Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074584.t1 | XP_003627378.2 | 99.1 | 219 | 2 | 0 | 1 | 219 | 12 | 230 | 1.60E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074584.t1 | Q9LQI7 | 71.5 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 1.3e-93 | 344.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074584.t1 | G7L8D3 | 99.1 | 219 | 2 | 0 | 1 | 219 | 12 | 230 | 1.2e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene074584 | 0.853411 | 2.43E-61 | -1.69E-46 |
| MS.gene050288 | MS.gene074584 | 0.809912 | 1.50E-50 | -1.69E-46 |
| MS.gene050320 | MS.gene074584 | 0.837184 | 6.04E-57 | -1.69E-46 |
| MS.gene050838 | MS.gene074584 | 0.819941 | 8.92E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene074584 | 0.904266 | 1.47E-79 | -1.69E-46 |
| MS.gene051245 | MS.gene074584 | 0.841103 | 5.82E-58 | -1.69E-46 |
| MS.gene051633 | MS.gene074584 | 0.802669 | 5.03E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene074584 | 0.86394 | 1.74E-64 | -1.69E-46 |
| MS.gene051748 | MS.gene074584 | 0.855594 | 5.68E-62 | -1.69E-46 |
| MS.gene051756 | MS.gene074584 | 0.832654 | 8.36E-56 | -1.69E-46 |
| MS.gene051903 | MS.gene074584 | 0.8365 | 9.03E-57 | -1.69E-46 |
| MS.gene052286 | MS.gene074584 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene074584 | 0.802026 | 6.82E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene074584 | 0.818538 | 1.86E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene074584 | 0.847769 | 9.38E-60 | -1.69E-46 |
| MS.gene053952 | MS.gene074584 | 0.8121 | 5.02E-51 | -1.69E-46 |
| MS.gene055174 | MS.gene074584 | 0.82779 | 1.29E-54 | -1.69E-46 |
| MS.gene055591 | MS.gene074584 | -0.816266 | 6.04E-52 | -1.69E-46 |
| MS.gene056075 | MS.gene074584 | 0.802066 | 6.69E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene074584 | 0.813195 | 2.89E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene074584 | 0.820232 | 7.65E-53 | -1.69E-46 |
| MS.gene057057 | MS.gene074584 | 0.82408 | 9.80E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene074584 | 0.85296 | 3.28E-61 | -1.69E-46 |
| MS.gene057234 | MS.gene074584 | 0.871257 | 7.85E-67 | -1.69E-46 |
| MS.gene057999 | MS.gene074584 | 0.800893 | 1.16E-48 | -1.69E-46 |
| MS.gene058055 | MS.gene074584 | 0.819981 | 8.73E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene074584 | 0.824749 | 6.82E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene074584 | 0.818502 | 1.90E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene074584 | 0.860491 | 1.99E-63 | -1.69E-46 |
| MS.gene059171 | MS.gene074584 | 0.805066 | 1.60E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene074584 | 0.817584 | 3.06E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene074584 | 0.865634 | 5.12E-65 | -1.69E-46 |
| MS.gene061145 | MS.gene074584 | 0.807566 | 4.75E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074584.t1 | MTR_8g022330 | 99.087 | 219 | 2 | 0 | 1 | 219 | 12 | 230 | 6.41e-163 | 449 |
| MS.gene074584.t1 | MTR_8g087310 | 30.198 | 202 | 109 | 7 | 21 | 211 | 135 | 315 | 3.58e-13 | 68.2 |
| MS.gene074584.t1 | MTR_8g087310 | 30.198 | 202 | 109 | 7 | 21 | 211 | 254 | 434 | 3.85e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074584.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene074584.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene074584.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene074584.t1 | AT1G17350 | 71.495 | 214 | 60 | 1 | 1 | 213 | 12 | 225 | 9.52e-119 | 337 |
| MS.gene074584.t1 | AT1G17350 | 69.340 | 212 | 56 | 2 | 1 | 203 | 12 | 223 | 8.77e-110 | 315 |
