Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20198.t1 | XP_024628478.1 | 98.3 | 647 | 11 | 0 | 1 | 647 | 68 | 714 | 0.00E+00 | 1175.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20198.t1 | Q498F0 | 31.2 | 349 | 213 | 12 | 199 | 534 | 512 | 846 | 9.0e-31 | 136.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20198.t1 | A0A072U627 | 98.3 | 647 | 11 | 0 | 1 | 647 | 68 | 714 | 0.0e+00 | 1175.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049801 | MS.gene20198 | 0.831163 | 1.95E-55 | -1.69E-46 |
| MS.gene04991 | MS.gene20198 | -0.809037 | 2.31E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene20198 | 0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene20198 | 0.842772 | 2.11E-58 | -1.69E-46 |
| MS.gene050737 | MS.gene20198 | 0.825818 | 3.81E-54 | -1.69E-46 |
| MS.gene050941 | MS.gene20198 | 0.860215 | 2.41E-63 | -1.69E-46 |
| MS.gene051122 | MS.gene20198 | 0.8091 | 2.24E-50 | -1.69E-46 |
| MS.gene051184 | MS.gene20198 | 0.803895 | 2.80E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene20198 | 0.844242 | 8.54E-59 | -1.69E-46 |
| MS.gene05216 | MS.gene20198 | 0.812715 | 3.69E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene20198 | 0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene052674 | MS.gene20198 | 0.85065 | 1.48E-60 | -1.69E-46 |
| MS.gene052675 | MS.gene20198 | 0.844573 | 6.95E-59 | -1.69E-46 |
| MS.gene052677 | MS.gene20198 | 0.847956 | 8.33E-60 | -1.69E-46 |
| MS.gene05350 | MS.gene20198 | 0.824964 | 6.07E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene20198 | 0.833723 | 4.53E-56 | -1.69E-46 |
| MS.gene055864 | MS.gene20198 | 0.847025 | 1.50E-59 | -1.69E-46 |
| MS.gene055926 | MS.gene20198 | 0.804105 | 2.53E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene20198 | 0.825277 | 5.12E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene20198 | 0.812779 | 3.57E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene20198 | 0.846074 | 2.73E-59 | -1.69E-46 |
| MS.gene058223 | MS.gene20198 | -0.814797 | 1.28E-51 | -1.69E-46 |
| MS.gene058278 | MS.gene20198 | 0.811911 | 5.52E-51 | -1.69E-46 |
| MS.gene058429 | MS.gene20198 | 0.857862 | 1.22E-62 | -1.69E-46 |
| MS.gene059283 | MS.gene20198 | 0.809518 | 1.82E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene20198 | 0.802476 | 5.51E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene20198 | 0.814738 | 1.32E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene20198 | 0.836835 | 7.41E-57 | -1.69E-46 |
| MS.gene060777 | MS.gene20198 | 0.80262 | 5.14E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene20198 | 0.819923 | 9.00E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene20198 | 0.831877 | 1.30E-55 | -1.69E-46 |
| MS.gene060852 | MS.gene20198 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene20198 | 0.858738 | 6.70E-63 | -1.69E-46 |
| MS.gene06121 | MS.gene20198 | 0.977999 | 6.47E-145 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20198.t1 | MTR_8g100005 | 98.918 | 647 | 7 | 0 | 1 | 647 | 68 | 714 | 0.0 | 1313 |
| MS.gene20198.t1 | MTR_8g100005 | 97.857 | 420 | 9 | 0 | 1 | 420 | 68 | 487 | 0.0 | 841 |
| MS.gene20198.t1 | MTR_1g007740 | 53.565 | 519 | 229 | 5 | 137 | 645 | 191 | 707 | 0.0 | 543 |
| MS.gene20198.t1 | MTR_3g491920 | 48.940 | 566 | 264 | 9 | 99 | 647 | 145 | 702 | 0.0 | 533 |
| MS.gene20198.t1 | MTR_2g079740 | 36.364 | 660 | 336 | 17 | 65 | 647 | 206 | 858 | 5.24e-126 | 393 |
| MS.gene20198.t1 | MTR_8g092890 | 39.715 | 491 | 238 | 7 | 170 | 647 | 200 | 645 | 3.02e-111 | 348 |
| MS.gene20198.t1 | MTR_3g095780 | 40.787 | 483 | 255 | 7 | 174 | 647 | 168 | 628 | 3.95e-104 | 329 |
| MS.gene20198.t1 | MTR_7g060420 | 38.812 | 505 | 265 | 11 | 70 | 538 | 268 | 764 | 8.09e-96 | 317 |
| MS.gene20198.t1 | MTR_4g119620 | 28.959 | 221 | 141 | 9 | 293 | 506 | 66 | 277 | 1.48e-17 | 84.7 |
| MS.gene20198.t1 | MTR_1g072140 | 38.843 | 121 | 70 | 4 | 298 | 415 | 62 | 181 | 1.54e-17 | 84.3 |
| MS.gene20198.t1 | MTR_5g016370 | 25.217 | 230 | 136 | 8 | 199 | 395 | 346 | 572 | 4.05e-11 | 66.6 |
| MS.gene20198.t1 | MTR_6g004040 | 22.917 | 240 | 159 | 8 | 191 | 405 | 7 | 245 | 6.80e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20198.t1 | AT5G24320 | 51.407 | 533 | 233 | 11 | 126 | 647 | 177 | 694 | 5.72e-170 | 501 |
| MS.gene20198.t1 | AT5G24320 | 51.024 | 537 | 233 | 12 | 126 | 647 | 177 | 698 | 6.91e-168 | 496 |
| MS.gene20198.t1 | AT5G53500 | 47.963 | 540 | 242 | 12 | 120 | 645 | 138 | 652 | 2.82e-161 | 478 |
| MS.gene20198.t1 | AT5G53500 | 47.963 | 540 | 242 | 12 | 120 | 645 | 138 | 652 | 2.82e-161 | 478 |
| MS.gene20198.t1 | AT1G64610 | 49.904 | 521 | 218 | 14 | 137 | 647 | 160 | 647 | 8.27e-159 | 471 |
| MS.gene20198.t1 | AT1G64610 | 49.904 | 521 | 218 | 14 | 137 | 647 | 160 | 647 | 8.27e-159 | 471 |
| MS.gene20198.t1 | AT5G42010 | 49.436 | 532 | 236 | 14 | 135 | 647 | 192 | 709 | 8.29e-154 | 461 |
| MS.gene20198.t1 | AT5G54200 | 37.364 | 645 | 327 | 15 | 65 | 647 | 196 | 825 | 2.67e-124 | 388 |
| MS.gene20198.t1 | AT3G15470 | 36.031 | 655 | 326 | 12 | 69 | 647 | 246 | 883 | 1.93e-121 | 382 |
| MS.gene20198.t1 | AT5G42010 | 53.930 | 369 | 154 | 9 | 137 | 497 | 194 | 554 | 4.55e-121 | 372 |
| MS.gene20198.t1 | AT1G48870 | 39.069 | 494 | 238 | 12 | 159 | 644 | 152 | 590 | 3.59e-96 | 308 |
| MS.gene20198.t1 | AT1G48870 | 39.069 | 494 | 238 | 12 | 159 | 644 | 152 | 590 | 3.59e-96 | 308 |
| MS.gene20198.t1 | AT1G48870 | 39.069 | 494 | 238 | 12 | 159 | 644 | 152 | 590 | 3.59e-96 | 308 |
