Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22218.t1 | XP_013459620.1 | 97.1 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 8.00E-162 | 579.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22218.t1 | Q9FNN2 | 48.0 | 269 | 124 | 5 | 1 | 255 | 1 | 267 | 5.1e-56 | 219.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22218.t1 | A0A072UW48 | 97.1 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 5.8e-162 | 579.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene22218 | -0.838388 | 2.96E-57 | -1.69E-46 |
| MS.gene049680 | MS.gene22218 | 0.803386 | 3.57E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene22218 | 0.841177 | 5.56E-58 | -1.69E-46 |
| MS.gene050955 | MS.gene22218 | 0.836351 | 9.85E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene22218 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene05134 | MS.gene22218 | 0.820463 | 6.77E-53 | -1.69E-46 |
| MS.gene051363 | MS.gene22218 | 0.820274 | 7.48E-53 | -1.69E-46 |
| MS.gene051365 | MS.gene22218 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene22218 | 0.83437 | 3.12E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene22218 | 0.813963 | 1.96E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene22218 | 0.801216 | 1.00E-48 | -1.69E-46 |
| MS.gene054403 | MS.gene22218 | 0.844879 | 5.75E-59 | -1.69E-46 |
| MS.gene05469 | MS.gene22218 | 0.826563 | 2.53E-54 | -1.69E-46 |
| MS.gene055555 | MS.gene22218 | 0.822658 | 2.11E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene22218 | 0.821502 | 3.90E-53 | -1.69E-46 |
| MS.gene057705 | MS.gene22218 | 0.811837 | 5.73E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene22218 | 0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene22218 | 0.813855 | 2.07E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene22218 | 0.80269 | 4.98E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene22218 | 0.819748 | 9.87E-53 | -1.69E-46 |
| MS.gene059151 | MS.gene22218 | 0.805828 | 1.11E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene22218 | -0.806768 | 7.01E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene22218 | 0.818731 | 1.68E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene22218 | 0.825251 | 5.19E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene22218 | 0.823885 | 1.09E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene22218 | 0.814225 | 1.72E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22218.t1 | MTR_3g449950 | 97.106 | 311 | 9 | 0 | 1 | 311 | 1 | 311 | 0.0 | 618 |
| MS.gene22218.t1 | MTR_3g449990 | 66.436 | 289 | 88 | 3 | 1 | 281 | 1 | 288 | 1.39e-114 | 343 |
| MS.gene22218.t1 | MTR_5g090420 | 58.131 | 289 | 106 | 5 | 1 | 281 | 1 | 282 | 5.94e-92 | 284 |
| MS.gene22218.t1 | MTR_1g069345 | 32.212 | 208 | 132 | 3 | 46 | 252 | 7 | 206 | 3.36e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22218.t1 | AT5G08560 | 44.781 | 297 | 147 | 6 | 1 | 283 | 1 | 294 | 2.21e-71 | 231 |
| MS.gene22218.t1 | AT5G08560 | 44.781 | 297 | 147 | 6 | 1 | 283 | 1 | 294 | 2.21e-71 | 231 |
| MS.gene22218.t1 | AT5G08560 | 44.781 | 297 | 147 | 6 | 1 | 283 | 1 | 294 | 2.21e-71 | 231 |
| MS.gene22218.t1 | AT5G43920 | 33.333 | 240 | 152 | 5 | 46 | 281 | 7 | 242 | 3.24e-27 | 111 |
Find 70 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGCCAAGGTGGTTCTTC+CGG | 0.265995 | 3.4:+40153439 | MS.gene22218:CDS |
| CTGGCCAAGGTGGTTCTTCC+GGG | 0.287686 | 3.4:+40153440 | MS.gene22218:CDS |
| AACTTGTCCAGAGCTGATTT+TGG | 0.291966 | 3.4:+40153718 | MS.gene22218:CDS |
| GAGGAGGAGGGGTTCGAAAT+AGG | 0.313413 | 3.4:-40153825 | None:intergenic |
| ACCTAATAGTTCATCTTCTA+TGG | 0.313662 | 3.4:+40152967 | MS.gene22218:CDS |
| GAAGTATAAGCTTGATTAGT+AGG | 0.346896 | 3.4:-40153667 | None:intergenic |
| GTCGTCCCCTTCGGCTGATC+GGG | 0.347053 | 3.4:-40153029 | None:intergenic |