| MS.gene074584.t1 | AT1G72420 | 67.442 | 215 | 68 | 2 | 1 | 213 | 12 | 226 | 8.26e-109 | 312 |
| MS.gene074584.t1 | AT1G72420 | 67.442 | 215 | 68 | 2 | 1 | 213 | 12 | 226 | 8.26e-109 | 312 |
| MS.gene074584.t1 | AT1G72420 | 67.464 | 209 | 66 | 2 | 7 | 213 | 7 | 215 | 2.04e-105 | 303 |
| MS.gene074584.t1 | AT1G72420 | 63.115 | 122 | 44 | 1 | 1 | 121 | 12 | 133 | 5.75e-52 | 166 |
| MS.gene074584.t1 | AT1G72420 | 63.115 | 122 | 44 | 1 | 1 | 121 | 12 | 133 | 1.19e-51 | 164 |
| MS.gene074584.t1 | AT1G72420 | 63.115 | 122 | 44 | 1 | 1 | 121 | 12 | 133 | 1.19e-51 | 164 |
Find 46 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTATTCTGATTCTGAATT+TGG | 0.164131 | 8.1:+77839106 | MS.gene074584:CDS |
| TGCAATATACCAGTTATCTT+TGG | 0.216625 | 8.1:-77840400 | None:intergenic |
| ACGATAGCTATGAAACTTAA+AGG | 0.245721 | 8.1:+77840165 | MS.gene074584:CDS |
| CAGATACCTGAATCTGAAAA+TGG | 0.295053 | 8.1:+77839250 | MS.gene074584:CDS |
| TGCAGATATACACGGAGAAT+TGG | 0.328795 | 8.1:+77840322 | MS.gene074584:intron |
| TTGATTTCAACAGCTATATC+TGG | 0.331646 | 8.1:+77839004 | MS.gene074584:intron |
| CAAAACCTATACTACATCAT+TGG | 0.343817 | 8.1:-77842655 | None:intergenic |
| GCAATATACCAGTTATCTTT+GGG | 0.348274 | 8.1:-77840399 | None:intergenic |
| TTGTGGAATGCGCTCCAAAA+AGG | 0.350095 | 8.1:+77839354 | MS.gene074584:CDS |
| TTTACGTGCCCAAAGATAAC+TGG | 0.351126 | 8.1:+77840391 | MS.gene074584:CDS |
| CCAAGCAAGAATTATCAAAA+TGG | 0.360136 | 8.1:+77839080 | MS.gene074584:CDS |
| ATTTCAGACTTGAACTTGAA+TGG | 0.375010 | 8.1:+77842608 | MS.gene074584:CDS |
| GGTGTCCCAGGTGCTAGATC+TGG | 0.377828 | 8.1:+77842577 | MS.gene074584:CDS |
| ATGAATCCATCACGTGTTCT+TGG | 0.389127 | 8.1:+77842526 | MS.gene074584:CDS |
| CATTGGGTTCTCACTTCTCA+TGG | 0.392116 | 8.1:-77842638 | None:intergenic |
| TCTGAAAATGGTAAAACTAC+TGG | 0.430983 | 8.1:+77839262 | MS.gene074584:CDS |
| CTCTGGGAATCTTTCTCTTG+AGG | 0.435126 | 8.1:+77839291 | MS.gene074584:CDS |
| TATTCTGATTCTGAATTTGG+AGG | 0.441704 | 8.1:+77839109 | MS.gene074584:CDS |
| AAAACCTATACTACATCATT+GGG | 0.453436 | 8.1:-77842654 | None:intergenic |
| AATGCCGAGGGTGGTGTCCC+AGG | 0.459127 | 8.1:+77842565 | MS.gene074584:CDS |
| GCAGATATACACGGAGAATT+GGG | 0.459883 | 8.1:+77840323 | MS.gene074584:intron |
| GTTTGATGGCTTCATTGACT+TGG | 0.463757 | 8.1:+77840131 | MS.gene074584:intron |
| CCTGGTCCAGATCTAGCACC+TGG | 0.491978 | 8.1:-77842583 | None:intergenic |
| TCAATGGATGCTACTAAGAA+AGG | 0.500994 | 8.1:+77838922 | None:intergenic |
| GCTATGAAACTTAAAGGAGA+TGG | 0.505648 | 8.1:+77840171 | MS.gene074584:CDS |
| GAGTTGTCCTCCATCTGTCC+AGG | 0.525035 | 8.1:-77840354 | None:intergenic |
| CTTTCTCTTGAGGTTACTCA+AGG | 0.526391 | 8.1:+77839301 | MS.gene074584:CDS |
| TAGCTCGATATGTACCTACT+TGG | 0.540332 | 8.1:+77842473 | MS.gene074584:CDS |
| GGTTAACTCACCTGGACAGA+TGG | 0.543070 | 8.1:+77840344 | MS.gene074584:CDS |
| AAGTGGAATATTAGTAGAGG+TGG | 0.553563 | 8.1:+77839328 | MS.gene074584:CDS |
| GCTAAGTGGAATATTAGTAG+AGG | 0.567692 | 8.1:+77839325 | MS.gene074584:CDS |
| GACAGATGGAGGACAACTCA+TGG | 0.575304 | 8.1:+77840358 | MS.gene074584:CDS |
| AGCACCTGGGACACCACCCT+CGG | 0.576679 | 8.1:-77842569 | None:intergenic |
| CCAGGTGCTAGATCTGGACC+AGG | 0.581357 | 8.1:+77842583 | MS.gene074584:CDS |
| GAGAATTGGGTTAACTCACC+TGG | 0.591802 | 8.1:+77840336 | MS.gene074584:CDS |
| AGGTTACTCAAGGTGCTAAG+TGG | 0.593770 | 8.1:+77839311 | MS.gene074584:CDS |
| CGATATGTACCTACTTGGAG+AGG | 0.604855 | 8.1:+77842478 | MS.gene074584:CDS |
| GACATGCCAAGAACACGTGA+TGG | 0.606451 | 8.1:-77842532 | None:intergenic |
| GTAGGTACATATCGAGCTAG+AGG | 0.608047 | 8.1:-77842469 | None:intergenic |