| MS.gene20198.t1 | AT5G02430 | 38.095 | 504 | 279 | 8 | 70 | 541 | 257 | 759 | 1.66e-89 | 298 |
| MS.gene20198.t1 | AT2G37670 | 37.376 | 503 | 275 | 9 | 70 | 540 | 248 | 742 | 8.35e-87 | 290 |
| MS.gene20198.t1 | AT2G37670 | 37.376 | 503 | 275 | 9 | 70 | 540 | 247 | 741 | 9.38e-87 | 290 |
| MS.gene20198.t1 | AT3G49660 | 25.625 | 320 | 164 | 12 | 194 | 506 | 18 | 270 | 3.56e-18 | 86.7 |
| MS.gene20198.t1 | AT4G02730 | 30.275 | 218 | 135 | 8 | 298 | 507 | 78 | 286 | 8.49e-16 | 79.7 |
| MS.gene20198.t1 | AT2G16405 | 26.250 | 240 | 135 | 10 | 298 | 509 | 209 | 434 | 1.10e-12 | 71.2 |
Find 149 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGATCACTGGCTTTC+AGG | 0.190247 | 4.4:+4357563 | MS.gene20198:CDS |
| GACATGTATGATAAAGAATT+TGG | 0.204178 | 4.4:+4355425 | MS.gene20198:CDS |
| GAAAGGTTGGTTAAGCAAAT+TGG | 0.204304 | 4.4:+4355644 | MS.gene20198:CDS |
| TCAGTAGAGGGAGATGAGTT+TGG | 0.239805 | 4.4:+4355249 | MS.gene20198:CDS |
| AGAATATGTTGTAGATAAAT+TGG | 0.240063 | 4.4:+4355458 | MS.gene20198:CDS |
| GAACGGGTAAGCCGTAATTT+TGG | 0.244647 | 4.4:-4359015 | None:intergenic |
| ACTTGATACTCTGCGCGTTC+TGG | 0.250935 | 4.4:+4355494 | MS.gene20198:CDS |
| TAGTCTTGATGGAAAATATT+TGG | 0.252616 | 4.4:+4355848 | MS.gene20198:CDS |
| TTCAAAATGAATCAGTTTAC+TGG | 0.257489 | 4.4:+4355972 | MS.gene20198:CDS |
| CAGTGACCCGACCAAATTAT+TGG | 0.261934 | 4.4:+4357703 | MS.gene20198:CDS |
| ACCAATATGCGGAAGGTCTT+TGG | 0.274787 | 4.4:-4356086 | None:intergenic |
| GCAACAAAGACTTTGATTCT+AGG | 0.295537 | 4.4:+4355715 | MS.gene20198:CDS |
| TTTAGATAATCATATGAAAA+TGG | 0.299019 | 4.4:+4357500 | MS.gene20198:intron |
| ACGATGAAGTTTAGTCTTGA+TGG | 0.308276 | 4.4:+4355837 | MS.gene20198:CDS |
| TTCATCAGTGGTTCAATTGA+TGG | 0.314804 | 4.4:+4356584 | MS.gene20198:CDS |
| GGCCATGTTGCAGAAACCTT+TGG | 0.326831 | 4.4:-4358833 | None:intergenic |
| CAATAATTTGGTCGGGTCAC+TGG | 0.327839 | 4.4:-4357702 | None:intergenic |
| GACCTTGCATGGTCTAAATC+AGG | 0.328014 | 4.4:+4356152 | MS.gene20198:CDS |
| ATCAAATGAATTGAACATTC+TGG | 0.330017 | 4.4:+4355926 | MS.gene20198:CDS |
| TGAACATAGTCCGGCTTATT+CGG | 0.332677 | 4.4:-4355296 | None:intergenic |
| TTGATGGAAAGGTGCGCATC+TGG | 0.334930 | 4.4:+4356600 | MS.gene20198:CDS |
| AAGGTTCAAATGTTTGTATC+TGG | 0.353017 | 4.4:+4358597 | MS.gene20198:CDS |
| GGCAGAAGCAACCAATAATT+TGG | 0.358161 | 4.4:-4357714 | None:intergenic |
| ACCAAAGACCTTCCGCATAT+TGG | 0.359459 | 4.4:+4356085 | MS.gene20198:CDS |
| GCCATGTTGCAGAAACCTTT+GGG | 0.371744 | 4.4:-4358832 | None:intergenic |
| TAGTCACAGCTGTATGCTTC+TGG | 0.372614 | 4.4:+4356669 | MS.gene20198:CDS |
| GAAACCTTTGCATGAATTCC+AGG | 0.374086 | 4.4:+4356109 | MS.gene20198:CDS |
| TTCGTCTCTTTACACTGAAC+AGG | 0.381545 | 4.4:+4355785 | MS.gene20198:CDS |
| GCTGTATGCTTCTGGCCTAA+TGG | 0.381687 | 4.4:+4356677 | MS.gene20198:CDS |
| ATAAGAGTGTACCAAAATTA+CGG | 0.388172 | 4.4:+4359004 | MS.gene20198:CDS |
| CTTTGGAAGTATTCCTATCC+TGG | 0.393529 | 4.4:-4358631 | None:intergenic |
| ATAAGGAATCCAACACAATC+TGG | 0.399390 | 4.4:-4355350 | None:intergenic |
| CTTGATACTCTGCGCGTTCT+GGG | 0.416640 | 4.4:+4355495 | MS.gene20198:CDS |
| TACTCTGATTTACATATTGT+AGG | 0.426782 | 4.4:-4358896 | None:intergenic |
| ATCCTGCTGTTACAATTACT+TGG | 0.427810 | 4.4:-4358970 | None:intergenic |
| ATTTATCTTTATCTACATCA+AGG | 0.437689 | 4.4:-4356007 | None:intergenic |
| ACGAAACAGACCTGTCCATT+AGG | 0.440547 | 4.4:-4356692 | None:intergenic |
| ACTCTTCGAAACTAATCAAC+TGG | 0.447238 | 4.4:-4355524 | None:intergenic |
| CCTAAAAGCCTCGTTTGATA+AGG | 0.450704 | 4.4:-4355367 | None:intergenic |
| AAAAGAAGACATCGGGGAAA+AGG | 0.457722 | 4.4:+4357547 | MS.gene20198:CDS |
| AGAGGAGACGCTTCTTGACT+CGG | 0.461351 | 4.4:+4358856 | MS.gene20198:CDS |
| TTGATAAGACTGTGCGCCTA+TGG | 0.462409 | 4.4:+4356312 | MS.gene20198:CDS |
| AATGTCTAATTCTCACTTGT+GGG | 0.462495 | 4.4:+4358946 | MS.gene20198:CDS |
| TACCTAGGATATTATAGAAA+CGG | 0.466354 | 4.4:-4356826 | None:intergenic |
| GAGTCAAGAAGCGTCTCCTC+TGG | 0.472846 | 4.4:-4358854 | None:intergenic |
| ACAATCGTGGGTACCATGAC+GGG | 0.475328 | 4.4:+4356797 | MS.gene20198:CDS |
| AATAATTTGGTCGGGTCACT+GGG | 0.476368 | 4.4:-4357701 | None:intergenic |
| AAAAGAAGATGAAGAAAGGT+TGG | 0.476424 | 4.4:+4355631 | MS.gene20198:CDS |
| ACTGTGTTTCAAACACGAAC+GGG | 0.476742 | 4.4:-4359031 | None:intergenic |
| TCCGCATAAGAAGCGAGTTA+AGG | 0.484492 | 4.4:+4355758 | MS.gene20198:CDS |
| TGTTGTAGATAAATTGGATC+AGG | 0.490135 | 4.4:+4355464 | MS.gene20198:CDS |
| ATGCTTCTGGCCTAATGGAC+AGG | 0.494162 | 4.4:+4356682 | MS.gene20198:CDS |
| TGCCGTTTCTATAATATCCT+AGG | 0.494721 | 4.4:+4356824 | MS.gene20198:CDS |
| GGATGGGTTTAGAGTATGAC+GGG | 0.497339 | 4.4:+4355223 | None:intergenic |
| TCACATGTCTGCATACTCTC+TGG | 0.498360 | 4.4:+4357740 | MS.gene20198:CDS |
| CCTTCAGGTCTGAGAAGTGC+AGG | 0.499062 | 4.4:+4358521 | MS.gene20198:intron |
| CTACAGTTCTGAACATAGTC+CGG | 0.501376 | 4.4:-4355305 | None:intergenic |
| GATTGTTTCTTCATGAGTCG+TGG | 0.503407 | 4.4:+4358791 | MS.gene20198:CDS |
| CGATGTCATCTACAAATTCA+AGG | 0.503602 | 4.4:+4357766 | MS.gene20198:CDS |
| CGGCATTGTTCGTGTGTGGC+AGG | 0.505198 | 4.4:+4355887 | MS.gene20198:CDS |
| CAATATGTAAATCAGAGTAT+AGG | 0.505786 | 4.4:+4358900 | MS.gene20198:CDS |
| CGACTCATGAAGAAACAATC+AGG | 0.505926 | 4.4:-4358788 | None:intergenic |
| AAATGTCATCACTATGCCCC+TGG | 0.507029 | 4.4:-4356127 | None:intergenic |
| ATCCAACACAATCTGGTTTG+AGG | 0.511924 | 4.4:-4355343 | None:intergenic |
