Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07798.t1 | XP_013444378.1 | 97.9 | 96 | 2 | 0 | 1 | 96 | 1 | 96 | 8.30E-25 | 122.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07798.t1 | I3SY47 | 97.9 | 96 | 2 | 0 | 1 | 96 | 1 | 96 | 6.0e-25 | 122.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene07798 | 0.822296 | 2.56E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene07798 | 0.866705 | 2.35E-65 | -1.69E-46 |
| MS.gene050807 | MS.gene07798 | 0.801683 | 8.02E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene07798 | 0.84597 | 2.91E-59 | -1.69E-46 |
| MS.gene051265 | MS.gene07798 | 0.801355 | 9.36E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene07798 | 0.804702 | 1.90E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene07798 | 0.820722 | 5.90E-53 | -1.69E-46 |
| MS.gene052309 | MS.gene07798 | -0.836596 | 8.53E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene07798 | 0.836316 | 1.01E-56 | -1.69E-46 |
| MS.gene052384 | MS.gene07798 | 0.806011 | 1.01E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene07798 | 0.812581 | 3.95E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene07798 | 0.804081 | 2.56E-49 | -1.69E-46 |
| MS.gene054658 | MS.gene07798 | 0.806324 | 8.69E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene07798 | 0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene07798 | 0.804867 | 1.76E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene07798 | 0.807086 | 6.00E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene07798 | -0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene056215 | MS.gene07798 | 0.800477 | 1.42E-48 | -1.69E-46 |
| MS.gene056631 | MS.gene07798 | 0.809999 | 1.43E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene07798 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene057079 | MS.gene07798 | 0.816006 | 6.91E-52 | -1.69E-46 |
| MS.gene057260 | MS.gene07798 | 0.819009 | 1.45E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene07798 | 0.809386 | 1.94E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene07798 | 0.802352 | 5.84E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene07798 | 0.823737 | 1.18E-53 | -1.69E-46 |
| MS.gene059249 | MS.gene07798 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene07798 | 0.807662 | 4.53E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene07798 | 0.806192 | 9.27E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene07798 | 0.801396 | 9.18E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene07798 | 0.825121 | 5.57E-54 | -1.69E-46 |
| MS.gene060572 | MS.gene07798 | 0.825404 | 4.78E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene07798 | 0.825417 | 4.74E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene07798 | 0.829577 | 4.76E-55 | -1.69E-46 |
| MS.gene060907 | MS.gene07798 | 0.802852 | 4.61E-49 | -1.69E-46 |
| MS.gene060917 | MS.gene07798 | 0.815949 | 7.11E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene07798 | -0.815848 | 7.49E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07798.t1 | MTR_8g017610 | 97.917 | 96 | 2 | 0 | 1 | 96 | 1 | 96 | 1.04e-61 | 182 |
| MS.gene07798.t1 | MTR_8g017610 | 93.258 | 89 | 6 | 0 | 8 | 96 | 5 | 93 | 1.63e-53 | 162 |
| MS.gene07798.t1 | MTR_2g039890 | 40.441 | 136 | 24 | 3 | 8 | 86 | 44 | 179 | 7.20e-19 | 76.6 |
| MS.gene07798.t1 | MTR_2g039890 | 53.165 | 79 | 36 | 1 | 15 | 92 | 5 | 83 | 1.27e-17 | 73.6 |
| MS.gene07798.t1 | MTR_2g039890 | 40.441 | 136 | 24 | 3 | 8 | 86 | 91 | 226 | 1.04e-18 | 77.4 |
| MS.gene07798.t1 | MTR_2g039890 | 51.724 | 87 | 41 | 1 | 7 | 92 | 44 | 130 | 3.26e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07798.t1 | AT1G72690 | 58.442 | 77 | 30 | 1 | 14 | 88 | 9 | 85 | 1.13e-25 | 91.7 |