| AGATAACTGGTATATTGCAA+AGG | 0.608700 | 8.1:+77840404 | MS.gene074584:CDS |
| ATAACATTCCCTCTCCAAGT+AGG | 0.627204 | 8.1:-77842487 | None:intergenic |
| AGTTCAAGTCTGAAATCACC+TGG | 0.640637 | 8.1:-77842601 | None:intergenic |
| TAACTCACCTGGACAGATGG+AGG | 0.644910 | 8.1:+77840347 | MS.gene074584:CDS |
| GATATGTACCTACTTGGAGA+GGG | 0.650673 | 8.1:+77842479 | MS.gene074584:CDS |
| GATTATGGTGCAGATATACA+CGG | 0.690928 | 8.1:+77840314 | MS.gene074584:intron |
| CTGGTCCAGATCTAGCACCT+GGG | 0.695025 | 8.1:-77842582 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATCAATTTAATGAA+TGG | + | chr8.1:77841290-77841309 | MS.gene074584:intron | 10.0% |
| !!! | TTATTTTTTGATATAGAAAT+AGG | - | chr8.1:77839478-77839497 | None:intergenic | 10.0% |
| !! | TTTAAATAATCAATTCAAAC+AGG | + | chr8.1:77839639-77839658 | MS.gene074584:intron | 15.0% |
| !!! | AAGTTGAATATATATTTTTC+AGG | - | chr8.1:77839055-77839074 | None:intergenic | 15.0% |
| !!! | CAGAAAAAATATAGAATTTT+TGG | + | chr8.1:77840646-77840665 | MS.gene074584:intron | 15.0% |
| !!! | TTAAAAAACACTAACATTTT+AGG | - | chr8.1:77841455-77841474 | None:intergenic | 15.0% |
| !!! | TTGATTTTGAAGAAAAAAAA+GGG | + | chr8.1:77842163-77842182 | MS.gene074584:intron | 15.0% |
| !!! | TTTGATTTTGAAGAAAAAAA+AGG | + | chr8.1:77842162-77842181 | MS.gene074584:intron | 15.0% |
| !! | ACCAAATAATTTAAACTTTG+GGG | - | chr8.1:77841334-77841353 | None:intergenic | 20.0% |
| !! | ATAACAAGTACAAAATCAAT+GGG | - | chr8.1:77841851-77841870 | None:intergenic | 20.0% |
| !! | CACCAAATAATTTAAACTTT+GGG | - | chr8.1:77841335-77841354 | None:intergenic | 20.0% |
| !! | TATAACAAGTACAAAATCAA+TGG | - | chr8.1:77841852-77841871 | None:intergenic | 20.0% |
| !! | TCACCAAATAATTTAAACTT+TGG | - | chr8.1:77841336-77841355 | None:intergenic | 20.0% |
| !!! | ACTTTGGTTAATTTAATTTC+TGG | + | chr8.1:77839162-77839181 | MS.gene074584:intron | 20.0% |
| !!! | ATTTGGCATTTTAAAAGAAA+AGG | - | chr8.1:77840224-77840243 | None:intergenic | 20.0% |
| !!! | ATTTTGCATTCAGATAAAAA+AGG | - | chr8.1:77840825-77840844 | None:intergenic | 20.0% |
| !!! | CTTTGGTTAATTTAATTTCT+GGG | + | chr8.1:77839163-77839182 | MS.gene074584:intron | 20.0% |
| !!! | TATTTTTGTCTATTTTGTTC+TGG | + | chr8.1:77841944-77841963 | MS.gene074584:intron | 20.0% |
| !!! | TGATTTTGAAGAAAAAAAAG+GGG | + | chr8.1:77842164-77842183 | MS.gene074584:intron | 20.0% |
| !!! | TTAAATTATTTGGTGAAATC+AGG | + | chr8.1:77841340-77841359 | MS.gene074584:intron | 20.0% |
| !!! | TTGAATATATATTTTTCAGG+TGG | - | chr8.1:77839052-77839071 | None:intergenic | 20.0% |
| !!! | TTTTTATAATAAGTCACGTT+TGG | - | chr8.1:77840715-77840734 | None:intergenic | 20.0% |
| ! | AAATTTCCTAGGATATCATT+TGG | - | chr8.1:77840241-77840260 | None:intergenic | 25.0% |
| ! | AATGAGATAGTATACATTTG+TGG | - | chr8.1:77841074-77841093 | None:intergenic | 25.0% |
| ! | AATGCAACAAATGAATCATA+AGG | + | chr8.1:77841483-77841502 | MS.gene074584:intron | 25.0% |
| ! | AATTCAATTCAATATGCACT+AGG | - | chr8.1:77840034-77840053 | None:intergenic | 25.0% |
| ! | AGCTAATAAGTCAATTCAAA+CGG | + | chr8.1:77839981-77840000 | MS.gene074584:intron | 25.0% |
| ! | ATTCAGATAAAAAAGGAAAC+GGG | - | chr8.1:77840818-77840837 | None:intergenic | 25.0% |
| ! | ATTGAATTGAATTGTCTGAT+TGG | + | chr8.1:77840041-77840060 | MS.gene074584:intron | 25.0% |
| ! | CAAGATAACTTATAGCTTAT+AGG | - | chr8.1:77839520-77839539 | None:intergenic | 25.0% |
| ! | CATATCAATCATTACTAATC+AGG | - | chr8.1:77840460-77840479 | None:intergenic | 25.0% |
| ! | CATTCAGATAAAAAAGGAAA+CGG | - | chr8.1:77840819-77840838 | None:intergenic | 25.0% |