| ACAATCTGGTTTGAGGTTGA+CGG | 0.512441 | 4.4:-4355336 | None:intergenic |
| CATGCTTCCTTCACCTCTGA+CGG | 0.513578 | 4.4:+4358551 | MS.gene20198:CDS |
| CTGTGCGCCTATGGCAAGTA+GGG | 0.519362 | 4.4:+4356321 | MS.gene20198:CDS |
| TATGGCGATTGTTGCATTGT+GGG | 0.520828 | 4.4:-4358687 | None:intergenic |
| ATTGTAACAGCAGGATCTGA+TGG | 0.521096 | 4.4:+4358977 | MS.gene20198:CDS |
| TAGTTAAAACAGAGAAGTTG+AGG | 0.521834 | 4.4:+4356030 | MS.gene20198:CDS |
| ACCTTGCATGGTCTAAATCA+GGG | 0.522984 | 4.4:+4356153 | MS.gene20198:CDS |
| GTTCTTGAGAAGTGCTTGCA+AGG | 0.527561 | 4.4:+4358922 | MS.gene20198:CDS |
| GAGTATGCAGACATGTGAAT+CGG | 0.528548 | 4.4:-4357735 | None:intergenic |
| CTCAATGCCACACCAAGGTA+TGG | 0.530710 | 4.4:-4358705 | None:intergenic |
| CACAATCGTGGGTACCATGA+CGG | 0.531514 | 4.4:+4356796 | MS.gene20198:CDS |
| GGAATCACACTGGCCAGGAT+AGG | 0.531889 | 4.4:+4358618 | MS.gene20198:CDS |
| ATGTTTCCCGTCAGAGGTGA+AGG | 0.532807 | 4.4:-4358558 | None:intergenic |
| TACTGTGTTTCAAACACGAA+CGG | 0.537258 | 4.4:-4359032 | None:intergenic |
| TTTATCTTTATCTACATCAA+GGG | 0.538107 | 4.4:-4356006 | None:intergenic |
| AAGCAACCAATAATTTGGTC+GGG | 0.539367 | 4.4:-4357709 | None:intergenic |
| TGATGGAAAGGTGCGCATCT+GGG | 0.540440 | 4.4:+4356601 | MS.gene20198:CDS |
| TCCCAAAGGTTTCTGCAACA+TGG | 0.544159 | 4.4:+4358831 | MS.gene20198:CDS |
| CAGTGGTTCAATTGATGGAA+AGG | 0.546314 | 4.4:+4356589 | MS.gene20198:CDS |
| GAGGAGACGCTTCTTGACTC+GGG | 0.548597 | 4.4:+4358857 | MS.gene20198:CDS |
| AGAAACCTTTGGGACTAACT+CGG | 0.549739 | 4.4:-4358822 | None:intergenic |
| TTCTTGCAGGGCACAATCGT+GGG | 0.550141 | 4.4:+4356785 | MS.gene20198:intron |
| ATTCTTGCAGGGCACAATCG+TGG | 0.556688 | 4.4:+4356784 | MS.gene20198:intron |
| TATCTGGAATCACACTGGCC+AGG | 0.556850 | 4.4:+4358613 | MS.gene20198:CDS |
| ATGATAAAGAATTTGGATGA+TGG | 0.558307 | 4.4:+4355432 | MS.gene20198:CDS |
| GAATGTCTAATTCTCACTTG+TGG | 0.558938 | 4.4:+4358945 | MS.gene20198:CDS |
| TTGGCTAGTGGTGGTGAAGA+CGG | 0.559055 | 4.4:+4355867 | MS.gene20198:CDS |
| GGCCAAGTAATTGTAACAGC+AGG | 0.563283 | 4.4:+4358968 | MS.gene20198:CDS |
| ACTGTGCGCCTATGGCAAGT+AGG | 0.564256 | 4.4:+4356320 | MS.gene20198:CDS |
| ATGCTTCCTTCACCTCTGAC+GGG | 0.565698 | 4.4:+4358552 | MS.gene20198:CDS |
| ACATCGGGGAAAAGGATCAC+TGG | 0.566458 | 4.4:+4357555 | MS.gene20198:CDS |
| TCTTTCCGAGTTAGTCCCAA+AGG | 0.567160 | 4.4:+4358817 | MS.gene20198:CDS |
| AACCTCAAACCAGATTGTGT+TGG | 0.569654 | 4.4:+4355341 | MS.gene20198:CDS |
| TCCTTAACTCGCTTCTTATG+CGG | 0.569981 | 4.4:-4355759 | None:intergenic |
| ATCAACTCTTCTCCGAGTGA+AGG | 0.570866 | 4.4:-4358743 | None:intergenic |
| GAAGCAACCAATAATTTGGT+CGG | 0.571251 | 4.4:-4357710 | None:intergenic |
| ATGCAACAATCGCCATACCT+TGG | 0.572180 | 4.4:+4358693 | MS.gene20198:CDS |
| GAAACGGCAATTGCCCGTCA+TGG | 0.575505 | 4.4:-4356810 | None:intergenic |
| GATGTCATCTACAAATTCAA+GGG | 0.575996 | 4.4:+4357767 | MS.gene20198:CDS |
| CAGCATCTCTCTGCAAATGT+CGG | 0.576515 | 4.4:-4355581 | None:intergenic |
| ATTCGGTCAACTCCACGAGA+TGG | 0.577374 | 4.4:-4355279 | None:intergenic |
| AATATGCGGAAGGTCTTTGG+TGG | 0.577709 | 4.4:-4356083 | None:intergenic |
| TTATCTTTATCTACATCAAG+GGG | 0.580035 | 4.4:-4356005 | None:intergenic |
| AGAAAATCACGATGATGGTA+CGG | 0.580064 | 4.4:+4355395 | MS.gene20198:CDS |
| TTCTTGAGAAGTGCTTGCAA+GGG | 0.580642 | 4.4:+4358923 | MS.gene20198:CDS |
| GACTATGTTCAGAACTGTAG+AGG | 0.583904 | 4.4:+4355308 | MS.gene20198:CDS |
| TTGTTAGAAAATCACGATGA+TGG | 0.584653 | 4.4:+4355390 | MS.gene20198:CDS |
| AAACCTTTGCATGAATTCCA+GGG | 0.585082 | 4.4:+4356110 | MS.gene20198:CDS |
| TGTAGATAAATTGGATCAGG+AGG | 0.585406 | 4.4:+4355467 | MS.gene20198:CDS |
| AACGATATGTTTCCCGTCAG+AGG | 0.585819 | 4.4:-4358564 | None:intergenic |
| GTATGACGGGAATTCAGTAG+AGG | 0.586966 | 4.4:+4355236 | MS.gene20198:CDS |
| ACGCCGTTGTCTCCTTCACT+CGG | 0.587598 | 4.4:+4358731 | MS.gene20198:CDS |
| CCCCTGATTTAGACCATGCA+AGG | 0.588804 | 4.4:-4356154 | None:intergenic |
| TGCTAATCCCTACTTGCCAT+AGG | 0.591922 | 4.4:-4356328 | None:intergenic |
| TGGATGGGTTTAGAGTATGA+CGG | 0.594137 | 4.4:+4355222 | None:intergenic |
| GTGGAGTTGACCGAATAAGC+CGG | 0.605397 | 4.4:+4355286 | MS.gene20198:CDS |
| TGCCCCTGGAATTCATGCAA+AGG | 0.607152 | 4.4:-4356113 | None:intergenic |
| CATATCGTTTCACTTAGTGA+AGG | 0.608284 | 4.4:+4358578 | MS.gene20198:CDS |
| TCGGAGAAGAGTTGATTCAA+AGG | 0.608586 | 4.4:+4358750 | MS.gene20198:CDS |
| TTTGGAGATGATCCATCTCG+TGG | 0.623691 | 4.4:+4355267 | MS.gene20198:CDS |
| TATGACGGGAATTCAGTAGA+GGG | 0.625707 | 4.4:+4355237 | MS.gene20198:CDS |
| GATGGAAAATATTTGGCTAG+TGG | 0.627924 | 4.4:+4355855 | MS.gene20198:CDS |
| CATTGTTCGTGTGTGGCAGG+TGG | 0.630831 | 4.4:+4355890 | MS.gene20198:CDS |
| AACCTTTGCATGAATTCCAG+GGG | 0.635723 | 4.4:+4356111 | MS.gene20198:CDS |
| GTAGATAAATTGGATCAGGA+GGG | 0.639429 | 4.4:+4355468 | MS.gene20198:CDS |
| AGGTTTCACCAATATGCGGA+AGG | 0.644387 | 4.4:-4356093 | None:intergenic |
| ATGTCTAATTCTCACTTGTG+GGG | 0.646372 | 4.4:+4358947 | MS.gene20198:CDS |
| GGAAAATATTTGGCTAGTGG+TGG | 0.647301 | 4.4:+4355858 | MS.gene20198:CDS |
| GAATCAGTTTACTGGTTGTG+TGG | 0.653240 | 4.4:+4355980 | MS.gene20198:CDS |
| CCTTGCATGGTCTAAATCAG+GGG | 0.660042 | 4.4:+4356154 | MS.gene20198:CDS |
| GTATGGCGATTGTTGCATTG+TGG | 0.662763 | 4.4:-4358688 | None:intergenic |
| AAGACGGCATTGTTCGTGTG+TGG | 0.662913 | 4.4:+4355883 | MS.gene20198:CDS |
| GTTGGATTCCTTATCAAACG+AGG | 0.665271 | 4.4:+4355359 | MS.gene20198:CDS |
| GGTTTCTGCAACATGGCCAG+AGG | 0.665832 | 4.4:+4358838 | MS.gene20198:CDS |
