Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09777.t1 | XP_003611333.2 | 93.3 | 389 | 17 | 2 | 1 | 381 | 1 | 388 | 5.50E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09777.t1 | Q8W4K5 | 38.9 | 252 | 120 | 5 | 157 | 383 | 248 | 490 | 6.2e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09777.t1 | G7JXD4 | 93.3 | 389 | 17 | 2 | 1 | 381 | 1 | 388 | 4.0e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene09777 | 0.81004 | 1.40E-50 | -1.69E-46 |
| MS.gene049757 | MS.gene09777 | 0.875724 | 2.46E-68 | -1.69E-46 |
| MS.gene050060 | MS.gene09777 | 0.841164 | 5.61E-58 | -1.69E-46 |
| MS.gene050133 | MS.gene09777 | -0.814259 | 1.69E-51 | -1.69E-46 |
| MS.gene050400 | MS.gene09777 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene050553 | MS.gene09777 | 0.88609 | 4.63E-72 | -1.69E-46 |
| MS.gene050670 | MS.gene09777 | 0.805933 | 1.05E-49 | -1.69E-46 |
| MS.gene051521 | MS.gene09777 | 0.889159 | 3.11E-73 | -1.69E-46 |
| MS.gene051525 | MS.gene09777 | 0.802819 | 4.68E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene09777 | 0.832762 | 7.86E-56 | -1.69E-46 |
| MS.gene052469 | MS.gene09777 | 0.84283 | 2.03E-58 | -1.69E-46 |
| MS.gene053169 | MS.gene09777 | 0.827155 | 1.83E-54 | -1.69E-46 |
| MS.gene053889 | MS.gene09777 | 0.801463 | 8.90E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene09777 | 0.814971 | 1.17E-51 | -1.69E-46 |
| MS.gene054556 | MS.gene09777 | 0.81528 | 1.00E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene09777 | 0.855447 | 6.27E-62 | -1.69E-46 |
| MS.gene05556 | MS.gene09777 | 0.840604 | 7.87E-58 | -1.69E-46 |
| MS.gene055741 | MS.gene09777 | 0.857392 | 1.68E-62 | -1.69E-46 |
| MS.gene055744 | MS.gene09777 | 0.864253 | 1.39E-64 | -1.69E-46 |
| MS.gene056233 | MS.gene09777 | 0.83025 | 3.26E-55 | -1.69E-46 |
| MS.gene056508 | MS.gene09777 | 0.815725 | 7.98E-52 | -1.69E-46 |
| MS.gene057019 | MS.gene09777 | 0.802813 | 4.70E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene09777 | 0.801357 | 9.35E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene09777 | 0.821817 | 3.30E-53 | -1.69E-46 |
| MS.gene058007 | MS.gene09777 | 0.807726 | 4.39E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene09777 | 0.836645 | 8.29E-57 | -1.69E-46 |
| MS.gene058448 | MS.gene09777 | 0.827745 | 1.32E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene09777 | 0.829273 | 5.64E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene09777 | 0.807542 | 4.80E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene09777 | 0.800755 | 1.24E-48 | -1.69E-46 |
| MS.gene059717 | MS.gene09777 | 0.853977 | 1.67E-61 | -1.69E-46 |
| MS.gene059868 | MS.gene09777 | 0.819786 | 9.67E-53 | -1.69E-46 |
| MS.gene059946 | MS.gene09777 | 0.841164 | 5.61E-58 | -1.69E-46 |
| MS.gene060372 | MS.gene09777 | 0.834565 | 2.78E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene09777 | 0.800209 | 1.60E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09777.t1 | MTR_5g012870 | 95.116 | 389 | 10 | 2 | 1 | 381 | 1 | 388 | 0.0 | 763 |