| ! | CTAAAAGAATAATTGTTGCT+TGG | + | chr8.1:77842281-77842300 | MS.gene074584:intron | 25.0% |
| ! | CTTTACAAACAAGTTCAAAT+TGG | - | chr8.1:77841575-77841594 | None:intergenic | 25.0% |
| ! | TAAGCTAAATTTAGCTACAA+CGG | + | chr8.1:77841764-77841783 | MS.gene074584:intron | 25.0% |
| ! | TATCAAAATCTGCTATGTTA+TGG | - | chr8.1:77840531-77840550 | None:intergenic | 25.0% |
| ! | TATCTATTGAGTAAACACTT+GGG | + | chr8.1:77842134-77842153 | MS.gene074584:intron | 25.0% |
| ! | TATTGTAACTAGTTGGATTA+TGG | + | chr8.1:77840299-77840318 | MS.gene074584:intron | 25.0% |
| ! | TCAAATTGTTAATGTTGTTC+AGG | + | chr8.1:77839208-77839227 | MS.gene074584:intron | 25.0% |
| ! | TCCCCAAAGTTTAAATTATT+TGG | + | chr8.1:77841330-77841349 | MS.gene074584:intron | 25.0% |
| ! | TCTATGTATATGTAAGTGAA+GGG | + | chr8.1:77842323-77842342 | MS.gene074584:intron | 25.0% |
| ! | TCTATTTAACAATGAAGTTC+TGG | + | chr8.1:77840915-77840934 | MS.gene074584:intron | 25.0% |
| ! | TTATCTATTGAGTAAACACT+TGG | + | chr8.1:77842133-77842152 | MS.gene074584:intron | 25.0% |
| ! | TTCTATGTATATGTAAGTGA+AGG | + | chr8.1:77842322-77842341 | MS.gene074584:intron | 25.0% |
| ! | TTGTATTCTGATTCTGAATT+TGG | + | chr8.1:77839106-77839125 | MS.gene074584:CDS | 25.0% |
| ! | TTTCTCTATTAGGAAAATAG+CGG | + | chr8.1:77840583-77840602 | MS.gene074584:intron | 25.0% |
| !! | ATAGCATTGAATTGTATGAA+TGG | + | chr8.1:77839704-77839723 | MS.gene074584:intron | 25.0% |
| !! | ATGATAACCTGTAATTTTGT+AGG | + | chr8.1:77840983-77841002 | MS.gene074584:intron | 25.0% |
| !! | ATTTTCCTAATAGAGAAACT+AGG | - | chr8.1:77840581-77840600 | None:intergenic | 25.0% |
| !! | CAATTTGAACTTGTTTGTAA+AGG | + | chr8.1:77841573-77841592 | MS.gene074584:intron | 25.0% |
| !! | GACTTATTAGCTTATCTAAT+GGG | - | chr8.1:77839973-77839992 | None:intergenic | 25.0% |
| !! | TATGATTCATTTGTTGCATT+TGG | - | chr8.1:77841483-77841502 | None:intergenic | 25.0% |
| !! | TGACTTATTAGCTTATCTAA+TGG | - | chr8.1:77839974-77839993 | None:intergenic | 25.0% |
| !!! | AATATATATTTTTCAGGTGG+TGG | - | chr8.1:77839049-77839068 | None:intergenic | 25.0% |
| AAAATGCCAAATGATATCCT+AGG | + | chr8.1:77840232-77840251 | MS.gene074584:intron | 30.0% | |
| AAACTAGAATCAAGAGTTTG+AGG | + | chr8.1:77841389-77841408 | MS.gene074584:intron | 30.0% | |
| AAGCTAAATTTAGCTACAAC+GGG | + | chr8.1:77841765-77841784 | MS.gene074584:intron | 30.0% | |
| AAGTTATCTTGTAGAGCTTA+TGG | + | chr8.1:77839529-77839548 | MS.gene074584:intron | 30.0% | |
| AAGTTTGCAATGAAACCAAA+AGG | + | chr8.1:77841692-77841711 | MS.gene074584:intron | 30.0% | |
| AATACGTCCTACAAAATTAC+AGG | - | chr8.1:77840993-77841012 | None:intergenic | 30.0% | |
| AATGATTGATATGTTCGACT+AGG | + | chr8.1:77840467-77840486 | MS.gene074584:intron | 30.0% | |
| ACGATAGCTATGAAACTTAA+AGG | + | chr8.1:77840165-77840184 | MS.gene074584:CDS | 30.0% | |
| ACTATCCTAGTTTCTCTATT+AGG | + | chr8.1:77840573-77840592 | MS.gene074584:intron | 30.0% | |
| ACTTCGATTATGCAAATTTC+TGG | + | chr8.1:77841267-77841286 | MS.gene074584:intron | 30.0% | |
| AGATAACTGGTATATTGCAA+AGG | + | chr8.1:77840404-77840423 | MS.gene074584:CDS | 30.0% | |
| AGCGAAGCTTACATATTAAA+AGG | - | chr8.1:77840790-77840809 | None:intergenic | 30.0% | |
| AGGAAATACTATAAACGGAT+AGG | + | chr8.1:77842198-77842217 | MS.gene074584:intron | 30.0% | |
| AGTCAACTATACACAAGAAA+AGG | - | chr8.1:77840849-77840868 | None:intergenic | 30.0% | |
| ATATACATAGAAAGCCAACA+AGG | - | chr8.1:77842314-77842333 | None:intergenic | 30.0% | |
| ATCTATTGAGTAAACACTTG+GGG | + | chr8.1:77842135-77842154 | MS.gene074584:intron | 30.0% | |
| ATTTCAGACTTGAACTTGAA+TGG | + | chr8.1:77842608-77842627 | MS.gene074584:CDS | 30.0% | |
