Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09151.t1 | RHN42369.1 | 95.3 | 895 | 34 | 2 | 1 | 895 | 73 | 959 | 0.00E+00 | 1626.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09151.t1 | Q9CAC4 | 36.3 | 672 | 274 | 26 | 235 | 895 | 221 | 749 | 1.2e-62 | 243.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09151.t1 | A0A396GMJ9 | 95.3 | 895 | 34 | 2 | 1 | 895 | 73 | 959 | 0.0e+00 | 1626.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene09151 | 0.812084 | 5.06E-51 | -1.69E-46 |
| MS.gene049227 | MS.gene09151 | 0.804479 | 2.12E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene09151 | 0.816181 | 6.31E-52 | -1.69E-46 |
| MS.gene049744 | MS.gene09151 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene09151 | 0.805423 | 1.34E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene09151 | 0.801524 | 8.65E-49 | -1.69E-46 |
| MS.gene050224 | MS.gene09151 | 0.805621 | 1.22E-49 | -1.69E-46 |
| MS.gene050238 | MS.gene09151 | 0.822372 | 2.45E-53 | -1.69E-46 |
| MS.gene050257 | MS.gene09151 | 0.811878 | 5.62E-51 | -1.69E-46 |
| MS.gene050258 | MS.gene09151 | 0.813723 | 2.22E-51 | -1.69E-46 |
| MS.gene050348 | MS.gene09151 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene09151 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene09151 | 0.806637 | 7.47E-50 | -1.69E-46 |
| MS.gene050657 | MS.gene09151 | 0.800877 | 1.17E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene09151 | 0.828899 | 6.95E-55 | -1.69E-46 |
| MS.gene051800 | MS.gene09151 | 0.804351 | 2.25E-49 | -1.69E-46 |
| MS.gene051823 | MS.gene09151 | 0.80217 | 6.37E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene09151 | 0.848117 | 7.52E-60 | -1.69E-46 |
| MS.gene052037 | MS.gene09151 | 0.801143 | 1.03E-48 | -1.69E-46 |
| MS.gene052118 | MS.gene09151 | 0.828044 | 1.12E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene09151 | 0.833467 | 5.24E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene09151 | 0.809165 | 2.16E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene09151 | 0.835536 | 1.58E-56 | -1.69E-46 |
| MS.gene052681 | MS.gene09151 | 0.802721 | 4.91E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene09151 | 0.83358 | 4.91E-56 | -1.69E-46 |
| MS.gene054489 | MS.gene09151 | 0.81053 | 1.10E-50 | -1.69E-46 |
| MS.gene05454 | MS.gene09151 | 0.818191 | 2.23E-52 | -1.69E-46 |
| MS.gene054641 | MS.gene09151 | 0.869121 | 3.93E-66 | -1.69E-46 |
| MS.gene054892 | MS.gene09151 | 0.817562 | 3.09E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene09151 | 0.815077 | 1.11E-51 | -1.69E-46 |
| MS.gene05539 | MS.gene09151 | 0.814975 | 1.17E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene09151 | 0.810275 | 1.25E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene09151 | 0.812099 | 5.03E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene09151 | 0.817853 | 2.66E-52 | -1.69E-46 |
| MS.gene056677 | MS.gene09151 | 0.817539 | 3.13E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene09151 | 0.830726 | 2.50E-55 | -1.69E-46 |
| MS.gene057174 | MS.gene09151 | 0.800196 | 1.61E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene09151 | 0.823432 | 1.39E-53 | -1.69E-46 |
| MS.gene058289 | MS.gene09151 | 0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene09151 | 0.803759 | 2.99E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene09151 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene09151 | 0.814324 | 1.63E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene09151 | 0.81016 | 1.32E-50 | -1.69E-46 |
| MS.gene059634 | MS.gene09151 | 0.805493 | 1.30E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene09151 | 0.815702 | 8.07E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene09151 | 0.838859 | 2.24E-57 | -1.69E-46 |
| MS.gene06052 | MS.gene09151 | 0.834759 | 2.49E-56 | -1.69E-46 |
| MS.gene060785 | MS.gene09151 | 0.851745 | 7.27E-61 | -1.69E-46 |
| MS.gene060933 | MS.gene09151 | 0.812826 | 3.49E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene09151 | 0.833293 | 5.80E-56 | -1.69E-46 |
| MS.gene061188 | MS.gene09151 | 0.804262 | 2.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09151.t1 | MTR_5g078300 | 48.319 | 476 | 197 | 16 | 439 | 890 | 519 | 969 | 2.87e-94 | 319 |
| MS.gene09151.t1 | MTR_1g070350 | 30.864 | 405 | 233 | 9 | 497 | 888 | 496 | 866 | 1.35e-34 | 142 |
| MS.gene09151.t1 | MTR_7g115350 | 39.773 | 264 | 126 | 7 | 471 | 720 | 481 | 725 | 5.69e-32 | 134 |
