Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07140.t1 | KEH43285.1 | 98.2 | 553 | 10 | 0 | 1 | 553 | 1413 | 1965 | 5.60E-307 | 1062.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07140.t1 | F4IN58 | 70.2 | 553 | 165 | 0 | 1 | 553 | 1541 | 2093 | 1.7e-224 | 780.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07140.t1 | A0A072VYZ6 | 98.2 | 553 | 10 | 0 | 1 | 553 | 1413 | 1965 | 4.0e-307 | 1062.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene07140 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene07140 | 0.811477 | 6.87E-51 | -1.69E-46 |
| MS.gene049801 | MS.gene07140 | 0.816997 | 4.14E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene07140 | 0.835007 | 2.16E-56 | -1.69E-46 |
| MS.gene050105 | MS.gene07140 | 0.806793 | 6.92E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene07140 | 0.803342 | 3.65E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene07140 | 0.837559 | 4.84E-57 | -1.69E-46 |
| MS.gene051122 | MS.gene07140 | 0.819142 | 1.36E-52 | -1.69E-46 |
| MS.gene051209 | MS.gene07140 | 0.845994 | 2.87E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene07140 | 0.815079 | 1.11E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene07140 | 0.823802 | 1.14E-53 | -1.69E-46 |
| MS.gene052118 | MS.gene07140 | 0.81353 | 2.44E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene07140 | 0.807255 | 5.53E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene07140 | 0.877605 | 5.50E-69 | -1.69E-46 |
| MS.gene052675 | MS.gene07140 | 0.875557 | 2.81E-68 | -1.69E-46 |
| MS.gene052677 | MS.gene07140 | 0.881241 | 2.83E-70 | -1.69E-46 |
| MS.gene053486 | MS.gene07140 | 0.827891 | 1.22E-54 | -1.69E-46 |
| MS.gene053726 | MS.gene07140 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene07140 | 0.838386 | 2.97E-57 | -1.69E-46 |
| MS.gene054641 | MS.gene07140 | 0.850693 | 1.44E-60 | -1.69E-46 |
| MS.gene054892 | MS.gene07140 | 0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene07140 | 0.805877 | 1.08E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene07140 | 0.846271 | 2.41E-59 | -1.69E-46 |
| MS.gene055864 | MS.gene07140 | 0.81388 | 2.05E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene07140 | 0.816867 | 4.43E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene07140 | 0.823186 | 1.59E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene07140 | 0.81817 | 2.25E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene07140 | 0.822543 | 2.24E-53 | -1.69E-46 |
| MS.gene058081 | MS.gene07140 | 0.864516 | 1.15E-64 | -1.69E-46 |
| MS.gene058289 | MS.gene07140 | 0.817618 | 3.00E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene07140 | 0.840079 | 1.08E-57 | -1.69E-46 |
| MS.gene059439 | MS.gene07140 | 0.808444 | 3.09E-50 | -1.69E-46 |
| MS.gene059952 | MS.gene07140 | 0.820745 | 5.83E-53 | -1.69E-46 |
| MS.gene060435 | MS.gene07140 | 0.834617 | 2.70E-56 | -1.69E-46 |
| MS.gene060520 | MS.gene07140 | 0.809883 | 1.52E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene07140 | 0.828995 | 6.59E-55 | -1.69E-46 |
| MS.gene060785 | MS.gene07140 | 0.82475 | 6.81E-54 | -1.69E-46 |