| CCAAGCAAGAATTATCAAAA+TGG | + | chr8.1:77839080-77839099 | MS.gene074584:CDS | 30.0% | |
| GATATCCTAGGAAATTTAGA+GGG | + | chr8.1:77840244-77840263 | MS.gene074584:intron | 30.0% | |
| GCAATATACCAGTTATCTTT+GGG | - | chr8.1:77840402-77840421 | None:intergenic | 30.0% | |
| TAAATAGAAGATAGCATTGC+AGG | - | chr8.1:77840903-77840922 | None:intergenic | 30.0% | |
| TATTCTGATTCTGAATTTGG+AGG | + | chr8.1:77839109-77839128 | MS.gene074584:CDS | 30.0% | |
| TCAATATTACTAAAGAGCGA+CGG | - | chr8.1:77841810-77841829 | None:intergenic | 30.0% | |
| TCTGAAAATGGTAAAACTAC+TGG | + | chr8.1:77839262-77839281 | MS.gene074584:CDS | 30.0% | |
| TGACTTATTTCAATGACATG+CGG | + | chr8.1:77840864-77840883 | MS.gene074584:intron | 30.0% | |
| TGATATCCTAGGAAATTTAG+AGG | + | chr8.1:77840243-77840262 | MS.gene074584:intron | 30.0% | |
| TGCAATATACCAGTTATCTT+TGG | - | chr8.1:77840403-77840422 | None:intergenic | 30.0% | |
| TGGTCAGGAAATACTATAAA+CGG | + | chr8.1:77842193-77842212 | MS.gene074584:intron | 30.0% | |
| TTAAAAGAAAAGGACACTCA+CGG | - | chr8.1:77840214-77840233 | None:intergenic | 30.0% | |
| TTAGCTTATCTAATGGGATA+AGG | - | chr8.1:77839967-77839986 | None:intergenic | 30.0% | |
| TTCAGATAAAAAAGGAAACG+GGG | - | chr8.1:77840817-77840836 | None:intergenic | 30.0% | |
| TTCTCTATTAGGAAAATAGC+GGG | + | chr8.1:77840584-77840603 | MS.gene074584:intron | 30.0% | |
| TTGAGATTAAGGACTAGATA+AGG | + | chr8.1:77841145-77841164 | MS.gene074584:intron | 30.0% | |
| TTGAGTGATTATAGTGTAAG+CGG | + | chr8.1:77839776-77839795 | MS.gene074584:intron | 30.0% | |
| TTGATTTCAACAGCTATATC+TGG | + | chr8.1:77839004-77839023 | MS.gene074584:intron | 30.0% | |
| TTGTTTGTAAAGGAGGTTAA+CGG | + | chr8.1:77841583-77841602 | MS.gene074584:intron | 30.0% | |
| ! | AAAACTACTGGAATTTTCTC+TGG | + | chr8.1:77839274-77839293 | MS.gene074584:CDS | 30.0% |
| ! | AAACTACTGGAATTTTCTCT+GGG | + | chr8.1:77839275-77839294 | MS.gene074584:CDS | 30.0% |
| ! | AAATTTAGCTTAGTAGAGCT+AGG | - | chr8.1:77841756-77841775 | None:intergenic | 30.0% |
| ! | AGTTAAAAAAGCCACCTTTT+TGG | - | chr8.1:77839371-77839390 | None:intergenic | 30.0% |
| ! | CTAACATTTTAGGCATGTAA+AGG | - | chr8.1:77841445-77841464 | None:intergenic | 30.0% |
| ! | CTACGTTTTGCAATTTAATC+AGG | - | chr8.1:77841104-77841123 | None:intergenic | 30.0% |
| ! | GTTGCTAAAGTTTGAAACTT+TGG | + | chr8.1:77839146-77839165 | MS.gene074584:intron | 30.0% |
| ! | GTTTTACCATTTTCAGATTC+AGG | - | chr8.1:77839259-77839278 | None:intergenic | 30.0% |
| ! | TCAAAGACTTTAGTGTTGTT+TGG | + | chr8.1:77839390-77839409 | MS.gene074584:intron | 30.0% |
| ! | TTGCAAGTATTGTAACTAGT+TGG | + | chr8.1:77840292-77840311 | MS.gene074584:intron | 30.0% |
| ! | TTTGAACTTGTTTGTAAAGG+AGG | + | chr8.1:77841576-77841595 | MS.gene074584:intron | 30.0% |
| !! | AGAAAAAAAAGGGGTTTTGA+TGG | + | chr8.1:77842173-77842192 | MS.gene074584:intron | 30.0% |
| !! | CCATTTTGATAATTCTTGCT+TGG | - | chr8.1:77839083-77839102 | None:intergenic | 30.0% |
| !! | TCTGTGTTTTTGTAGTTTGA+TGG | + | chr8.1:77840117-77840136 | MS.gene074584:intron | 30.0% |
| !! | TTCTCATTTTTGTTCAACGA+CGG | + | chr8.1:77840071-77840090 | MS.gene074584:intron | 30.0% |
| AAGGAGATGTGAGACTTTAT+GGG | - | chr8.1:77839948-77839967 | None:intergenic | 35.0% | |
| AAGTGGAATATTAGTAGAGG+TGG | + | chr8.1:77839328-77839347 | MS.gene074584:CDS | 35.0% | |
| AAGTTCGACAACAACATAGA+TGG | + | chr8.1:77839672-77839691 | MS.gene074584:intron | 35.0% | |
| ACTATTGTAAAACCTTGCAG+TGG | - | chr8.1:77841212-77841231 | None:intergenic | 35.0% | |
| ATTGTGGTCTGATCTAGTAT+GGG | + | chr8.1:77841975-77841994 | MS.gene074584:intron | 35.0% | |