| MS.gene09151.t1 | MTR_0168s0060 | 48.592 | 142 | 71 | 1 | 490 | 631 | 290 | 429 | 2.43e-22 | 102 |
| MS.gene09151.t1 | MTR_7g107000 | 44.231 | 104 | 58 | 0 | 536 | 639 | 70 | 173 | 4.14e-17 | 85.9 |
| MS.gene09151.t1 | MTR_4g011540 | 50.515 | 97 | 48 | 0 | 536 | 632 | 289 | 385 | 4.44e-16 | 82.4 |
| MS.gene09151.t1 | MTR_4g011550 | 50.549 | 91 | 45 | 0 | 540 | 630 | 281 | 371 | 6.89e-16 | 82.4 |
| MS.gene09151.t1 | MTR_4g107310 | 56.863 | 102 | 44 | 0 | 530 | 631 | 326 | 427 | 4.43e-15 | 79.3 |
| MS.gene09151.t1 | MTR_4g093150 | 38.000 | 100 | 62 | 0 | 536 | 635 | 76 | 175 | 1.07e-14 | 74.3 |
| MS.gene09151.t1 | MTR_1g054835 | 39.423 | 104 | 63 | 0 | 536 | 639 | 65 | 168 | 2.33e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09151.t1 | AT1G70750 | 40.828 | 676 | 238 | 27 | 235 | 895 | 221 | 749 | 1.44e-102 | 336 |
| MS.gene09151.t1 | AT5G16720 | 43.765 | 409 | 164 | 11 | 488 | 885 | 310 | 663 | 4.57e-77 | 265 |
| MS.gene09151.t1 | AT2G30690 | 57.724 | 123 | 50 | 2 | 521 | 643 | 602 | 722 | 4.50e-29 | 125 |
| MS.gene09151.t1 | AT2G30690 | 57.724 | 123 | 50 | 2 | 521 | 643 | 602 | 722 | 4.50e-29 | 125 |
| MS.gene09151.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 500 | 732 | 862 | 1089 | 1.28e-28 | 124 |
| MS.gene09151.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 500 | 732 | 862 | 1089 | 1.28e-28 | 124 |
| MS.gene09151.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 500 | 732 | 862 | 1089 | 1.28e-28 | 124 |
| MS.gene09151.t1 | AT1G08800 | 41.423 | 239 | 123 | 6 | 500 | 732 | 862 | 1089 | 1.28e-28 | 124 |
| MS.gene09151.t1 | AT1G74830 | 62.136 | 103 | 39 | 0 | 529 | 631 | 298 | 400 | 3.01e-26 | 114 |
| MS.gene09151.t1 | AT1G18990 | 64.356 | 101 | 36 | 0 | 529 | 629 | 297 | 397 | 1.11e-23 | 106 |
| MS.gene09151.t1 | AT4G13630 | 47.541 | 122 | 59 | 1 | 520 | 636 | 204 | 325 | 1.60e-20 | 97.1 |
| MS.gene09151.t1 | AT4G13630 | 47.541 | 122 | 59 | 1 | 520 | 636 | 204 | 325 | 1.60e-20 | 97.1 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 5 | 178 | 5.98e-19 | 90.5 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 5 | 178 | 5.98e-19 | 90.5 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 5 | 178 | 5.98e-19 | 90.5 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 5 | 178 | 5.98e-19 | 90.5 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 53 | 226 | 7.08e-19 | 90.9 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 53 | 226 | 7.08e-19 | 90.9 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 53 | 226 | 7.08e-19 | 90.9 |
| MS.gene09151.t1 | AT3G54740 | 37.430 | 179 | 95 | 4 | 510 | 676 | 53 | 226 | 7.08e-19 | 90.9 |
| MS.gene09151.t1 | AT1G04890 | 49.123 | 114 | 56 | 1 | 517 | 630 | 97 | 208 | 4.75e-18 | 88.2 |
| MS.gene09151.t1 | AT4G13160 | 54.255 | 94 | 43 | 0 | 536 | 629 | 117 | 210 | 2.52e-16 | 80.9 |
| MS.gene09151.t1 | AT5G06560 | 38.710 | 124 | 69 | 1 | 533 | 649 | 71 | 194 | 2.56e-16 | 83.6 |
| MS.gene09151.t1 | AT4G30830 | 41.237 | 97 | 57 | 0 | 536 | 632 | 18 | 114 | 5.10e-12 | 68.9 |
| MS.gene09151.t1 | AT4G30830 | 41.237 | 97 | 57 | 0 | 536 | 632 | 18 | 114 | 5.10e-12 | 68.9 |
Find 139 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCATTCTATGAACATTT+TGG | 0.131796 | 4.4:+17225490 | MS.gene09151:CDS |
| GGTGGTGGAGGAAGGGTTTA+AGG | 0.150734 | 4.4:+17226018 | MS.gene09151:CDS |
| ATTGAGAATTGGCACATTTC+TGG | 0.155393 | 4.4:+17226100 | MS.gene09151:CDS |
| TGAGAAAGTTTGACATAATT+TGG | 0.160478 | 4.4:-17225314 | None:intergenic |
| GATTTCCAAGGTCATGTAAA+TGG | 0.210463 | 4.4:+17227811 | MS.gene09151:CDS |
| ATGTGCCAATTCTCAATTAA+TGG | 0.212111 | 4.4:-17226094 | None:intergenic |
| CTTCAACATTATCATGCTTA+TGG | 0.213927 | 4.4:-17226240 | None:intergenic |
| TGCTGTTGAGATTTCCAAAT+TGG | 0.222106 | 4.4:+17225214 | MS.gene09151:CDS |
| GAATCCACTGCCACAGAAAA+TGG | 0.228593 | 4.4:+17225974 | MS.gene09151:CDS |
| ATTGGAACAGAAAACCAATT+TGG | 0.241967 | 4.4:-17225228 | None:intergenic |
| TAACCATATGCCTTCATCTT+TGG | 0.254980 | 4.4:+17226946 | MS.gene09151:CDS |
| TGTAGATGCTGTGTTATATT+TGG | 0.255018 | 4.4:+17227600 | MS.gene09151:CDS |
| TTCAGCTGAAAAGACCAATT+TGG | 0.270275 | 4.4:+17227990 | MS.gene09151:CDS |
| GATCTTTACAAGCTTGAATT+TGG | 0.276454 | 4.4:+17225764 | MS.gene09151:CDS |
| GACCAATTTGGATAACAAAA+AGG | 0.301928 | 4.4:+17228002 | MS.gene09151:CDS |
| TTTGAGGTTGAACATGATTC+AGG | 0.302213 | 4.4:+17225668 | MS.gene09151:CDS |
| TCATTGGATGGAAGTGTAAT+AGG | 0.334923 | 4.4:+17227085 | MS.gene09151:CDS |