| ATATGCGGAAGGTCTTTGGT+GGG | 0.667509 | 4.4:-4356082 | None:intergenic |
| GTTTGTATCTGGAATCACAC+TGG | 0.669043 | 4.4:+4358608 | MS.gene20198:CDS |
| ACTATGTTCAGAACTGTAGA+GGG | 0.676507 | 4.4:+4355309 | MS.gene20198:CDS |
| TAGGCGCACAGTCTTATCAA+CGG | 0.676718 | 4.4:-4356309 | None:intergenic |
| ACAATCGCCATACCTTGGTG+TGG | 0.678529 | 4.4:+4358698 | MS.gene20198:CDS |
| TGTCGGCGAACAAACGACGA+CGG | 0.681002 | 4.4:-4355564 | None:intergenic |
| GCAAAGGTTTCACCAATATG+CGG | 0.689476 | 4.4:-4356097 | None:intergenic |
| CAGGAGTTTAAAGCACACAA+AGG | 0.710407 | 4.4:+4355804 | MS.gene20198:CDS |
| GCGCACAGTCTTATCAACGG+AGG | 0.725288 | 4.4:-4356306 | None:intergenic |
| GTTGACTCAATGCCACACCA+AGG | 0.732343 | 4.4:-4358710 | None:intergenic |
| TCTCCGAGTGAAGGAGACAA+CGG | 0.734432 | 4.4:-4358734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAACACAATATTA+GGG | - | chr4.4:4356481-4356500 | None:intergenic | 10.0% |
| !!! | ATTTTGAAATATATATTTGA+TGG | - | chr4.4:4355960-4355979 | None:intergenic | 10.0% |
| !! | AAGAGTTTCATAAAAATATT+GGG | + | chr4.4:4355541-4355560 | MS.gene20198:CDS | 15.0% |
| !! | ATATAAAATTATTGACAAGT+GGG | + | chr4.4:4357644-4357663 | MS.gene20198:intron | 15.0% |
| !! | ATGAAAAAATTATCATTTAC+GGG | - | chr4.4:4356569-4356588 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAACACAATATT+AGG | - | chr4.4:4356482-4356501 | None:intergenic | 15.0% |
| !! | CTAAAATAAATGGTATTAAA+TGG | - | chr4.4:4358090-4358109 | None:intergenic | 15.0% |
| !! | GATGAAAAAATTATCATTTA+CGG | - | chr4.4:4356570-4356589 | None:intergenic | 15.0% |
| !! | TATATAAAATTATTGACAAG+TGG | + | chr4.4:4357643-4357662 | MS.gene20198:intron | 15.0% |
| !! | TTTAGATAATCATATGAAAA+TGG | + | chr4.4:4357500-4357519 | MS.gene20198:intron | 15.0% |
| !!! | ACTTGTCAATAATTTTATAT+AGG | - | chr4.4:4357644-4357663 | None:intergenic | 15.0% |
| !!! | CAAATTTTCAAAACAAAAAA+TGG | + | chr4.4:4357421-4357440 | MS.gene20198:intron | 15.0% |
| !! | AGAATATGTTGTAGATAAAT+TGG | + | chr4.4:4355458-4355477 | MS.gene20198:CDS | 20.0% |
| !! | ATTTATCTTTATCTACATCA+AGG | - | chr4.4:4356010-4356029 | None:intergenic | 20.0% |
| !! | GAAGAGTTTCATAAAAATAT+TGG | + | chr4.4:4355540-4355559 | MS.gene20198:CDS | 20.0% |
| !! | GTACAACAAATGAAAATAAT+GGG | - | chr4.4:4358454-4358473 | None:intergenic | 20.0% |
| !! | TACAACAAATGAAAATAATG+GGG | - | chr4.4:4358453-4358472 | None:intergenic | 20.0% |
| !! | TGTACAACAAATGAAAATAA+TGG | - | chr4.4:4358455-4358474 | None:intergenic | 20.0% |
| !! | TTTATCTTTATCTACATCAA+GGG | - | chr4.4:4356009-4356028 | None:intergenic | 20.0% |
| !!! | AATGATAATTTTTTCATCAG+TGG | + | chr4.4:4356572-4356591 | MS.gene20198:CDS | 20.0% |
| !!! | ATTTGATACCATTTTTGAAT+AGG | + | chr4.4:4358116-4358135 | MS.gene20198:intron | 20.0% |
| !!! | CTTGTTTTTATCATAATCAA+GGG | + | chr4.4:4355676-4355695 | MS.gene20198:CDS | 20.0% |
| !!! | TCGAATGATTTTGATAATAT+TGG | + | chr4.4:4356415-4356434 | MS.gene20198:intron | 20.0% |
| !!! | TTCTAGAATATTCTCATATA+AGG | - | chr4.4:4357814-4357833 | None:intergenic | 20.0% |
| !!! | TTGTACAATTATGTTCATTT+TGG | + | chr4.4:4358468-4358487 | MS.gene20198:intron | 20.0% |
| ! | AAATTTAACTCATTCTTGCA+GGG | + | chr4.4:4356773-4356792 | MS.gene20198:intron | 25.0% |
| ! | ACAACAAATGAAAATAATGG+GGG | - | chr4.4:4358452-4358471 | None:intergenic | 25.0% |
| ! | ATCAAATGAATTGAACATTC+TGG | + | chr4.4:4355926-4355945 | MS.gene20198:CDS | 25.0% |
| ! | ATGATAAAGAATTTGGATGA+TGG | + | chr4.4:4355432-4355451 | MS.gene20198:CDS | 25.0% |
| ! | ATGATTATCTAAACATGTGA+AGG | - | chr4.4:4357493-4357512 | None:intergenic | 25.0% |
| ! | ATGTGTATATGTTCAAACAA+TGG | + | chr4.4:4357339-4357358 | MS.gene20198:intron | 25.0% |
| ! | ATTAGGGTGAGAAAAATATA+GGG | - | chr4.4:4356465-4356484 | None:intergenic | 25.0% |
| ! | CAATATGTAAATCAGAGTAT+AGG | + | chr4.4:4358900-4358919 | MS.gene20198:CDS | 25.0% |
| ! | CTCTACAAAATCAACTTATA+AGG | + | chr4.4:4358149-4358168 | MS.gene20198:intron | 25.0% |
| ! | GACATGTATGATAAAGAATT+TGG | + | chr4.4:4355425-4355444 | MS.gene20198:CDS | 25.0% |
| ! | TAATAAACTGCAGAAAAAGT+TGG | - | chr4.4:4357607-4357626 | None:intergenic | 25.0% |
| ! | TACCTAGGATATTATAGAAA+CGG | - | chr4.4:4356829-4356848 | None:intergenic | 25.0% |
| ! | TACTCTGATTTACATATTGT+AGG | - | chr4.4:4358899-4358918 | None:intergenic | 25.0% |
| ! | TATTAGGGTGAGAAAAATAT+AGG | - | chr4.4:4356466-4356485 | None:intergenic | 25.0% |
| ! | TTATCTTTATCTACATCAAG+GGG | - | chr4.4:4356008-4356027 | None:intergenic | 25.0% |
| ! | TTCAAAATGAATCAGTTTAC+TGG | + | chr4.4:4355972-4355991 | MS.gene20198:CDS | 25.0% |
| !! | AGACATAATTTTCTTTGCTT+TGG | - | chr4.4:4358651-4358670 | None:intergenic | 25.0% |
| !! | ATAAGAGTGTACCAAAATTA+CGG | + | chr4.4:4359004-4359023 | MS.gene20198:CDS | 25.0% |
| !! | CAGGAATTTAAAATACACAT+TGG | - | chr4.4:4358363-4358382 | None:intergenic | 25.0% |
| !! | GTTTTCTCTCACAATAATTA+TGG | + | chr4.4:4356362-4356381 | MS.gene20198:CDS | 25.0% |
| !! | TAGTCTTGATGGAAAATATT+TGG | + | chr4.4:4355848-4355867 | MS.gene20198:CDS | 25.0% |
| !!! | GCTTGTTTTTATCATAATCA+AGG | + | chr4.4:4355675-4355694 | MS.gene20198:CDS | 25.0% |
| !!! | TATTTTAAATTCCTGCAATG+AGG | + | chr4.4:4358368-4358387 | MS.gene20198:intron | 25.0% |
| !!! | TGGATCACTGTTTTTTATTT+TGG | + | chr4.4:4357359-4357378 | MS.gene20198:intron | 25.0% |
| AAAAGAAGATGAAGAAAGGT+TGG | + | chr4.4:4355631-4355650 | MS.gene20198:CDS | 30.0% | |