| MS.gene060850 | MS.gene07140 | 0.867155 | 1.68E-65 | -1.69E-46 |
| MS.gene060851 | MS.gene07140 | 0.865616 | 5.19E-65 | -1.69E-46 |
| MS.gene060852 | MS.gene07140 | 0.865777 | 4.62E-65 | -1.69E-46 |
| MS.gene060932 | MS.gene07140 | 0.828055 | 1.11E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene07140 | 0.834669 | 2.62E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene07140 | 0.817832 | 2.69E-52 | -1.69E-46 |
| MS.gene06121 | MS.gene07140 | 0.842769 | 2.11E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07140.t1 | MTR_1g089760 | 98.192 | 553 | 10 | 0 | 1 | 553 | 1413 | 1965 | 0.0 | 1118 |
| MS.gene07140.t1 | MTR_7g113930 | 62.477 | 549 | 200 | 3 | 10 | 553 | 1554 | 2101 | 0.0 | 704 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07140.t1 | AT2G48060 | 70.163 | 553 | 165 | 0 | 1 | 553 | 1452 | 2004 | 0.0 | 830 |
| MS.gene07140.t1 | AT2G48060 | 70.163 | 553 | 165 | 0 | 1 | 553 | 1564 | 2116 | 0.0 | 829 |
| MS.gene07140.t1 | AT2G48060 | 70.163 | 553 | 165 | 0 | 1 | 553 | 1541 | 2093 | 0.0 | 829 |
Find 0 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATAAATTAAATTTGG+GGG | + | 10949:7168-7187 | MS.gene07140:intron | 10.0% |
| !! | CATTTAATAAATTAAATTTG+GGG | + | 10949:7167-7186 | MS.gene07140:intron | 10.0% |
| !! | AGATGTAATAATAAAATTCA+TGG | + | 10949:7463-7482 | MS.gene07140:intron | 15.0% |
| !! | TTGAATAAATAAGAAAGAAT+AGG | + | 10949:6570-6589 | MS.gene07140:intron | 15.0% |
| !!! | AAAATAAAGACATATTCTTT+TGG | - | 10949:6301-6320 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTCAAATAGAA+GGG | + | 10949:7579-7598 | MS.gene07140:intron | 15.0% |
| !! | AAAGAAAAAATTAAAAGAGG+TGG | - | 10949:7292-7311 | None:intergenic | 20.0% |
| !! | AATAAATAGACAAGAAAAAG+AGG | - | 10949:5539-5558 | None:intergenic | 20.0% |
| !! | AATTAGTATACATAGCAAAA+AGG | - | 10949:6696-6715 | None:intergenic | 20.0% |
| !! | CGCAAGAAATTATAAAAAAA+AGG | - | 10949:7622-7641 | None:intergenic | 20.0% |
| !! | TATTGTTAGGATAGAAAATA+AGG | - | 10949:6767-6786 | None:intergenic | 20.0% |
| !! | TGTAATAATAAAATTCATGG+CGG | + | 10949:7466-7485 | MS.gene07140:intron | 20.0% |
| !!! | AAATGGTTCAGTTTATTTTA+TGG | + | 10949:7553-7572 | MS.gene07140:intron | 20.0% |
| !!! | AGAATATGTCTTTATTTTGA+TGG | + | 10949:6303-6322 | MS.gene07140:CDS | 20.0% |
| !!! | AGTCATTTTCTCAATTTTAT+TGG | + | 10949:6995-7014 | MS.gene07140:intron | 20.0% |
| !!! | ATTATATAGAACCTTTGAAA+TGG | + | 10949:7536-7555 | MS.gene07140:intron | 20.0% |
| !!! | CTTTTTGTTTTTCAAATAGA+AGG | + | 10949:7578-7597 | MS.gene07140:intron | 20.0% |
| ! | AATAAACTGAACCATTTCAA+AGG | - | 10949:7550-7569 | None:intergenic | 25.0% |
| ! | AGGCAAAAATCTTAAAACAA+GGG | - | 10949:7224-7243 | None:intergenic | 25.0% |
| ! | AGTAAAACACTATTGTTGAA+GGG | - | 10949:6622-6641 | None:intergenic | 25.0% |
| ! | ATAGACACTTGAACAAAATA+AGG | - | 10949:5785-5804 | None:intergenic | 25.0% |
| ! | GGGAAAGAAAAAATTAAAAG+AGG | - | 10949:7295-7314 | None:intergenic | 25.0% |
| ! | TAGAAGAAGTAAATTCAGTT+AGG | - | 10949:7770-7789 | None:intergenic | 25.0% |
| ! | TAGCAAAAGAGCAAATATTT+GGG | - | 10949:5913-5932 | None:intergenic | 25.0% |
