AlfalfaGEDB | MS.gene071844

M. sativa cultivar XinJiangDaYe / MS.gene071844

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0006950 GO:0006952 GO:0007165 GO:0008150 GO:0008289 GO:0009738 GO:0009755 GO:0009987 GO:0010427 GO:0019208 GO:0019212 GO:0019840 GO:0019888 GO:0030234 GO:0031406 GO:0033293 GO:0036094 GO:0038023 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0050789 GO:0050794 GO:0050896 GO:0060089 GO:0065007 GO:0098772
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071844.t1	ADB44209.1	97.5	157	4	0	1	157	1	157	9.60E-79	302.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071844.t1	Q06931	86.0	157	22	0	1	157	1	157	1.7e-71	270.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071844.t1	D2Y175	97.5	157	4	0	1	157	1	157	6.9e-79	302.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050380	MS.gene071844	0.829387	5.30E-55	-1.69E-46
MS.gene050381	MS.gene071844	0.815298	9.93E-52	-1.69E-46
MS.gene05234	MS.gene071844	0.800537	1.38E-48	-1.69E-46
MS.gene055158	MS.gene071844	0.804226	2.39E-49	-1.69E-46
MS.gene056076	MS.gene071844	0.802625	5.13E-49	-1.69E-46
MS.gene056310	MS.gene071844	0.812166	4.86E-51	-1.69E-46
MS.gene056313	MS.gene071844	0.834151	3.54E-56	-1.69E-46
MS.gene056647	MS.gene071844	0.837387	5.36E-57	-1.69E-46
MS.gene05726	MS.gene071844	0.801729	7.85E-49	-1.69E-46
MS.gene057506	MS.gene071844	0.824329	8.56E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071844.t1	MTR_2g035190	95.541	157	7	1	157	1	157	3.48e-106	300
MS.gene071844.t1	MTR_2g035320	94.268	157	9	1	157	1	157	6.44e-106	299
MS.gene071844.t1	MTR_2g035210	89.809	157	16	1	157	1	157	1.82e-100	285
MS.gene071844.t1	MTR_2g035220	88.535	157	18	1	157	1	157	8.20e-98	278
MS.gene071844.t1	MTR_6g033450	66.879	157	52	1	157	1	157	5.58e-70	208
MS.gene071844.t1	MTR_4g120970	66.879	157	52	1	157	1	157	5.58e-70	208
MS.gene071844.t1	MTR_2g035100	62.420	157	59	1	157	1	157	6.74e-67	201
MS.gene071844.t1	MTR_2g035105	61.783	157	60	1	157	1	157	5.57e-66	198
MS.gene071844.t1	MTR_2g035150	62.420	157	59	1	157	1	157	8.08e-66	198
MS.gene071844.t1	MTR_2g035130	60.510	157	62	1	157	1	157	1.25e-64	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 45 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTTGCTGGCTCTGA+TGG	0.476544	2.2:-53688032	MS.gene071844:CDS
AAGAAGCTATCCATTGTTGA+AGG	0.523757	2.2:-53688754	MS.gene071844:intron
ACAGCTTAGTGGGAGGAACA+GGG	0.680453	2.2:-53688091	MS.gene071844:CDS
AGAGCCTTGTAGAGTTTAGC+TGG	0.426244	2.2:+53688868	None:intergenic
AGATAGAGTTGCATCACCTT+TGG	0.394288	2.2:+53687974	None:intergenic
AGCAGTACGTGAGGAGACTA+AGG	0.536209	2.2:-53687949	MS.gene071844:CDS
ATCTGAATTACCTTCAACAA+TGG	0.509250	2.2:+53688744	None:intergenic
ATTGTTGCTGGCTCTGATGG+TGG	0.570543	2.2:-53688029	MS.gene071844:CDS
CAAAGGAACTGGACTTATCA+AGG	0.516806	2.2:-53687925	MS.gene071844:CDS
CAAAGTGTTGAAATTGTTGA+AGG	0.502542	2.2:-53688799	MS.gene071844:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTGAATTACCTTCAACAA+TGG	+	chr2.2:53688059-53688078	None:intergenic	30.0%
CATGACTATCCAAATAGAAT+TGG	+	chr2.2:53688387-53688406	None:intergenic	30.0%
CTTCAACAATTTCAACACTT+TGG	+	chr2.2:53688003-53688022	None:intergenic	30.0%
GTTGAAATTGTTGAAGGAAA+TGG	-	chr2.2:53688007-53688026	MS.gene071844:CDS	30.0%
AAGAAGCTATCCATTGTTGA+AGG	-	chr2.2:53688046-53688065	MS.gene071844:CDS	35.0%
ATAATACATAAGCTCGTTCC+AGG	-	chr2.2:53688461-53688480	MS.gene071844:intron	35.0%
GAAATTGTTGAAGGAAATGG+AGG	-	chr2.2:53688010-53688029	MS.gene071844:CDS	35.0%
GACAAACATGATGTGACAAA+TGG	-	chr2.2:53688214-53688233	MS.gene071844:intron	35.0%
GATAGCTTCTTAATAGTTCC+GGG	+	chr2.2:53688037-53688056	None:intergenic	35.0%
GGATAGCTTCTTAATAGTTC+CGG	+	chr2.2:53688038-53688057	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	53687887	53688935	53687887	ID=MS.gene071844
chr2.2	mRNA	53687887	53688935	53687887	ID=MS.gene071844.t1;Parent=MS.gene071844
chr2.2	exon	53688755	53688935	53688755	ID=MS.gene071844.t1.exon1;Parent=MS.gene071844.t1
chr2.2	CDS	53688755	53688935	53688755	ID=cds.MS.gene071844.t1;Parent=MS.gene071844.t1
chr2.2	exon	53687887	53688179	53687887	ID=MS.gene071844.t1.exon2;Parent=MS.gene071844.t1
chr2.2	CDS	53687887	53688179	53687887	ID=cds.MS.gene071844.t1;Parent=MS.gene071844.t1

