGATAAATTGGAGCCTATAG+TGG | 0.523119 | 3.1:-74763818 | MS.gene06820:CDS |
| CATGAGCAACCATTTCCAAC+TGG | 0.524804 | 3.1:+74764064 | None:intergenic |
| TCCTGTCAAGAATGTTGTGG+AGG | 0.525749 | 3.1:+74765241 | None:intergenic |
| ACTTTGTTTACAAAGAGGCA+TGG | 0.529041 | 3.1:-74764637 | MS.gene06820:CDS |
| AGAAGAAGAACTTATTGAGG+AGG | 0.531385 | 3.1:-74764398 | MS.gene06820:intron |
| GTTTGAAGCAATTGACCAGT+TGG | 0.532744 | 3.1:-74764079 | MS.gene06820:CDS |
| AGGTTTGTGTGGAAGTTGAA+GGG | 0.535418 | 3.1:+74765356 | None:intergenic |
| TTCCTTTCATTCTTGTAGAG+AGG | 0.539789 | 3.1:+74763777 | None:intergenic |
| GCCATTACCCACACAGGATG+AGG | 0.542075 | 3.1:-74764455 | MS.gene06820:CDS |
| GAATGTTGTGGAGGGTGACT+TGG | 0.542454 | 3.1:+74765250 | None:intergenic |
| CCGCGTAGAGGAAGAAGAAG+AGG | 0.546986 | 3.1:+74765319 | None:intergenic |
| TTCATCCTCCTCATCCTGTG+TGG | 0.547833 | 3.1:+74764447 | None:intergenic |
| TGATCATGGTCGCCACATGA+AGG | 0.549029 | 3.1:-74764512 | MS.gene06820:CDS |
| AACCGCCGCTGCTGCCGCCG+CGG | 0.549932 | 3.1:+74765156 | None:intergenic |
| GTTGTTTGTATGTCATGGGA+CGG | 0.558277 | 3.1:-74765125 | MS.gene06820:CDS |
| ACAACATTCTTGACAGGAGA+AGG | 0.561368 | 3.1:-74765236 | MS.gene06820:CDS |
| GCGTTTGGTTGTTGTTGTTG+TGG | 0.561693 | 3.1:+74765178 | None:intergenic |
| TCATCCTCCTCATCCTGTGT+GGG | 0.562138 | 3.1:+74764448 | None:intergenic |
| GACTTGGTCTTTATGGAGGA+AGG | 0.566043 | 3.1:+74765266 | None:intergenic |
| GATCATGGTCGCCACATGAA+GGG | 0.566295 | 3.1:-74764511 | MS.gene06820:CDS |
| CGTAGAGGAAGAAGAAGAGG+AGG | 0.569409 | 3.1:+74765322 | None:intergenic |
| ATTAATTTGACGGAAGAGAG+TGG | 0.569781 | 3.1:+74765101 | None:intergenic |
| CAGCTTTCTTTGAATGACCG+AGG | 0.571209 | 3.1:+74764558 | None:intergenic |
| ACAGCACGTAGAGGAGAAAG+TGG | 0.574125 | 3.1:-74764871 | MS.gene06820:CDS |
| AGACTATCTACTCGTGGTGG+AGG | 0.576666 | 3.1:-74764801 | MS.gene06820:CDS |
| AGGTTACTTTGTTTACAAAG+AGG | 0.577297 | 3.1:-74764642 | MS.gene06820:CDS |
| TTTATGGAGGAAGGTAGAGG+AGG | 0.579108 | 3.1:+74765275 | None:intergenic |
| TCCGTCAAATTAATCATCCA+GGG | 0.585766 | 3.1:-74765092 | MS.gene06820:CDS |
| CTGGTCAATTGCTTCAAACA+CGG | 0.587799 | 3.1:+74764083 | None:intergenic |
| GGTGCGGGCTGAGGAACATG+CGG | 0.592841 | 3.1:-74764611 | MS.gene06820:CDS |
| CAGCACGTAGAGGAGAAAGT+GGG | 0.593436 | 3.1:-74764870 | MS.gene06820:CDS |
| TACAGAAAGGCACCGCGTAG+AGG | 0.594586 | 3.1:+74765307 | None:intergenic |
| TGAAATCTCCCCACAAAAGG+AGG | 0.599934 | 3.1:-74764422 | MS.gene06820:CDS |
| GAGTATAGATTTGGTGTCCT+CGG | 0.603285 | 3.1:-74764575 | MS.gene06820:CDS |
| TATGGACTCATTATTCCCAA+AGG | 0.604836 | 3.1:-74763853 | MS.gene06820:CDS |