| MS.gene09777.t1 | MTR_3g110182 | 43.434 | 198 | 101 | 4 | 177 | 371 | 216 | 405 | 2.11e-41 | 150 |
| MS.gene09777.t1 | MTR_4g039910 | 33.923 | 339 | 177 | 10 | 25 | 338 | 13 | 329 | 6.95e-33 | 126 |
| MS.gene09777.t1 | MTR_7g095500 | 36.860 | 293 | 145 | 6 | 105 | 366 | 175 | 458 | 7.90e-33 | 130 |
| MS.gene09777.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 96 | 327 | 5.93e-32 | 124 |
| MS.gene09777.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 226 | 457 | 1.35e-31 | 125 |
| MS.gene09777.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 227 | 458 | 1.60e-31 | 125 |
| MS.gene09777.t1 | MTR_1g041395 | 38.793 | 232 | 121 | 3 | 161 | 371 | 233 | 464 | 1.67e-31 | 125 |
| MS.gene09777.t1 | MTR_1g102980 | 41.410 | 227 | 112 | 4 | 164 | 371 | 95 | 319 | 2.08e-30 | 119 |
| MS.gene09777.t1 | MTR_1g071450 | 39.831 | 236 | 120 | 5 | 161 | 374 | 241 | 476 | 3.09e-30 | 121 |
| MS.gene09777.t1 | MTR_1g102980 | 41.410 | 227 | 112 | 4 | 164 | 371 | 220 | 444 | 1.04e-29 | 119 |
| MS.gene09777.t1 | MTR_3g110182 | 43.972 | 141 | 69 | 3 | 177 | 315 | 214 | 346 | 1.50e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09777.t1 | AT4G17350 | 55.528 | 407 | 152 | 8 | 7 | 390 | 2 | 402 | 5.55e-132 | 384 |
| MS.gene09777.t1 | AT5G47440 | 51.597 | 407 | 170 | 8 | 7 | 391 | 2 | 403 | 1.01e-118 | 351 |
| MS.gene09777.t1 | AT4G16670 | 50.678 | 369 | 152 | 8 | 53 | 393 | 63 | 429 | 2.22e-100 | 305 |
| MS.gene09777.t1 | AT4G16670 | 52.941 | 289 | 108 | 6 | 53 | 314 | 63 | 350 | 8.82e-79 | 247 |
| MS.gene09777.t1 | AT4G16670 | 48.428 | 318 | 107 | 7 | 53 | 314 | 63 | 379 | 1.96e-73 | 234 |
| MS.gene09777.t1 | AT3G22810 | 40.952 | 315 | 143 | 7 | 88 | 371 | 20 | 322 | 2.63e-57 | 191 |
| MS.gene09777.t1 | AT3G22810 | 39.755 | 327 | 156 | 7 | 76 | 371 | 144 | 460 | 1.12e-55 | 190 |
| MS.gene09777.t1 | AT4G14740 | 38.801 | 317 | 149 | 8 | 88 | 371 | 22 | 326 | 1.10e-48 | 168 |
| MS.gene09777.t1 | AT4G14740 | 38.801 | 317 | 149 | 8 | 88 | 371 | 161 | 465 | 2.82e-47 | 168 |
| MS.gene09777.t1 | AT4G14740 | 38.801 | 317 | 149 | 8 | 88 | 371 | 161 | 465 | 2.82e-47 | 168 |
| MS.gene09777.t1 | AT5G43870 | 36.415 | 357 | 194 | 8 | 35 | 371 | 100 | 443 | 1.13e-39 | 147 |
| MS.gene09777.t1 | AT3G22810 | 37.809 | 283 | 130 | 6 | 76 | 329 | 144 | 409 | 1.95e-39 | 145 |
| MS.gene09777.t1 | AT4G32780 | 34.699 | 366 | 191 | 10 | 48 | 371 | 35 | 394 | 3.01e-39 | 145 |
| MS.gene09777.t1 | AT4G14740 | 38.760 | 258 | 115 | 6 | 88 | 314 | 161 | 406 | 6.31e-34 | 130 |
| MS.gene09777.t1 | AT3G63300 | 36.875 | 320 | 151 | 7 | 97 | 383 | 31 | 332 | 3.56e-28 | 113 |
| MS.gene09777.t1 | AT3G63300 | 37.013 | 308 | 145 | 6 | 97 | 371 | 189 | 480 | 6.31e-28 | 115 |
| MS.gene09777.t1 | AT5G43870 | 39.407 | 236 | 117 | 4 | 96 | 314 | 158 | 384 | 8.59e-25 | 105 |
Find 67 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTGAAGATCTCTATTT+TGG | 0.173414 | 5.3:-6016215 | MS.gene09777:CDS |
| ATTATTGTAGGTGTGGTTTA+TGG | 0.231356 | 5.3:-6016284 | MS.gene09777:intron |