| ! | TCTCTATTTGTATGCTTTAT+GGG | + | 10949:5328-5347 | MS.gene07140:CDS | 25.0% |
| ! | TTAGTTTAATAGTACAACTG+TGG | - | 10949:6395-6414 | None:intergenic | 25.0% |
| ! | TTCAATACATGAATACTACA+AGG | - | 10949:6555-6574 | None:intergenic | 25.0% |
| ! | TTTATAATTTCTTGCGTAAC+TGG | + | 10949:7626-7645 | MS.gene07140:intron | 25.0% |
| !! | AACTTTTATTAGCACGATTA+GGG | - | 10949:7361-7380 | None:intergenic | 25.0% |
| !! | ATTCCTCTTAAATTTGAAGT+CGG | - | 10949:5615-5634 | None:intergenic | 25.0% |
| !! | TTCTCTTTTCAGCTAAATTT+TGG | - | 10949:6447-6466 | None:intergenic | 25.0% |
| !!! | CTAAATTTTGGTTTCTAACT+TGG | - | 10949:6435-6454 | None:intergenic | 25.0% |
| !!! | TTATTTTGTTCAAGTGTCTA+TGG | + | 10949:5784-5803 | MS.gene07140:CDS | 25.0% |
| !!! | TTTTGTTTTTTATGACAGAC+TGG | - | 10949:6240-6259 | None:intergenic | 25.0% |
| AAAAGTTGAATTTCAGACCA+AGG | + | 10949:7374-7393 | MS.gene07140:intron | 30.0% | |
| AAATGAACATACAAACACAG+AGG | + | 10949:5076-5095 | MS.gene07140:CDS | 30.0% | |
| AACTGCTTTAGCAAGAAATA+TGG | - | 10949:7967-7986 | None:intergenic | 30.0% | |
| AAGTACAATCAAGAAGAAGA+TGG | - | 10949:7799-7818 | None:intergenic | 30.0% | |
| ATAAGAAAGAATAGGAGAGA+AGG | + | 10949:6578-6597 | MS.gene07140:intron | 30.0% | |
| ATTACAGAAAGAATACGGTA+AGG | - | 10949:6133-6152 | None:intergenic | 30.0% | |
| ATTCAGTTACAGAGTATGAT+TGG | + | 10949:7895-7914 | MS.gene07140:CDS | 30.0% | |
| CACCAATTACAGAAAGAATA+CGG | - | 10949:6138-6157 | None:intergenic | 30.0% | |
| CATCGTAATTCATAAAGGAA+TGG | - | 10949:8116-8135 | None:intergenic | 30.0% | |
| CGGAATTATTACAGTCTAAT+TGG | + | 10949:7120-7139 | MS.gene07140:intron | 30.0% | |
| CTAGCAAAAGAGCAAATATT+TGG | - | 10949:5914-5933 | None:intergenic | 30.0% | |
| CTCTCTATTTGTATGCTTTA+TGG | + | 10949:5327-5346 | MS.gene07140:CDS | 30.0% | |
| CTGTAATAATTCCGAATAGA+AGG | - | 10949:7114-7133 | None:intergenic | 30.0% | |
| GAAATCTCTGCATATGTATT+TGG | + | 10949:5127-5146 | MS.gene07140:CDS | 30.0% | |
| GAAGGATCTTTCGTTATATA+TGG | + | 10949:5207-5226 | MS.gene07140:CDS | 30.0% | |
| GAGGCAAAAATCTTAAAACA+AGG | - | 10949:7225-7244 | None:intergenic | 30.0% | |
| GAGTAAAACACTATTGTTGA+AGG | - | 10949:6623-6642 | None:intergenic | 30.0% | |
| GCAAAAATCTTAAAACAAGG+GGG | - | 10949:7222-7241 | None:intergenic | 30.0% | |
| GCATTTATTTAATCAGCTAG+AGG | + | 10949:7726-7745 | MS.gene07140:intron | 30.0% | |
| GGCAAAAATCTTAAAACAAG+GGG | - | 10949:7223-7242 | None:intergenic | 30.0% | |
| GTAACATACTACATCATTGT+TGG | - | 10949:5246-5265 | None:intergenic | 30.0% | |
| TAAACGACACTTATGATTGA+AGG | + | 10949:6916-6935 | MS.gene07140:intron | 30.0% | |
| TAATAATTCCGAATAGAAGG+TGG | - | 10949:7111-7130 | None:intergenic | 30.0% | |
| TACCGTATTCTTTCTGTAAT+TGG | + | 10949:6133-6152 | MS.gene07140:CDS | 30.0% | |
| TCTGACAGTATTCTTATTAC+CGG | + | 10949:6832-6851 | MS.gene07140:intron | 30.0% | |
| TGAATTTACTTCTTCTACTC+AGG | + | 10949:7773-7792 | MS.gene07140:intron | 30.0% | |
| TGACAATTAGAGAAGTTAGT+TGG | - | 10949:6731-6750 | None:intergenic | 30.0% | |
| TTACAGAAAGAATACGGTAA+GGG | - | 10949:6132-6151 | None:intergenic | 30.0% | |