| AATCATTGCCATTGTTTGAT+TGG | 0.338660 | 4.4:-17227230 | None:intergenic |
| AAACAATGGCAATGATTAAC+AGG | 0.343697 | 4.4:+17227236 | MS.gene09151:CDS |
| AAGGAAATAGATATGATTAA+TGG | 0.355425 | 4.4:+17225362 | MS.gene09151:CDS |
| TTATGAGAGACTACAAGTTT+TGG | 0.357126 | 4.4:+17228053 | MS.gene09151:CDS |
| CAAGAATCAAAAGAAGAAAA+TGG | 0.358623 | 4.4:+17227553 | MS.gene09151:CDS |
| TTCAGCTAGTTTGTGATGAT+TGG | 0.359303 | 4.4:-17225246 | None:intergenic |
| TGATCATCATCCTGAGCCTT+TGG | 0.368054 | 4.4:-17225839 | None:intergenic |
| TCATTGAGAAAAGGGGATAA+AGG | 0.370415 | 4.4:+17228111 | MS.gene09151:CDS |
| CCAATTCTCAATTAATGGTT+CGG | 0.375649 | 4.4:-17226089 | None:intergenic |
| CAGTTTGATTCCTGTTGAAT+TGG | 0.375927 | 4.4:+17225949 | MS.gene09151:CDS |
| CCGAACCATTAATTGAGAAT+TGG | 0.389801 | 4.4:+17226089 | MS.gene09151:CDS |
| CTTGAATTTGGTGTAAAGAA+AGG | 0.400903 | 4.4:+17225776 | MS.gene09151:CDS |
| TCATCCATTTGTTCATGATC+AGG | 0.416480 | 4.4:-17226504 | None:intergenic |
| TATGAAGCAGAAGTATCAAT+TGG | 0.425288 | 4.4:+17226471 | MS.gene09151:CDS |
| CAGCATCTACAGGAGTGTTC+TGG | 0.425690 | 4.4:-17227588 | None:intergenic |
| TCCGGAGAAGTCGGTGTGTC+GGG | 0.425794 | 4.4:-17226998 | None:intergenic |
| TCAAGGCCAGGATATTCTTT+CGG | 0.427039 | 4.4:+17226530 | MS.gene09151:CDS |
| TGATGGTGTCAAGGAAACTA+TGG | 0.430020 | 4.4:+17225736 | MS.gene09151:CDS |
| CATTGAGAAAAGGGGATAAA+GGG | 0.434221 | 4.4:+17228112 | MS.gene09151:CDS |
| TACAACATCTACGTGATTTG+AGG | 0.434349 | 4.4:+17228157 | MS.gene09151:CDS |
| CAAATCCATTTACATGACCT+TGG | 0.434429 | 4.4:-17227816 | None:intergenic |
| TTGAATTTGGTGTAAAGAAA+GGG | 0.435192 | 4.4:+17225777 | MS.gene09151:CDS |
| AACATCTTCGTGAAGAGAAC+GGG | 0.438917 | 4.4:+17227752 | MS.gene09151:CDS |
| GTATCAGCTCATTGAGAAAA+GGG | 0.444188 | 4.4:+17228103 | MS.gene09151:CDS |
| TGTGATAAGGTGGTGGAGGA+AGG | 0.445212 | 4.4:+17226010 | MS.gene09151:CDS |
| CTAGGTTCATATGTTTCTCT+AGG | 0.445875 | 4.4:+17226304 | MS.gene09151:CDS |
| GTCAGGAACAGAAGATTCAT+TGG | 0.455379 | 4.4:+17227069 | MS.gene09151:CDS |
| GGGAATTGAGAAAGTTGAAG+AGG | 0.456395 | 4.4:+17225397 | MS.gene09151:CDS |
| GGTTGGTTTAGAAGAGGAGG+TGG | 0.457431 | 4.4:+17228023 | MS.gene09151:CDS |
| GTGGATTCAACCAATTCAAC+AGG | 0.460558 | 4.4:-17225959 | None:intergenic |
| CATGTAAATGGATTTGCAAA+TGG | 0.462247 | 4.4:+17227823 | MS.gene09151:CDS |
| ACTCAACTCTACATCTTCTT+CGG | 0.465186 | 4.4:-17227926 | None:intergenic |
| AGGCTTACCACTATCATGTT+GGG | 0.473913 | 4.4:-17226607 | None:intergenic |
| AATGGATTTGCAAATGGTAA+TGG | 0.475509 | 4.4:+17227829 | MS.gene09151:CDS |
| TGTATCAGCTCATTGAGAAA+AGG | 0.475886 | 4.4:+17228102 | MS.gene09151:CDS |
| CATAGCCTCTTGATCGTACT+CGG | 0.476563 | 4.4:-17227326 | None:intergenic |
| ATATCTATTTCCTTCATCCA+TGG | 0.485123 | 4.4:-17225353 | None:intergenic |
| GCTCCAAAGATGAAGGCATA+TGG | 0.485262 | 4.4:-17226949 | None:intergenic |
| TCTCAAAGTTTCCTCTTCCA+AGG | 0.486049 | 4.4:-17225807 | None:intergenic |
| AATTCCTGATCATGAACAAA+TGG | 0.488142 | 4.4:+17226500 | MS.gene09151:CDS |
| ACTAGAACAGCTGAAAGTAT+TGG | 0.499006 | 4.4:+17227663 | MS.gene09151:CDS |
| GAATGATCTTATATTGAAGA+GGG | 0.501695 | 4.4:+17227357 | MS.gene09151:CDS |
| CATTCTTAATTCAAGTGACA+TGG | 0.503402 | 4.4:-17226912 | None:intergenic |
| TGTGCTTGTTCTGTTTGTGA+TGG | 0.503760 | 4.4:+17225719 | MS.gene09151:CDS |
| TGGAATTCATATGTTGTTTG+AGG | 0.507732 | 4.4:+17225652 | MS.gene09151:CDS |
| GGAATTGAGAAAGTTGAAGA+GGG | 0.509648 | 4.4:+17225398 | MS.gene09151:CDS |
| AACATGGAAAGAATGATGAA+TGG | 0.512778 | 4.4:+17226265 | MS.gene09151:CDS |
| TGATTCAACCTCATTGACCT+TGG | 0.513718 | 4.4:-17226167 | None:intergenic |
| GAACAAATGGATGAGTATCA+AGG | 0.515576 | 4.4:+17226513 | MS.gene09151:CDS |
| AAATCAAAATAGATGTGATA+AGG | 0.515683 | 4.4:+17225997 | MS.gene09151:CDS |
| TTTAATGCCCAACATGATAG+TGG | 0.517123 | 4.4:+17226600 | MS.gene09151:CDS |
| ATTCATCTACTAGCTCAGTC+AGG | 0.517217 | 4.4:+17226577 | MS.gene09151:CDS |
| TTTCTCGAGAGGAAAGGGTC+AGG | 0.520344 | 4.4:+17227052 | MS.gene09151:CDS |
| GGCATATGGTTACTTGCTGT+TGG | 0.523409 | 4.4:-17226935 | None:intergenic |
| GAGGCTTACCACTATCATGT+TGG | 0.523454 | 4.4:-17226608 | None:intergenic |
| AAATATAACACAGCATCTAC+AGG | 0.525131 | 4.4:-17227598 | None:intergenic |
| TTTGAGATTGAATGTTCCAA+AGG | 0.527554 | 4.4:+17225823 | MS.gene09151:CDS |
| TAGATGTGATAAGGTGGTGG+AGG | 0.527709 | 4.4:+17226006 | MS.gene09151:CDS |
| ATTGAATGTTCCAAAGGCTC+AGG | 0.527773 | 4.4:+17225829 | MS.gene09151:CDS |