| GTTGGTGGCTCAGGAATTTC+TGG | 0.231758 | 5.3:+6018569 | None:intergenic |
| TTGTTGCAGGTTACGGAAAA+AGG | 0.263078 | 5.3:-6016725 | MS.gene09777:intron |
| CCCATTCGACAATTAGTAAA+TGG | 0.310053 | 5.3:+6017503 | None:intergenic |
| GTAAATGGTATGAGCTTTCC+AGG | 0.322981 | 5.3:+6017518 | None:intergenic |
| TAGTGACAATCACTCTAAAT+TGG | 0.333729 | 5.3:-6017324 | MS.gene09777:CDS |
| AATTGTCGAATGGGTACTAT+TGG | 0.349296 | 5.3:-6017494 | MS.gene09777:CDS |
| GAATGGGTACTATTGGAAAA+TGG | 0.359539 | 5.3:-6017487 | MS.gene09777:CDS |
| GGGAGATTTGTTGCAGGTTA+CGG | 0.396348 | 5.3:-6016732 | MS.gene09777:CDS |
| AGCATCTTATTGTGTTGAAA+TGG | 0.401646 | 5.3:-6017270 | MS.gene09777:CDS |
| CTTACTGCTGCAGCTGCAAC+AGG | 0.415178 | 5.3:-6017161 | MS.gene09777:intron |
| CCATTTACTAATTGTCGAAT+GGG | 0.421708 | 5.3:-6017503 | MS.gene09777:CDS |
| AGCCAACGCGGAGGCTAGTC+CGG | 0.424655 | 5.3:+6017361 | None:intergenic |
| CTCTAAATTGGATGTTGCTA+TGG | 0.425258 | 5.3:-6017312 | MS.gene09777:CDS |
| TCAAGAGGTGTTGGTGGCTC+AGG | 0.432946 | 5.3:+6018560 | None:intergenic |
| ATGCGAGGGAGATTTGTTGC+AGG | 0.435484 | 5.3:-6016738 | MS.gene09777:CDS |
| TTACATCAACAAGAAATATC+AGG | 0.443700 | 5.3:-6016589 | MS.gene09777:intron |
| CATTCTGCACTATCAATTGC+CGG | 0.444928 | 5.3:-6017380 | MS.gene09777:CDS |
| TGGAGTTCTTGTCTAGATCC+TGG | 0.446623 | 5.3:-6018532 | MS.gene09777:CDS |
| TAAGACTCATGAAACATTGC+CGG | 0.447113 | 5.3:-6018447 | MS.gene09777:CDS |
| AACATTGGAGAAAAGGATCA+TGG | 0.456120 | 5.3:-6018661 | MS.gene09777:CDS |
| ATGTTTCAACATTGGAGAAA+AGG | 0.460245 | 5.3:-6018668 | MS.gene09777:CDS |
| ACCAACACCTCTTGAGCCTA+TGG | 0.465547 | 5.3:-6018552 | MS.gene09777:CDS |
| ACCATTTACTAATTGTCGAA+TGG | 0.480098 | 5.3:-6017504 | MS.gene09777:CDS |
| CACTTACATCAGAAGCATCA+TGG | 0.482041 | 5.3:-6017461 | MS.gene09777:CDS |
| TTCTGCTTCTGAGATTTCAA+AGG | 0.483264 | 5.3:-6018504 | MS.gene09777:CDS |
| AATCTCCCTCGCATGGAGAA+TGG | 0.495676 | 5.3:+6016747 | None:intergenic |
| AGCCTCCGCGTTGGCTTCTG+TGG | 0.496691 | 5.3:-6017354 | MS.gene09777:CDS |
| TCAATAAGTCCCTACGATAG+AGG | 0.499479 | 5.3:-6016827 | MS.gene09777:CDS |
| ATGCAAACACTTCTGTTAAG+AGG | 0.499925 | 5.3:-6017436 | MS.gene09777:CDS |
| ATAGGCTCAAGAGGTGTTGG+TGG | 0.501332 | 5.3:+6018554 | None:intergenic |
| TTCTGCTATTCCTCTATCGT+AGG | 0.504764 | 5.3:+6016817 | None:intergenic |
| TCCATAGGCTCAAGAGGTGT+TGG | 0.507446 | 5.3:+6018551 | None:intergenic |
| AACATCTGACACTCAGAAGC+AGG | 0.508571 | 5.3:+6016779 | None:intergenic |
| CATGGCCATACAGAAAAGAA+AGG | 0.529161 | 5.3:-6016241 | MS.gene09777:CDS |
| TCTGCTATTCCTCTATCGTA+GGG | 0.529302 | 5.3:+6016818 | None:intergenic |
| GATGGAATAGAATTTCTACT+TGG | 0.537636 | 5.3:-6016125 | MS.gene09777:CDS |
| ATCAAAAGCAAGCACATTGG+AGG | 0.543010 | 5.3:-6016475 | MS.gene09777:CDS |
| CTCAGAAGCAGAAAGACTCC+AGG | 0.544523 | 5.3:+6018514 | None:intergenic |
| AAAGTGGTATGTTTCAACAT+TGG | 0.544666 | 5.3:-6018676 | MS.gene09777:CDS |
| TGCCGGACTAGCCTCCGCGT+TGG | 0.550070 | 5.3:-6017363 | MS.gene09777:CDS |
| GTTGAAATGGCAGAGTTAGC+AGG | 0.552664 | 5.3:-6017257 | MS.gene09777:CDS |