| CAAAAACACAGAATTGCGTA+AGG | - | chr8.1:77840109-77840128 | None:intergenic | 35.0% | |
| CAGATACCTGAATCTGAAAA+TGG | + | chr8.1:77839250-77839269 | MS.gene074584:CDS | 35.0% | |
| CATCACTTCAGTGCTTAATA+TGG | - | chr8.1:77842364-77842383 | None:intergenic | 35.0% | |
| GATTATGGTGCAGATATACA+CGG | + | chr8.1:77840314-77840333 | MS.gene074584:intron | 35.0% | |
| GCTAAGTGGAATATTAGTAG+AGG | + | chr8.1:77839325-77839344 | MS.gene074584:CDS | 35.0% | |
| GCTATGAAACTTAAAGGAGA+TGG | + | chr8.1:77840171-77840190 | MS.gene074584:CDS | 35.0% | |
| GTAAGCAGTAAGATGGAAAT+GGG | - | chr8.1:77840435-77840454 | None:intergenic | 35.0% | |
| GTATATGTAAGTGAAGGGAT+GGG | + | chr8.1:77842328-77842347 | MS.gene074584:intron | 35.0% | |
| TAAAGGACCAACTAAATTGC+AGG | - | chr8.1:77841428-77841447 | None:intergenic | 35.0% | |
| TAAGGAGATGTGAGACTTTA+TGG | - | chr8.1:77839949-77839968 | None:intergenic | 35.0% | |
| TATTGTGGTCTGATCTAGTA+TGG | + | chr8.1:77841974-77841993 | MS.gene074584:intron | 35.0% | |
| TCAAACCCTCTAAATTTCCT+AGG | - | chr8.1:77840252-77840271 | None:intergenic | 35.0% | |
| TCAGATAAAAAAGGAAACGG+GGG | - | chr8.1:77840816-77840835 | None:intergenic | 35.0% | |
| TGTAAGCAGTAAGATGGAAA+TGG | - | chr8.1:77840436-77840455 | None:intergenic | 35.0% | |
| TGTATATGTAAGTGAAGGGA+TGG | + | chr8.1:77842327-77842346 | MS.gene074584:intron | 35.0% | |
| TGTTGTCGAACTTGAACAAA+GGG | - | chr8.1:77839665-77839684 | None:intergenic | 35.0% | |
| TTGTTGTCGAACTTGAACAA+AGG | - | chr8.1:77839666-77839685 | None:intergenic | 35.0% | |
| ! | ATGGGTTTCTTCATGTTTTC+TGG | - | chr8.1:77841666-77841685 | None:intergenic | 35.0% |
| ! | ATTTAAACTTTGGGGAGAGT+TGG | - | chr8.1:77841326-77841345 | None:intergenic | 35.0% |
| ! | CTCAATGATTTTGCAGTGTT+TGG | + | chr8.1:77839742-77839761 | MS.gene074584:intron | 35.0% |
| ! | CTCACAAGTTTTTATGCTAG+TGG | + | chr8.1:77839611-77839630 | MS.gene074584:intron | 35.0% |
| ! | GGGTTTGAAGTTTCATTTCA+TGG | + | chr8.1:77840264-77840283 | MS.gene074584:intron | 35.0% |
| ! | TCTGTGACATTGTTTGAGTT+GGG | - | chr8.1:77841643-77841662 | None:intergenic | 35.0% |
| !! | ATTAGTAGAGGTGGATTTTG+TGG | + | chr8.1:77839337-77839356 | MS.gene074584:CDS | 35.0% |
| !! | TAGTGTTGAGGTTTTTGTTG+CGG | - | chr8.1:77840557-77840576 | None:intergenic | 35.0% |
| AGAGCTAGGTTTCAACTCAT+CGG | - | chr8.1:77841742-77841761 | None:intergenic | 40.0% | |
| AGGAGATGTGAGACTTTATG+GGG | - | chr8.1:77839947-77839966 | None:intergenic | 40.0% | |
| ATAACATTCCCTCTCCAAGT+AGG | - | chr8.1:77842490-77842509 | None:intergenic | 40.0% | |
| ATGAATCCATCACGTGTTCT+TGG | + | chr8.1:77842526-77842545 | MS.gene074584:CDS | 40.0% | |
| CAAAACGTAGTTACCTTGAC+GGG | + | chr8.1:77841114-77841133 | MS.gene074584:intron | 40.0% | |
| CATTGCAAACTTGCAACGAT+GGG | - | chr8.1:77841684-77841703 | None:intergenic | 40.0% | |
| CTAAATTTAGCTACAACGGG+AGG | + | chr8.1:77841768-77841787 | MS.gene074584:intron | 40.0% | |
| CTTTCTCTTGAGGTTACTCA+AGG | + | chr8.1:77839301-77839320 | MS.gene074584:CDS | 40.0% | |
| GAAATCAGGTTAACTCGCTT+AGG | + | chr8.1:77841354-77841373 | MS.gene074584:intron | 40.0% | |
| GAACAAGCCTGCAATTTAGT+TGG | + | chr8.1:77841418-77841437 | MS.gene074584:intron | 40.0% | |
| GAGAAACTAGGATAGTGTTG+AGG | - | chr8.1:77840569-77840588 | None:intergenic | 40.0% | |
| GATATGTACCTACTTGGAGA+GGG | + | chr8.1:77842479-77842498 | MS.gene074584:CDS | 40.0% | |
| GATCTAGTATGGGTTTAAGC+TGG | + | chr8.1:77841985-77842004 | MS.gene074584:intron | 40.0% | |
| GCAAAACGTAGTTACCTTGA+CGG | + | chr8.1:77841113-77841132 | MS.gene074584:intron | 40.0% | |