| AGGGAATGAAACCTTGGAAG+AGG | 0.530134 | 4.4:+17225796 | MS.gene09151:CDS |
| ATTAATGGTGCTGATGGAAA+GGG | 0.530637 | 4.4:+17225377 | MS.gene09151:CDS |
| TCCCGACACACCGACTTCTC+CGG | 0.530703 | 4.4:+17226997 | MS.gene09151:CDS |
| TGTAGTTGATGAAGACTCTC+CGG | 0.531114 | 4.4:-17227016 | None:intergenic |
| CTTCGTGAAGAGAACGGGAA+TGG | 0.531529 | 4.4:+17227757 | MS.gene09151:CDS |
| GGAATGTGGAACTCAGAGTC+AGG | 0.532375 | 4.4:+17228178 | MS.gene09151:CDS |
| CTCCGGAGAAGTCGGTGTGT+CGG | 0.535211 | 4.4:-17226999 | None:intergenic |
| CGCATTGAAATCTGAAAGGA+AGG | 0.536176 | 4.4:+17227150 | MS.gene09151:CDS |
| TTCTGTTTGTGATGGTGTCA+AGG | 0.536392 | 4.4:+17225727 | MS.gene09151:CDS |
| GATATGATTAATGGTGCTGA+TGG | 0.537087 | 4.4:+17225371 | MS.gene09151:CDS |
| TCCTCAGCGTTGCTACAAGA+AGG | 0.546661 | 4.4:-17227502 | None:intergenic |
| GTGATAAGGTGGTGGAGGAA+GGG | 0.547154 | 4.4:+17226011 | MS.gene09151:CDS |
| TCAAAATAGATGTGATAAGG+TGG | 0.548904 | 4.4:+17226000 | MS.gene09151:CDS |
| GGAACAGAAGATTCATTGGA+TGG | 0.549334 | 4.4:+17227073 | MS.gene09151:CDS |
| GATTAATGGTGCTGATGGAA+AGG | 0.550398 | 4.4:+17225376 | MS.gene09151:CDS |
| AATGGATGAGTATCAAGGCC+AGG | 0.550806 | 4.4:+17226518 | MS.gene09151:CDS |
| ATGTGGTGACGTGACCTTCG+AGG | 0.551592 | 4.4:+17227117 | MS.gene09151:CDS |
| TGAATGATCTTATATTGAAG+AGG | 0.551934 | 4.4:+17227356 | MS.gene09151:CDS |
| AGAGAAAGCAGCAATGCAGA+TGG | 0.554976 | 4.4:+17227267 | MS.gene09151:CDS |
| GAACATCTTCGTGAAGAGAA+CGG | 0.557301 | 4.4:+17227751 | MS.gene09151:CDS |
| TCATTAAGCTCCAAAGATGA+AGG | 0.560251 | 4.4:-17226956 | None:intergenic |
| GAACTCAGAGTCAGGAACAT+AGG | 0.561039 | 4.4:+17228186 | MS.gene09151:CDS |
| AAATAGATGTGATAAGGTGG+TGG | 0.561586 | 4.4:+17226003 | MS.gene09151:CDS |
| ATATTGAATTATGAAGATGA+AGG | 0.565833 | 4.4:+17227700 | MS.gene09151:CDS |
| GGAGCTTAATGAGAATGAAG+AGG | 0.572531 | 4.4:+17226967 | MS.gene09151:CDS |
| AAAGAAAGGGAATGAAACCT+TGG | 0.573374 | 4.4:+17225790 | MS.gene09151:CDS |
| AAAGGTTGGTTTAGAAGAGG+AGG | 0.574199 | 4.4:+17228020 | MS.gene09151:CDS |
| AAGCAGAACATGATCAAAGA+AGG | 0.576841 | 4.4:+17225533 | MS.gene09151:CDS |
| TCATCAAGGAAGGAAAGTCT+TGG | 0.580300 | 4.4:+17227858 | MS.gene09151:CDS |
| GAATGATCAATAACAATGCA+AGG | 0.581504 | 4.4:-17225476 | None:intergenic |
| AGATGCTGTGTTATATTTGG+AGG | 0.584225 | 4.4:+17227603 | MS.gene09151:CDS |
| TTGTATCCGAAAGAATATCC+TGG | 0.587704 | 4.4:-17226536 | None:intergenic |
| GGTAATGGAAAGCATCATCA+AGG | 0.588406 | 4.4:+17227844 | MS.gene09151:CDS |
| GCACATTTCTGGTGATATTG+TGG | 0.590921 | 4.4:+17226111 | MS.gene09151:CDS |
| ATGGAAAGCATCATCAAGGA+AGG | 0.594579 | 4.4:+17227848 | MS.gene09151:CDS |
| GATCAATAACAATGCAAGGA+GGG | 0.594685 | 4.4:-17225472 | None:intergenic |
| GAAGAAGATGTAGAGTTGAG+TGG | 0.596653 | 4.4:+17227928 | MS.gene09151:CDS |
| TGAAGACTCTCCGGAGAAGT+CGG | 0.598220 | 4.4:-17227007 | None:intergenic |
| GGTTTGAGATGTTCTTGCTG+TGG | 0.598600 | 4.4:+17225419 | MS.gene09151:CDS |
| TGATAATGTTGAAGTAAACA+TGG | 0.598835 | 4.4:+17226249 | MS.gene09151:CDS |
| GACGATCATGATGATTTCCA+AGG | 0.606183 | 4.4:+17227799 | MS.gene09151:CDS |
| TCTACGTGATTTGAGGAATG+TGG | 0.613878 | 4.4:+17228164 | MS.gene09151:CDS |
| AGCAACGCTGAGGATAGTGA+TGG | 0.616923 | 4.4:+17227511 | MS.gene09151:CDS |
| ACAATCCGAGTACGATCAAG+AGG | 0.619408 | 4.4:+17227321 | MS.gene09151:CDS |
| AATCCGCATTGAAATCTGAA+AGG | 0.619756 | 4.4:+17227146 | MS.gene09151:CDS |
| TTTGCAGTATCAGAGAATGA+TGG | 0.624136 | 4.4:+17227294 | MS.gene09151:CDS |
| AAATGTGTCCAAGGTCAATG+AGG | 0.633487 | 4.4:+17226159 | MS.gene09151:CDS |
| ATCACAAACTCATGGTGAGG+AGG | 0.640183 | 4.4:+17226446 | MS.gene09151:CDS |
| CAGGAACATAGGAGATCTTG+CGG | 0.643584 | 4.4:+17228197 | MS.gene09151:CDS |
| TATCAGCTCATTGAGAAAAG+GGG | 0.648271 | 4.4:+17228104 | MS.gene09151:CDS |
| TCCTTCTTGTAGCAACGCTG+AGG | 0.650250 | 4.4:+17227501 | MS.gene09151:CDS |
| TGCATCACAAACTCATGGTG+AGG | 0.653414 | 4.4:+17226443 | MS.gene09151:CDS |
| GATGATGCATCACAAACTCA+TGG | 0.657180 | 4.4:+17226438 | MS.gene09151:CDS |
| TCACACACAAGATCTCTACA+AGG | 0.661299 | 4.4:-17225185 | None:intergenic |
| GTAATAGGCGACATAGAATG+TGG | 0.664054 | 4.4:+17227100 | MS.gene09151:CDS |
| CAAAACATTGAAGAAAACAG+TGG | 0.667489 | 4.4:+17225632 | MS.gene09151:CDS |
| TGATCAATAACAATGCAAGG+AGG | 0.675124 | 4.4:-17225473 | None:intergenic |
| TCTTGGCTACTAAAGCAAAG+AGG | 0.677057 | 4.4:+17227875 | MS.gene09151:CDS |
| TGTAGCAGCCAATCAAACAA+TGG | 0.682068 | 4.4:+17227222 | MS.gene09151:CDS |
| TGTTGAAGTTGAGAAAACTG+AGG | 0.695566 | 4.4:+17225880 | MS.gene09151:CDS |
