AlfalfaGEDB | MS.gene20954

M. sativa cultivar XinJiangDaYe / MS.gene20954

KEGG: K01885
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005488 GO:0005524 GO:0005575 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0110165 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00749.24 PF03950.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20954.t1	XP_003591273.1	96.9	735	23	0	1	735	1	735	0.00E+00	1440.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20954.t1	O82462	73.2	723	181	5	8	729	6	716	0.0e+00	1092.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20954.t1	G7IAE3	96.9	735	23	0	1	735	1	735	0.0e+00	1440.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003428	MS.gene20954	PPI
MS.gene00612	MS.gene20954	PPI
MS.gene034567	MS.gene20954	PPI
MS.gene034568	MS.gene20954	PPI
MS.gene042890	MS.gene20954	PPI
MS.gene052373	MS.gene20954	PPI
MS.gene058013	MS.gene20954	PPI
MS.gene064140	MS.gene20954	PPI
MS.gene074050	MS.gene20954	PPI
MS.gene20954	MS.gene68406	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20954.t1	MTR_1g085150	96.871	735	23	0	1	735	1	735	0.0	1476
MS.gene20954.t1	MTR_1g110430	32.143	504	321	9	225	710	269	769	1.84e-68	240
MS.gene20954.t1	MTR_8g009900	26.457	223	133	7	227	428	55	267	2.27e-11	67.4
MS.gene20954.t1	MTR_8g009900	26.457	223	133	7	227	428	55	267	5.10e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20954.t1	AT5G26710	73.167	723	181	5	8	729	6	716	0.0	1121
MS.gene20954.t1	AT1G25350	31.423	506	323	9	225	710	269	770	9.09e-66	233
MS.gene20954.t1	AT1G25350	29.746	511	330	10	225	710	269	775	3.50e-57	209

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Find 181 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCAGCCAGTCGTCA+AGG	0.611058	1.3:-60561302	MS.gene20954:CDS
AAAAGATGTTGAGACGTTGG+GGG	0.753350	1.3:-60561014	MS.gene20954:CDS
AAAATCTCAATCTCATGGAA+TGG	0.472161	1.3:-60560154	MS.gene20954:CDS
AAAATGGAAAAGTTGAATCA+TGG	0.436219	1.3:-60560445	MS.gene20954:CDS
AAAATTAATTAGCCAGGGTA+AGG	0.515011	1.3:-60560930	MS.gene20954:CDS
AAATCTCAATCTCATGGAAT+GGG	0.463289	1.3:-60560153	MS.gene20954:CDS
AAATGATTGCAGGATCAGAG+AGG	0.689429	1.3:-60560799	MS.gene20954:CDS
AAATGATTTAGAAGCTTGCC+AGG	0.451118	1.3:-60563200	MS.gene20954:intron
AAATGGAAAAGTTGAATCAT+GGG	0.512472	1.3:-60560444	MS.gene20954:CDS
AACAGATGCACCACGAAATT+TGG	0.212650	1.3:+60563273	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCTCAATCTCATGGAA+TGG	-	chr1.3:60561929-60561948	MS.gene20954:CDS	30.0%
AAAATTAATTAGCCAGGGTA+AGG	-	chr1.3:60561153-60561172	MS.gene20954:CDS	30.0%
AAATCTCAATCTCATGGAAT+GGG	-	chr1.3:60561930-60561949	MS.gene20954:CDS	30.0%
AAATTAAAGCCAAGGCTTAT+TGG	+	chr1.3:60562819-60562838	None:intergenic	30.0%
AACGATAATAAACAGGATCA+CGG	+	chr1.3:60561366-60561385	None:intergenic	30.0%
AAGCTACCACATATACAAAA+AGG	-	chr1.3:60562115-60562134	MS.gene20954:intron	30.0%
AATAGGAGAGTGATAGTTTA+AGG	-	chr1.3:60559817-60559836	MS.gene20954:CDS	30.0%
AATATCAAAATCTTGCACGA+TGG	-	chr1.3:60560660-60560679	MS.gene20954:CDS	30.0%
AGCAATATTTACTGCTTGTT+TGG	+	chr1.3:60559683-60559702	None:intergenic	30.0%
AGGTAAAGTTGAATAGGTAT+AGG	+	chr1.3:60560231-60560250	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	60558592	60563513	60558592	ID=MS.gene20954
chr1.3	mRNA	60558592	60563513	60558592	ID=MS.gene20954.t1;Parent=MS.gene20954
chr1.3	exon	60563368	60563513	60563368	ID=MS.gene20954.t1.exon1;Parent=MS.gene20954.t1
chr1.3	CDS	60563368	60563513	60563368	ID=cds.MS.gene20954.t1;Parent=MS.gene20954.t1
chr1.3	exon	60563201	60563297	60563201	ID=MS.gene20954.t1.exon2;Parent=MS.gene20954.t1
chr1.3	CDS	60563201	60563297	60563201	ID=cds.MS.gene20954.t1;Parent=MS.gene20954.t1
chr1.3	exon	60561898	60562051	60561898	ID=MS.gene20954.t1.exon3;Parent=MS.gene20954.t1
chr1.3	CDS	60561898	60562051	60561898	ID=cds.MS.gene20954.t1;Parent=MS.gene20954.t1
chr1.3	exon	60560361	60561484	60560361	ID=MS.gene20954.t1.exon4;Parent=MS.gene20954.t1
chr1.3	CDS	60560361	60561484	60560361	ID=cds.MS.gene20954.t1;Parent=MS.gene20954.t1
chr1.3	exon	60559719	60560186	60559719	ID=MS.gene20954.t1.exon5;Parent=MS.gene20954.t1
chr1.3	CDS	60559719	60560186	60559719	ID=cds.MS.gene20954.t1;Parent=MS.gene20954.t1
chr1.3	exon	60558592	60558810	60558592	ID=MS.gene20954.t1.exon6;Parent=MS.gene20954.t1
chr1.3	CDS	60558592	60558810	60558592	ID=cds.MS.gene20954.t1;Parent=MS.gene20954.t1