| GAGGAAGAGAGAGTACAGAA+AGG | 0.608429 | 3.1:+74765294 | None:intergenic |
| GGGTGACTTGGTCTTTATGG+AGG | 0.609776 | 3.1:+74765262 | None:intergenic |
| GGTGGAGGAGAATTTGGTCG+AGG | 0.611696 | 3.1:-74764786 | MS.gene06820:CDS |
| TAGGTTGAAATTTAGAGAGG+CGG | 0.613252 | 3.1:-74764482 | MS.gene06820:CDS |
| GCTTCAAACACGGTTAAAGG+AGG | 0.615142 | 3.1:+74764093 | None:intergenic |
| CACCAAATCTATACTCGCAT+AGG | 0.617087 | 3.1:+74764582 | None:intergenic |
| GTTTACAAAGAGGCATGGGG+TGG | 0.620636 | 3.1:-74764632 | MS.gene06820:CDS |
| TTTGGTTGTTGTTGTTGTGG+CGG | 0.626673 | 3.1:+74765181 | None:intergenic |
| ACCTATTAGATCCCTTCATG+TGG | 0.628686 | 3.1:+74764500 | None:intergenic |
| TAATAGGTTGAAATTTAGAG+AGG | 0.630490 | 3.1:-74764485 | MS.gene06820:CDS |
| ACATTCTTGACAGGAGAAGG+AGG | 0.645382 | 3.1:-74765233 | MS.gene06820:CDS |
| ACCTAGAACACGTAGATGCG+AGG | 0.650273 | 3.1:-74764763 | MS.gene06820:intron |
| AGCACGTAGAGGAGAAAGTG+GGG | 0.652859 | 3.1:-74764869 | MS.gene06820:CDS |
| TTTGTTTACAAAGAGGCATG+GGG | 0.659293 | 3.1:-74764635 | MS.gene06820:CDS |
| CCTGTCAAGAATGTTGTGGA+GGG | 0.660271 | 3.1:+74765242 | None:intergenic |
| ACAACAACCAAACGCCGCGG+CGG | 0.660743 | 3.1:-74765170 | MS.gene06820:CDS |
| TGCGGTGAAACAGCACGTAG+AGG | 0.663832 | 3.1:-74764880 | MS.gene06820:CDS |
| GTATACAAAAGAAAAGAAGG+AGG | 0.667757 | 3.1:-74763877 | MS.gene06820:CDS |
| CCTCTTCTTCTTCCTCTACG+CGG | 0.668606 | 3.1:-74765319 | MS.gene06820:CDS |
| ATTACCCACACAGGATGAGG+AGG | 0.669047 | 3.1:-74764452 | MS.gene06820:CDS |
| ACAACAACAACCAAACGCCG+CGG | 0.673009 | 3.1:-74765173 | MS.gene06820:CDS |
| GGTATTGCCATTACCCACAC+AGG | 0.681515 | 3.1:-74764461 | MS.gene06820:CDS |
| GTCCCATGACATACAAACAA+CGG | 0.689809 | 3.1:+74765127 | None:intergenic |
| GATGTGAGACTATCTACTCG+TGG | 0.713178 | 3.1:-74764807 | MS.gene06820:CDS |
| TTGAGTTCAGCTGAATGATG+CGG | 0.727884 | 3.1:-74764898 | MS.gene06820:intron |
| GTGAGACTATCTACTCGTGG+TGG | 0.731336 | 3.1:-74764804 | MS.gene06820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAATGATGATAATAAAA+TGG | + | chr3.1:74764120-74764139 | None:intergenic | 15.0% |
| !! | ATTAGAAAAACTTCAATTTC+TGG | - | chr3.1:74764877-74764896 | MS.gene06820:CDS | 20.0% |
| !! | ATTGTATACAAAAGAAAAGA+AGG | - | chr3.1:74765274-74765293 | MS.gene06820:CDS | 20.0% |
| !! | GATGATAATAAAATGGAAAT+GGG | + | chr3.1:74764113-74764132 | None:intergenic | 20.0% |
| !! | TGATGATAATAAAATGGAAA+TGG | + | chr3.1:74764114-74764133 | None:intergenic | 20.0% |
| ! | ATAAAATGTAGTGAGAAACA+TGG | + | chr3.1:74765184-74765203 | None:intergenic | 25.0% |
| ! | ATATTCACAATGAGAAGAAA+CGG | - | chr3.1:74764198-74764217 | MS.gene06820:intron | 25.0% |