Gene Sequence

>MS.gene071844

ATGGGTGTTTTTACTTTCAATGACGAACATGTCTCAACCGTGGCTCCAGCTAAACTCTACAAGGCTCTTGCAAAAGATGCTGATGAAATCGTCCCAAAGGTGATTTCTGCTGCCCAAAGTGTTGAAATTGTTGAAGGAAATGGAGGACCCGGAACTATTAAGAAGCTATCCATTGTTGAAGGTAATTCAGATCATATACTATGTAGAAATATATAATACTTGAGATCAAATGATACATAGTGTCCGCGTAAAATTGTTTTAGACCGACAACCGATCAAATTTGTCGGTACAACAAAGAATAGTGTAACTACCTTTTATTTAAAAATTGACAAACATGATGTGACAAATGGAAGAGTTGCAATTGATTAATAATTTGATTAAATGATTCACAAATATGTAAGTTAAATTCATTATACCAAAGAAAAGAAAGTTAAATTAATTTTATACCAAAAAAAAAAAAGGAAGTTAAATACAACTGTAGCAAAAAAAATAGTAATCCAATTCTATTTGGATAGTCATGAAGCCATTTATGTTATACTTTTATTTTAAAATAGAATCTTGAGAAATGAAGGAGATAATACATAAGCTCGTTCCAGGGTTATGTCTAATAATTATGGACCTTCAAAAAAATGATTCAGATGATTATTGATACTCGGTAAAGTTCAAATCGATCTTTAACATAAAGAGTTTTTAGTCAAACTTTACTTATATTGAAAAAAAAATATTATATAAATAATTATAATGGTTATATTGCAGATGGCAAAACCAACTTTGTGCTACACAAATTAGATGCAGTGGATGAGGCAAACTTTGGATATAACTACAGCTTAGTGGGAGGAACAGGGTTGGATGAAAATTTAGAGAAAGTTGAATTTGAGACAAAAATTGTTGCTGGCTCTGATGGTGGATCCGTTGTTAAGATTTCAGTGAAATACCATACCAAAGGTGATGCAACTCTATCTGAAGCAGTACGTGAGGAGACTAAGGCCAAAGGAACTGGACTTATCAAGGCCATTGAGGGCTACGTCGTGGCAAACCCTAATTACTAG

Protein sequence

>MS.gene071844.t1

MGVFTFNDEHVSTVAPAKLYKALAKDADEIVPKVISAAQSVEIVEGNGGPGTIKKLSIVEDGKTNFVLHKLDAVDEANFGYNYSLVGGTGLDENLEKVEFETKIVAGSDGGSVVKISVKYHTKGDATLSEAVREETKAKGTGLIKAIEGYVVANPNY