| MS.gene07798.t1 | AT5G57000 | 56.164 | 73 | 28 | 1 | 18 | 86 | 23 | 95 | 6.97e-20 | 78.6 |
| MS.gene07798.t1 | AT5G57000 | 56.164 | 73 | 28 | 1 | 18 | 86 | 70 | 142 | 1.80e-19 | 78.6 |
| MS.gene07798.t1 | AT1G17490 | 50.725 | 69 | 27 | 1 | 21 | 89 | 15 | 76 | 6.55e-17 | 68.9 |
Find 30 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTAATGATTCGGTTTC+AGG | 0.197193 | 8.3:-72520282 | MS.gene07798:intron |
| TGAAACCGAATCATTAAGTT+TGG | 0.256006 | 8.3:+72520284 | None:intergenic |
| TTAGTGTCAGATACTTTCTT+GGG | 0.313391 | 8.3:+72516820 | None:intergenic |
| CTTAGTGTCAGATACTTTCT+TGG | 0.316958 | 8.3:+72516819 | None:intergenic |
| TTAGCCCTCTCAAGAATGTT+TGG | 0.369322 | 8.3:+72517012 | None:intergenic |
| CAGCTATGATCTCACTTTGA+TGG | 0.377459 | 8.3:+72516790 | None:intergenic |
| ATCAAATTCAATGGCAGAAA+AGG | 0.386982 | 8.3:-72520310 | None:intergenic |
| GAAACCGAATCATTAAGTTT+GGG | 0.402495 | 8.3:+72520285 | None:intergenic |
| AGATACTTTCTTGGGGTGAA+TGG | 0.403029 | 8.3:+72516828 | None:intergenic |
| GGAACCCAAACTTAATGATT+CGG | 0.408365 | 8.3:-72520289 | MS.gene07798:CDS |
| TTCCATGAGTTTCTTTGTCA+TGG | 0.419220 | 8.3:+72516947 | None:intergenic |
| AAGCTCCCGGTGTGTTTGAA+AGG | 0.468558 | 8.3:-72516882 | MS.gene07798:CDS |
| AGCTCCCGGTGTGTTTGAAA+GGG | 0.525240 | 8.3:-72516881 | MS.gene07798:CDS |
| CGCCATGACAAAGAAACTCA+TGG | 0.536708 | 8.3:-72516949 | MS.gene07798:CDS |
| CATTCTTGAGAGGGCTAAGG+AGG | 0.553782 | 8.3:-72517007 | MS.gene07798:CDS |
| CAAGAAAGTATCTGACACTA+AGG | 0.557751 | 8.3:-72516818 | MS.gene07798:CDS |
| AAACATTCTTGAGAGGGCTA+AGG | 0.562461 | 8.3:-72517010 | MS.gene07798:CDS |
| CTTCACCCTTTCAAACACAC+CGG | 0.571153 | 8.3:+72516876 | None:intergenic |
| TAGTGTCAGATACTTTCTTG+GGG | 0.578399 | 8.3:+72516821 | None:intergenic |
| AGCTCCAAACATTCTTGAGA+GGG | 0.578483 | 8.3:-72517016 | MS.gene07798:CDS |
| GTTGAAGAAGTCAAAGCTCC+CGG | 0.580117 | 8.3:-72516895 | MS.gene07798:CDS |
| TGAGTTTCTTTGTCATGGCG+AGG | 0.584602 | 8.3:+72516952 | None:intergenic |
| CGGTGTGTTTGAAAGGGTGA+AGG | 0.593554 | 8.3:-72516875 | MS.gene07798:CDS |
| TTCACCCTTTCAAACACACC+GGG | 0.602200 | 8.3:+72516877 | None:intergenic |
| AAGCTCCAAACATTCTTGAG+AGG | 0.602370 | 8.3:-72517017 | MS.gene07798:CDS |
| GAGGGCTAAGGAGGAGACTG+AGG | 0.618637 | 8.3:-72516998 | MS.gene07798:CDS |
| AGAGCTTGAAGCTGTAGTTG+AGG | 0.634155 | 8.3:-72516851 | MS.gene07798:CDS |
| ATGACAAAGAAACTCATGGA+AGG | 0.643744 | 8.3:-72516945 | MS.gene07798:CDS |
| AAGGAATGATGACATTGATG+AGG | 0.657096 | 8.3:-72516926 | MS.gene07798:CDS |
| AGGAATGATGACATTGATGA+GGG | 0.670735 | 8.3:-72516925 | MS.gene07798:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAATATTATTTGTAAAA+CGG | + | chr8.3:72516879-72516898 | None:intergenic | 10.0% |
| !! | AAAACATGATAAGTAATTAT+TGG | - | chr8.3:72518750-72518769 | MS.gene07798:intron | 15.0% |
| !! | ATAAAATATAATAACCAACA+CGG | + | chr8.3:72518163-72518182 | None:intergenic | 15.0% |
| !! | ATACAATAATATAACAAACA+TGG | + | chr8.3:72519357-72519376 | None:intergenic | 15.0% |
| !! | CTAATTTCTATAACTAAAAA+GGG | + | chr8.3:72516990-72517009 | None:intergenic | 15.0% |
| !! | GTTATATTATTGTATTGAAA+GGG | - | chr8.3:72519362-72519381 | MS.gene07798:intron | 15.0% |
| !! | TGTTATATTATTGTATTGAA+AGG | - | chr8.3:72519361-72519380 | MS.gene07798:intron | 15.0% |
| !!! | ATATTTTATTGAAAATGACA+TGG | - | chr8.3:72518174-72518193 | MS.gene07798:intron | 15.0% |
| !!! | TATTGGTTTTAGATATATAT+GGG | - | chr8.3:72518767-72518786 | MS.gene07798:intron | 15.0% |
| !!! | TGACTATTTTATAAATGATT+TGG | - | chr8.3:72518831-72518850 | MS.gene07798:intron | 15.0% |
| !!! | TGAGTATTTTATAAATGATT+TGG | - | chr8.3:72520002-72520021 | MS.gene07798:intron | 15.0% |