| ! | ATGATTAATATCAACAACGA+AGG | + | chr3.1:74764788-74764807 | None:intergenic | 25.0% |
| !! | CTCAATTTTATGCTATCTTA+GGG | - | chr3.1:74765212-74765231 | MS.gene06820:CDS | 25.0% |
| !! | TAATAGGTTGAAATTTAGAG+AGG | - | chr3.1:74764669-74764688 | MS.gene06820:intron | 25.0% |
| !! | TCAATTTTATGCTATCTTAG+GGG | - | chr3.1:74765213-74765232 | MS.gene06820:CDS | 25.0% |
| !! | TGATTTCTATGATTTGCATT+AGG | - | chr3.1:74764492-74764511 | MS.gene06820:CDS | 25.0% |
| !!! | AAAAACTTCAATTTCTGGTT+TGG | - | chr3.1:74764882-74764901 | MS.gene06820:CDS | 25.0% |
| AAAAGAAAAGAAGGAGGTTA+TGG | - | chr3.1:74765283-74765302 | MS.gene06820:CDS | 30.0% | |
| AAGAAAGCTGAGAAAGATTA+AGG | - | chr3.1:74764609-74764628 | MS.gene06820:CDS | 30.0% | |
| AAGGAAAAAGAAACTGATCA+TGG | - | chr3.1:74764628-74764647 | MS.gene06820:CDS | 30.0% | |
| GTAGCTAGAAATATCATATC+AGG | - | chr3.1:74764811-74764830 | MS.gene06820:CDS | 30.0% | |
| GTATACAAAAGAAAAGAAGG+AGG | - | chr3.1:74765277-74765296 | MS.gene06820:CDS | 30.0% | |
| TATAACTAATCTACTAGCTG+TGG | - | chr3.1:74764233-74764252 | MS.gene06820:intron | 30.0% | |
| ! | AGGTTACTTTGTTTACAAAG+AGG | - | chr3.1:74764512-74764531 | MS.gene06820:CDS | 30.0% |
| ! | GCTCAATTTTATGCTATCTT+AGG | - | chr3.1:74765211-74765230 | MS.gene06820:CDS | 30.0% |
| !! | TTTGCTTTTGTTGTAAACCT+AGG | - | chr3.1:74764441-74764460 | MS.gene06820:CDS | 30.0% |
| !!! | ACTACTGTTTTAGCTATCTT+TGG | - | chr3.1:74765153-74765172 | MS.gene06820:CDS | 30.0% |
| AAACGGTGAAGCAGATAAAT+TGG | - | chr3.1:74765324-74765343 | MS.gene06820:CDS | 35.0% | |
| AGAAGAAGAACTTATTGAGG+AGG | - | chr3.1:74764756-74764775 | MS.gene06820:intron | 35.0% | |
| AGATAAATTGGAGCCTATAG+TGG | - | chr3.1:74765336-74765355 | MS.gene06820:CDS | 35.0% | |
| ATTGCTTCAAACACGGTTAA+AGG | + | chr3.1:74765067-74765086 | None:intergenic | 35.0% | |
| CTCATTATTCCCAAAGGAAA+CGG | - | chr3.1:74765307-74765326 | MS.gene06820:CDS | 35.0% | |
| GGAAGAAGAAGAACTTATTG+AGG | - | chr3.1:74764753-74764772 | MS.gene06820:intron | 35.0% | |
| TACCTATGCGAGTATAGATT+TGG | - | chr3.1:74764570-74764589 | MS.gene06820:CDS | 35.0% | |
| TATGGACTCATTATTCCCAA+AGG | - | chr3.1:74765301-74765320 | MS.gene06820:CDS | 35.0% | |
| TCCGTCAAATTAATCATCCA+GGG | - | chr3.1:74764062-74764081 | MS.gene06820:CDS | 35.0% | |
| TTCCGTCAAATTAATCATCC+AGG | - | chr3.1:74764061-74764080 | MS.gene06820:CDS | 35.0% | |
| ! | AAGTGTACTTCCTTTGTTTC+AGG | - | chr3.1:74765241-74765260 | MS.gene06820:CDS | 35.0% |
| ! | ACCCTGGATGATTAATTTGA+CGG | + | chr3.1:74764066-74764085 | None:intergenic | 35.0% |