| TTCAATGTAATCACATGTGT+CGG | - | 10949:6972-6991 | None:intergenic | 30.0% | |
| ! | CAACTTTTATTAGCACGATT+AGG | - | 10949:7362-7381 | None:intergenic | 30.0% |
| ! | GCTGAAAAGAGAAAACATTT+TGG | + | 10949:6454-6473 | MS.gene07140:intron | 30.0% |
| ! | TATGCTTTATGGGTTAATAC+AGG | + | 10949:5338-5357 | MS.gene07140:CDS | 30.0% |
| ! | TATTTGCTCTTTTGCTAGTA+AGG | + | 10949:5916-5935 | MS.gene07140:CDS | 30.0% |
| ! | TCTAATTGGCTTATAGTCTT+GGG | + | 10949:7134-7153 | MS.gene07140:intron | 30.0% |
| !! | AGACATATTCTTTTGGAAAC+TGG | - | 10949:6294-6313 | None:intergenic | 30.0% |
| !!! | TTTTATTGGTGTTAACGTGT+CGG | + | 10949:7009-7028 | MS.gene07140:intron | 30.0% |
| AAATCTTAAAACAAGGGGGA+AGG | - | 10949:7218-7237 | None:intergenic | 35.0% | |
| AATCTTAAAACAAGGGGGAA+GGG | - | 10949:7217-7236 | None:intergenic | 35.0% | |
| ACTCCATCAATACAATGTGA+TGG | + | 10949:7321-7340 | MS.gene07140:intron | 35.0% | |
| ATAACCCAGAAGATGTAACT+TGG | - | 10949:5365-5384 | None:intergenic | 35.0% | |
| ATAATCCCACTAGTTATAGC+TGG | + | 10949:5651-5670 | MS.gene07140:CDS | 35.0% | |
| ATAGCAAAAAGGAAGATGCA+TGG | - | 10949:6685-6704 | None:intergenic | 35.0% | |
| ATAGCTGAAAATGAGCAAGA+GGG | - | 10949:6876-6895 | None:intergenic | 35.0% | |
| ATCCCATCACATTGTATTGA+TGG | - | 10949:7327-7346 | None:intergenic | 35.0% | |
| ATTCTTTCTGTAATTGGTGG+AGG | + | 10949:6139-6158 | MS.gene07140:CDS | 35.0% | |
| CGTATTCTTTCTGTAATTGG+TGG | + | 10949:6136-6155 | MS.gene07140:CDS | 35.0% | |
| CGTTATGGAACTTTGAATGA+GGG | - | 10949:5564-5583 | None:intergenic | 35.0% | |
| CTCCATCAATACAATGTGAT+GGG | + | 10949:7322-7341 | MS.gene07140:intron | 35.0% | |
| CTCTTTGATTAATGCAGTGT+TGG | + | 10949:7677-7696 | MS.gene07140:intron | 35.0% | |
| CTTTAGCAAGAAATATGGCA+CGG | - | 10949:7962-7981 | None:intergenic | 35.0% | |
| GACACTTGAACAAAATAAGG+AGG | - | 10949:5782-5801 | None:intergenic | 35.0% | |
| GCTGAAGAACAATCAGTTAA+AGG | - | 10949:6019-6038 | None:intergenic | 35.0% | |
| GTACGCATCGTAATTCATAA+AGG | - | 10949:8121-8140 | None:intergenic | 35.0% | |
| GTTTCACGAATCAACTACTT+AGG | + | 10949:8068-8087 | MS.gene07140:CDS | 35.0% | |
| TAACCCAGAAGATGTAACTT+GGG | - | 10949:5364-5383 | None:intergenic | 35.0% | |
| TAATTTCAACCTTGAGTGCA+AGG | - | 10949:6808-6827 | None:intergenic | 35.0% | |
| TACAGAGTATGATTGGCAAT+TGG | + | 10949:7902-7921 | MS.gene07140:CDS | 35.0% | |
| TAGCAAAAAGGAAGATGCAT+GGG | - | 10949:6684-6703 | None:intergenic | 35.0% | |
| TATAGCTGAAAATGAGCAAG+AGG | - | 10949:6877-6896 | None:intergenic | 35.0% | |
| TATCCACAATGATAAGTGCA+AGG | + | 10949:5880-5899 | MS.gene07140:CDS | 35.0% | |
| TCTTGTTAGGAATGCCATAT+CGG | - | 10949:8016-8035 | None:intergenic | 35.0% | |
| TGGCATGCTTAAGAAACATT+TGG | + | 10949:7646-7665 | MS.gene07140:intron | 35.0% | |
| TTGCACTCAAGGTTGAAATT+AGG | + | 10949:6807-6826 | MS.gene07140:intron | 35.0% | |
| TTGCTATCAATGGTGTATCT+TGG | + | 10949:5302-5321 | MS.gene07140:CDS | 35.0% | |
| TTTCCTTGCACTTATCATTG+TGG | - | 10949:5886-5905 | None:intergenic | 35.0% | |
| ! | ATCAATACAATGTGATGGGA+TGG | + | 10949:7326-7345 | MS.gene07140:intron | 35.0% |
| ! | GTCTAATTGGCTTATAGTCT+TGG | + | 10949:7133-7152 | MS.gene07140:intron | 35.0% |