| AAGCTATCATGAAGAGTTTA+TGG | + | chr4.4:4357062-4357081 | MS.gene20198:intron | 30.0% | |
| AAGGTTCAAATGTTTGTATC+TGG | + | chr4.4:4358597-4358616 | MS.gene20198:CDS | 30.0% | |
| AATCACATGTGAAACTGTTT+GGG | - | chr4.4:4357141-4357160 | None:intergenic | 30.0% | |
| AATGTCTAATTCTCACTTGT+GGG | + | chr4.4:4358946-4358965 | MS.gene20198:CDS | 30.0% | |
| ATAGGGAAATACAGTTATTG+TGG | - | chr4.4:4356448-4356467 | None:intergenic | 30.0% | |
| CTGCTAAATAACACTTTGTT+CGG | + | chr4.4:4356506-4356525 | MS.gene20198:intron | 30.0% | |
| GAAATTTAACTCATTCTTGC+AGG | + | chr4.4:4356772-4356791 | MS.gene20198:intron | 30.0% | |
| GATGTCATCTACAAATTCAA+GGG | + | chr4.4:4357767-4357786 | MS.gene20198:CDS | 30.0% | |
| GCAAGAATGAGTTAAATTTC+AGG | - | chr4.4:4356772-4356791 | None:intergenic | 30.0% | |
| GCATCTTATAATTTGAGCTT+AGG | + | chr4.4:4357867-4357886 | MS.gene20198:intron | 30.0% | |
| GCTAAAAAGAAGATGAAGAA+AGG | + | chr4.4:4355627-4355646 | MS.gene20198:CDS | 30.0% | |
| GTTTAACTGTAAGAACATTG+TGG | + | chr4.4:4356720-4356739 | MS.gene20198:intron | 30.0% | |
| TAATCACATGTGAAACTGTT+TGG | - | chr4.4:4357142-4357161 | None:intergenic | 30.0% | |
| TAGGGAAATACAGTTATTGT+GGG | - | chr4.4:4356447-4356466 | None:intergenic | 30.0% | |
| TAGTTAAAACAGAGAAGTTG+AGG | + | chr4.4:4356030-4356049 | MS.gene20198:CDS | 30.0% | |
| TCCTCAAAGCACAAAAAAAA+GGG | - | chr4.4:4358422-4358441 | None:intergenic | 30.0% | |
| TCCTTAATTGAGGCAAATTT+GGG | - | chr4.4:4358297-4358316 | None:intergenic | 30.0% | |
| TGTTGTAGATAAATTGGATC+AGG | + | chr4.4:4355464-4355483 | MS.gene20198:CDS | 30.0% | |
| TTAAGCTGTTTATCCAAACA+AGG | - | chr4.4:4356927-4356946 | None:intergenic | 30.0% | |
| TTATATAGGAAGAGAGAGAA+AGG | - | chr4.4:4357630-4357649 | None:intergenic | 30.0% | |
| TTCCTTAATTGAGGCAAATT+TGG | - | chr4.4:4358298-4358317 | None:intergenic | 30.0% | |
| TTCGACACACTTAAAAATCA+AGG | - | chr4.4:4356400-4356419 | None:intergenic | 30.0% | |
| TTGTTAGAAAATCACGATGA+TGG | + | chr4.4:4355390-4355409 | MS.gene20198:CDS | 30.0% | |
| TTTGCAATGCTTATAAAGCT+TGG | - | chr4.4:4358184-4358203 | None:intergenic | 30.0% | |
| ! | AAGCTTTATAAGCATTGCAA+AGG | + | chr4.4:4358183-4358202 | MS.gene20198:intron | 30.0% |
| !!! | TATTATATGCCTGTTTTGAC+TGG | - | chr4.4:4357189-4357208 | None:intergenic | 30.0% |
| AAACCTTTGCATGAATTCCA+GGG | + | chr4.4:4356110-4356129 | MS.gene20198:CDS | 35.0% | |
| AAGCAACCAATAATTTGGTC+GGG | - | chr4.4:4357712-4357731 | None:intergenic | 35.0% | |
| ACAAGGCAAAAAGAAGACAT+CGG | + | chr4.4:4357539-4357558 | MS.gene20198:CDS | 35.0% | |
| ACATGATATTGGACATGCAT+GGG | + | chr4.4:4358391-4358410 | MS.gene20198:intron | 35.0% | |
| ACTATGTTCAGAACTGTAGA+GGG | + | chr4.4:4355309-4355328 | MS.gene20198:CDS | 35.0% | |
| ACTCTTCGAAACTAATCAAC+TGG | - | chr4.4:4355527-4355546 | None:intergenic | 35.0% | |
| AGCTAAATGTGTGTTTACCT+AGG | - | chr4.4:4356844-4356863 | None:intergenic | 35.0% | |
| AGTGCTTATATCTTGCAAAC+CGG | - | chr4.4:4357913-4357932 | None:intergenic | 35.0% | |
| AGTGGAATATAGACCTTGTT+TGG | + | chr4.4:4356911-4356930 | MS.gene20198:intron | 35.0% | |
| ATAAGGAATCCAACACAATC+TGG | - | chr4.4:4355353-4355372 | None:intergenic | 35.0% | |
| ATATTCCACTCATTGTATGC+AGG | - | chr4.4:4356901-4356920 | None:intergenic | 35.0% | |
| ATCCTGCTGTTACAATTACT+TGG | - | chr4.4:4358973-4358992 | None:intergenic | 35.0% | |
| ATGTCTAATTCTCACTTGTG+GGG | + | chr4.4:4358947-4358966 | MS.gene20198:CDS | 35.0% | |
| CAAAATCAACTTATAAGGCG+AGG | + | chr4.4:4358154-4358173 | MS.gene20198:intron | 35.0% | |
| CATATCGTTTCACTTAGTGA+AGG | + | chr4.4:4358578-4358597 | MS.gene20198:CDS | 35.0% | |
| CGATGTCATCTACAAATTCA+AGG | + | chr4.4:4357766-4357785 | MS.gene20198:CDS | 35.0% | |
| CTTCACTGTGTTGAATGTAA+GGG | - | chr4.4:4358243-4358262 | None:intergenic | 35.0% | |
| GAAGCAACCAATAATTTGGT+CGG | - | chr4.4:4357713-4357732 | None:intergenic | 35.0% | |
| GAATGTCTAATTCTCACTTG+TGG | + | chr4.4:4358945-4358964 | MS.gene20198:CDS | 35.0% | |
| GAGTCAGACCTATTCAAAAA+TGG | - | chr4.4:4358127-4358146 | None:intergenic | 35.0% | |
| GATGGAAAATATTTGGCTAG+TGG | + | chr4.4:4355855-4355874 | MS.gene20198:CDS | 35.0% | |
| GCAACAAAGACTTTGATTCT+AGG | + | chr4.4:4355715-4355734 | MS.gene20198:CDS | 35.0% | |
| GCAAGATATAAGCACTACAA+AGG | + | chr4.4:4357917-4357936 | MS.gene20198:intron | 35.0% | |
| GTAGATAAATTGGATCAGGA+GGG | + | chr4.4:4355468-4355487 | MS.gene20198:CDS | 35.0% | |
| GTCCTCAAAGCACAAAAAAA+AGG | - | chr4.4:4358423-4358442 | None:intergenic | 35.0% | |
| TAATTTGAGCATATAGTGCG+AGG | + | chr4.4:4357268-4357287 | MS.gene20198:intron | 35.0% | |
| TACATAAGCACGCATATGAT+AGG | - | chr4.4:4356972-4356991 | None:intergenic | 35.0% | |
| TCCCAAATTTGCCTCAATTA+AGG | + | chr4.4:4358293-4358312 | MS.gene20198:intron | 35.0% | |
| TCTTCACTGTGTTGAATGTA+AGG | - | chr4.4:4358244-4358263 | None:intergenic | 35.0% | |
| TGTAGATAAATTGGATCAGG+AGG | + | chr4.4:4355467-4355486 | MS.gene20198:CDS | 35.0% | |
| TTCATCAGTGGTTCAATTGA+TGG | + | chr4.4:4356584-4356603 | MS.gene20198:CDS | 35.0% | |
| ! | AGAAAATCACGATGATGGTA+CGG | + | chr4.4:4355395-4355414 | MS.gene20198:CDS | 35.0% |
| ! | ATGACATTTTAGACCTTGCA+TGG | + | chr4.4:4356141-4356160 | MS.gene20198:CDS | 35.0% |
| ! | GAAAGGTTGGTTAAGCAAAT+TGG | + | chr4.4:4355644-4355663 | MS.gene20198:CDS | 35.0% |
| ! | GATGCTGAATTTTCGTTACA+AGG | + | chr4.4:4357522-4357541 | MS.gene20198:CDS | 35.0% |
| ! | TCTAGCACCTTCATTGTTTT+GGG | - | chr4.4:4357984-4358003 | None:intergenic | 35.0% |