| ! | ACTTTGTTTACAAAGAGGCA+TGG | - | chr3.1:74764517-74764536 | MS.gene06820:CDS | 35.0% |
| ! | AGTGTACTTCCTTTGTTTCA+GGG | - | chr3.1:74765242-74765261 | MS.gene06820:CDS | 35.0% |
| ! | ATTAATTTGACGGAAGAGAG+TGG | + | chr3.1:74764056-74764075 | None:intergenic | 35.0% |
| ! | CTTTGTTTACAAAGAGGCAT+GGG | - | chr3.1:74764518-74764537 | MS.gene06820:CDS | 35.0% |
| ! | GCTTTTCGAAATGAAGAATC+TGG | - | chr3.1:74765121-74765140 | MS.gene06820:CDS | 35.0% |
| ! | TAGGTTGAAATTTAGAGAGG+CGG | - | chr3.1:74764672-74764691 | MS.gene06820:intron | 35.0% |
| ! | TTTGTTTACAAAGAGGCATG+GGG | - | chr3.1:74764519-74764538 | MS.gene06820:CDS | 35.0% |
| !! | ATACCTGCATATTTTTACCC+TGG | + | chr3.1:74764082-74764101 | None:intergenic | 35.0% |
| !! | CTTTTGTTGTAAACCTAGGA+TGG | - | chr3.1:74764445-74764464 | MS.gene06820:CDS | 35.0% |
| AACTGAAATCTCCCCACAAA+AGG | - | chr3.1:74764729-74764748 | MS.gene06820:intron | 40.0% | |
| AAGGTTTGTGTGGAAGTTGA+AGG | + | chr3.1:74763802-74763821 | None:intergenic | 40.0% | |
| ACAACATTCTTGACAGGAGA+AGG | - | chr3.1:74763918-74763937 | MS.gene06820:intron | 40.0% | |
| ACCTATTAGATCCCTTCATG+TGG | + | chr3.1:74764657-74764676 | None:intergenic | 40.0% | |
| ACTGGAGTTAGTGCAATGTA+AGG | + | chr3.1:74764996-74765015 | None:intergenic | 40.0% | |
| AGCAATTGACCAGTTGGAAA+TGG | - | chr3.1:74765081-74765100 | MS.gene06820:CDS | 40.0% | |
| AGGATGGAAAAAGGTTTGTG+TGG | + | chr3.1:74763812-74763831 | None:intergenic | 40.0% | |
| AGGTTTGTGTGGAAGTTGAA+GGG | + | chr3.1:74763801-74763820 | None:intergenic | 40.0% | |
| ATTAACCTCCCCTGAAACAA+AGG | + | chr3.1:74765254-74765273 | None:intergenic | 40.0% | |
| CACCAAATCTATACTCGCAT+AGG | + | chr3.1:74764575-74764594 | None:intergenic | 40.0% | |
| CATCCAGGGTAAAAATATGC+AGG | - | chr3.1:74764076-74764095 | MS.gene06820:CDS | 40.0% | |
| CTCCGTTGTTTGTATGTCAT+GGG | - | chr3.1:74764025-74764044 | MS.gene06820:intron | 40.0% | |
| CTGGTCAATTGCTTCAAACA+CGG | + | chr3.1:74765074-74765093 | None:intergenic | 40.0% | |
| GAAGAACTTATTGAGGAGGT+TGG | - | chr3.1:74764760-74764779 | MS.gene06820:intron | 40.0% | |
| GTCCCATGACATACAAACAA+CGG | + | chr3.1:74764030-74764049 | None:intergenic | 40.0% | |
| GTTGTTTGTATGTCATGGGA+CGG | - | chr3.1:74764029-74764048 | MS.gene06820:intron | 40.0% | |
| TCTCCGTTGTTTGTATGTCA+TGG | - | chr3.1:74764024-74764043 | MS.gene06820:intron | 40.0% | |
| TTCTCCTGTCAAGAATGTTG+TGG | + | chr3.1:74763919-74763938 | None:intergenic | 40.0% | |
| TTGAGTTCAGCTGAATGATG+CGG | - | chr3.1:74764256-74764275 | MS.gene06820:intron | 40.0% | |
| ! | CTTCTTCTTCCTCCTTTTGT+GGG | + | chr3.1:74764744-74764763 | None:intergenic | 40.0% |