| !!! | TTATTGGTTTTAGATATATA+TGG | - | chr8.3:72518766-72518785 | MS.gene07798:intron | 15.0% |
| !!! | TTTTTAGTTATAGAAATTAG+CGG | - | chr8.3:72516990-72517009 | MS.gene07798:CDS | 15.0% |
| !! | AATGAAACAGAATATACAAA+AGG | + | chr8.3:72520046-72520065 | None:intergenic | 20.0% |
| !! | ATGAAACAGAATATACAAAA+GGG | + | chr8.3:72520045-72520064 | None:intergenic | 20.0% |
| !! | GAAACATGATAAGTAATTAT+TGG | - | chr8.3:72519921-72519940 | MS.gene07798:intron | 20.0% |
| !! | GCTAATTTCTATAACTAAAA+AGG | + | chr8.3:72516991-72517010 | None:intergenic | 20.0% |
| !!! | ATAATCTCTGTATAAGTTTT+CGG | + | chr8.3:72518299-72518318 | None:intergenic | 20.0% |
| !!! | ATCTAGTTTTTTCTTTAATC+AGG | - | chr8.3:72518088-72518107 | MS.gene07798:intron | 20.0% |
| !!! | GATAAGTAATTATTGGTTTT+AGG | - | chr8.3:72518757-72518776 | MS.gene07798:intron | 20.0% |
| !!! | GTTTTTTCTTTAATTAGAGT+TGG | - | chr8.3:72519267-72519286 | MS.gene07798:intron | 20.0% |
| !!! | TATAACTAAAAAGGGTATTA+TGG | + | chr8.3:72516982-72517001 | None:intergenic | 20.0% |
| !!! | TCTAGTTTTTTCTTTAATCA+GGG | - | chr8.3:72518089-72518108 | MS.gene07798:intron | 20.0% |
| !!! | TGTAGTTTTTGTCAATATTA+TGG | - | chr8.3:72517542-72517561 | MS.gene07798:intron | 20.0% |
| !!! | TTTTAGTTATAGAAATTAGC+GGG | - | chr8.3:72516991-72517010 | MS.gene07798:CDS | 20.0% |
| !!! | TTTTCTAACTCACAATAATT+AGG | - | chr8.3:72517984-72518003 | MS.gene07798:intron | 20.0% |
| ! | ACATGATAAGAATCTATTTG+TGG | - | chr8.3:72517862-72517881 | MS.gene07798:intron | 25.0% |
| ! | AGGAAAATAACTTTCAACAA+TGG | + | chr8.3:72518880-72518899 | None:intergenic | 25.0% |
| ! | ATAAGATTTGAGTGCATATT+TGG | + | chr8.3:72518642-72518661 | None:intergenic | 25.0% |
| ! | ATCAACGATACTAATTATTG+TGG | + | chr8.3:72519170-72519189 | None:intergenic | 25.0% |
| ! | ATTTGGATTTACAGTGAATT+TGG | + | chr8.3:72518625-72518644 | None:intergenic | 25.0% |
| ! | GTGAGATTGACATTTATATT+GGG | + | chr8.3:72517725-72517744 | None:intergenic | 25.0% |
| ! | TAAGTTTAACAAAATCACAG+TGG | - | chr8.3:72517647-72517666 | MS.gene07798:intron | 25.0% |
| ! | TAATCTCCATAAAAGTCATT+AGG | + | chr8.3:72519485-72519504 | None:intergenic | 25.0% |
| ! | TGAAACAGAATATACAAAAG+GGG | + | chr8.3:72520044-72520063 | None:intergenic | 25.0% |
| ! | TGAGTGTATATTTGGATAAA+CGG | + | chr8.3:72517747-72517766 | None:intergenic | 25.0% |
| ! | TGGTGAATTTAACAAAATCA+CGG | + | chr8.3:72517573-72517592 | None:intergenic | 25.0% |
| ! | TGTAATATGCATGAGTTTAT+AGG | + | chr8.3:72517334-72517353 | None:intergenic | 25.0% |
| ! | TTATTGTATTGAAAGGGATA+TGG | - | chr8.3:72519368-72519387 | MS.gene07798:intron | 25.0% |
| ! | TTCAGATATACCTATAACTT+AGG | - | chr8.3:72519202-72519221 | MS.gene07798:intron | 25.0% |
| !! | ATGGATGTTTTATCTTTGAA+AGG | - | chr8.3:72518193-72518212 | MS.gene07798:intron | 25.0% |
| !! | CATTCTTGATTTAGATTTTG+TGG | - | chr8.3:72516900-72516919 | MS.gene07798:CDS | 25.0% |
| !! | TAATCTCTGTATAAGTTTTC+GGG | + | chr8.3:72518298-72518317 | None:intergenic | 25.0% |
| !! | TCTGAAAGTTCTTTTCTTTT+TGG | - | chr8.3:72517927-72517946 | MS.gene07798:intron | 25.0% |
| !! | TGTAGCTTTTGTCAAAATTA+TGG | - | chr8.3:72518457-72518476 | MS.gene07798:intron | 25.0% |
| !!! | ATTTTTTGAAGCTCAATATC+CGG | - | chr8.3:72517136-72517155 | MS.gene07798:intron | 25.0% |
| !!! | GTTGAAAGTTATTTTCCTTT+TGG | - | chr8.3:72517075-72517094 | MS.gene07798:intron | 25.0% |
| !!! | TATGGAGGTTTTATTTTGAA+AGG | - | chr8.3:72519386-72519405 | MS.gene07798:intron | 25.0% |
| !!! | TATTGGTTTTAGGTATATGT+GGG | - | chr8.3:72519938-72519957 | MS.gene07798:intron | 25.0% |
| !!! | TTATTGGTTTTAGGTATATG+TGG | - | chr8.3:72519937-72519956 | MS.gene07798:intron | 25.0% |