| ! | TAGTGGGATTATCTTTTGTG+TGG | - | 10949:5643-5662 | None:intergenic | 35.0% |
| ! | TATCCTTTTGTTCTTTCGAC+AGG | + | 10949:6351-6370 | MS.gene07140:intron | 35.0% |
| ! | TTGTATTGATGGAGTTCTAG+AGG | - | 10949:7316-7335 | None:intergenic | 35.0% |
| !! | CTACCGACTTCAAATTTAAG+AGG | + | 10949:5609-5628 | MS.gene07140:CDS | 35.0% |
| !! | GAACTTCAGTTTGCTATCAA+TGG | + | 10949:5292-5311 | MS.gene07140:CDS | 35.0% |
| !! | TGTATTGATGGAGTTCTAGA+GGG | - | 10949:7315-7334 | None:intergenic | 35.0% |
| AAATCATCATCCAGCACTGT+GGG | + | 10949:5432-5451 | MS.gene07140:CDS | 40.0% | |
| AAATGAGCAAGAGGGTGAAA+AGG | - | 10949:6868-6887 | None:intergenic | 40.0% | |
| AAGAGGTGGTGTAGATTCAA+TGG | - | 10949:7278-7297 | None:intergenic | 40.0% | |
| AAGCTGCTTGAGAAAGAGAA+TGG | + | 10949:7082-7101 | MS.gene07140:intron | 40.0% | |
| AATTACGATGCGTACTTGAC+TGG | + | 10949:8126-8145 | MS.gene07140:CDS | 40.0% | |
| AGAACAATCAGTTAAAGGCG+AGG | - | 10949:6014-6033 | None:intergenic | 40.0% | |
| AGACATCCATTCACCATCTT+TGG | - | 10949:5588-5607 | None:intergenic | 40.0% | |
| AGAGGTGGTGTAGATTCAAT+GGG | - | 10949:7277-7296 | None:intergenic | 40.0% | |
| AGCAAAAAGGAAGATGCATG+GGG | - | 10949:6683-6702 | None:intergenic | 40.0% | |
| AGCTGCTTGAGAAAGAGAAT+GGG | + | 10949:7083-7102 | MS.gene07140:intron | 40.0% | |
| ATAGAATATCACTTTCCCCG+TGG | - | 10949:7850-7869 | None:intergenic | 40.0% | |
| ATTAGGCTTTCCAACACACA+AGG | + | 10949:5484-5503 | MS.gene07140:CDS | 40.0% | |
| CAGATCTGCACAAAATACGT+AGG | - | 10949:6188-6207 | None:intergenic | 40.0% | |
| CCCATCAAGTTCTTCAGTAA+CGG | - | 10949:6522-6541 | None:intergenic | 40.0% | |
| CCGTTACTGAAGAACTTGAT+GGG | + | 10949:6519-6538 | MS.gene07140:intron | 40.0% | |
| CGATACAATGTGCTCTTGTT+AGG | - | 10949:8029-8048 | None:intergenic | 40.0% | |
| CGTTACTGAAGAACTTGATG+GGG | + | 10949:6520-6539 | MS.gene07140:intron | 40.0% | |
| CTGAAATGGTTCTTGCACAA+CGG | + | 10949:7430-7449 | MS.gene07140:intron | 40.0% | |
| CTGATTGTTCTTCAGCAGAA+TGG | + | 10949:6023-6042 | MS.gene07140:CDS | 40.0% | |
| CTTGCTAAAGCAGTTTCTCT+AGG | + | 10949:7972-7991 | MS.gene07140:CDS | 40.0% | |
| GAAAGCCTAATTCTCTCAAC+AGG | - | 10949:5475-5494 | None:intergenic | 40.0% | |
| GAATTCCAGTGTTGTCTTAG+CGG | + | 10949:5970-5989 | MS.gene07140:CDS | 40.0% | |
| GACATCCATTCACCATCTTT+GGG | - | 10949:5587-5606 | None:intergenic | 40.0% | |
| GCGTTATGGAACTTTGAATG+AGG | - | 10949:5565-5584 | None:intergenic | 40.0% | |
| GCTAACTCAGTTGACTAACA+TGG | + | 10949:5694-5713 | MS.gene07140:CDS | 40.0% | |
| GGATCAAGTATATGACGAGA+TGG | + | 10949:5097-5116 | MS.gene07140:CDS | 40.0% | |
| GTTGAATTTCAGACCAAGGT+TGG | + | 10949:7378-7397 | MS.gene07140:intron | 40.0% | |
| GTTGACTAACATGGTGAAAC+TGG | + | 10949:5703-5722 | MS.gene07140:CDS | 40.0% | |
| TACTGGAAATCACTCACACA+GGG | + | 10949:5746-5765 | MS.gene07140:CDS | 40.0% | |
| TATGACAGACTGGTAGAAGA+TGG | - | 10949:6230-6249 | None:intergenic | 40.0% | |
| ! | AATTTCAGACCAAGGTTGGT+GGG | + | 10949:7382-7401 | MS.gene07140:intron | 40.0% |
| ! | CTTTTGGCATTGTCAGTTCA+TGG | + | 10949:7495-7514 | MS.gene07140:intron | 40.0% |