| ! | TGCCGTTTCTATAATATCCT+AGG | + | chr4.4:4356824-4356843 | MS.gene20198:CDS | 35.0% |
| !! | ACGATGAAGTTTAGTCTTGA+TGG | + | chr4.4:4355837-4355856 | MS.gene20198:CDS | 35.0% |
| !! | CAAATAAGAGTAGCTTGCTT+CGG | - | chr4.4:4356191-4356210 | None:intergenic | 35.0% |
| !! | CATTTAGCTCTGTAGATGTT+TGG | + | chr4.4:4356855-4356874 | MS.gene20198:intron | 35.0% |
| !!! | CTTCATTGTTTTGGGTGTAT+GGG | - | chr4.4:4357976-4357995 | None:intergenic | 35.0% |
| !!! | TCCCTTTTTTTTGTGCTTTG+AGG | + | chr4.4:4358418-4358437 | MS.gene20198:intron | 35.0% |
| !!! | TTCATTGTTTTGGGTGTATG+GGG | - | chr4.4:4357975-4357994 | None:intergenic | 35.0% |
| AAAAGAAGACATCGGGGAAA+AGG | + | chr4.4:4357547-4357566 | MS.gene20198:CDS | 40.0% | |
| AACCTCAAACCAGATTGTGT+TGG | + | chr4.4:4355341-4355360 | MS.gene20198:CDS | 40.0% | |
| AACCTTTGCATGAATTCCAG+GGG | + | chr4.4:4356111-4356130 | MS.gene20198:CDS | 40.0% | |
| AACTGTAAGAACATTGTGGC+AGG | + | chr4.4:4356724-4356743 | MS.gene20198:intron | 40.0% | |
| AAGAAGAATTAGGCACAGGT+GGG | - | chr4.4:4357842-4357861 | None:intergenic | 40.0% | |
| AAGGCAAAAAGAAGACATCG+GGG | + | chr4.4:4357541-4357560 | MS.gene20198:CDS | 40.0% | |
| AATAATTTGGTCGGGTCACT+GGG | - | chr4.4:4357704-4357723 | None:intergenic | 40.0% | |
| AATGGTATCTAAGCAATCCC+TGG | - | chr4.4:4358072-4358091 | None:intergenic | 40.0% | |
| ACAGAAGAAGAATTAGGCAC+AGG | - | chr4.4:4357846-4357865 | None:intergenic | 40.0% | |
| ACCTTGCATGGTCTAAATCA+GGG | + | chr4.4:4356153-4356172 | MS.gene20198:CDS | 40.0% | |
| ATTCAACACAGTGAAGATGC+TGG | + | chr4.4:4358247-4358266 | MS.gene20198:intron | 40.0% | |
| ATTGTAACAGCAGGATCTGA+TGG | + | chr4.4:4358977-4358996 | MS.gene20198:CDS | 40.0% | |
| CAAGGCAAAAAGAAGACATC+GGG | + | chr4.4:4357540-4357559 | MS.gene20198:CDS | 40.0% | |
| CAATATCATGTCCTCATTGC+AGG | - | chr4.4:4358382-4358401 | None:intergenic | 40.0% | |
| CACACATGTTACTGCATCAA+AGG | - | chr4.4:4356537-4356556 | None:intergenic | 40.0% | |
| CAGTGGTTCAATTGATGGAA+AGG | + | chr4.4:4356589-4356608 | MS.gene20198:CDS | 40.0% | |
| CCATACACCCAAAACAATGA+AGG | + | chr4.4:4357974-4357993 | MS.gene20198:intron | 40.0% | |
| CCTAAAAGCCTCGTTTGATA+AGG | - | chr4.4:4355370-4355389 | None:intergenic | 40.0% | |
| CCTGAAGGCAAAAAAAGAAG+AGG | - | chr4.4:4358509-4358528 | None:intergenic | 40.0% | |
| CGACTCATGAAGAAACAATC+AGG | - | chr4.4:4358791-4358810 | None:intergenic | 40.0% | |
| CTAGTTTAACCCGTTAAAGC+CGG | + | chr4.4:4357891-4357910 | MS.gene20198:intron | 40.0% | |
| CTGCAATGAGGACATGATAT+TGG | + | chr4.4:4358380-4358399 | MS.gene20198:intron | 40.0% | |
| GAAACCTTTGCATGAATTCC+AGG | + | chr4.4:4356109-4356128 | MS.gene20198:CDS | 40.0% | |
| GACATGATATTGGACATGCA+TGG | + | chr4.4:4358390-4358409 | MS.gene20198:intron | 40.0% | |
| GACTATGTTCAGAACTGTAG+AGG | + | chr4.4:4355308-4355327 | MS.gene20198:CDS | 40.0% | |
| GAGTATGCAGACATGTGAAT+CGG | - | chr4.4:4357738-4357757 | None:intergenic | 40.0% | |
| GATGCCACAGAAGAAGAATT+AGG | - | chr4.4:4357852-4357871 | None:intergenic | 40.0% | |
| GCAAAGGTTTCACCAATATG+CGG | - | chr4.4:4356100-4356119 | None:intergenic | 40.0% | |
| GGAAAATATTTGGCTAGTGG+TGG | + | chr4.4:4355858-4355877 | MS.gene20198:CDS | 40.0% | |
| GGCAGAAGCAACCAATAATT+TGG | - | chr4.4:4357717-4357736 | None:intergenic | 40.0% | |
| GTCGTATCTCTAAGTGATGT+GGG | + | chr4.4:4358205-4358224 | MS.gene20198:intron | 40.0% | |
| GTGTAGTGTGTGTGTTAGAA+AGG | - | chr4.4:4357306-4357325 | None:intergenic | 40.0% | |
| GTTGGATTCCTTATCAAACG+AGG | + | chr4.4:4355359-4355378 | MS.gene20198:CDS | 40.0% | |
| TATGGCGATTGTTGCATTGT+GGG | - | chr4.4:4358690-4358709 | None:intergenic | 40.0% | |
| TCCTTAACTCGCTTCTTATG+CGG | - | chr4.4:4355762-4355781 | None:intergenic | 40.0% | |
| TGAACATAGTCCGGCTTATT+CGG | - | chr4.4:4355299-4355318 | None:intergenic | 40.0% | |
| TGCAGTAGCTTCCTTAATTG+AGG | - | chr4.4:4358307-4358326 | None:intergenic | 40.0% | |
| TGTGCCTAATTCTTCTTCTG+TGG | + | chr4.4:4357845-4357864 | MS.gene20198:intron | 40.0% | |
| TGTGTTGAATGTAAGGGAGT+GGG | - | chr4.4:4358237-4358256 | None:intergenic | 40.0% | |
| TTCGTCTCTTTACACTGAAC+AGG | + | chr4.4:4355785-4355804 | MS.gene20198:CDS | 40.0% | |
| TTGGAACACATCAGATATGC+AGG | - | chr4.4:4358344-4358363 | None:intergenic | 40.0% | |
| ! | ACAATCTGGTTTGAGGTTGA+CGG | - | chr4.4:4355339-4355358 | None:intergenic | 40.0% |
| ! | ATCCAACACAATCTGGTTTG+AGG | - | chr4.4:4355346-4355365 | None:intergenic | 40.0% |
| ! | ATCTTGCAAACCGGCTTTAA+CGG | - | chr4.4:4357904-4357923 | None:intergenic | 40.0% |
| ! | CAGGAGTTTAAAGCACACAA+AGG | + | chr4.4:4355804-4355823 | MS.gene20198:CDS | 40.0% |
| ! | CCTTATCAAACGAGGCTTTT+AGG | + | chr4.4:4355367-4355386 | MS.gene20198:CDS | 40.0% |
| ! | CTCTAGCACCTTCATTGTTT+TGG | - | chr4.4:4357985-4358004 | None:intergenic | 40.0% |
| ! | GAATCAGTTTACTGGTTGTG+TGG | + | chr4.4:4355980-4355999 | MS.gene20198:CDS | 40.0% |
| ! | GATTGTTTCTTCATGAGTCG+TGG | + | chr4.4:4358791-4358810 | MS.gene20198:CDS | 40.0% |
| ! | GTTTGTATCTGGAATCACAC+TGG | + | chr4.4:4358608-4358627 | MS.gene20198:CDS | 40.0% |
| ! | TATGACGGGAATTCAGTAGA+GGG | + | chr4.4:4355237-4355256 | MS.gene20198:CDS | 40.0% |
| ! | TCGGAGAAGAGTTGATTCAA+AGG | + | chr4.4:4358750-4358769 | MS.gene20198:CDS | 40.0% |
| !! | AGAAACCTTTGGGACTAACT+CGG | - | chr4.4:4358825-4358844 | None:intergenic | 40.0% |
| !! | CAAAACAATGAAGGTGCTAG+AGG | + | chr4.4:4357983-4358002 | MS.gene20198:intron | 40.0% |
| !! | CTACAGTTCTGAACATAGTC+CGG | - | chr4.4:4355308-4355327 | None:intergenic | 40.0% |