| ! | GTAAACCTAGGATGGATTCA+GGG | - | chr3.1:74764453-74764472 | MS.gene06820:CDS | 40.0% |
| ! | GTGTACTTCCTTTGTTTCAG+GGG | - | chr3.1:74765243-74765262 | MS.gene06820:CDS | 40.0% |
| ! | GTTTGAAGCAATTGACCAGT+TGG | - | chr3.1:74765075-74765094 | MS.gene06820:intron | 40.0% |
| ! | TCTTCTTCTTCCTCCTTTTG+TGG | + | chr3.1:74764745-74764764 | None:intergenic | 40.0% |
| ! | TGTAAACCTAGGATGGATTC+AGG | - | chr3.1:74764452-74764471 | MS.gene06820:CDS | 40.0% |
| ! | TTCTTCTTCCTCCTTTTGTG+GGG | + | chr3.1:74764743-74764762 | None:intergenic | 40.0% |
| ! | TTTGGTTGTTGTTGTTGTGG+CGG | + | chr3.1:74763976-74763995 | None:intergenic | 40.0% |
| !! | AGGCTGTTTTACAGGTTGTT+CGG | - | chr3.1:74765020-74765039 | MS.gene06820:intron | 40.0% |
| !! | GAGTATAGATTTGGTGTCCT+CGG | - | chr3.1:74764579-74764598 | MS.gene06820:CDS | 40.0% |
| AAGAGGAGGAGGATGGAAAA+AGG | + | chr3.1:74763821-74763840 | None:intergenic | 45.0% | |
| ACATTCTTGACAGGAGAAGG+AGG | - | chr3.1:74763921-74763940 | MS.gene06820:intron | 45.0% | |
| ATCTGCTTCACCGTTTCCTT+TGG | + | chr3.1:74765320-74765339 | None:intergenic | 45.0% | |
| CAGCTTTCTTTGAATGACCG+AGG | + | chr3.1:74764599-74764618 | None:intergenic | 45.0% | |
| CATGAGCAACCATTTCCAAC+TGG | + | chr3.1:74765093-74765112 | None:intergenic | 45.0% | |
| CCTGTCAAGAATGTTGTGGA+GGG | + | chr3.1:74763915-74763934 | None:intergenic | 45.0% | |
| GATGTGAGACTATCTACTCG+TGG | - | chr3.1:74764347-74764366 | MS.gene06820:intron | 45.0% | |
| GCCACATGAAGGGATCTAAT+AGG | - | chr3.1:74764653-74764672 | MS.gene06820:intron | 45.0% | |
| GCTTCAAACACGGTTAAAGG+AGG | + | chr3.1:74765064-74765083 | None:intergenic | 45.0% | |
| GTCTTTATGGAGGAAGGTAG+AGG | + | chr3.1:74763885-74763904 | None:intergenic | 45.0% | |
| TCCTGTCAAGAATGTTGTGG+AGG | + | chr3.1:74763916-74763935 | None:intergenic | 45.0% | |
| TCTGCTTCACCGTTTCCTTT+GGG | + | chr3.1:74765319-74765338 | None:intergenic | 45.0% | |
| TGAAATCTCCCCACAAAAGG+AGG | - | chr3.1:74764732-74764751 | MS.gene06820:intron | 45.0% | |
| TGTAGAGAGGGTTCTTTAGC+CGG | + | chr3.1:74765367-74765386 | None:intergenic | 45.0% | |
| TTTATGGAGGAAGGTAGAGG+AGG | + | chr3.1:74763882-74763901 | None:intergenic | 45.0% | |
| ! | GACTTGGTCTTTATGGAGGA+AGG | + | chr3.1:74763891-74763910 | None:intergenic | 45.0% |
| ! | GAGGAAGAGAGAGTACAGAA+AGG | + | chr3.1:74763863-74763882 | None:intergenic | 45.0% |
| ! | GCGTTTGGTTGTTGTTGTTG+TGG | + | chr3.1:74763979-74763998 | None:intergenic | 45.0% |
| ! | TACTTCCTTTGTTTCAGGGG+AGG | - | chr3.1:74765246-74765265 | MS.gene06820:CDS | 45.0% |
| ! | TTAGCCGGTTCAACCACTAT+AGG | + | chr3.1:74765352-74765371 | None:intergenic | 45.0% |