| CTTCCTTTCAGATTTCAATG+CGG | 0.713730 | 4.4:-17227149 | None:intergenic |
| GCAACGCTGAGGATAGTGAT+GGG | 0.723560 | 4.4:+17227512 | MS.gene09151:CDS |
| TGAATCAGATGATATGTGTG+AGG | 0.729118 | 4.4:+17225265 | MS.gene09151:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAATATATAAAATGAG+TGG | - | chr4.4:17226357-17226376 | None:intergenic | 15.0% |
| !! | AAAATTTGCAATGTGTAATT+AGG | + | chr4.4:17226851-17226870 | MS.gene09151:intron | 20.0% |
| !! | AAATCAAAATAGATGTGATA+AGG | + | chr4.4:17225997-17226016 | MS.gene09151:CDS | 20.0% |
| !! | AAGGAAATAGATATGATTAA+TGG | + | chr4.4:17225362-17225381 | MS.gene09151:CDS | 20.0% |
| !! | ATATTGAATTATGAAGATGA+AGG | + | chr4.4:17227700-17227719 | MS.gene09151:CDS | 20.0% |
| !! | ATGAAAAATTCAAGATGTTT+AGG | - | chr4.4:17225914-17225933 | None:intergenic | 20.0% |
| !!! | TAATTAGAAAGTTCTAAACA+TGG | - | chr4.4:17226795-17226814 | None:intergenic | 20.0% |
| ! | AAAAATTCAAGATGTTTAGG+TGG | - | chr4.4:17225911-17225930 | None:intergenic | 25.0% |
| ! | AAAAGGAAGACAATAAATTG+AGG | - | chr4.4:17226630-17226649 | None:intergenic | 25.0% |
| ! | AATTTGGATAACAAAAAGGT+TGG | + | chr4.4:17228006-17228025 | MS.gene09151:CDS | 25.0% |
| ! | CAAGAATCAAAAGAAGAAAA+TGG | + | chr4.4:17227553-17227572 | MS.gene09151:CDS | 25.0% |
| ! | GAATGATCTTATATTGAAGA+GGG | + | chr4.4:17227357-17227376 | MS.gene09151:CDS | 25.0% |
| ! | GCTTGAAGTATATAGAAAAA+AGG | + | chr4.4:17227408-17227427 | MS.gene09151:CDS | 25.0% |
| ! | TACATTTGCCAACATTATAA+AGG | - | chr4.4:17226706-17226725 | None:intergenic | 25.0% |
| ! | TGAATGATCTTATATTGAAG+AGG | + | chr4.4:17227356-17227375 | MS.gene09151:CDS | 25.0% |
| ! | TGAGAAAGTTTGACATAATT+TGG | - | chr4.4:17225317-17225336 | None:intergenic | 25.0% |
| !! | AAAGTTTAGATGTTTTTCCA+TGG | + | chr4.4:17225336-17225355 | MS.gene09151:CDS | 25.0% |
| !! | CATCTTGAATTTTTCATTCA+TGG | + | chr4.4:17225917-17225936 | MS.gene09151:CDS | 25.0% |
| !! | GAAGATTTTATTCTGGATTT+TGG | + | chr4.4:17226046-17226065 | MS.gene09151:CDS | 25.0% |
| !! | TGATAATGTTGAAGTAAACA+TGG | + | chr4.4:17226249-17226268 | MS.gene09151:CDS | 25.0% |
| !! | TGATCATTCTATGAACATTT+TGG | + | chr4.4:17225490-17225509 | MS.gene09151:CDS | 25.0% |
| !!! | AACCTTTTTGTTATCCAAAT+TGG | - | chr4.4:17228007-17228026 | None:intergenic | 25.0% |
| !!! | AATTGAATTTTCAAGATGTG+AGG | + | chr4.4:17226194-17226213 | MS.gene09151:CDS | 25.0% |
| !!! | ATGATGAATGGATATTTTGA+TGG | + | chr4.4:17226277-17226296 | MS.gene09151:CDS | 25.0% |
| !!! | ATTTTGATTTCCATTTTCTG+TGG | - | chr4.4:17225987-17226006 | None:intergenic | 25.0% |
| !!! | CCTCTAAAACATTTTTATTG+GGG | + | chr4.4:17226756-17226775 | MS.gene09151:intron | 25.0% |
| !!! | GCCTCTAAAACATTTTTATT+GGG | + | chr4.4:17226755-17226774 | MS.gene09151:intron | 25.0% |
| !!! | TGCCTCTAAAACATTTTTAT+TGG | + | chr4.4:17226754-17226773 | MS.gene09151:intron | 25.0% |
| !!! | TTGAATTTGGTGTAAAGAAA+GGG | + | chr4.4:17225777-17225796 | MS.gene09151:CDS | 25.0% |
| AAAAAAGGTTCATGAGTATG+AGG | + | chr4.4:17227423-17227442 | MS.gene09151:CDS | 30.0% | |
| AAACAATGGCAATGATTAAC+AGG | + | chr4.4:17227236-17227255 | MS.gene09151:CDS | 30.0% | |
| AAATATAACACAGCATCTAC+AGG | - | chr4.4:17227601-17227620 | None:intergenic | 30.0% | |
| AACATGGAAAGAATGATGAA+TGG | + | chr4.4:17226265-17226284 | MS.gene09151:CDS | 30.0% | |
| AATCATTGCCATTGTTTGAT+TGG | - | chr4.4:17227233-17227252 | None:intergenic | 30.0% | |
| AATTCCTGATCATGAACAAA+TGG | + | chr4.4:17226500-17226519 | MS.gene09151:CDS | 30.0% | |
| AGAGAATAAAAATGTGTCCA+AGG | + | chr4.4:17226150-17226169 | MS.gene09151:CDS | 30.0% | |
| ATATCTATTTCCTTCATCCA+TGG | - | chr4.4:17225356-17225375 | None:intergenic | 30.0% | |
| ATGTGCCAATTCTCAATTAA+TGG | - | chr4.4:17226097-17226116 | None:intergenic | 30.0% | |
| ATTGGAACAGAAAACCAATT+TGG | - | chr4.4:17225231-17225250 | None:intergenic | 30.0% | |
| CAAAACATTGAAGAAAACAG+TGG | + | chr4.4:17225632-17225651 | MS.gene09151:CDS | 30.0% | |
| CATTCTTAATTCAAGTGACA+TGG | - | chr4.4:17226915-17226934 | None:intergenic | 30.0% | |
| CCAATTCTCAATTAATGGTT+CGG | - | chr4.4:17226092-17226111 | None:intergenic | 30.0% | |
| CTTCAACATTATCATGCTTA+TGG | - | chr4.4:17226243-17226262 | None:intergenic | 30.0% | |
| GAATGATCAATAACAATGCA+AGG | - | chr4.4:17225479-17225498 | None:intergenic | 30.0% | |
| GACCAATTTGGATAACAAAA+AGG | + | chr4.4:17228002-17228021 | MS.gene09151:CDS | 30.0% | |