| GCAGATATACACGGAGAATT+GGG | + | chr8.1:77840323-77840342 | MS.gene074584:intron | 40.0% | |
| GTCTGTGACATTGTTTGAGT+TGG | - | chr8.1:77841644-77841663 | None:intergenic | 40.0% | |
| TAGCTCGATATGTACCTACT+TGG | + | chr8.1:77842473-77842492 | MS.gene074584:CDS | 40.0% | |
| TCATTGCAAACTTGCAACGA+TGG | - | chr8.1:77841685-77841704 | None:intergenic | 40.0% | |
| TGCAGATATACACGGAGAAT+TGG | + | chr8.1:77840322-77840341 | MS.gene074584:intron | 40.0% | |
| TGTTCTGGTCTGTTCTATTG+TGG | + | chr8.1:77841959-77841978 | MS.gene074584:intron | 40.0% | |
| TTGTAAAACCTTGCAGTGGA+TGG | - | chr8.1:77841208-77841227 | None:intergenic | 40.0% | |
| TTTACGTGCCCAAAGATAAC+TGG | + | chr8.1:77840391-77840410 | MS.gene074584:CDS | 40.0% | |
| ! | AGTTCAAGTCTGAAATCACC+TGG | - | chr8.1:77842604-77842623 | None:intergenic | 40.0% |
| ! | GTAATTTTCCATCCACTGCA+AGG | + | chr8.1:77841197-77841216 | MS.gene074584:intron | 40.0% |
| ! | GTTTGATGGCTTCATTGACT+TGG | + | chr8.1:77840131-77840150 | MS.gene074584:intron | 40.0% |
| ! | TCAGGTTGTAAGCAGTAAGA+TGG | - | chr8.1:77840442-77840461 | None:intergenic | 40.0% |
| ! | TCTTTTTCTGTCAATGCCGA+GGG | + | chr8.1:77842553-77842572 | MS.gene074584:CDS | 40.0% |
| !! | AAAAAGGGGTTTTGATGGTC+AGG | + | chr8.1:77842178-77842197 | MS.gene074584:intron | 40.0% |
| !! | GGGCTTGAACTTTGAGATTA+AGG | + | chr8.1:77841134-77841153 | MS.gene074584:intron | 40.0% |
| !! | TTGTTTGAGTTGGGACTATG+AGG | - | chr8.1:77841634-77841653 | None:intergenic | 40.0% |
| AGGTTTCAACTCATCGGAGT+TGG | - | chr8.1:77841736-77841755 | None:intergenic | 45.0% | |
| AGTGAAGGGATGGGTATCAT+TGG | + | chr8.1:77842337-77842356 | MS.gene074584:intron | 45.0% | |
| CATATCGAGCTAGAGGAATC+TGG | - | chr8.1:77842465-77842484 | None:intergenic | 45.0% | |
| CATTGGGTTCTCACTTCTCA+TGG | - | chr8.1:77842641-77842660 | None:intergenic | 45.0% | |
| CGATATGTACCTACTTGGAG+AGG | + | chr8.1:77842478-77842497 | MS.gene074584:CDS | 45.0% | |
| GAGAATTGGGTTAACTCACC+TGG | + | chr8.1:77840336-77840355 | MS.gene074584:CDS | 45.0% | |
| GGAGATGTGAGACTTTATGG+GGG | - | chr8.1:77839946-77839965 | None:intergenic | 45.0% | |
| GGTTTCAACTCATCGGAGTT+GGG | - | chr8.1:77841735-77841754 | None:intergenic | 45.0% | |
| GTAGGTACATATCGAGCTAG+AGG | - | chr8.1:77842472-77842491 | None:intergenic | 45.0% | |
| GTATGGGTTTAAGCTGGATC+TGG | + | chr8.1:77841991-77842010 | MS.gene074584:intron | 45.0% | |
| GTTGGGTTCATTCATCTGGT+TGG | - | chr8.1:77841718-77841737 | None:intergenic | 45.0% | |
| TTGTGGAATGCGCTCCAAAA+AGG | + | chr8.1:77839354-77839373 | MS.gene074584:CDS | 45.0% | |
| ! | AGGTTACTCAAGGTGCTAAG+TGG | + | chr8.1:77839311-77839330 | MS.gene074584:CDS | 45.0% |
| ! | CTCTGGGAATCTTTCTCTTG+AGG | + | chr8.1:77839291-77839310 | MS.gene074584:CDS | 45.0% |
| ! | GTCTTTTTCTGTCAATGCCG+AGG | + | chr8.1:77842552-77842571 | MS.gene074584:CDS | 45.0% |
| !!! | CATTCATCTGGTTGGCCTTT+TGG | - | chr8.1:77841710-77841729 | None:intergenic | 45.0% |
| !!! | TGCTTGGTTTTGTGCCTTGT+TGG | + | chr8.1:77842297-77842316 | MS.gene074584:intron | 45.0% |
| ACACCACCACAAATCACCTG+AGG | - | chr8.1:77842017-77842036 | None:intergenic | 50.0% | |
| ACTAAAGAGCGACGGATGAC+TGG | - | chr8.1:77841802-77841821 | None:intergenic | 50.0% | |
| ACTAGCTGACGCAGTTGCAA+TGG | + | chr8.1:77840623-77840642 | MS.gene074584:intron | 50.0% | |
| ATCTGGCCTCAGGTGATTTG+TGG | + | chr8.1:77842008-77842027 | MS.gene074584:intron | 50.0% | |
| CGGAGTTGGGTTCATTCATC+TGG | - | chr8.1:77841722-77841741 | None:intergenic | 50.0% | |
| CTCAAAGTTCAAGCCCGTCA+AGG | - | chr8.1:77841130-77841149 | None:intergenic | 50.0% | |
| GACAGATGGAGGACAACTCA+TGG | + | chr8.1:77840358-77840377 | MS.gene074584:CDS | 50.0% | |