| !!! | TTATTTTGAAAGGAGTATAG+AGG | - | chr8.3:72519396-72519415 | MS.gene07798:intron | 25.0% |
| ACATAAGAATTATCTGCACT+TGG | - | chr8.3:72517251-72517270 | MS.gene07798:intron | 30.0% | |
| ACCAATGCTAATGACTTATA+TGG | - | chr8.3:72517374-72517393 | MS.gene07798:intron | 30.0% | |
| AGGAAAATAACTTTCAACGA+TGG | + | chr8.3:72517073-72517092 | None:intergenic | 30.0% | |
| CTTTCTTGAAGTTTAGTATC+CGG | - | chr8.3:72518943-72518962 | MS.gene07798:intron | 30.0% | |
| GAAAAGAACTTTCAGAAATG+AGG | + | chr8.3:72517923-72517942 | None:intergenic | 30.0% | |
| GAAAATAACTTTCAACGATG+GGG | + | chr8.3:72517071-72517090 | None:intergenic | 30.0% | |
| GAAACCGAATCATTAAGTTT+GGG | + | chr8.3:72516819-72516838 | None:intergenic | 30.0% | |
| GATGTCAACATAATTGACAA+AGG | + | chr8.3:72519651-72519670 | None:intergenic | 30.0% | |
| GGAAAATAACTTTCAACGAT+GGG | + | chr8.3:72517072-72517091 | None:intergenic | 30.0% | |
| GGTGAGATTGACATTTATAT+TGG | + | chr8.3:72517726-72517745 | None:intergenic | 30.0% | |
| GTAGGATTTGAGTGTATATT+TGG | + | chr8.3:72517755-72517774 | None:intergenic | 30.0% | |
| GTGCAGATAATTCTTATGTT+TGG | + | chr8.3:72517250-72517269 | None:intergenic | 30.0% | |
| TAAGTGCATGTTTGAATTGA+TGG | + | chr8.3:72518507-72518526 | None:intergenic | 30.0% | |
| TACATGCATGTTTGTATTGA+TGG | + | chr8.3:72517593-72517612 | None:intergenic | 30.0% | |
| TCAAACCTAAGATGTATAGA+GGG | - | chr8.3:72519087-72519106 | MS.gene07798:intron | 30.0% | |
| TCATAGCATACCTAAGTTAT+AGG | + | chr8.3:72519215-72519234 | None:intergenic | 30.0% | |
| TCCATAAAAGTCATTAGGAT+TGG | + | chr8.3:72519480-72519499 | None:intergenic | 30.0% | |
| TCCATATAAGTCATTAGCAT+TGG | + | chr8.3:72517378-72517397 | None:intergenic | 30.0% | |
| TGAAACCGAATCATTAAGTT+TGG | + | chr8.3:72516820-72516839 | None:intergenic | 30.0% | |
| TGTAATATGCTTGAGTTCAT+AGG | + | chr8.3:72519436-72519455 | None:intergenic | 30.0% | |
| TGTTTAACTCAATGCATGTT+TGG | - | chr8.3:72517461-72517480 | MS.gene07798:intron | 30.0% | |
| TTAGAGCTTCAACAAAATCA+TGG | + | chr8.3:72517675-72517694 | None:intergenic | 30.0% | |
| TTAGTGTCAGATACTTTCTT+GGG | + | chr8.3:72520284-72520303 | None:intergenic | 30.0% | |
| TTCAAACCTAAGATGTATAG+AGG | - | chr8.3:72519086-72519105 | MS.gene07798:intron | 30.0% | |
| TTGAGTGCATATTGGATTAA+CGG | + | chr8.3:72519817-72519836 | None:intergenic | 30.0% | |
| ! | ACCAATCCTAATGACTTTTA+TGG | - | chr8.3:72519476-72519495 | MS.gene07798:intron | 30.0% |
| ! | TTAATGCATGTTTGGATTAG+CGG | - | chr8.3:72518384-72518403 | MS.gene07798:intron | 30.0% |
| !! | AAACATGGTGTTATAAGAGT+TGG | + | chr8.3:72519342-72519361 | None:intergenic | 30.0% |
| !! | AAACTTAATGATTCGGTTTC+AGG | - | chr8.3:72516819-72516838 | MS.gene07798:CDS | 30.0% |
| !! | AGTTATTTTCCTTTTGGTTG+TGG | - | chr8.3:72517081-72517100 | MS.gene07798:intron | 30.0% |
| !!! | AAACATGCATGTACTGATTT+TGG | - | chr8.3:72517600-72517619 | MS.gene07798:intron | 30.0% |
| !!! | AGTTCTTTTCTTTTTGGTTG+TGG | - | chr8.3:72517933-72517952 | MS.gene07798:intron | 30.0% |
| !!! | GTTTTTTCTTTAATCAGGGT+TGG | - | chr8.3:72518093-72518112 | MS.gene07798:intron | 30.0% |
| AAACAAACATCTCAACCATC+TGG | + | chr8.3:72519141-72519160 | None:intergenic | 35.0% | |
| AACAAACATCTCAACCATCT+GGG | + | chr8.3:72519140-72519159 | None:intergenic | 35.0% | |
| AAGGAATGATGACATTGATG+AGG | - | chr8.3:72520175-72520194 | MS.gene07798:intron | 35.0% | |
| AGGAATGATGACATTGATGA+GGG | - | chr8.3:72520176-72520195 | MS.gene07798:intron | 35.0% | |
| ATCCAAACATGCATTAACTC+AGG | + | chr8.3:72518381-72518400 | None:intergenic | 35.0% | |
| ATGACAAAGAAACTCATGGA+AGG | - | chr8.3:72520156-72520175 | MS.gene07798:intron | 35.0% | |
| ATGGTGAACTAACAAAGTCA+TGG | + | chr8.3:72518488-72518507 | None:intergenic | 35.0% | |