| ACAACAACAACCAAACGCCG+CGG | - | chr3.1:74763981-74764000 | MS.gene06820:intron | 50.0% | |
| ACAGCACGTAGAGGAGAAAG+TGG | - | chr3.1:74764283-74764302 | MS.gene06820:intron | 50.0% | |
| ACCTAGAACACGTAGATGCG+AGG | - | chr3.1:74764391-74764410 | MS.gene06820:intron | 50.0% | |
| ACCTCGCATCTACGTGTTCT+AGG | + | chr3.1:74764395-74764414 | None:intergenic | 50.0% | |
| AGACTATCTACTCGTGGTGG+AGG | - | chr3.1:74764353-74764372 | MS.gene06820:intron | 50.0% | |
| AGAGGAAGAAGAAGAGGAGG+AGG | + | chr3.1:74763832-74763851 | None:intergenic | 50.0% | |
| AGCACGTAGAGGAGAAAGTG+GGG | - | chr3.1:74764285-74764304 | MS.gene06820:intron | 50.0% | |
| ATTACCCACACAGGATGAGG+AGG | - | chr3.1:74764702-74764721 | MS.gene06820:intron | 50.0% | |
| CAAGACCCTGAATCCATCCT+AGG | + | chr3.1:74764461-74764480 | None:intergenic | 50.0% | |
| CAGCACGTAGAGGAGAAAGT+GGG | - | chr3.1:74764284-74764303 | MS.gene06820:intron | 50.0% | |
| CCCTCCACAACATTCTTGAC+AGG | - | chr3.1:74763912-74763931 | MS.gene06820:intron | 50.0% | |
| CCTCTTCTTCTTCCTCTACG+CGG | - | chr3.1:74763835-74763854 | MS.gene06820:CDS | 50.0% | |
| CGTAGAGGAAGAAGAAGAGG+AGG | + | chr3.1:74763835-74763854 | None:intergenic | 50.0% | |
| CTGTAAAACAGCCTCGCAAC+TGG | + | chr3.1:74765014-74765033 | None:intergenic | 50.0% | |
| GAAGAAGAAGAGGAGGAGGA+TGG | + | chr3.1:74763828-74763847 | None:intergenic | 50.0% | |
| GAATGTTGTGGAGGGTGACT+TGG | + | chr3.1:74763907-74763926 | None:intergenic | 50.0% | |
| GATCATGGTCGCCACATGAA+GGG | - | chr3.1:74764643-74764662 | MS.gene06820:CDS | 50.0% | |
| GGAGCCTATAGTGGTTGAAC+CGG | - | chr3.1:74765345-74765364 | MS.gene06820:CDS | 50.0% | |
| GGTATTGCCATTACCCACAC+AGG | - | chr3.1:74764693-74764712 | MS.gene06820:intron | 50.0% | |
| GTGAGACTATCTACTCGTGG+TGG | - | chr3.1:74764350-74764369 | MS.gene06820:intron | 50.0% | |
| TCATCCTCCTCATCCTGTGT+GGG | + | chr3.1:74764709-74764728 | None:intergenic | 50.0% | |
| TCCTCATCCTGTGTGGGTAA+TGG | + | chr3.1:74764703-74764722 | None:intergenic | 50.0% | |
| TGATCATGGTCGCCACATGA+AGG | - | chr3.1:74764642-74764661 | MS.gene06820:CDS | 50.0% | |
| TTCATCCTCCTCATCCTGTG+TGG | + | chr3.1:74764710-74764729 | None:intergenic | 50.0% | |
| TTGCACTAACTCCAGTTGCG+AGG | - | chr3.1:74765000-74765019 | MS.gene06820:intron | 50.0% | |
| ! | ACTCGTGGTGGAGGAGAATT+TGG | - | chr3.1:74764362-74764381 | MS.gene06820:intron | 50.0% |
| ! | GTTTACAAAGAGGCATGGGG+TGG | - | chr3.1:74764522-74764541 | MS.gene06820:CDS | 50.0% |
| !! | CAGTTGCGAGGCTGTTTTAC+AGG | - | chr3.1:74765012-74765031 | MS.gene06820:intron | 50.0% |
| !! | GGAGGGTGACTTGGTCTTTA+TGG | + | chr3.1:74763898-74763917 | None:intergenic | 50.0% |