| !! | CTTTGGAAGTATTCCTATCC+TGG | - | chr4.4:4358634-4358653 | None:intergenic | 40.0% |
| !! | TTCTTGAGAAGTGCTTGCAA+GGG | + | chr4.4:4358923-4358942 | MS.gene20198:CDS | 40.0% |
| !!! | CCTCTTCTTTTTTTGCCTTC+AGG | + | chr4.4:4358506-4358525 | MS.gene20198:intron | 40.0% |
| !!! | CCTTCATTGTTTTGGGTGTA+TGG | - | chr4.4:4357977-4357996 | None:intergenic | 40.0% |
| !!! | CTGTTTTGACTGGCTTACAT+GGG | - | chr4.4:4357179-4357198 | None:intergenic | 40.0% |
| !!! | TCATTGTTTTGGGTGTATGG+GGG | - | chr4.4:4357974-4357993 | None:intergenic | 40.0% |
| AAATGTCATCACTATGCCCC+TGG | - | chr4.4:4356130-4356149 | None:intergenic | 45.0% | |
| AACGATATGTTTCCCGTCAG+AGG | - | chr4.4:4358567-4358586 | None:intergenic | 45.0% | |
| AATATGCGGAAGGTCTTTGG+TGG | - | chr4.4:4356086-4356105 | None:intergenic | 45.0% | |
| ACACACACTACACAACTGAG+TGG | + | chr4.4:4357313-4357332 | MS.gene20198:intron | 45.0% | |
| ACCAAAGACCTTCCGCATAT+TGG | + | chr4.4:4356085-4356104 | MS.gene20198:CDS | 45.0% | |
| ACCAATATGCGGAAGGTCTT+TGG | - | chr4.4:4356089-4356108 | None:intergenic | 45.0% | |
| ACGAAACAGACCTGTCCATT+AGG | - | chr4.4:4356695-4356714 | None:intergenic | 45.0% | |
| AGGTTTCACCAATATGCGGA+AGG | - | chr4.4:4356096-4356115 | None:intergenic | 45.0% | |
| ATATGCGGAAGGTCTTTGGT+GGG | - | chr4.4:4356085-4356104 | None:intergenic | 45.0% | |
| ATCAACTCTTCTCCGAGTGA+AGG | - | chr4.4:4358746-4358765 | None:intergenic | 45.0% | |
| ATGCAACAATCGCCATACCT+TGG | + | chr4.4:4358693-4358712 | MS.gene20198:CDS | 45.0% | |
| CAATAATTTGGTCGGGTCAC+TGG | - | chr4.4:4357705-4357724 | None:intergenic | 45.0% | |
| CAGCATCTCTCTGCAAATGT+CGG | - | chr4.4:4355584-4355603 | None:intergenic | 45.0% | |
| CAGTGACCCGACCAAATTAT+TGG | + | chr4.4:4357703-4357722 | MS.gene20198:CDS | 45.0% | |
| CCATGTAAGCCAGTCAAAAC+AGG | + | chr4.4:4357177-4357196 | MS.gene20198:intron | 45.0% | |
| CCTTGCATGGTCTAAATCAG+GGG | + | chr4.4:4356154-4356173 | MS.gene20198:CDS | 45.0% | |
| CGAATTTGCCGCAATTACAG+CGG | + | chr4.4:4358023-4358042 | MS.gene20198:intron | 45.0% | |
| CGCTGTAATTGCGGCAAATT+CGG | - | chr4.4:4358025-4358044 | None:intergenic | 45.0% | |
| CTGTGTTGAATGTAAGGGAG+TGG | - | chr4.4:4358238-4358257 | None:intergenic | 45.0% | |
| GAAGAAGAATTAGGCACAGG+TGG | - | chr4.4:4357843-4357862 | None:intergenic | 45.0% | |
| GACCTTGCATGGTCTAAATC+AGG | + | chr4.4:4356152-4356171 | MS.gene20198:CDS | 45.0% | |
| GCACTACAAAGGTCATGTCT+AGG | + | chr4.4:4357928-4357947 | MS.gene20198:intron | 45.0% | |
| GCCATGTTGCAGAAACCTTT+GGG | - | chr4.4:4358835-4358854 | None:intergenic | 45.0% | |
| GCTGTAATTGCGGCAAATTC+GGG | - | chr4.4:4358024-4358043 | None:intergenic | 45.0% | |
| GGCCAAGTAATTGTAACAGC+AGG | + | chr4.4:4358968-4358987 | MS.gene20198:CDS | 45.0% | |
| GGTCGTATCTCTAAGTGATG+TGG | + | chr4.4:4358204-4358223 | MS.gene20198:intron | 45.0% | |
| GTATGGCGATTGTTGCATTG+TGG | - | chr4.4:4358691-4358710 | None:intergenic | 45.0% | |
| TAGTCACAGCTGTATGCTTC+TGG | + | chr4.4:4356669-4356688 | MS.gene20198:CDS | 45.0% | |
| TCACATGTCTGCATACTCTC+TGG | + | chr4.4:4357740-4357759 | MS.gene20198:CDS | 45.0% | |
| TCAGTAGAGGGAGATGAGTT+TGG | + | chr4.4:4355249-4355268 | MS.gene20198:CDS | 45.0% | |
| TCCCAAAGGTTTCTGCAACA+TGG | + | chr4.4:4358831-4358850 | MS.gene20198:CDS | 45.0% | |
| TCCGCATAAGAAGCGAGTTA+AGG | + | chr4.4:4355758-4355777 | MS.gene20198:CDS | 45.0% | |
| TCTTTCCGAGTTAGTCCCAA+AGG | + | chr4.4:4358817-4358836 | MS.gene20198:CDS | 45.0% | |
| TGAAGCCTGCATACAATGAG+TGG | + | chr4.4:4356893-4356912 | MS.gene20198:intron | 45.0% | |
| TGCTAATCCCTACTTGCCAT+AGG | - | chr4.4:4356331-4356350 | None:intergenic | 45.0% | |
| TTGATAAGACTGTGCGCCTA+TGG | + | chr4.4:4356312-4356331 | MS.gene20198:CDS | 45.0% | |
| TTTGGAGATGATCCATCTCG+TGG | + | chr4.4:4355267-4355286 | MS.gene20198:CDS | 45.0% | |
| ! | AGGAAGCTACTGCAGTTTTG+CGG | + | chr4.4:4358313-4358332 | MS.gene20198:intron | 45.0% |
| ! | GAACGGGTAAGCCGTAATTT+TGG | - | chr4.4:4359018-4359037 | None:intergenic | 45.0% |
| ! | GTATGACGGGAATTCAGTAG+AGG | + | chr4.4:4355236-4355255 | MS.gene20198:CDS | 45.0% |
| ! | TAGGCGCACAGTCTTATCAA+CGG | - | chr4.4:4356312-4356331 | None:intergenic | 45.0% |
| ! | TCTTGCAAACCGGCTTTAAC+GGG | - | chr4.4:4357903-4357922 | None:intergenic | 45.0% |
| !! | CGGCTTTAACGGGTTAAACT+AGG | - | chr4.4:4357893-4357912 | None:intergenic | 45.0% |
| !! | GAAAAGGATCACTGGCTTTC+AGG | + | chr4.4:4357563-4357582 | MS.gene20198:CDS | 45.0% |
| !! | GTTCTTGAGAAGTGCTTGCA+AGG | + | chr4.4:4358922-4358941 | MS.gene20198:CDS | 45.0% |
| !!! | CATTGTTTTGGGTGTATGGG+GGG | - | chr4.4:4357973-4357992 | None:intergenic | 45.0% |
| !!! | CCTGTTTTGACTGGCTTACA+TGG | - | chr4.4:4357180-4357199 | None:intergenic | 45.0% |
| !!! | AAATTATATTCTAAAATAAA+TGG | - | chr4.4:4358100-4358119 | None:intergenic | 5.0% |
| AAGACGGCATTGTTCGTGTG+TGG | + | chr4.4:4355883-4355902 | MS.gene20198:CDS | 50.0% | |
| AAGGTCATGTCTAGGCGATG+TGG | + | chr4.4:4357936-4357955 | MS.gene20198:intron | 50.0% | |
| ACAATCGCCATACCTTGGTG+TGG | + | chr4.4:4358698-4358717 | MS.gene20198:CDS | 50.0% | |
| ACAATCGTGGGTACCATGAC+GGG | + | chr4.4:4356797-4356816 | MS.gene20198:CDS | 50.0% | |
| ACATCGGGGAAAAGGATCAC+TGG | + | chr4.4:4357555-4357574 | MS.gene20198:CDS | 50.0% | |
| ACTCCTAGCCGCTGTAATTG+CGG | - | chr4.4:4358034-4358053 | None:intergenic | 50.0% | |
| ACTTGATACTCTGCGCGTTC+TGG | + | chr4.4:4355494-4355513 | MS.gene20198:CDS | 50.0% | |