| CAAACCTAAGATGTATAGAG+GGG | - | chr8.3:72519088-72519107 | MS.gene07798:intron | 35.0% | |
| CACTTGCTTCAACAAAATCA+TGG | + | chr8.3:72518593-72518612 | None:intergenic | 35.0% | |
| CTTAGTGTCAGATACTTTCT+TGG | + | chr8.3:72520285-72520304 | None:intergenic | 35.0% | |
| GCATGAGTTTATAGGTTCAA+AGG | + | chr8.3:72517326-72517345 | None:intergenic | 35.0% | |
| GGAACCCAAACTTAATGATT+CGG | - | chr8.3:72516812-72516831 | MS.gene07798:CDS | 35.0% | |
| GTTTATAGGTTCAAAGGCTT+AGG | + | chr8.3:72517320-72517339 | None:intergenic | 35.0% | |
| TACATAAGACCACAACCAAA+AGG | + | chr8.3:72518900-72518919 | None:intergenic | 35.0% | |
| TAGGAATTGTTTGCACTTGA+CGG | - | chr8.3:72519061-72519080 | MS.gene07798:intron | 35.0% | |
| TAGTGTCAGATACTTTCTTG+GGG | + | chr8.3:72520283-72520302 | None:intergenic | 35.0% | |
| TATCAACACGTTCTCTCTTT+CGG | + | chr8.3:72517829-72517848 | None:intergenic | 35.0% | |
| TATGAGCCTAATTCTCGAAT+TGG | - | chr8.3:72519230-72519249 | MS.gene07798:intron | 35.0% | |
| TATTGGATTAACGGTGAGTT+TGG | + | chr8.3:72519808-72519827 | None:intergenic | 35.0% | |
| TCAATGCATGTTTGGATTGA+CGG | - | chr8.3:72517469-72517488 | MS.gene07798:intron | 35.0% | |
| TCATTGCAAGTTTGGATTGT+TGG | - | chr8.3:72519721-72519740 | MS.gene07798:intron | 35.0% | |
| TCCATAAAACCACAACCAAA+AGG | + | chr8.3:72517093-72517112 | None:intergenic | 35.0% | |
| TCTAGGTATACTCACAACTT+AGG | - | chr8.3:72518027-72518046 | MS.gene07798:intron | 35.0% | |
| TGCATTAAGTCAAGCAACTT+AGG | + | chr8.3:72519559-72519578 | None:intergenic | 35.0% | |
| TGCTTGACTTAATGCATGTT+TGG | - | chr8.3:72519563-72519582 | MS.gene07798:intron | 35.0% | |
| TTCCATGAGTTTCTTTGTCA+TGG | + | chr8.3:72520157-72520176 | None:intergenic | 35.0% | |
| TTGCTTCAACAAAATCATGG+TGG | + | chr8.3:72518590-72518609 | None:intergenic | 35.0% | |
| TTGTATTGAAAGGGATATGG+AGG | - | chr8.3:72519371-72519390 | MS.gene07798:intron | 35.0% | |
| ! | AAAGGAGTATAGTCGTATAG+AGG | - | chr8.3:72518211-72518230 | MS.gene07798:intron | 35.0% |
| ! | TATCCAGTTGTTCTCTCTTT+TGG | + | chr8.3:72518718-72518737 | None:intergenic | 35.0% |
| ! | TCTTTGGTTCATTGCAAGTT+TGG | - | chr8.3:72518535-72518554 | MS.gene07798:intron | 35.0% |
| ! | TGGCGAGTTTGACAATTTTA+CGG | - | chr8.3:72519741-72519760 | MS.gene07798:intron | 35.0% |
| ! | TGTATGGACTGATCAAACAT+AGG | - | chr8.3:72519042-72519061 | MS.gene07798:intron | 35.0% |
| ! | TTTTGGTCCATTGCAAGTTT+GGG | - | chr8.3:72517617-72517636 | MS.gene07798:intron | 35.0% |
| !! | AGCATTGGTCTATCATTAAG+AGG | + | chr8.3:72517363-72517382 | None:intergenic | 35.0% |
| !! | ATTTTGGTCCATTGCAAGTT+TGG | - | chr8.3:72517616-72517635 | MS.gene07798:intron | 35.0% |
| !! | CAAGAAAGTATCTGACACTA+AGG | - | chr8.3:72520283-72520302 | MS.gene07798:CDS | 35.0% |
| !! | GTGGTTAGTCTGACAAATTA+CGG | - | chr8.3:72518562-72518581 | MS.gene07798:intron | 35.0% |
| !! | TCCTTTTGGTTGTGGTTTTA+TGG | - | chr8.3:72517089-72517108 | MS.gene07798:intron | 35.0% |
| !! | TCTGTATAAGTTTTCGGGAT+TGG | + | chr8.3:72518293-72518312 | None:intergenic | 35.0% |
| !! | TTGTTCTCTCTTTTGGAGAT+AGG | + | chr8.3:72518711-72518730 | None:intergenic | 35.0% |
| !!! | TTTTGGTTGTGGTCTTATGT+AGG | - | chr8.3:72518899-72518918 | MS.gene07798:intron | 35.0% |
| !!! | TTTTGGTTGTGGTTTTATGG+AGG | - | chr8.3:72517092-72517111 | MS.gene07798:intron | 35.0% |
| AAACATTCTTGAGAGGGCTA+AGG | - | chr8.3:72520091-72520110 | MS.gene07798:intron | 40.0% | |
| AAGAATTATCTGCACTTGGC+AGG | - | chr8.3:72517255-72517274 | MS.gene07798:intron | 40.0% | |
| AAGCTCCAAACATTCTTGAG+AGG | - | chr8.3:72520084-72520103 | MS.gene07798:intron | 40.0% | |
| AATCAGTACAAACTCCTGAC+AGG | - | chr8.3:72518685-72518704 | MS.gene07798:intron | 40.0% | |