| !! | GGGTGACTTGGTCTTTATGG+AGG | + | chr3.1:74763895-74763914 | None:intergenic | 50.0% |
| CCGCGTAGAGGAAGAAGAAG+AGG | + | chr3.1:74763838-74763857 | None:intergenic | 55.0% | |
| GCCATTACCCACACAGGATG+AGG | - | chr3.1:74764699-74764718 | MS.gene06820:intron | 55.0% | |
| GGTGGAGGAGAATTTGGTCG+AGG | - | chr3.1:74764368-74764387 | MS.gene06820:intron | 55.0% | |
| TGCGGTGAAACAGCACGTAG+AGG | - | chr3.1:74764274-74764293 | MS.gene06820:intron | 55.0% | |
| !! | TACAGAAAGGCACCGCGTAG+AGG | + | chr3.1:74763850-74763869 | None:intergenic | 55.0% |
| ACAACAACCAAACGCCGCGG+CGG | - | chr3.1:74763984-74764003 | MS.gene06820:intron | 60.0% | |
| ! | AAAGAGGCATGGGGTGGTGC+GGG | - | chr3.1:74764528-74764547 | MS.gene06820:CDS | 60.0% |
| ! | CAAAGAGGCATGGGGTGGTG+CGG | - | chr3.1:74764527-74764546 | MS.gene06820:CDS | 60.0% |
| ! | GGTGCGGGCTGAGGAACATG+CGG | - | chr3.1:74764543-74764562 | MS.gene06820:CDS | 65.0% |
| AAACGCCGCGGCGGCAGCAG+CGG | - | chr3.1:74763993-74764012 | MS.gene06820:intron | 75.0% | |
| ! | GCATGGGGTGGTGCGGGCTG+AGG | - | chr3.1:74764534-74764553 | MS.gene06820:CDS | 75.0% |
| ! | AACCGCCGCTGCTGCCGCCG+CGG | + | chr3.1:74764001-74764020 | None:intergenic | 80.0% |
| ! | GCTGCTGCCGCCGCGGCGTT+TGG | + | chr3.1:74763994-74764013 | None:intergenic | 80.0% |
| ! | CGCCGCGGCGGCAGCAGCGG+CGG | - | chr3.1:74763996-74764015 | MS.gene06820:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 74763783 | 74765393 | 74763783 | ID=MS.gene06820 |
| chr3.1 | mRNA | 74763783 | 74765393 | 74763783 | ID=MS.gene06820.t1;Parent=MS.gene06820 |
| chr3.1 | exon | 74765079 | 74765393 | 74765079 | ID=MS.gene06820.t1.exon1;Parent=MS.gene06820.t1 |
| chr3.1 | CDS | 74765079 | 74765393 | 74765079 | ID=cds.MS.gene06820.t1;Parent=MS.gene06820.t1 |
| chr3.1 | exon | 74764764 | 74764910 | 74764764 | ID=MS.gene06820.t1.exon2;Parent=MS.gene06820.t1 |
| chr3.1 | CDS | 74764764 | 74764910 | 74764764 | ID=cds.MS.gene06820.t1;Parent=MS.gene06820.t1 |
| chr3.1 | exon | 74764399 | 74764662 | 74764399 | ID=MS.gene06820.t1.exon3;Parent=MS.gene06820.t1 |
| chr3.1 | CDS | 74764399 | 74764662 | 74764399 | ID=cds.MS.gene06820.t1;Parent=MS.gene06820.t1 |
| chr3.1 | exon | 74764034 | 74764142 | 74764034 | ID=MS.gene06820.t1.exon4;Parent=MS.gene06820.t1 |
| chr3.1 | CDS | 74764034 | 74764142 | 74764034 | ID=cds.MS.gene06820.t1;Parent=MS.gene06820.t1 |
| chr3.1 | exon | 74763783 | 74763913 | 74763783 | ID=MS.gene06820.t1.exon5;Parent=MS.gene06820.t1 |
| chr3.1 | CDS | 74763783 | 74763913 | 74763783 | ID=cds.MS.gene06820.t1;Parent=MS.gene06820.t1 |
| Gene Sequence |
| Protein sequence |