| AGAGGAGACGCTTCTTGACT+CGG | + | chr4.4:4358856-4358875 | MS.gene20198:CDS | 50.0% | |
| AGGTCATGTCTAGGCGATGT+GGG | + | chr4.4:4357937-4357956 | MS.gene20198:intron | 50.0% | |
| AGTGGTCAGCAATCAAGTCC+AGG | + | chr4.4:4358051-4358070 | MS.gene20198:intron | 50.0% | |
| ATGCTTCCTTCACCTCTGAC+GGG | + | chr4.4:4358552-4358571 | MS.gene20198:CDS | 50.0% | |
| ATGTTTCCCGTCAGAGGTGA+AGG | - | chr4.4:4358561-4358580 | None:intergenic | 50.0% | |
| ATTCGGTCAACTCCACGAGA+TGG | - | chr4.4:4355282-4355301 | None:intergenic | 50.0% | |
| ATTCTTGCAGGGCACAATCG+TGG | + | chr4.4:4356784-4356803 | MS.gene20198:intron | 50.0% | |
| CAACACAGTGAAGATGCTGG+AGG | + | chr4.4:4358250-4358269 | MS.gene20198:intron | 50.0% | |
| CACAATCGTGGGTACCATGA+CGG | + | chr4.4:4356796-4356815 | MS.gene20198:CDS | 50.0% | |
| CATGCTTCCTTCACCTCTGA+CGG | + | chr4.4:4358551-4358570 | MS.gene20198:CDS | 50.0% | |
| CCCCTGATTTAGACCATGCA+AGG | - | chr4.4:4356157-4356176 | None:intergenic | 50.0% | |
| CTCAATGCCACACCAAGGTA+TGG | - | chr4.4:4358708-4358727 | None:intergenic | 50.0% | |
| CTTGATACTCTGCGCGTTCT+GGG | + | chr4.4:4355495-4355514 | MS.gene20198:CDS | 50.0% | |
| GCTGTATGCTTCTGGCCTAA+TGG | + | chr4.4:4356677-4356696 | MS.gene20198:CDS | 50.0% | |
| GGCCATGTTGCAGAAACCTT+TGG | - | chr4.4:4358836-4358855 | None:intergenic | 50.0% | |
| GTGGAGTTGACCGAATAAGC+CGG | + | chr4.4:4355286-4355305 | MS.gene20198:CDS | 50.0% | |
| GTGGTCAGCAATCAAGTCCA+GGG | + | chr4.4:4358052-4358071 | MS.gene20198:intron | 50.0% | |
| TCTCCGAGTGAAGGAGACAA+CGG | - | chr4.4:4358737-4358756 | None:intergenic | 50.0% | |
| TGCCCCTGGAATTCATGCAA+AGG | - | chr4.4:4356116-4356135 | None:intergenic | 50.0% | |
| TTCTTGCAGGGCACAATCGT+GGG | + | chr4.4:4356785-4356804 | MS.gene20198:intron | 50.0% | |
| ! | ATGCTTCTGGCCTAATGGAC+AGG | + | chr4.4:4356682-4356701 | MS.gene20198:CDS | 50.0% |
| ! | GTTGACTCAATGCCACACCA+AGG | - | chr4.4:4358713-4358732 | None:intergenic | 50.0% |
| ! | TATCTGGAATCACACTGGCC+AGG | + | chr4.4:4358613-4358632 | MS.gene20198:CDS | 50.0% |
| ! | TGATGGAAAGGTGCGCATCT+GGG | + | chr4.4:4356601-4356620 | MS.gene20198:CDS | 50.0% |
| ! | TTGATGGAAAGGTGCGCATC+TGG | + | chr4.4:4356600-4356619 | MS.gene20198:CDS | 50.0% |
| ! | TTGGCTAGTGGTGGTGAAGA+CGG | + | chr4.4:4355867-4355886 | MS.gene20198:CDS | 50.0% |
| !! | AGGATCACTGGCTTTCAGGT+TGG | + | chr4.4:4357567-4357586 | MS.gene20198:intron | 50.0% |
| ACGCCGTTGTCTCCTTCACT+CGG | + | chr4.4:4358731-4358750 | MS.gene20198:CDS | 55.0% | |
| ACTGTGCGCCTATGGCAAGT+AGG | + | chr4.4:4356320-4356339 | MS.gene20198:CDS | 55.0% | |
| CATTGTTCGTGTGTGGCAGG+TGG | + | chr4.4:4355890-4355909 | MS.gene20198:CDS | 55.0% | |
| CCTGCACTTCTCAGACCTGA+AGG | - | chr4.4:4358524-4358543 | None:intergenic | 55.0% | |
| CTGTGCGCCTATGGCAAGTA+GGG | + | chr4.4:4356321-4356340 | MS.gene20198:CDS | 55.0% | |
| GAAACGGCAATTGCCCGTCA+TGG | - | chr4.4:4356813-4356832 | None:intergenic | 55.0% | |
| GAGGAGACGCTTCTTGACTC+GGG | + | chr4.4:4358857-4358876 | MS.gene20198:CDS | 55.0% | |
| GCAATTACAGCGGCTAGGAG+TGG | + | chr4.4:4358033-4358052 | MS.gene20198:intron | 55.0% | |
| GGAATCACACTGGCCAGGAT+AGG | + | chr4.4:4358618-4358637 | MS.gene20198:CDS | 55.0% | |
| GGTTTCTGCAACATGGCCAG+AGG | + | chr4.4:4358838-4358857 | MS.gene20198:CDS | 55.0% | |
| TGTCGGCGAACAAACGACGA+CGG | - | chr4.4:4355567-4355586 | None:intergenic | 55.0% | |
| TTGCCGCAATTACAGCGGCT+AGG | + | chr4.4:4358028-4358047 | MS.gene20198:intron | 55.0% | |
| ! | CCTTCAGGTCTGAGAAGTGC+AGG | + | chr4.4:4358521-4358540 | MS.gene20198:intron | 55.0% |
| ! | GCGCACAGTCTTATCAACGG+AGG | - | chr4.4:4356309-4356328 | None:intergenic | 55.0% |
| !! | GAGTCAAGAAGCGTCTCCTC+TGG | - | chr4.4:4358857-4358876 | None:intergenic | 55.0% |
| !! | TGTTTTGGGTGTATGGGGGG+TGG | - | chr4.4:4357970-4357989 | None:intergenic | 55.0% |
| CGGCATTGTTCGTGTGTGGC+AGG | + | chr4.4:4355887-4355906 | MS.gene20198:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4355225 | 4359045 | 4355225 | ID=MS.gene20198 |
| chr4.4 | mRNA | 4355225 | 4359045 | 4355225 | ID=MS.gene20198.t1;Parent=MS.gene20198 |
| chr4.4 | exon | 4355225 | 4356175 | 4355225 | ID=MS.gene20198.t1.exon1;Parent=MS.gene20198.t1 |
| chr4.4 | CDS | 4355225 | 4356175 | 4355225 | ID=cds.MS.gene20198.t1;Parent=MS.gene20198.t1 |
| chr4.4 | exon | 4356293 | 4356383 | 4356293 | ID=MS.gene20198.t1.exon2;Parent=MS.gene20198.t1 |
| chr4.4 | CDS | 4356293 | 4356383 | 4356293 | ID=cds.MS.gene20198.t1;Parent=MS.gene20198.t1 |
| chr4.4 | exon | 4356546 | 4356703 | 4356546 | ID=MS.gene20198.t1.exon3;Parent=MS.gene20198.t1 |
| chr4.4 | CDS | 4356546 | 4356703 | 4356546 | ID=cds.MS.gene20198.t1;Parent=MS.gene20198.t1 |
| chr4.4 | exon | 4356794 | 4356845 | 4356794 | ID=MS.gene20198.t1.exon4;Parent=MS.gene20198.t1 |
| chr4.4 | CDS | 4356794 | 4356845 | 4356794 | ID=cds.MS.gene20198.t1;Parent=MS.gene20198.t1 |
| chr4.4 | exon | 4357505 | 4357584 | 4357505 | ID=MS.gene20198.t1.exon5;Parent=MS.gene20198.t1 |
| chr4.4 | CDS | 4357505 | 4357584 | 4357505 | ID=cds.MS.gene20198.t1;Parent=MS.gene20198.t1 |
| chr4.4 | exon | 4357695 | 4357788 | 4357695 | ID=MS.gene20198.t1.exon6;Parent=MS.gene20198.t1 |
| chr4.4 | CDS | 4357695 | 4357788 | 4357695 | ID=cds.MS.gene20198.t1;Parent=MS.gene20198.t1 |
| chr4.4 | exon | 4358528 | 4359045 | 4358528 | ID=MS.gene20198.t1.exon7;Parent=MS.gene20198.t1 |
| chr4.4 | CDS | 4358528 | 4359045 | 4358528 | ID=cds.MS.gene20198.t1;Parent=MS.gene20198.t1 |
| Gene Sequence |
| Protein sequence |