| ! | GCTTTGTTCTTGTGTTCTTG+TGG | + | 10949:5270-5289 | MS.gene07140:CDS | 40.0% |
| ! | TAATGCAGTGTTGGAATGAC+TGG | + | 10949:7686-7705 | MS.gene07140:intron | 40.0% |
| !! | CTAGAGGTGTCATGTCATAT+AGG | + | 10949:7742-7761 | MS.gene07140:intron | 40.0% |
| !! | GCAGGTTTTGTAGAAGAAGT+GGG | + | 10949:6103-6122 | MS.gene07140:CDS | 40.0% |
| !! | TGAGAAGCTCTTTTAGGTAC+TGG | + | 10949:5729-5748 | MS.gene07140:CDS | 40.0% |
| !! | TGCAGGTTTTGTAGAAGAAG+TGG | + | 10949:6102-6121 | MS.gene07140:CDS | 40.0% |
| !! | TGGTAGTGAGAAGCTCTTTT+AGG | + | 10949:5723-5742 | MS.gene07140:CDS | 40.0% |
| !! | TGTAGAAAGGGAAGGGTATT+TGG | - | 10949:7247-7266 | None:intergenic | 40.0% |
| ACAGGCCTGGAAAAGTTTGT+TGG | + | 10949:6369-6388 | MS.gene07140:intron | 45.0% | |
| AGGCCCAAGTTACATCTTCT+GGG | + | 10949:5358-5377 | MS.gene07140:CDS | 45.0% | |
| AGGCCTGTCGAAAGAACAAA+AGG | - | 10949:6357-6376 | None:intergenic | 45.0% | |
| AGTGCAAGGTTGAATTCGAG+GGG | - | 10949:6794-6813 | None:intergenic | 45.0% | |
| AGTTCCATAACGCCCAAAGA+TGG | + | 10949:5572-5591 | MS.gene07140:CDS | 45.0% | |
| ATACCTCTGCTCATTTGCCA+CGG | + | 10949:7830-7849 | MS.gene07140:CDS | 45.0% | |
| ATTCCAGACTCAATCCTCTC+TGG | - | 10949:5842-5861 | None:intergenic | 45.0% | |
| ATTGTGCATGTTCCCCCTTT+GGG | + | 10949:6484-6503 | MS.gene07140:intron | 45.0% | |
| CAAATCATCATCCAGCACTG+TGG | + | 10949:5431-5450 | MS.gene07140:CDS | 45.0% | |
| CAGGCTGTACAAATCCGATA+TGG | + | 10949:7999-8018 | MS.gene07140:CDS | 45.0% | |
| CATCATTGTTGGAACGCATC+TGG | - | 10949:5235-5254 | None:intergenic | 45.0% | |
| CATCTCTCACCATGTATGAC+TGG | + | 10949:8162-8181 | MS.gene07140:CDS | 45.0% | |
| CCTAATTCTCTCAACAGGCT+AGG | - | 10949:5470-5489 | None:intergenic | 45.0% | |
| CCTAGCCTGTTGAGAGAATT+AGG | + | 10949:5467-5486 | MS.gene07140:CDS | 45.0% | |
| CGAATTCAACCTTGCACTCA+AGG | + | 10949:6796-6815 | MS.gene07140:intron | 45.0% | |
| CGTTGTGCAAGAACCATTTC+AGG | - | 10949:7432-7451 | None:intergenic | 45.0% | |
| CTGCTTGAGAAAGAGAATGG+GGG | + | 10949:7085-7104 | MS.gene07140:intron | 45.0% | |
| CTTCAAGCTGGTACACTTCA+AGG | - | 10949:6270-6289 | None:intergenic | 45.0% | |
| GAATTTCAGACCAAGGTTGG+TGG | + | 10949:7381-7400 | MS.gene07140:intron | 45.0% | |
| GAGGTGGTGTAGATTCAATG+GGG | - | 10949:7276-7295 | None:intergenic | 45.0% | |
| GAGTGCAAGGTTGAATTCGA+GGG | - | 10949:6795-6814 | None:intergenic | 45.0% | |
| GCCGTTACTGAAGAACTTGA+TGG | + | 10949:6518-6537 | MS.gene07140:intron | 45.0% | |
| GCTGCTTGAGAAAGAGAATG+GGG | + | 10949:7084-7103 | MS.gene07140:intron | 45.0% | |
| GTACTGGAAATCACTCACAC+AGG | + | 10949:5745-5764 | MS.gene07140:CDS | 45.0% | |
| GTTCATGGCATTCGTTATGC+TGG | + | 10949:7510-7529 | MS.gene07140:intron | 45.0% | |
| TAACGCCCAAAGATGGTGAA+TGG | + | 10949:5579-5598 | MS.gene07140:CDS | 45.0% | |
| TATTGTGCATGTTCCCCCTT+TGG | + | 10949:6483-6502 | MS.gene07140:intron | 45.0% | |
| TCTCGCCAGCTATAACTAGT+GGG | - | 10949:5659-5678 | None:intergenic | 45.0% | |
| TGAGTGCAAGGTTGAATTCG+AGG | - | 10949:6796-6815 | None:intergenic | 45.0% | |
| TTCACCATCTTTGGGCGTTA+TGG | - | 10949:5579-5598 | None:intergenic | 45.0% | |