| TGCAACAAATCTCCCTCGCA+TGG | 0.556607 | 5.3:+6016740 | None:intergenic |
| ACTTACATCAGAAGCATCAT+GGG | 0.561480 | 5.3:-6017460 | MS.gene09777:CDS |
| AAGGATCATGGCAATGGCAA+GGG | 0.568181 | 5.3:-6018649 | MS.gene09777:CDS |
| GCGGTCGATATTCAAACGCC+AGG | 0.569915 | 5.3:-6017197 | MS.gene09777:CDS |
| GTAAGAGTCATTAGATCACC+TGG | 0.584194 | 5.3:+6017179 | None:intergenic |
| TGTTTCATGTAAGCTTTGAG+AGG | 0.587129 | 5.3:-6016899 | MS.gene09777:intron |
| ATGGCCATACAGAAAAGAAA+GGG | 0.589553 | 5.3:-6016240 | MS.gene09777:CDS |
| GATCTAGACAAGAACTCCAT+AGG | 0.595247 | 5.3:+6018536 | None:intergenic |
| AAGAACTCCATAGGCTCAAG+AGG | 0.596767 | 5.3:+6018545 | None:intergenic |
| AAAGGATCATGGCAATGGCA+AGG | 0.597294 | 5.3:-6018650 | MS.gene09777:CDS |
| TCATTTCAGGTGCATTACGA+TGG | 0.604353 | 5.3:-6016626 | MS.gene09777:intron |
| GGAGAAAAGGATCATGGCAA+TGG | 0.608247 | 5.3:-6018655 | MS.gene09777:CDS |
| CGCTTCTACTGTTAAGTCTG+CGG | 0.608778 | 5.3:-6017216 | MS.gene09777:CDS |
| AAGATCAAAAGCAAGCACAT+TGG | 0.613502 | 5.3:-6016478 | MS.gene09777:CDS |
| GAGAACCATTCTCCATGCGA+GGG | 0.616237 | 5.3:-6016752 | MS.gene09777:CDS |
| TTTGGCCTCAAAACTGCACA+AGG | 0.625130 | 5.3:-6016197 | MS.gene09777:CDS |
| TGAGAACCATTCTCCATGCG+AGG | 0.636940 | 5.3:-6016753 | MS.gene09777:CDS |
| TGTGTAACGAAGACTCTGCA+TGG | 0.643429 | 5.3:-6016259 | MS.gene09777:CDS |
| ATCTGACACTCAGAAGCAGG+AGG | 0.692727 | 5.3:+6016782 | None:intergenic |
| ACTTAACAGTAGAAGCGACA+CGG | 0.702641 | 5.3:+6017222 | None:intergenic |
| AACCACAGAAGCCAACGCGG+AGG | 0.719869 | 5.3:+6017352 | None:intergenic |
| AGCAACCACAGAAGCCAACG+CGG | 0.728782 | 5.3:+6017349 | None:intergenic |
| TGCATTACGATGGAAACATG+TGG | 0.750334 | 5.3:-6016616 | MS.gene09777:CDS |
| ATAAGATGCTAAGAGCTGTG+TGG | 0.765894 | 5.3:+6017283 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAATTCATAGATTTTT+CGG | + | chr5.3:6018677-6018696 | None:intergenic | 10.0% |
| !!! | AGAAAACAATGTTTTAAAAA+CGG | + | chr5.3:6017776-6017795 | None:intergenic | 15.0% |
| !!! | TGATTTTTACAATTACATAA+TGG | + | chr5.3:6018402-6018421 | None:intergenic | 15.0% |
| !!! | TTGTATTTATCTTAATTTTC+AGG | - | chr5.3:6018244-6018263 | MS.gene09777:intron | 15.0% |
| !! | AAGTATTTGTGAGATTATTT+AGG | + | chr5.3:6016812-6016831 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTTATCCAAAC+AGG | - | chr5.3:6017052-6017071 | MS.gene09777:intron | 20.0% |
| !! | CCTAAAAACAAAAATTTAAG+AGG | - | chr5.3:6018201-6018220 | MS.gene09777:intron | 20.0% |
| !! | TCAAATAAATCAATCCAAAT+AGG | + | chr5.3:6016404-6016423 | None:intergenic | 20.0% |
| !! | TTAAGTTATTTATCCAAACA+GGG | - | chr5.3:6017053-6017072 | MS.gene09777:intron | 20.0% |
| !!! | AAAATTTAAGAGGTGAATTT+TGG | - | chr5.3:6018211-6018230 | MS.gene09777:intron | 20.0% |
| !!! | ATGCTTACATTTATTCTTTT+TGG | + | chr5.3:6018312-6018331 | None:intergenic | 20.0% |
| !!! | CCTCTTAAATTTTTGTTTTT+AGG | + | chr5.3:6018204-6018223 | None:intergenic | 20.0% |
| !!! | TAGTCTTTTGCTTAATTTTT+AGG | + | chr5.3:6017110-6017129 | None:intergenic | 20.0% |