| GATCTTTACAAGCTTGAATT+TGG | + | chr4.4:17225764-17225783 | MS.gene09151:CDS | 30.0% | |
| TCAAAATAGATGTGATAAGG+TGG | + | chr4.4:17226000-17226019 | MS.gene09151:CDS | 30.0% | |
| TGATTCAGGTACAAAAAAAG+TGG | + | chr4.4:17225682-17225701 | MS.gene09151:CDS | 30.0% | |
| TGTAGATGCTGTGTTATATT+TGG | + | chr4.4:17227600-17227619 | MS.gene09151:CDS | 30.0% | |
| ! | AATGGATTTGCAAATGGTAA+TGG | + | chr4.4:17227829-17227848 | MS.gene09151:CDS | 30.0% |
| ! | AGAACCATGATTTTAAATCG+AGG | + | chr4.4:17226667-17226686 | MS.gene09151:intron | 30.0% |
| ! | CATGTAAATGGATTTGCAAA+TGG | + | chr4.4:17227823-17227842 | MS.gene09151:CDS | 30.0% |
| ! | GGAATCATTGTCAAATTTTG+AGG | + | chr4.4:17227624-17227643 | MS.gene09151:CDS | 30.0% |
| ! | TAAAATCATGGTTCTATGCA+TGG | - | chr4.4:17226662-17226681 | None:intergenic | 30.0% |
| ! | TGGAATTCATATGTTGTTTG+AGG | + | chr4.4:17225652-17225671 | MS.gene09151:CDS | 30.0% |
| ! | TTATGAGAGACTACAAGTTT+TGG | + | chr4.4:17228053-17228072 | MS.gene09151:CDS | 30.0% |
| ! | TTTGAGATTGAATGTTCCAA+AGG | + | chr4.4:17225823-17225842 | MS.gene09151:CDS | 30.0% |
| !! | CCCCAATAAAAATGTTTTAG+AGG | - | chr4.4:17226759-17226778 | None:intergenic | 30.0% |
| !! | CTTGAATTTGGTGTAAAGAA+AGG | + | chr4.4:17225776-17225795 | MS.gene09151:CDS | 30.0% |
| !! | TATGAAGCAGAAGTATCAAT+TGG | + | chr4.4:17226471-17226490 | MS.gene09151:CDS | 30.0% |
| AAAGAAAGGGAATGAAACCT+TGG | + | chr4.4:17225790-17225809 | MS.gene09151:CDS | 35.0% | |
| AAATAGATGTGATAAGGTGG+TGG | + | chr4.4:17226003-17226022 | MS.gene09151:CDS | 35.0% | |
| AAGCAGAACATGATCAAAGA+AGG | + | chr4.4:17225533-17225552 | MS.gene09151:CDS | 35.0% | |
| AATCCGCATTGAAATCTGAA+AGG | + | chr4.4:17227146-17227165 | MS.gene09151:CDS | 35.0% | |
| ACTCAACTCTACATCTTCTT+CGG | - | chr4.4:17227929-17227948 | None:intergenic | 35.0% | |
| AGATGCTGTGTTATATTTGG+AGG | + | chr4.4:17227603-17227622 | MS.gene09151:CDS | 35.0% | |
| ATTGAGAATTGGCACATTTC+TGG | + | chr4.4:17226100-17226119 | MS.gene09151:CDS | 35.0% | |
| CAAATCCATTTACATGACCT+TGG | - | chr4.4:17227819-17227838 | None:intergenic | 35.0% | |
| CAGTTTGATTCCTGTTGAAT+TGG | + | chr4.4:17225949-17225968 | MS.gene09151:CDS | 35.0% | |
| CATTGAGAAAAGGGGATAAA+GGG | + | chr4.4:17228112-17228131 | MS.gene09151:CDS | 35.0% | |
| CCGAACCATTAATTGAGAAT+TGG | + | chr4.4:17226089-17226108 | MS.gene09151:CDS | 35.0% | |
| CTAGGTTCATATGTTTCTCT+AGG | + | chr4.4:17226304-17226323 | MS.gene09151:CDS | 35.0% | |
| CTTCCTTTCAGATTTCAATG+CGG | - | chr4.4:17227152-17227171 | None:intergenic | 35.0% | |
| GAACAAATGGATGAGTATCA+AGG | + | chr4.4:17226513-17226532 | MS.gene09151:CDS | 35.0% | |
| GATCAATAACAATGCAAGGA+GGG | - | chr4.4:17225475-17225494 | None:intergenic | 35.0% | |
| GATTTCCAAGGTCATGTAAA+TGG | + | chr4.4:17227811-17227830 | MS.gene09151:CDS | 35.0% | |
| GGAATTGAGAAAGTTGAAGA+GGG | + | chr4.4:17225398-17225417 | MS.gene09151:CDS | 35.0% | |
| GTATCAGCTCATTGAGAAAA+GGG | + | chr4.4:17228103-17228122 | MS.gene09151:CDS | 35.0% | |
| TAACCATATGCCTTCATCTT+TGG | + | chr4.4:17226946-17226965 | MS.gene09151:CDS | 35.0% | |
| TACAACATCTACGTGATTTG+AGG | + | chr4.4:17228157-17228176 | MS.gene09151:CDS | 35.0% | |
| TATCAGCTCATTGAGAAAAG+GGG | + | chr4.4:17228104-17228123 | MS.gene09151:CDS | 35.0% | |
| TCATCCATTTGTTCATGATC+AGG | - | chr4.4:17226507-17226526 | None:intergenic | 35.0% | |
| TCATTAAGCTCCAAAGATGA+AGG | - | chr4.4:17226959-17226978 | None:intergenic | 35.0% | |
| TCATTGAGAAAAGGGGATAA+AGG | + | chr4.4:17228111-17228130 | MS.gene09151:CDS | 35.0% | |
| TGAATCAGATGATATGTGTG+AGG | + | chr4.4:17225265-17225284 | MS.gene09151:CDS | 35.0% | |
| TGATCAATAACAATGCAAGG+AGG | - | chr4.4:17225476-17225495 | None:intergenic | 35.0% | |
| TGCTGTTGAGATTTCCAAAT+TGG | + | chr4.4:17225214-17225233 | MS.gene09151:CDS | 35.0% | |
| TGTATCAGCTCATTGAGAAA+AGG | + | chr4.4:17228102-17228121 | MS.gene09151:CDS | 35.0% | |
| TGTTGAAGTTGAGAAAACTG+AGG | + | chr4.4:17225880-17225899 | MS.gene09151:CDS | 35.0% | |
| TTCAGCTGAAAAGACCAATT+TGG | + | chr4.4:17227990-17228009 | MS.gene09151:CDS | 35.0% | |
| TTCAGGTACAAAAAAAGTGG+AGG | + | chr4.4:17225685-17225704 | MS.gene09151:CDS | 35.0% | |
| TTGTATCCGAAAGAATATCC+TGG | - | chr4.4:17226539-17226558 | None:intergenic | 35.0% | |
| TTTAATGCCCAACATGATAG+TGG | + | chr4.4:17226600-17226619 | MS.gene09151:CDS | 35.0% | |
| TTTGCAGTATCAGAGAATGA+TGG | + | chr4.4:17227294-17227313 | MS.gene09151:CDS | 35.0% | |
| ! | ACTAGAACAGCTGAAAGTAT+TGG | + | chr4.4:17227663-17227682 | MS.gene09151:CDS | 35.0% |