| ! | CACAGTGCTGGATGATGATT+TGG | - | 10949:5433-5452 | None:intergenic | 45.0% |
| ! | CACCATGTATGACTGGCTAA+AGG | + | 10949:8169-8188 | MS.gene07140:CDS | 45.0% |
| ! | TGTGGCCAACAAACTTTTCC+AGG | - | 10949:6377-6396 | None:intergenic | 45.0% |
| ! | TTATGATTGAAGGTGCGTCC+CGG | + | 10949:6926-6945 | MS.gene07140:intron | 45.0% |
| ! | TTCATGGCGGCTTAAGCTTT+TGG | + | 10949:7479-7498 | MS.gene07140:intron | 45.0% |
| ! | TTGGCTTATAGTCTTGGGCA+AGG | + | 10949:7139-7158 | MS.gene07140:intron | 45.0% |
| ! | TTTTGTTCTTTCGACAGGCC+TGG | + | 10949:6356-6375 | MS.gene07140:intron | 45.0% |
| !! | AATGGGGAGGTGTTGTAGAA+AGG | - | 10949:7260-7279 | None:intergenic | 45.0% |
| !! | AGAAAGGGAAGGGTATTTGG+AGG | - | 10949:7244-7263 | None:intergenic | 45.0% |
| !! | AGCAGTTTCTCTAGGATTGC+AGG | + | 10949:7980-7999 | MS.gene07140:CDS | 45.0% |
| !! | ATGGGGAGGTGTTGTAGAAA+GGG | - | 10949:7259-7278 | None:intergenic | 45.0% |
| !! | CTGAGCTTTGAGGATTTCCT+TGG | - | 10949:6080-6099 | None:intergenic | 45.0% |
| !! | GAGGTGTTGTAGAAAGGGAA+GGG | - | 10949:7254-7273 | None:intergenic | 45.0% |
| !! | TGTCTATGGATGTCGACTTC+TGG | + | 10949:5798-5817 | MS.gene07140:CDS | 45.0% |
| !! | TTGGAAACTGGTCTTCAAGC+TGG | - | 10949:6282-6301 | None:intergenic | 45.0% |
| !! | ATCATTTAATAAATTAAATT+TGG | + | 10949:7165-7184 | MS.gene07140:intron | 5.0% |
| !! | TCATTTAATAAATTAAATTT+GGG | + | 10949:7166-7185 | MS.gene07140:intron | 5.0% |
| !!! | AAATTTAATTTATTAAATGA+TGG | - | 10949:7166-7185 | None:intergenic | 5.0% |
| !!! | AATTTAATTTATTAAATGAT+GGG | - | 10949:7165-7184 | None:intergenic | 5.0% |
| AAAGGAAGATGCATGGGGAG+TGG | - | 10949:6678-6697 | None:intergenic | 50.0% | |
| AAGGAAGATGCATGGGGAGT+GGG | - | 10949:6677-6696 | None:intergenic | 50.0% | |
| AATGGGGGCCACCTTCTATT+CGG | + | 10949:7100-7119 | MS.gene07140:intron | 50.0% | |
| AGGATGGGATTCAACCAGAG+AGG | + | 10949:5825-5844 | MS.gene07140:CDS | 50.0% | |
| ATTAGCACGATTAGGGCGCA+AGG | - | 10949:7354-7373 | None:intergenic | 50.0% | |
| CAACCAGAGAGGATTGAGTC+TGG | + | 10949:5836-5855 | MS.gene07140:CDS | 50.0% | |
| CAATACTCAACCCACAGTGC+TGG | - | 10949:5445-5464 | None:intergenic | 50.0% | |
| CAGGCCCAAGTTACATCTTC+TGG | + | 10949:5357-5376 | MS.gene07140:CDS | 50.0% | |
| CTCGTGCTTCATGCCTGAAA+TGG | + | 10949:7416-7435 | MS.gene07140:intron | 50.0% | |
| CTCTCGCCAGCTATAACTAG+TGG | - | 10949:5660-5679 | None:intergenic | 50.0% | |
| CTGCAAGTCTGCAGTTAGGA+AGG | + | 10949:5189-5208 | MS.gene07140:CDS | 50.0% | |
| CTTAAAACAAGGGGGAAGGG+TGG | - | 10949:7214-7233 | None:intergenic | 50.0% | |
| CTTCCTAACTGCAGACTTGC+AGG | - | 10949:5191-5210 | None:intergenic | 50.0% | |
| GAAGACCGCTAAGACAACAC+TGG | - | 10949:5978-5997 | None:intergenic | 50.0% | |
| GAAGACGTGACCTTGTGTGT+TGG | - | 10949:5497-5516 | None:intergenic | 50.0% | |
| GATCCTGCAAGTCTGCAGTT+AGG | + | 10949:5185-5204 | MS.gene07140:CDS | 50.0% | |
| GTGCAAGGTTGAATTCGAGG+GGG | - | 10949:6793-6812 | None:intergenic | 50.0% | |
| GTGGTGTAGATTCAATGGGG+AGG | - | 10949:7273-7292 | None:intergenic | 50.0% | |
| GTTGAAGGGTCAACCTTCAG+AGG | - | 10949:6608-6627 | None:intergenic | 50.0% | |