| ! | AAGAACCATAAAGAAATTTC+TGG | + | chr5.3:6018431-6018450 | None:intergenic | 25.0% |
| ! | ATAAAGAGTAACAACATGTT+TGG | - | chr5.3:6017157-6017176 | MS.gene09777:intron | 25.0% |
| ! | ATGGATCAAAAAAATGAAAG+TGG | - | chr5.3:6016061-6016080 | MS.gene09777:CDS | 25.0% |
| ! | GTAAGTTGTAAGATTTGATA+TGG | - | chr5.3:6017802-6017821 | MS.gene09777:intron | 25.0% |
| ! | TTACATCAACAAGAAATATC+AGG | - | chr5.3:6018164-6018183 | MS.gene09777:intron | 25.0% |
| ! | TTGATATGGAACAATATTGA+TGG | - | chr5.3:6017816-6017835 | MS.gene09777:intron | 25.0% |
| ! | TTTCTCCAGAAATTTCTTTA+TGG | - | chr5.3:6018423-6018442 | MS.gene09777:intron | 25.0% |
| !! | ACTATTTTCATAAGCTATTC+TGG | - | chr5.3:6016734-6016753 | MS.gene09777:CDS | 25.0% |
| !! | ACTCTTTATTTGTCTATATC+TGG | + | chr5.3:6017146-6017165 | None:intergenic | 25.0% |
| !! | CTCTTTATTTGTCTATATCT+GGG | + | chr5.3:6017145-6017164 | None:intergenic | 25.0% |
| !! | TACTTAATGCATTTTAGATC+AGG | - | chr5.3:6016827-6016846 | MS.gene09777:CDS | 25.0% |
| !! | TAGTTGATGTATTTCATTTC+AGG | - | chr5.3:6018114-6018133 | MS.gene09777:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr5.3:6016632-6016651 | None:intergenic | 25.0% |
| AAACAAATTGTGACCATGTT+TGG | - | chr5.3:6016616-6016635 | MS.gene09777:CDS | 30.0% | |
| AAAGTGGTATGTTTCAACAT+TGG | - | chr5.3:6016077-6016096 | MS.gene09777:CDS | 30.0% | |
| AACTGACATTATCTATGGTT+TGG | - | chr5.3:6017703-6017722 | MS.gene09777:intron | 30.0% | |
| AATAAGCTTACCGTTAATTG+AGG | + | chr5.3:6016346-6016365 | None:intergenic | 30.0% | |
| ACCATTTACTAATTGTCGAA+TGG | - | chr5.3:6017249-6017268 | MS.gene09777:CDS | 30.0% | |
| AGCATCTTATTGTGTTGAAA+TGG | - | chr5.3:6017483-6017502 | MS.gene09777:CDS | 30.0% | |
| ATGTTTCAACATTGGAGAAA+AGG | - | chr5.3:6016085-6016104 | MS.gene09777:CDS | 30.0% | |
| ATTATTGTAGGTGTGGTTTA+TGG | - | chr5.3:6018469-6018488 | MS.gene09777:CDS | 30.0% | |
| CCATTTACTAATTGTCGAAT+GGG | - | chr5.3:6017250-6017269 | MS.gene09777:CDS | 30.0% | |
| GAGTCTAGATTGATTATTGT+AGG | - | chr5.3:6018457-6018476 | MS.gene09777:CDS | 30.0% | |
| GATGGAATAGAATTTCTACT+TGG | - | chr5.3:6018628-6018647 | MS.gene09777:CDS | 30.0% | |
| GCTTATGGACGTTTAATAAA+CGG | + | chr5.3:6016481-6016500 | None:intergenic | 30.0% | |
| TAGATTGATTATTGTAGGTG+TGG | - | chr5.3:6018462-6018481 | MS.gene09777:CDS | 30.0% | |
| TAGTGACAATCACTCTAAAT+TGG | - | chr5.3:6017429-6017448 | MS.gene09777:CDS | 30.0% | |
| ! | AAACATGGTCACAATTTGTT+TGG | + | chr5.3:6016617-6016636 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAACAGCTTG+TGG | - | chr5.3:6016770-6016789 | MS.gene09777:CDS | 30.0% |
| ! | AATAAGTTGAAGACAGCTTA+AGG | + | chr5.3:6016895-6016914 | None:intergenic | 30.0% |
| ! | ATAAGTTGAAGACAGCTTAA+GGG | + | chr5.3:6016894-6016913 | None:intergenic | 30.0% |
| ! | ATGGAACAATATTGATGGTT+TGG | - | chr5.3:6017821-6017840 | MS.gene09777:intron | 30.0% |
| ! | GCATTTTTCTTTGCTTCTTT+TGG | + | chr5.3:6017905-6017924 | None:intergenic | 30.0% |
| !!! | GTTCAATTACGATTTTTTCG+TGG | - | chr5.3:6017737-6017756 | MS.gene09777:intron | 30.0% |