| GACATGCCAAGAACACGTGA+TGG | - | chr8.1:77842535-77842554 | None:intergenic | 50.0% | |
| GGTTAACTCACCTGGACAGA+TGG | + | chr8.1:77840344-77840363 | MS.gene074584:CDS | 50.0% | |
| TAACTCACCTGGACAGATGG+AGG | + | chr8.1:77840347-77840366 | MS.gene074584:CDS | 50.0% | |
| TGGAATGCGCTCCAAAAAGG+TGG | + | chr8.1:77839357-77839376 | MS.gene074584:intron | 50.0% | |
| TTTAAGCTGGATCTGGCCTC+AGG | + | chr8.1:77841998-77842017 | MS.gene074584:intron | 50.0% | |
| ! | AGGTGATTTGTGGTGGTGTG+GGG | + | chr8.1:77842018-77842037 | MS.gene074584:intron | 50.0% |
| ! | CAGGTGATTTGTGGTGGTGT+GGG | + | chr8.1:77842017-77842036 | MS.gene074584:intron | 50.0% |
| ! | TCAGGTGATTTGTGGTGGTG+TGG | + | chr8.1:77842016-77842035 | MS.gene074584:intron | 50.0% |
| ! | TTTTCTGTCAATGCCGAGGG+TGG | + | chr8.1:77842556-77842575 | MS.gene074584:CDS | 50.0% |
| CTGCGTCAGCTAGTAGAGAC+TGG | - | chr8.1:77840617-77840636 | None:intergenic | 55.0% | |
| CTGGTCCAGATCTAGCACCT+GGG | - | chr8.1:77842585-77842604 | None:intergenic | 55.0% | |
| GAGTTGTCCTCCATCTGTCC+AGG | - | chr8.1:77840357-77840376 | None:intergenic | 55.0% | |
| ! | TGATTTGTGGTGGTGTGGGG+TGG | + | chr8.1:77842021-77842040 | MS.gene074584:intron | 55.0% |
| ! | TGGCCTCAGGTGATTTGTGG+TGG | + | chr8.1:77842011-77842030 | MS.gene074584:intron | 55.0% |
| AGAGCGACGGATGACTGGAC+TGG | - | chr8.1:77841797-77841816 | None:intergenic | 60.0% | |
| CCAGGTGCTAGATCTGGACC+AGG | + | chr8.1:77842583-77842602 | MS.gene074584:CDS | 60.0% | |
| CCTGGTCCAGATCTAGCACC+TGG | - | chr8.1:77842586-77842605 | None:intergenic | 60.0% | |
| GAGCGACGGATGACTGGACT+GGG | - | chr8.1:77841796-77841815 | None:intergenic | 60.0% | |
| GGTGTCCCAGGTGCTAGATC+TGG | + | chr8.1:77842577-77842596 | MS.gene074584:CDS | 60.0% | |
| AATGCCGAGGGTGGTGTCCC+AGG | + | chr8.1:77842565-77842584 | MS.gene074584:CDS | 65.0% | |
| AGCACCTGGGACACCACCCT+CGG | - | chr8.1:77842572-77842591 | None:intergenic | 65.0% | |
| TGGTGTGGGGTGGTGCGGTA+CGG | + | chr8.1:77842031-77842050 | MS.gene074584:intron | 65.0% | |
| ! | TGTGGTGGTGTGGGGTGGTG+CGG | + | chr8.1:77842026-77842045 | MS.gene074584:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 77838925 | 77842666 | 77838925 | ID=MS.gene074584 |
| chr8.1 | mRNA | 77838925 | 77842666 | 77838925 | ID=MS.gene074584.t1;Parent=MS.gene074584 |
| chr8.1 | exon | 77838925 | 77838943 | 77838925 | ID=MS.gene074584.t1.exon1;Parent=MS.gene074584.t1 |
| chr8.1 | CDS | 77838925 | 77838943 | 77838925 | ID=cds.MS.gene074584.t1;Parent=MS.gene074584.t1 |
| chr8.1 | exon | 77839017 | 77839130 | 77839017 | ID=MS.gene074584.t1.exon2;Parent=MS.gene074584.t1 |
| chr8.1 | CDS | 77839017 | 77839130 | 77839017 | ID=cds.MS.gene074584.t1;Parent=MS.gene074584.t1 |
| chr8.1 | exon | 77839230 | 77839375 | 77839230 | ID=MS.gene074584.t1.exon3;Parent=MS.gene074584.t1 |
| chr8.1 | CDS | 77839230 | 77839375 | 77839230 | ID=cds.MS.gene074584.t1;Parent=MS.gene074584.t1 |
| chr8.1 | exon | 77840132 | 77840212 | 77840132 | ID=MS.gene074584.t1.exon4;Parent=MS.gene074584.t1 |
| chr8.1 | CDS | 77840132 | 77840212 | 77840132 | ID=cds.MS.gene074584.t1;Parent=MS.gene074584.t1 |
| chr8.1 | exon | 77840327 | 77840425 | 77840327 | ID=MS.gene074584.t1.exon5;Parent=MS.gene074584.t1 |
| chr8.1 | CDS | 77840327 | 77840425 | 77840327 | ID=cds.MS.gene074584.t1;Parent=MS.gene074584.t1 |
| chr8.1 | exon | 77842466 | 77842666 | 77842466 | ID=MS.gene074584.t1.exon6;Parent=MS.gene074584.t1 |
| chr8.1 | CDS | 77842466 | 77842666 | 77842466 | ID=cds.MS.gene074584.t1;Parent=MS.gene074584.t1 |
| Gene Sequence |
| Protein sequence |