| AATCAGTACTAACTCCTGAC+AGG | - | chr8.3:72519856-72519875 | MS.gene07798:intron | 40.0% | |
| ACAAACATCTCAACCATCTG+GGG | + | chr8.3:72519139-72519158 | None:intergenic | 40.0% | |
| AGATACTTTCTTGGGGTGAA+TGG | + | chr8.3:72520276-72520295 | None:intergenic | 40.0% | |
| AGCTCCAAACATTCTTGAGA+GGG | - | chr8.3:72520085-72520104 | MS.gene07798:intron | 40.0% | |
| AGTCAGAGTAAAGCTCTGTA+TGG | - | chr8.3:72517219-72517238 | MS.gene07798:intron | 40.0% | |
| ATCCTGTGAAGCAGATGAAT+CGG | - | chr8.3:72517779-72517798 | MS.gene07798:intron | 40.0% | |
| ATGGGGCTAATTCATGAACT+TGG | - | chr8.3:72518056-72518075 | MS.gene07798:intron | 40.0% | |
| ATTAGGATCTTTGACCCACT+AGG | - | chr8.3:72518001-72518020 | MS.gene07798:intron | 40.0% | |
| CACAGGATTTGAGTGCATAT+TGG | + | chr8.3:72519825-72519844 | None:intergenic | 40.0% | |
| CATCAAATGCACTTAGTGTG+AGG | - | chr8.3:72519690-72519709 | MS.gene07798:intron | 40.0% | |
| CGGGTGTATAATCTAAGCTA+TGG | - | chr8.3:72517010-72517029 | MS.gene07798:CDS | 40.0% | |
| CTCACACTAAGTGCATTTGA+TGG | + | chr8.3:72519692-72519711 | None:intergenic | 40.0% | |
| GAGCTTCAACAAAATCGTAG+TGG | + | chr8.3:72519769-72519788 | None:intergenic | 40.0% | |
| GGTTCATTGCAAGTTTGGAT+TGG | - | chr8.3:72518540-72518559 | MS.gene07798:intron | 40.0% | |
| GTATATCTGAATCGTCTGCT+TGG | + | chr8.3:72519193-72519212 | None:intergenic | 40.0% | |
| TAATTCATGAACTTGGCAGC+AGG | - | chr8.3:72518063-72518082 | MS.gene07798:intron | 40.0% | |
| TCAAACATGCACTTAGTGTG+AGG | - | chr8.3:72518512-72518531 | MS.gene07798:intron | 40.0% | |
| TCTCCAAAAGAGAGAACAAC+TGG | - | chr8.3:72518712-72518731 | MS.gene07798:intron | 40.0% | |
| TCTTCGAAAGAGAGAACATG+TGG | - | chr8.3:72519883-72519902 | MS.gene07798:intron | 40.0% | |
| TGCATTAACTCAGGCAACTT+AGG | + | chr8.3:72518372-72518391 | None:intergenic | 40.0% | |
| TGCCTGAGTTAATGCATGTT+TGG | - | chr8.3:72518376-72518395 | MS.gene07798:intron | 40.0% | |
| TTAGCCCTCTCAAGAATGTT+TGG | + | chr8.3:72520092-72520111 | None:intergenic | 40.0% | |
| TTCAAACCTGAGATGTAGAG+AGG | - | chr8.3:72517279-72517298 | MS.gene07798:intron | 40.0% | |
| TTCATGAATTAGCCCCATAG+CGG | + | chr8.3:72518054-72518073 | None:intergenic | 40.0% | |
| ! | CTATTTGTGGCTCTTGTTTC+TGG | - | chr8.3:72517875-72517894 | MS.gene07798:intron | 40.0% |
| ! | GAGTTGGAGTACTTTCCAAA+TGG | - | chr8.3:72519283-72519302 | MS.gene07798:intron | 40.0% |
| ! | TCATTGCAAGTTTGGATTGG+TGG | - | chr8.3:72518543-72518562 | MS.gene07798:intron | 40.0% |
| !! | CTGATTCATCTGCTTTTCAC+AGG | + | chr8.3:72518671-72518690 | None:intergenic | 40.0% |
| !!! | GATTGGTTTTCCGGATTAGT+CGG | + | chr8.3:72517170-72517189 | None:intergenic | 40.0% |
| !!! | TCTTTTTGGTTGTGGCCTTA+TGG | - | chr8.3:72517941-72517960 | MS.gene07798:intron | 40.0% |
| AATCGGTACAAACTTCCGAC+CGG | - | chr8.3:72517796-72517815 | MS.gene07798:intron | 45.0% | |
| AGAGCTTGAAGCTGTAGTTG+AGG | - | chr8.3:72520250-72520269 | MS.gene07798:intron | 45.0% | |
| AGGACCCCTCTATACATCTT+AGG | + | chr8.3:72519095-72519114 | None:intergenic | 45.0% | |
| ATCTCCATGACTCCTCCATA+AGG | + | chr8.3:72517959-72517978 | None:intergenic | 45.0% | |
| ATGACGTTACAAGGCCTGTT+AGG | + | chr8.3:72519315-72519334 | None:intergenic | 45.0% | |
| CAACTCTTCTAACACCGTGT+TGG | - | chr8.3:72518146-72518165 | MS.gene07798:intron | 45.0% | |
| CATGACTTTCCAAGCCTGTT+AGG | + | chr8.3:72518122-72518141 | None:intergenic | 45.0% | |
| CCAAATGGACAACTCCTAAC+AGG | - | chr8.3:72519298-72519317 | MS.gene07798:intron | 45.0% | |
| CCTAATTCTCGAATTGGCAG+CGG | - | chr8.3:72519236-72519255 | MS.gene07798:intron | 45.0% | |
| CCTGTTAGGAGTTGTCCATT+TGG | + | chr8.3:72519301-72519320 | None:intergenic | 45.0% | |