| AACATTGGAGAAAAGGATCA+TGG | - | chr5.3:6016092-6016111 | MS.gene09777:CDS | 35.0% | |
| AAGATCAAAAGCAAGCACAT+TGG | - | chr5.3:6018275-6018294 | MS.gene09777:intron | 35.0% | |
| AATTGTCGAATGGGTACTAT+TGG | - | chr5.3:6017259-6017278 | MS.gene09777:CDS | 35.0% | |
| AGAGTAACAACATGTTTGGT+TGG | - | chr5.3:6017161-6017180 | MS.gene09777:intron | 35.0% | |
| ATGCAAACACTTCTGTTAAG+AGG | - | chr5.3:6017317-6017336 | MS.gene09777:CDS | 35.0% | |
| ATGGCCATACAGAAAAGAAA+GGG | - | chr5.3:6018513-6018532 | MS.gene09777:CDS | 35.0% | |
| CAAACTCCACAAGCAAAAAT+GGG | - | chr5.3:6018603-6018622 | MS.gene09777:CDS | 35.0% | |
| CAATACATTTCAGGCCTATT+TGG | - | chr5.3:6016387-6016406 | MS.gene09777:intron | 35.0% | |
| CCCATTCGACAATTAGTAAA+TGG | + | chr5.3:6017253-6017272 | None:intergenic | 35.0% | |
| CTCTAAATTGGATGTTGCTA+TGG | - | chr5.3:6017441-6017460 | MS.gene09777:CDS | 35.0% | |
| CTGTGAACTGACATTATCTA+TGG | - | chr5.3:6017698-6017717 | MS.gene09777:intron | 35.0% | |
| GAATGGGTACTATTGGAAAA+TGG | - | chr5.3:6017266-6017285 | MS.gene09777:CDS | 35.0% | |
| GCTGTTCTTATAAACTATCC+TGG | + | chr5.3:6016930-6016949 | None:intergenic | 35.0% | |
| GTTGACTAGCAATACATTTC+AGG | - | chr5.3:6016378-6016397 | MS.gene09777:intron | 35.0% | |
| TAAGACTCATGAAACATTGC+CGG | - | chr5.3:6016306-6016325 | MS.gene09777:intron | 35.0% | |
| TACTCGCATAAGTATTTGTG+AGG | - | chr5.3:6016431-6016450 | MS.gene09777:intron | 35.0% | |
| !! | ACTTACATCAGAAGCATCAT+GGG | - | chr5.3:6017293-6017312 | MS.gene09777:CDS | 35.0% |
| !! | CTTATTTTCATAAGCTCTCC+AGG | - | chr5.3:6016909-6016928 | MS.gene09777:intron | 35.0% |
| !! | GCTTCTGAAGATCTCTATTT+TGG | - | chr5.3:6018538-6018557 | MS.gene09777:CDS | 35.0% |
| !! | TGTTTCATGTAAGCTTTGAG+AGG | - | chr5.3:6017854-6017873 | MS.gene09777:intron | 35.0% |
| !! | TTCTGCTTCTGAGATTTCAA+AGG | - | chr5.3:6016249-6016268 | MS.gene09777:CDS | 35.0% |
| !!! | TTTTTTCGTGGTTCAATGTC+TGG | - | chr5.3:6017749-6017768 | MS.gene09777:intron | 35.0% |
| AACTCAACCAGACAGTTCAA+CGG | - | chr5.3:6017663-6017682 | MS.gene09777:intron | 40.0% | |
| ACTTAACAGTAGAAGCGACA+CGG | + | chr5.3:6017534-6017553 | None:intergenic | 40.0% | |
| ATAAGATGCTAAGAGCTGTG+TGG | + | chr5.3:6017473-6017492 | None:intergenic | 40.0% | |
| ATCAAAAGCAAGCACATTGG+AGG | - | chr5.3:6018278-6018297 | MS.gene09777:intron | 40.0% | |
| CATGGCCATACAGAAAAGAA+AGG | - | chr5.3:6018512-6018531 | MS.gene09777:CDS | 40.0% | |
| CATTCTGCACTATCAATTGC+CGG | - | chr5.3:6017373-6017392 | MS.gene09777:CDS | 40.0% | |
| GATCTAGACAAGAACTCCAT+AGG | + | chr5.3:6016220-6016239 | None:intergenic | 40.0% | |
| GATTTCTGCGCCTCAATTAA+CGG | - | chr5.3:6016333-6016352 | MS.gene09777:intron | 40.0% | |
| GCAAACTCCACAAGCAAAAA+TGG | - | chr5.3:6018602-6018621 | MS.gene09777:CDS | 40.0% | |
| GTAAATGGTATGAGCTTTCC+AGG | + | chr5.3:6017238-6017257 | None:intergenic | 40.0% | |
| GTAAGAGTCATTAGATCACC+TGG | + | chr5.3:6017577-6017596 | None:intergenic | 40.0% | |
| TAAACGTCCATAAGCTCTCA+GGG | - | chr5.3:6016486-6016505 | MS.gene09777:CDS | 40.0% | |