| ! | AGATGTGAGGTTTTCTCAAA+TGG | + | chr4.4:17226207-17226226 | MS.gene09151:CDS | 35.0% |
| ! | AGATGTTTTTCCATGGATGA+AGG | + | chr4.4:17225343-17225362 | MS.gene09151:CDS | 35.0% |
| ! | ATGCATGGATTTGAGGTAAA+AGG | - | chr4.4:17226647-17226666 | None:intergenic | 35.0% |
| ! | GATATGATTAATGGTGCTGA+TGG | + | chr4.4:17225371-17225390 | MS.gene09151:CDS | 35.0% |
| ! | GCAACCTCGATTTAAAATCA+TGG | - | chr4.4:17226674-17226693 | None:intergenic | 35.0% |
| ! | GGAGAGTGAAGATTTTATTC+TGG | + | chr4.4:17226039-17226058 | MS.gene09151:CDS | 35.0% |
| ! | TCATTGGATGGAAGTGTAAT+AGG | + | chr4.4:17227085-17227104 | MS.gene09151:CDS | 35.0% |
| ! | TTCAGCTAGTTTGTGATGAT+TGG | - | chr4.4:17225249-17225268 | None:intergenic | 35.0% |
| ! | TTTGAGGTTGAACATGATTC+AGG | + | chr4.4:17225668-17225687 | MS.gene09151:CDS | 35.0% |
| !! | ATTAATGGTGCTGATGGAAA+GGG | + | chr4.4:17225377-17225396 | MS.gene09151:CDS | 35.0% |
| !! | CAAAAAGGTTGGTTTAGAAG+AGG | + | chr4.4:17228017-17228036 | MS.gene09151:CDS | 35.0% |
| !! | GTACTGATTGCATCAAAAAG+TGG | - | chr4.4:17227907-17227926 | None:intergenic | 35.0% |
| !! | TGTCAAATTTTGAGGAAGAG+AGG | + | chr4.4:17227632-17227651 | MS.gene09151:CDS | 35.0% |
| !!! | AGAAACTACTTTTTCTCGAG+AGG | + | chr4.4:17227041-17227060 | MS.gene09151:CDS | 35.0% |
| !!! | GGATATTTTGATGGAGAACT+AGG | + | chr4.4:17226286-17226305 | MS.gene09151:CDS | 35.0% |
| !!! | TACTTTTTCTCGAGAGGAAA+GGG | + | chr4.4:17227047-17227066 | MS.gene09151:CDS | 35.0% |
| AAATGTGTCCAAGGTCAATG+AGG | + | chr4.4:17226159-17226178 | MS.gene09151:CDS | 40.0% | |
| AACATCTTCGTGAAGAGAAC+GGG | + | chr4.4:17227752-17227771 | MS.gene09151:CDS | 40.0% | |
| AACTGCAAATGTAGTCGCAT+CGG | - | chr4.4:17226730-17226749 | None:intergenic | 40.0% | |
| AGGCTTACCACTATCATGTT+GGG | - | chr4.4:17226610-17226629 | None:intergenic | 40.0% | |
| ATTCATCTACTAGCTCAGTC+AGG | + | chr4.4:17226577-17226596 | MS.gene09151:CDS | 40.0% | |
| ATTGAATGTTCCAAAGGCTC+AGG | + | chr4.4:17225829-17225848 | MS.gene09151:CDS | 40.0% | |
| CGCATTGAAATCTGAAAGGA+AGG | + | chr4.4:17227150-17227169 | MS.gene09151:CDS | 40.0% | |
| GAACATCTTCGTGAAGAGAA+CGG | + | chr4.4:17227751-17227770 | MS.gene09151:CDS | 40.0% | |
| GAAGAAGATGTAGAGTTGAG+TGG | + | chr4.4:17227928-17227947 | MS.gene09151:CDS | 40.0% | |
| GACGATCATGATGATTTCCA+AGG | + | chr4.4:17227799-17227818 | MS.gene09151:CDS | 40.0% | |
| GATGATGCATCACAAACTCA+TGG | + | chr4.4:17226438-17226457 | MS.gene09151:CDS | 40.0% | |
| GGAACAGAAGATTCATTGGA+TGG | + | chr4.4:17227073-17227092 | MS.gene09151:CDS | 40.0% | |
| GGAGCTTAATGAGAATGAAG+AGG | + | chr4.4:17226967-17226986 | MS.gene09151:CDS | 40.0% | |
| GGGAATTGAGAAAGTTGAAG+AGG | + | chr4.4:17225397-17225416 | MS.gene09151:CDS | 40.0% | |
| GTAATAGGCGACATAGAATG+TGG | + | chr4.4:17227100-17227119 | MS.gene09151:CDS | 40.0% | |
| GTCAGGAACAGAAGATTCAT+TGG | + | chr4.4:17227069-17227088 | MS.gene09151:CDS | 40.0% | |
| GTCGCAGACCTTTATAATGT+TGG | + | chr4.4:17226695-17226714 | MS.gene09151:intron | 40.0% | |
| GTGGATTCAACCAATTCAAC+AGG | - | chr4.4:17225962-17225981 | None:intergenic | 40.0% | |
| TCAAGGCCAGGATATTCTTT+CGG | + | chr4.4:17226530-17226549 | MS.gene09151:CDS | 40.0% | |
| TCACACACAAGATCTCTACA+AGG | - | chr4.4:17225188-17225207 | None:intergenic | 40.0% | |
| TCATCAAGGAAGGAAAGTCT+TGG | + | chr4.4:17227858-17227877 | MS.gene09151:CDS | 40.0% | |
| TCTACGTGATTTGAGGAATG+TGG | + | chr4.4:17228164-17228183 | MS.gene09151:CDS | 40.0% | |
| TCTCAAAGTTTCCTCTTCCA+AGG | - | chr4.4:17225810-17225829 | None:intergenic | 40.0% | |
| TCTTGGCTACTAAAGCAAAG+AGG | + | chr4.4:17227875-17227894 | MS.gene09151:CDS | 40.0% | |
| TGATTCAACCTCATTGACCT+TGG | - | chr4.4:17226170-17226189 | None:intergenic | 40.0% | |
| TGTAGCAGCCAATCAAACAA+TGG | + | chr4.4:17227222-17227241 | MS.gene09151:CDS | 40.0% | |
| TGTGCTTGTTCTGTTTGTGA+TGG | + | chr4.4:17225719-17225738 | MS.gene09151:CDS | 40.0% | |
| ! | ATTTCCATTTTCTGTGGCAG+TGG | - | chr4.4:17225981-17226000 | None:intergenic | 40.0% |
| ! | TGATGGTGTCAAGGAAACTA+TGG | + | chr4.4:17225736-17225755 | MS.gene09151:CDS | 40.0% |
| ! | TGGTTCTATGCATGGATTTG+AGG | - | chr4.4:17226654-17226673 | None:intergenic | 40.0% |
| ! | TTCTGTTTGTGATGGTGTCA+AGG | + | chr4.4:17225727-17225746 | MS.gene09151:CDS | 40.0% |
| !! | AAAGGTTGGTTTAGAAGAGG+AGG | + | chr4.4:17228020-17228039 | MS.gene09151:CDS | 40.0% |
| !! | ATGGAAAGCATCATCAAGGA+AGG | + | chr4.4:17227848-17227867 | MS.gene09151:CDS | 40.0% |