| CGCCATGACAAAGAAACTCA+TGG | - | chr8.3:72520152-72520171 | MS.gene07798:intron | 45.0% | |
| CTGATTCATCTGCTTGTCAC+AGG | + | chr8.3:72519842-72519861 | None:intergenic | 45.0% | |
| CTGCTTCACAGGATTTGTGT+AGG | + | chr8.3:72517773-72517792 | None:intergenic | 45.0% | |
| CTTCACCCTTTCAAACACAC+CGG | + | chr8.3:72520228-72520247 | None:intergenic | 45.0% | |
| CTTTCGAAGATAGACCTGTC+AGG | + | chr8.3:72519873-72519892 | None:intergenic | 45.0% | |
| GTGGTAGGCTCAATTGAAGT+CGG | - | chr8.3:72519009-72519028 | MS.gene07798:intron | 45.0% | |
| GTGTACCTTATCCTAACTCG+AGG | - | chr8.3:72517696-72517715 | MS.gene07798:intron | 45.0% | |
| GTTGAAGAAGTCAAAGCTCC+CGG | - | chr8.3:72520206-72520225 | MS.gene07798:intron | 45.0% | |
| GTTGGCAACATGACGTTACA+AGG | + | chr8.3:72519324-72519343 | None:intergenic | 45.0% | |
| TACCTTATCCTAACTCGAGG+TGG | - | chr8.3:72517699-72517718 | MS.gene07798:intron | 45.0% | |
| TCAATTGAGCCTACCACTAC+TGG | + | chr8.3:72519006-72519025 | None:intergenic | 45.0% | |
| TCACAACTTAGGTCCGCTAT+GGG | - | chr8.3:72518038-72518057 | MS.gene07798:intron | 45.0% | |
| TCTCTCTTTCGGAGATAGAC+CGG | + | chr8.3:72517818-72517837 | None:intergenic | 45.0% | |
| TGAGTTTCTTTGTCATGGCG+AGG | + | chr8.3:72520152-72520171 | None:intergenic | 45.0% | |
| TGCACTTAGTGTGAGGTCTT+TGG | - | chr8.3:72518519-72518538 | MS.gene07798:intron | 45.0% | |
| TTCACCCTTTCAAACACACC+GGG | + | chr8.3:72520227-72520246 | None:intergenic | 45.0% | |
| ! | AGTATACCTAGAGTGCCTAG+TGG | + | chr8.3:72518019-72518038 | None:intergenic | 45.0% |
| ! | CAACACGGTGTTAGAAGAGT+TGG | + | chr8.3:72518148-72518167 | None:intergenic | 45.0% |
| ! | GTATACCTAGAGTGCCTAGT+GGG | + | chr8.3:72518018-72518037 | None:intergenic | 45.0% |
| !! | AGGATTGGTCTAGTGCTTAG+AGG | + | chr8.3:72519465-72519484 | None:intergenic | 45.0% |
| !! | GTGGTCTTATGTAGGAGACA+TGG | - | chr8.3:72518907-72518926 | MS.gene07798:intron | 45.0% |
| !! | TACCGATTCATCTGCTTCAC+AGG | + | chr8.3:72517784-72517803 | None:intergenic | 45.0% |
| !! | TTTCCGGATTAGTCGGTCTT+AGG | + | chr8.3:72518970-72518989 | None:intergenic | 45.0% |
| !!! | GTGGTTTTATGGAGGAGACA+TGG | - | chr8.3:72517100-72517119 | MS.gene07798:intron | 45.0% |
| !!! | TAGACGGTGGATTGGTTTTC+CGG | + | chr8.3:72517179-72517198 | None:intergenic | 45.0% |
| !!! | TTTTGGTTGTGGCCTTATGG+AGG | - | chr8.3:72517944-72517963 | MS.gene07798:intron | 45.0% |
| AAGCTCCCGGTGTGTTTGAA+AGG | - | chr8.3:72520219-72520238 | MS.gene07798:intron | 50.0% | |
| ACCAATCCACCGTCTACTAG+CGG | - | chr8.3:72517183-72517202 | MS.gene07798:intron | 50.0% | |
| AGCTCCCGGTGTGTTTGAAA+GGG | - | chr8.3:72520220-72520239 | MS.gene07798:intron | 50.0% | |
| AGTCGGAGCAAAGCTCTGTA+TGG | - | chr8.3:72519026-72519045 | MS.gene07798:intron | 50.0% | |
| ATATTGGGCCACCTCGAGTT+AGG | + | chr8.3:72517710-72517729 | None:intergenic | 50.0% | |
| ATCAGGGTTGGACTCCTAAC+AGG | - | chr8.3:72518105-72518124 | MS.gene07798:intron | 50.0% | |
| CACAACTTAGGTCCGCTATG+GGG | - | chr8.3:72518039-72518058 | MS.gene07798:intron | 50.0% | |
| CATTCTTGAGAGGGCTAAGG+AGG | - | chr8.3:72520094-72520113 | MS.gene07798:intron | 50.0% | |
| CCACCAACCCAAACTTGCAA+TGG | + | chr8.3:72517627-72517646 | None:intergenic | 50.0% | |
| CCGCTGCCAATTCGAGAATT+AGG | + | chr8.3:72519239-72519258 | None:intergenic | 50.0% | |
| CGGTGTGTTTGAAAGGGTGA+AGG | - | chr8.3:72520226-72520245 | MS.gene07798:intron | 50.0% | |
| CTCACAACTTAGGTCCGCTA+TGG | - | chr8.3:72518037-72518056 | MS.gene07798:intron | 50.0% | |
| GAAGCTCAATATCCGGTCCT+TGG | - | chr8.3:72517143-72517162 | MS.gene07798:intron | 50.0% | |
| GGTCCATTGCAAGTTTGGGT+TGG | - | chr8.3:72517621-72517640 | MS.gene07798:intron | 50.0% | |