| TCAATAAGTCCCTACGATAG+AGG | - | chr5.3:6017926-6017945 | MS.gene09777:intron | 40.0% | |
| TCTGCTATTCCTCTATCGTA+GGG | + | chr5.3:6017938-6017957 | None:intergenic | 40.0% | |
| TGCATTACGATGGAAACATG+TGG | - | chr5.3:6018137-6018156 | MS.gene09777:intron | 40.0% | |
| TTAAACGTCCATAAGCTCTC+AGG | - | chr5.3:6016485-6016504 | MS.gene09777:CDS | 40.0% | |
| TTCCCATATACTCTTCCAGA+CGG | + | chr5.3:6016458-6016477 | None:intergenic | 40.0% | |
| TTCTGCTATTCCTCTATCGT+AGG | + | chr5.3:6017939-6017958 | None:intergenic | 40.0% | |
| TTGTTGCAGGTTACGGAAAA+AGG | - | chr5.3:6018028-6018047 | MS.gene09777:intron | 40.0% | |
| ! | CTAATGCTATTTGCCCTGTT+TGG | + | chr5.3:6017069-6017088 | None:intergenic | 40.0% |
| ! | CTATGGTTTGGCTATTTGAG+TGG | - | chr5.3:6017715-6017734 | MS.gene09777:intron | 40.0% |
| ! | GCTTCCCTTTCTTTTCTGTA+TGG | + | chr5.3:6018520-6018539 | None:intergenic | 40.0% |
| ! | TCATTTCAGGTGCATTACGA+TGG | - | chr5.3:6018127-6018146 | MS.gene09777:intron | 40.0% |
| !! | CACAAGCAAAAATGGGTTGA+TGG | - | chr5.3:6018610-6018629 | MS.gene09777:CDS | 40.0% |
| !! | CACTTACATCAGAAGCATCA+TGG | - | chr5.3:6017292-6017311 | MS.gene09777:CDS | 40.0% |
| !! | CATCAACCCATTTTTGCTTG+TGG | + | chr5.3:6018612-6018631 | None:intergenic | 40.0% |
| AAAGGATCATGGCAATGGCA+AGG | - | chr5.3:6016103-6016122 | MS.gene09777:CDS | 45.0% | |
| AACATCTGACACTCAGAAGC+AGG | + | chr5.3:6017977-6017996 | None:intergenic | 45.0% | |
| AAGAACTCCATAGGCTCAAG+AGG | + | chr5.3:6016211-6016230 | None:intergenic | 45.0% | |
| AAGGATCATGGCAATGGCAA+GGG | - | chr5.3:6016104-6016123 | MS.gene09777:CDS | 45.0% | |
| AAGTATTTGTGAGGTCCGTC+TGG | - | chr5.3:6016440-6016459 | MS.gene09777:intron | 45.0% | |
| AAGTTGTCCCTGAGAGCTTA+TGG | + | chr5.3:6016496-6016515 | None:intergenic | 45.0% | |
| CGCTTCTACTGTTAAGTCTG+CGG | - | chr5.3:6017537-6017556 | MS.gene09777:intron | 45.0% | |
| GGAGAAAAGGATCATGGCAA+TGG | - | chr5.3:6016098-6016117 | MS.gene09777:CDS | 45.0% | |
| GTTGAAATGGCAGAGTTAGC+AGG | - | chr5.3:6017496-6017515 | MS.gene09777:CDS | 45.0% | |
| TGGAGTTCTTGTCTAGATCC+TGG | - | chr5.3:6016221-6016240 | MS.gene09777:CDS | 45.0% | |
| TGTGTAACGAAGACTCTGCA+TGG | - | chr5.3:6018494-6018513 | MS.gene09777:CDS | 45.0% | |
| TTTGGCCTCAAAACTGCACA+AGG | - | chr5.3:6018556-6018575 | MS.gene09777:CDS | 45.0% | |
| ! | GAAGACCTTGTGCAGTTTTG+AGG | + | chr5.3:6018564-6018583 | None:intergenic | 45.0% |
| ! | GTCCGTCTGGAAGAGTATAT+GGG | - | chr5.3:6016453-6016472 | MS.gene09777:CDS | 45.0% |
| ! | TGTGTTCATCTTTTGCAGCC+TGG | - | chr5.3:6017217-6017236 | MS.gene09777:CDS | 45.0% |
| !! | GGGAGATTTGTTGCAGGTTA+CGG | - | chr5.3:6018021-6018040 | MS.gene09777:intron | 45.0% |
| AATCTCCCTCGCATGGAGAA+TGG | + | chr5.3:6018009-6018028 | None:intergenic | 50.0% | |
| ACCAACACCTCTTGAGCCTA+TGG | - | chr5.3:6016201-6016220 | MS.gene09777:CDS | 50.0% | |
| ATCTGACACTCAGAAGCAGG+AGG | + | chr5.3:6017974-6017993 | None:intergenic | 50.0% | |
| CGTTCAACCGTTGAACTGTC+TGG | + | chr5.3:6017673-6017692 | None:intergenic | 50.0% | |