| TACCTCTGCTCATTTGCCAC+GGG | + | 10949:7831-7850 | MS.gene07140:CDS | 50.0% | |
| TAGCTGGCGAGAGAAAGCAA+TGG | + | 10949:5667-5686 | MS.gene07140:CDS | 50.0% | |
| TCTGGTTGAATCCCATCCTC+TGG | - | 10949:5824-5843 | None:intergenic | 50.0% | |
| TGAGCAAGAGGGTGAAAAGG+AGG | - | 10949:6865-6884 | None:intergenic | 50.0% | |
| TGAGCAGCATGTTGTCGAGA+TGG | - | 10949:7930-7949 | None:intergenic | 50.0% | |
| TTCGAGGGGGTGGTATTGTT+AGG | - | 10949:6780-6799 | None:intergenic | 50.0% | |
| ! | GCAGTGTTGGAATGACTGGA+CGG | + | 10949:7690-7709 | MS.gene07140:intron | 50.0% |
| !! | CAAAGAGAGCATCCCAAAGG+GGG | - | 10949:6499-6518 | None:intergenic | 50.0% |
| !! | GCAAAGAGAGCATCCCAAAG+GGG | - | 10949:6500-6519 | None:intergenic | 50.0% |
| !! | GGAGGTGTTGTAGAAAGGGA+AGG | - | 10949:7255-7274 | None:intergenic | 50.0% |
| !! | GGCAAAGAGAGCATCCCAAA+GGG | - | 10949:6501-6520 | None:intergenic | 50.0% |
| AACCTGCACGCTGAGCTTTG+AGG | - | 10949:6090-6109 | None:intergenic | 55.0% | |
| ACCTCTGCTCATTTGCCACG+GGG | + | 10949:7832-7851 | MS.gene07140:CDS | 55.0% | |
| AGGAAGATGCATGGGGAGTG+GGG | - | 10949:6676-6695 | None:intergenic | 55.0% | |
| ATCCTCAAAGCTCAGCGTGC+AGG | + | 10949:6085-6104 | MS.gene07140:CDS | 55.0% | |
| CAAGGTTGAATTCGAGGGGG+TGG | - | 10949:6790-6809 | None:intergenic | 55.0% | |
| GAGAGAAGGCTCTCCTCTGA+AGG | + | 10949:6592-6611 | MS.gene07140:intron | 55.0% | |
| GTGAACATGCCCACCAACCT+TGG | - | 10949:7394-7413 | None:intergenic | 55.0% | |
| TCCAGCAGCTGATGTTGCCA+AGG | + | 10949:6060-6079 | MS.gene07140:CDS | 55.0% | |
| TCCTTGGCAACATCAGCTGC+TGG | - | 10949:6064-6083 | None:intergenic | 55.0% | |
| TCGACTTCTGGCCAGAGGAT+GGG | + | 10949:5810-5829 | MS.gene07140:CDS | 55.0% | |
| ! | GTCGTGTTGGTCTCGGATAC+CGG | - | 10949:6948-6967 | None:intergenic | 55.0% |
| ! | TCGTGTTGGTCTCGGATACC+GGG | - | 10949:6947-6966 | None:intergenic | 55.0% |
| !! | CACATGTGTCGGTGTCGTGT+TGG | - | 10949:6961-6980 | None:intergenic | 55.0% |
| !! | CGGCAAAGAGAGCATCCCAA+AGG | - | 10949:6502-6521 | None:intergenic | 55.0% |
| !! | GTGAAAAGGAGGCACTGCAC+CGG | - | 10949:6854-6873 | None:intergenic | 55.0% |
| !! | TGTCGGTGTCGTGTTGGTCT+CGG | - | 10949:6955-6974 | None:intergenic | 55.0% |
| GGAAGATGCATGGGGAGTGG+GGG | - | 10949:6675-6694 | None:intergenic | 60.0% | |
| TCCCCGTGGCAAATGAGCAG+AGG | - | 10949:7836-7855 | None:intergenic | 60.0% | |
| ! | GTCGACTTCTGGCCAGAGGA+TGG | + | 10949:5809-5828 | MS.gene07140:CDS | 60.0% |
| !! | GGATGTCGACTTCTGGCCAG+AGG | + | 10949:5805-5824 | MS.gene07140:CDS | 60.0% |
| !! | GCATGGGGAGTGGGGGCATT+TGG | - | 10949:6668-6687 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10949 | gene | 5062 | 8190 | 5062 | ID=MS.gene07140 |
| 10949 | mRNA | 5062 | 8190 | 5062 | ID=MS.gene07140.t1;Parent=MS.gene07140 |
| 10949 | exon | 5062 | 6324 | 5062 | ID=MS.gene07140.t1.exon1;Parent=MS.gene07140.t1 |
| 10949 | CDS | 5062 | 6324 | 5062 | ID=cds.MS.gene07140.t1;Parent=MS.gene07140.t1 |
| 10949 | exon | 7795 | 8190 | 7795 | ID=MS.gene07140.t1.exon2;Parent=MS.gene07140.t1 |
| 10949 | CDS | 7795 | 8190 | 7795 | ID=cds.MS.gene07140.t1;Parent=MS.gene07140.t1 |
| Gene Sequence |
| Protein sequence |