| GGTCCTAAGACCGACTAATC+CGG | - | chr8.3:72518964-72518983 | MS.gene07798:intron | 50.0% | |
| TCTTTCGGAGATAGACCGGT+CGG | + | chr8.3:72517814-72517833 | None:intergenic | 50.0% | |
| TGTGCTCCTCTCTACATCTC+AGG | + | chr8.3:72517288-72517307 | None:intergenic | 50.0% | |
| TTGAACCTCCCGCTAGTAGA+CGG | + | chr8.3:72517195-72517214 | None:intergenic | 50.0% | |
| TTGAGCCTACCACTACTGGA+CGG | + | chr8.3:72519002-72519021 | None:intergenic | 50.0% | |
| TTTGACCCACTAGGCACTCT+AGG | - | chr8.3:72518010-72518029 | MS.gene07798:intron | 50.0% | |
| ! | ACATCTCAACCATCTGGGGT+TGG | + | chr8.3:72519135-72519154 | None:intergenic | 50.0% |
| ! | GTAGAGAGGAGCACACTCTT+AGG | - | chr8.3:72517293-72517312 | MS.gene07798:intron | 50.0% |
| !! | CCATTGCAAGTTTGGGTTGG+TGG | - | chr8.3:72517624-72517643 | MS.gene07798:intron | 50.0% |
| !! | CTTTTGGAGATAGGCCTGTC+AGG | + | chr8.3:72518702-72518721 | None:intergenic | 50.0% |
| !! | GGATTAGTCGGTCTTAGGAC+CGG | + | chr8.3:72518965-72518984 | None:intergenic | 50.0% |
| !! | TTTCCGGATTAGTCGGTCCA+AGG | + | chr8.3:72517163-72517182 | None:intergenic | 50.0% |
| !!! | TGGACGGTGGATTGGTTTTC+CGG | + | chr8.3:72518986-72519005 | None:intergenic | 50.0% |
| ACCAATCCACCGTCCAGTAG+TGG | - | chr8.3:72518990-72519009 | MS.gene07798:intron | 55.0% | |
| ACCACTACTGGACGGTGGAT+TGG | + | chr8.3:72518994-72519013 | None:intergenic | 55.0% | |
| ATCCACCGTCCAGTAGTGGT+AGG | - | chr8.3:72518994-72519013 | MS.gene07798:intron | 55.0% | |
| CCAATCCACCGTCTACTAGC+GGG | - | chr8.3:72517184-72517203 | MS.gene07798:intron | 55.0% | |
| GGCCACCTCGAGTTAGGATA+AGG | + | chr8.3:72517704-72517723 | None:intergenic | 55.0% | |
| GGTCCTTGGACCGACTAATC+CGG | - | chr8.3:72517157-72517176 | MS.gene07798:intron | 55.0% | |
| GGTTGGACTCCTAACAGGCT+TGG | - | chr8.3:72518110-72518129 | MS.gene07798:intron | 55.0% | |
| !! | GATTGGTCTCGTGCTGAGAG+AGG | + | chr8.3:72518276-72518295 | None:intergenic | 55.0% |
| !! | GGATTAGTCGGTCCAAGGAC+CGG | + | chr8.3:72517158-72517177 | None:intergenic | 55.0% |
| !! | GTGGCCTTATGGAGGAGTCA+TGG | - | chr8.3:72517952-72517971 | MS.gene07798:intron | 55.0% |
| AACCTCCCGCTAGTAGACGG+TGG | + | chr8.3:72517192-72517211 | None:intergenic | 60.0% | |
| AGCCTACCACTACTGGACGG+TGG | + | chr8.3:72518999-72519018 | None:intergenic | 60.0% | |
| ATCCACCGTCTACTAGCGGG+AGG | - | chr8.3:72517187-72517206 | MS.gene07798:intron | 60.0% | |
| CCCGCTAGTAGACGGTGGAT+TGG | + | chr8.3:72517187-72517206 | None:intergenic | 60.0% | |
| GAGGGCTAAGGAGGAGACTG+AGG | - | chr8.3:72520103-72520122 | MS.gene07798:intron | 60.0% | |
| GGTCCTAAGCCTTCACCTCC+AGG | - | chr8.3:72519109-72519128 | MS.gene07798:intron | 60.0% | |
| TGGCCTGGAGGTGAAGGCTT+AGG | + | chr8.3:72519115-72519134 | None:intergenic | 60.0% | |
| !! | TCAACCATCTGGGGTTGGCC+TGG | + | chr8.3:72519130-72519149 | None:intergenic | 60.0% |
| ACCTCCAGGCCAACCCCAGA+TGG | - | chr8.3:72519123-72519142 | MS.gene07798:intron | 65.0% | |
| !! | ACCATCTGGGGTTGGCCTGG+AGG | + | chr8.3:72519127-72519146 | None:intergenic | 65.0% |
| !! | TGGGGTTGGCCTGGAGGTGA+AGG | + | chr8.3:72519121-72519140 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 72516801 | 72520322 | 72516801 | ID=MS.gene07798 |
| chr8.3 | mRNA | 72516801 | 72520322 | 72516801 | ID=MS.gene07798.t1;Parent=MS.gene07798 |
| chr8.3 | exon | 72520283 | 72520322 | 72520283 | ID=MS.gene07798.t1.exon1;Parent=MS.gene07798.t1 |
| chr8.3 | CDS | 72520283 | 72520322 | 72520283 | ID=cds.MS.gene07798.t1;Parent=MS.gene07798.t1 |
| chr8.3 | exon | 72516801 | 72517051 | 72516801 | ID=MS.gene07798.t1.exon2;Parent=MS.gene07798.t1 |
| chr8.3 | CDS | 72516801 | 72517051 | 72516801 | ID=cds.MS.gene07798.t1;Parent=MS.gene07798.t1 |
| Gene Sequence |
| Protein sequence |