| CTCAGAAGCAGAAAGACTCC+AGG | + | chr5.3:6016242-6016261 | None:intergenic | 50.0% | |
| GAGAACCATTCTCCATGCGA+GGG | - | chr5.3:6018001-6018020 | MS.gene09777:intron | 50.0% | |
| TGAGAACCATTCTCCATGCG+AGG | - | chr5.3:6018000-6018019 | MS.gene09777:intron | 50.0% | |
| TGAGGCGCAGAAATCACTTC+CGG | + | chr5.3:6016328-6016347 | None:intergenic | 50.0% | |
| TGCAACAAATCTCCCTCGCA+TGG | + | chr5.3:6018016-6018035 | None:intergenic | 50.0% | |
| ! | GGTCCGTCTGGAAGAGTATA+TGG | - | chr5.3:6016452-6016471 | MS.gene09777:CDS | 50.0% |
| ! | TCCATAGGCTCAAGAGGTGT+TGG | + | chr5.3:6016205-6016224 | None:intergenic | 50.0% |
| !! | ATAGGCTCAAGAGGTGTTGG+TGG | + | chr5.3:6016202-6016221 | None:intergenic | 50.0% |
| !! | ATGCGAGGGAGATTTGTTGC+AGG | - | chr5.3:6018015-6018034 | MS.gene09777:intron | 50.0% |
| !! | GTTGGTGGCTCAGGAATTTC+TGG | + | chr5.3:6016187-6016206 | None:intergenic | 50.0% |
| AGCAACCACAGAAGCCAACG+CGG | + | chr5.3:6017407-6017426 | None:intergenic | 55.0% | |
| CTTACTGCTGCAGCTGCAAC+AGG | - | chr5.3:6017592-6017611 | MS.gene09777:intron | 55.0% | |
| GCGGTCGATATTCAAACGCC+AGG | - | chr5.3:6017556-6017575 | MS.gene09777:intron | 55.0% | |
| !! | TCAAGAGGTGTTGGTGGCTC+AGG | + | chr5.3:6016196-6016215 | None:intergenic | 55.0% |
| AACCACAGAAGCCAACGCGG+AGG | + | chr5.3:6017404-6017423 | None:intergenic | 60.0% | |
| ! | AGCCAACGCGGAGGCTAGTC+CGG | + | chr5.3:6017395-6017414 | None:intergenic | 65.0% |
| !! | AGCCTCCGCGTTGGCTTCTG+TGG | - | chr5.3:6017399-6017418 | MS.gene09777:CDS | 65.0% |
| !! | TGCCGGACTAGCCTCCGCGT+TGG | - | chr5.3:6017390-6017409 | MS.gene09777:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6016058 | 6018717 | 6016058 | ID=MS.gene09777 |
| chr5.3 | mRNA | 6016058 | 6018717 | 6016058 | ID=MS.gene09777.t1;Parent=MS.gene09777 |
| chr5.3 | exon | 6018445 | 6018717 | 6018445 | ID=MS.gene09777.t1.exon1;Parent=MS.gene09777.t1 |
| chr5.3 | CDS | 6018445 | 6018717 | 6018445 | ID=cds.MS.gene09777.t1;Parent=MS.gene09777.t1 |
| chr5.3 | exon | 6017162 | 6017540 | 6017162 | ID=MS.gene09777.t1.exon2;Parent=MS.gene09777.t1 |
| chr5.3 | CDS | 6017162 | 6017540 | 6017162 | ID=cds.MS.gene09777.t1;Parent=MS.gene09777.t1 |
| chr5.3 | exon | 6016726 | 6016908 | 6016726 | ID=MS.gene09777.t1.exon3;Parent=MS.gene09777.t1 |
| chr5.3 | CDS | 6016726 | 6016908 | 6016726 | ID=cds.MS.gene09777.t1;Parent=MS.gene09777.t1 |
| chr5.3 | exon | 6016590 | 6016639 | 6016590 | ID=MS.gene09777.t1.exon4;Parent=MS.gene09777.t1 |
| chr5.3 | CDS | 6016590 | 6016639 | 6016590 | ID=cds.MS.gene09777.t1;Parent=MS.gene09777.t1 |
| chr5.3 | exon | 6016452 | 6016509 | 6016452 | ID=MS.gene09777.t1.exon5;Parent=MS.gene09777.t1 |
| chr5.3 | CDS | 6016452 | 6016509 | 6016452 | ID=cds.MS.gene09777.t1;Parent=MS.gene09777.t1 |
| chr5.3 | exon | 6016058 | 6016296 | 6016058 | ID=MS.gene09777.t1.exon6;Parent=MS.gene09777.t1 |
| chr5.3 | CDS | 6016058 | 6016296 | 6016058 | ID=cds.MS.gene09777.t1;Parent=MS.gene09777.t1 |
| Gene Sequence |
| Protein sequence |