Gene Sequence

>MS.gene20954

ATGGATATCAAAATCAAAACCCTTTCCTTCTCCGCCGCCGCGCCACCGTTAGCGGGGATCGCCGCATCCAAACTCGCCGGATTCTCTCCATCCATCGACACCTCCCTTCCTCCTGATTCCGTCCCCACATTTCTCTTGTCCAACGGGTACGTTTCCTTTCTCATATCTTTTCCTCGTTTCTATGATCTATTAATAATTTGCAATTATTCGTAACAGCTCCAAATTTCGTGGTGCATCTGTTCTTCTGCGTCACATTGGAAGAACTGCAACCCTTCCTAATTTCTATGGCCAAAATGATTTAGAAGCTTGCCAGGTTAGATGTTTTAGTCAAATTAAAGATTTTTAGTGGAATTATTTGTTTACATTGAATAAGTGATGTTGTCTAAGGATAGAGTTTTTAATTGTTAAGGCCATGTTTGCAGCTTATTATAGAACGACTACATGTCCTTGTGAGCTTAATATATACAAGGTTCAGGGTTCGAACCCCGGACACCACCCAAAAAAAAATAGAACGAGTACTTGTCATGATAAGCACTTATGTATAAGGGTCTGTTTGATAAGACATAATTTTGAGTTTATAGTTTATAGTTTATGTCTTATAAGCTCATTTGTCTGAAAAAGACTTGTTTGGAATCCATCACTTTCTCACAAGCTTATAGCGTTTTTTGTTTAGCTAATCCAACTAGCTTAAAGCTTATAGCTTTTCATTATTTATCTCAATTTAACCCTGTAATCTTAATTGATTTTTTTTTTAAGTATTCATTAAATATAATCACTTTTATGTCATTTCATATTTATTAGTTAGTTCAACTGCCAATTTTACCAAACACTACATATTCAATCAATTAGCTTATTAGCTATCAGCTATTCATTATCTTTTTTACCAAACGGAGCCTAAACTATTTTTTTTTCATAGCAAACGATAAAATGTAGTTAACTTGTTTTTGTATAGGCTATAAGTTGTTTTCATAAGCTATCTTGGAAATAAGCTGAAAAAAGCTTATGAAAAATGTCATAAGCTGTTTCCACAAGTTCTTCCAAACCGTCTTGCAAAACTTATGCCAGTAGATAAACTCAAATAAGCCAATCCAAACAAGCAGTAAATATTGCTCAAGTGAACCTTCAATTTGGGTCCCACTTTCTCTCCTATTGGGTCCTTGAACTACAGAAATATCATAACCAGTCTTGAAACTATTTTCGATAGTTAGTCCTTGGTTTCTTTCAAAATAGGAGAGTGATAGTTTAAGGACCCAAATTGATTGATTGATTGACAATAGGTTAGGGTTTGTTAATTAGAATTCTATAGTTCAGTGACAAAATTTGAGGGTGAGTGATTGTTTAGGGATCAAATTGAAGGTTTGCTCGTATTTCTTTTGTTAGTTGTTGTTTGCTTCTGGTTGTTAGCTCCGTCATTCAATTGTTTATTGTTTTTTACTTATTTCCTCTTTCTTGGACTTTTCAGATTGATGAATTGCTAGAGTATGCACCTGTACTCTCATCAGGCCCTGCTTTTGAAAATGGATGCAAGTATATTGATGACTACTTGGAGAAGCGTACATTTTTAGTTGGTTATTCGTTATCAATCGCAGATCTAGCTATCTGGGCAGGTCTTGCAGGTAAATATATTTATATGATACCTATACCTATTCAACTTTACCTGTGATACTACTACTGAGTCTCTTTTAAACATCCTTCCTATGGAAAAGGAAAACCTTGTGCTTGTTTAGTGATTGCATTTTGTGGTTATTTCCTAGTTGTATCCCTGCTGACAGGGTTTATTGTTGCCTTATATGGAATATAGCTTGCAACATAAACTAGATCCGCTTTGCTCTATTGTTTGGACAACAATAATCTATTGTTGTGGCTGATTGTTTTGTTTAATTTCATTATAGTCTGTGGCTCTGTGCAGCTAAATTACTCTATCTTCTATTTCTCTATTCTTTGGTAACTTCACTGCATTAGTTTCTTCAACCTTAATCTATGAAACTTGATGGTTCATGTCATCGCCATCTACATTATGCCTTTTCAGGTGCTGGAAAGAGATGGGAAAGCTTGAGGAAATCAAAGAAATATCAAAATCTTGCACGATGGTACAATTCAATAGTTGCAGAACATAGTACTGCCTTAAACGAAGTCACAGCAACATATATTGGCAAAAAAGGAGTGGGAGAGCCATCTGCAACCAAGCCAAAAGACCAGCCAGTCGTCAAGGATAAAGTAAAGAATGTGAATGGGGATGTTTCTGATAACATTAAGGGAGGAGGCAAGCCTTCAGCAGAGATAGATCTTCCAGCTGCTGAAGTTGGAAAAGTTCGCTTGCGATTTGCACCTGAACCCAGTGGCTATCTTCACATTGGACACTCAAAAGCAGCTCTGTTGAACAAGTATTTTGCTGAACGATACCAAGGTCAGGTTATTTTGCGTTTCGATGATACAAATCCTGCTAAAGAAAGTAATGAATTTGTGGACAATTTGATAAAAGATGTTGAGACGTTGGGGGTCAAATATGAAAGAATTACATATACATCAGATTACTTCCCTGAGTTGATGGAACTGGCTGAAAAATTAATTAGCCAGGGTAAGGCGTACGTTGATGACACTCCACGTGAACAAATGCAAAAGGAGAGAATGGATGGCATAGACTCTAAATGCAGAAACCATAGTGTTGAGGAGAATTTGAAATTATGGAAGGAAATGATTGCAGGATCAGAGAGGGGTTTGCAGTGTTGTGTCCGTGGGAAGTTGGATATGCAAGATCCAAACAAATCACTCCGTGATCCTGTTTATTATCGTTGCAATCCAATGCCTCATCATAGAATTGGGTCCAAGTATAAAGTGTATCCAACTTATGATTTTGCTTGTCCATTTGTTGATGCTCATGAAGGTATCACTCATGCCCTTCGGTCAAGTGAATACCATGATCGTAATGCTCAGTATTACAGGATTCAAGCGGACATGGGTGTTACGAGAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTCTATGGTTTGTCCAAAATGGAAAAGTTGAATCATGGGATGATCCACGATTTCCTACAGTGCAAGGAATTGTGCGTAGAGGCTTGAAAATTGAAGCTCTAATCCAATTTATTGTTGAACAAGTATGTACAAGGTTTTGCTTTCTTTTATACATCTAAAAGAAAATATGCACTTACTAACAAATAAGAAATACAGTAGAATATGGCATTTAGTTGTCATACTTTTTTCTTCTTTTTTACTTTTTTGTTGTATATCCATGCTTAAAATGTTTATCACTCCTCTCTGTACTTGTACAGGGGGCATCAAAAAATCTCAATCTCATGGAATGGGACAAGCTCTGGACCATCAATAAGAAGATTATTGACCCTGTATGTCCCAGACACACTGCTGTCATTGCGGATAGACGTGTATTGTTAACCCTCACTGATGGTCCTGCGAAATCATTTGTCCGCATCATACCTAGGCACAAAAAGTATGAAGCTGCTGGGAATAAAGCTACCACATATACAAAAAGGATATGGATTGACTATGCTGACGCAGAGTCTGTATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAGTAGAGAAGGACCAAGTTGGGAATGTCAAAGGGTTAAGTGGTGTTTTACATCTTGAAGGATCTGTGAAGACCACAAAACTGAAGCTCACTTGGCTACCTGAGTTAGATGAATTAGTTAGCCTGACATTGATGGAGTTTGATTACCTCATTACGAAGAAAAAGGTATGTGCTTGTCTTCTGTTTGTTTCTGTCATTAATGAAGGAAAATATATAATATGTGAACAGTTGATGTATTTCTTTTGATTGGCTGTATCTATGGCATTTGTGCTCATGAAAGAATTGCACTTCATTAATATTGGGTCGAAGTGTGAAACATTAGTTCTTCTGCAAAGTGTCCTACGAAAGACACTTCTTATTTGATCTTGCTGTCTGTTTGTCATTGCATTATCTATCCATTTGGCCTGTATAATTTTTTGTGTTTACATCATATTTAGCTTATTCTTTATATTATGTTCAGCATAGCCGCAAAGGATAAGAAACTAATCTATACACTACCATCAGGCAGCCACCTTCCCATCCTCCAGCCACCGACACTTGATCAAGACTGCCATCACTCGGTGGCCCCCACCTCTCTATCAATCGTATCACCCACCAATAAGCCTTGGCTTTAATTTGAGAGAGAAAAATGACACTTTGGTCTAAGTGGATATTTGTTTATACTGTAAGGTGTTTATGCAATTGTGCATCTCACCATATATGTTATAAGAATTTATTAACAGCTATTGTCTGACCTTTCATGAATCTTCCATGGAACTAGTTTTATAGCACCATATTGTCCTTATTATTGTCCATCCTGACCCCATTCTCTTAAAAGTGCATACCCTATGCATATACCTGTTTGCTTCAGTGTTGAGTATTGGCATAGAATTTATGCAATTAGTCCTTATCTCATTTTTATTTGAAACTCTCTTAAAAGTGCATATCCTATGTATATACCTAATCCCATTCTCTTAAAAGTGCATACCCTATGCATAGACACTTTGGTTCAGTGTTCATTTTATCTACTCATACTTAATATACGTCAAACCTGCTTGCTTCCCTGTTTAAGTTTATATTTGCTTTGTTTGCAGCTTGAGGAAGGAGAGGATTTCATTGATGTGCTTAACCCTTGCACAAAAAAGGAGACTCTAGCATATGGAGACTCCAATATGCGAAATCTTAAGCGTGGAGAAGTATTGCAGCTGGAGAGAAAGGGATATTTCAGGTGTGATGTACCCTTCGTCCGGCCTTCGAAACCAATCGTGTTATTTGCAATCCCAGATGGCAGGCAGCAGACATCTTTGAAGTAA