| !! | GATTAATGGTGCTGATGGAA+AGG | + | chr4.4:17225376-17225395 | MS.gene09151:CDS | 40.0% |
| !! | GCACATTTCTGGTGATATTG+TGG | + | chr4.4:17226111-17226130 | MS.gene09151:CDS | 40.0% |
| !! | GGTAATGGAAAGCATCATCA+AGG | + | chr4.4:17227844-17227863 | MS.gene09151:CDS | 40.0% |
| !! | TGAGAGACTACAAGTTTTGG+AGG | + | chr4.4:17228056-17228075 | MS.gene09151:CDS | 40.0% |
| !! | TGTAGTTGATGAAGACTCTC+CGG | - | chr4.4:17227019-17227038 | None:intergenic | 40.0% |
| !!! | CTACTTTTTCTCGAGAGGAA+AGG | + | chr4.4:17227046-17227065 | MS.gene09151:CDS | 40.0% |
| AATGGATGAGTATCAAGGCC+AGG | + | chr4.4:17226518-17226537 | MS.gene09151:CDS | 45.0% | |
| ACAATCCGAGTACGATCAAG+AGG | + | chr4.4:17227321-17227340 | MS.gene09151:CDS | 45.0% | |
| AGAGAAAGCAGCAATGCAGA+TGG | + | chr4.4:17227267-17227286 | MS.gene09151:CDS | 45.0% | |
| AGGGAATGAAACCTTGGAAG+AGG | + | chr4.4:17225796-17225815 | MS.gene09151:CDS | 45.0% | |
| ATCACAAACTCATGGTGAGG+AGG | + | chr4.4:17226446-17226465 | MS.gene09151:CDS | 45.0% | |
| CAGGAACATAGGAGATCTTG+CGG | + | chr4.4:17228197-17228216 | MS.gene09151:CDS | 45.0% | |
| CATAGCCTCTTGATCGTACT+CGG | - | chr4.4:17227329-17227348 | None:intergenic | 45.0% | |
| GAACTCAGAGTCAGGAACAT+AGG | + | chr4.4:17228186-17228205 | MS.gene09151:CDS | 45.0% | |
| GAATCCACTGCCACAGAAAA+TGG | + | chr4.4:17225974-17225993 | MS.gene09151:CDS | 45.0% | |
| GAGGCTTACCACTATCATGT+TGG | - | chr4.4:17226611-17226630 | None:intergenic | 45.0% | |
| TGATCATCATCCTGAGCCTT+TGG | - | chr4.4:17225842-17225861 | None:intergenic | 45.0% | |
| TGCATCACAAACTCATGGTG+AGG | + | chr4.4:17226443-17226462 | MS.gene09151:CDS | 45.0% | |
| ! | GCTCCAAAGATGAAGGCATA+TGG | - | chr4.4:17226952-17226971 | None:intergenic | 45.0% |
| ! | GGTTTGAGATGTTCTTGCTG+TGG | + | chr4.4:17225419-17225438 | MS.gene09151:CDS | 45.0% |
| ! | TAGATGTGATAAGGTGGTGG+AGG | + | chr4.4:17226006-17226025 | MS.gene09151:CDS | 45.0% |
| !! | GGCATATGGTTACTTGCTGT+TGG | - | chr4.4:17226938-17226957 | None:intergenic | 45.0% |
| !!! | TGCGGATTTTAACTCCTCGA+AGG | - | chr4.4:17227134-17227153 | None:intergenic | 45.0% |
| AGCAACGCTGAGGATAGTGA+TGG | + | chr4.4:17227511-17227530 | MS.gene09151:CDS | 50.0% | |
| CTTCGTGAAGAGAACGGGAA+TGG | + | chr4.4:17227757-17227776 | MS.gene09151:CDS | 50.0% | |
| GCAACGCTGAGGATAGTGAT+GGG | + | chr4.4:17227512-17227531 | MS.gene09151:CDS | 50.0% | |
| GGAATGTGGAACTCAGAGTC+AGG | + | chr4.4:17228178-17228197 | MS.gene09151:CDS | 50.0% | |
| TCCTCAGCGTTGCTACAAGA+AGG | - | chr4.4:17227505-17227524 | None:intergenic | 50.0% | |
| TCCTTCTTGTAGCAACGCTG+AGG | + | chr4.4:17227501-17227520 | MS.gene09151:CDS | 50.0% | |
| TGAAGACTCTCCGGAGAAGT+CGG | - | chr4.4:17227010-17227029 | None:intergenic | 50.0% | |
| TTTCTCGAGAGGAAAGGGTC+AGG | + | chr4.4:17227052-17227071 | MS.gene09151:CDS | 50.0% | |
| !! | CAGCATCTACAGGAGTGTTC+TGG | - | chr4.4:17227591-17227610 | None:intergenic | 50.0% |
| !! | GGTTGGTTTAGAAGAGGAGG+TGG | + | chr4.4:17228023-17228042 | MS.gene09151:CDS | 50.0% |
| !! | GTGATAAGGTGGTGGAGGAA+GGG | + | chr4.4:17226011-17226030 | MS.gene09151:CDS | 50.0% |
| !! | TGTGATAAGGTGGTGGAGGA+AGG | + | chr4.4:17226010-17226029 | MS.gene09151:CDS | 50.0% |
| ! | ATGTGGTGACGTGACCTTCG+AGG | + | chr4.4:17227117-17227136 | MS.gene09151:CDS | 55.0% |
| !! | GGTGGTGGAGGAAGGGTTTA+AGG | + | chr4.4:17226018-17226037 | MS.gene09151:CDS | 55.0% |
| CTCCGGAGAAGTCGGTGTGT+CGG | - | chr4.4:17227002-17227021 | None:intergenic | 60.0% | |
| TCCGGAGAAGTCGGTGTGTC+GGG | - | chr4.4:17227001-17227020 | None:intergenic | 60.0% | |
| !! | TCCCGACACACCGACTTCTC+CGG | + | chr4.4:17226997-17227016 | MS.gene09151:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17225179 | 17228224 | 17225179 | ID=MS.gene09151 |
| chr4.4 | mRNA | 17225179 | 17228224 | 17225179 | ID=MS.gene09151.t1;Parent=MS.gene09151 |
| chr4.4 | exon | 17225179 | 17226325 | 17225179 | ID=MS.gene09151.t1.exon1;Parent=MS.gene09151.t1 |
| chr4.4 | CDS | 17225179 | 17226325 | 17225179 | ID=cds.MS.gene09151.t1;Parent=MS.gene09151.t1 |
| chr4.4 | exon | 17226433 | 17226621 | 17226433 | ID=MS.gene09151.t1.exon2;Parent=MS.gene09151.t1 |
| chr4.4 | CDS | 17226433 | 17226621 | 17226433 | ID=cds.MS.gene09151.t1;Parent=MS.gene09151.t1 |
| chr4.4 | exon | 17226873 | 17228224 | 17226873 | ID=MS.gene09151.t1.exon3;Parent=MS.gene09151.t1 |
| chr4.4 | CDS | 17226873 | 17228224 | 17226873 | ID=cds.MS.gene09151.t1;Parent=MS.gene09151.t1 |
| Gene Sequence |
| Protein sequence |