Protein sequence

>MS.gene20954.t1

MDIKIKTLSFSAAAPPLAGIAASKLAGFSPSIDTSLPPDSVPTFLLSNGSKFRGASVLLRHIGRTATLPNFYGQNDLEACQIDELLEYAPVLSSGPAFENGCKYIDDYLEKRTFLVGYSLSIADLAIWAGLAGAGKRWESLRKSKKYQNLARWYNSIVAEHSTALNEVTATYIGKKGVGEPSATKPKDQPVVKDKVKNVNGDVSDNIKGGGKPSAEIDLPAAEVGKVRLRFAPEPSGYLHIGHSKAALLNKYFAERYQGQVILRFDDTNPAKESNEFVDNLIKDVETLGVKYERITYTSDYFPELMELAEKLISQGKAYVDDTPREQMQKERMDGIDSKCRNHSVEENLKLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPMPHHRIGSKYKVYPTYDFACPFVDAHEGITHALRSSEYHDRNAQYYRIQADMGVTRVLIYEFSRLNMVYTLLSKRKLLWFVQNGKVESWDDPRFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADRRVLLTLTDGPAKSFVRIIPRHKKYEAAGNKATTYTKRIWIDYADAESVSAGEEVTLMDWGNAIVKEVEKDQVGNVKGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYLITKKKLEEGEDFIDVLNPCTKKETLAYGDSNMRNLKRGEVLQLERKGYFRCDVPFVRPSKPIVLFAIPDGRQQTSLK