| CTGTTTATGCAGCAAGTACT+TGG | 0.358690 | 3.4:+40153196 | MS.gene22218:CDS |
| AGCAAGTACTTGGCGGTGAT+TGG | 0.361938 | 3.4:+40153206 | MS.gene22218:CDS |
| CTAGCCACATTGAAACAAAT+TGG | 0.364435 | 3.4:+40153238 | MS.gene22218:CDS |
| TCTTCTATGGAGCACGTTGT+AGG | 0.395510 | 3.4:+40152980 | MS.gene22218:CDS |
| CGTCGTCCCCTTCGGCTGAT+CGG | 0.398819 | 3.4:-40153030 | None:intergenic |
| GACGAAGTTGTTGGCACAAA+AGG | 0.398912 | 3.4:+40153049 | MS.gene22218:CDS |
| TGAGCTTATTGATGGGGATA+AGG | 0.407133 | 3.4:+40153321 | MS.gene22218:CDS |
| TCCATAGAAGATGAACTATT+AGG | 0.439662 | 3.4:-40152968 | None:intergenic |
| TTTAAAATCTATTGAGGAGG+AGG | 0.444056 | 3.4:-40153838 | None:intergenic |
| TCCTGCTTCATGTCACCCTC+TGG | 0.448042 | 3.4:+40153421 | MS.gene22218:CDS |
| AAATCTTCCAAAATCAGCTC+TGG | 0.468825 | 3.4:-40153725 | None:intergenic |
| AGGCTCAACAAGTGACTTGA+TGG | 0.473288 | 3.4:+40153000 | MS.gene22218:CDS |
| ACCAAGCGAATACATCGCTT+TGG | 0.483200 | 3.4:-40153107 | None:intergenic |
| TTAAAATCTATTGAGGAGGA+GGG | 0.486898 | 3.4:-40153837 | None:intergenic |
| TTCATGTCACCCTCTGGCCA+AGG | 0.491036 | 3.4:+40153427 | MS.gene22218:CDS |
| AACAACTTCGTCGTCCCCTT+CGG | 0.491520 | 3.4:-40153038 | None:intergenic |
| ACATAATTTAAAATCTATTG+AGG | 0.496725 | 3.4:-40153844 | None:intergenic |
| GCAAGTACTTGGCGGTGATT+GGG | 0.500806 | 3.4:+40153207 | MS.gene22218:CDS |
| AGAAGATGAAAGCATCGTTA+AGG | 0.501049 | 3.4:+40153264 | MS.gene22218:CDS |
| GAACACCTAGAGGAGGAGTC+TGG | 0.502621 | 3.4:+40153145 | MS.gene22218:CDS |
| TTCCTTGTGTCGCAACGCGT+TGG | 0.514667 | 3.4:+40153597 | MS.gene22218:CDS |
| ATTTGTCAGTACTGCTGAAA+GGG | 0.515762 | 3.4:+40153744 | MS.gene22218:CDS |
| TGTTTCTGATGATAACGAAT+CGG | 0.517284 | 3.4:+40153693 | MS.gene22218:CDS |
| GCCAGAGGGTGACATGAAGC+AGG | 0.519258 | 3.4:-40153422 | None:intergenic |
| ATCCAACGCGTTGCGACACA+AGG | 0.527126 | 3.4:-40153599 | None:intergenic |
| TGCCCTTACAAAATCTCGCC+CGG | 0.534345 | 3.4:-40153458 | None:intergenic |
| ACCAAAGCGATGTATTCGCT+TGG | 0.535080 | 3.4:+40153106 | MS.gene22218:CDS |
| TCGTCATGTTCAGATGACTT+TGG | 0.542727 | 3.4:+40153631 | MS.gene22218:CDS |
| GAAGGGGACGACGAAGTTGT+TGG | 0.544222 | 3.4:+40153040 | MS.gene22218:CDS |
| ACGAAGTTGTTGGCACAAAA+GGG | 0.550371 | 3.4:+40153050 | MS.gene22218:CDS |
| TCAGGTATCATTACAGTCGA+GGG | 0.553135 | 3.4:-40153523 | None:intergenic |
| GTATGCCAGACTCCTCCTCT+AGG | 0.556041 | 3.4:-40153150 | None:intergenic |
| CAAGGAAGCTACTCGTTCCA+TGG | 0.556398 | 3.4:-40153581 | None:intergenic |
| AGCTACTCGTTCCATGGTGA+GGG | 0.556455 | 3.4:-40153575 | None:intergenic |
| TTCAGGTATCATTACAGTCG+AGG | 0.557702 | 3.4:-40153524 | None:intergenic |
| TTTATGCAGCAAGTACTTGG+CGG | 0.558318 | 3.4:+40153199 | MS.gene22218:CDS |
| GCTCCGCCCCGATCAGCCGA+AGG | 0.562506 | 3.4:+40153022 | MS.gene22218:CDS |
| GTTGGTTATTATTTCATGGG+AGG | 0.563350 | 3.4:+40152902 | None:intergenic |
| TAAAATCTATTGAGGAGGAG+GGG | 0.564663 | 3.4:-40153836 | None:intergenic |
| TTATTATTTCATGGGAGGTG+TGG | 0.569082 | 3.4:+40152907 | None:intergenic |
| CTGCTCCAATATTAAAAGTG+AGG | 0.572912 | 3.4:-40153290 | None:intergenic |
| GAAGAACCACCTTGGCCAGA+GGG | 0.573757 | 3.4:-40153436 | None:intergenic |
| CTCCGCCCCGATCAGCCGAA+GGG | 0.575025 | 3.4:+40153023 | MS.gene22218:CDS |
| AAGCTACTCGTTCCATGGTG+AGG | 0.576410 | 3.4:-40153576 | None:intergenic |
| GATTTGTCAGTACTGCTGAA+AGG | 0.578338 | 3.4:+40153743 | MS.gene22218:CDS |
| ATGTCACCCTCTGGCCAAGG+TGG | 0.595449 | 3.4:+40153430 | MS.gene22218:CDS |
| TCCGCCCCGATCAGCCGAAG+GGG | 0.596037 | 3.4:+40153024 | MS.gene22218:CDS |
| TATACCAATTTGTTTCAATG+TGG | 0.605452 | 3.4:-40153242 | None:intergenic |
| CTCGCCCGGAAGAACCACCT+TGG | 0.608997 | 3.4:-40153444 | None:intergenic |
| TCGTCCCCTTCGGCTGATCG+GGG | 0.610635 | 3.4:-40153028 | None:intergenic |
| TAATTTAAAATCTATTGAGG+AGG | 0.624087 | 3.4:-40153841 | None:intergenic |
| TTTACCGCAGACGAATTCAA+AGG | 0.627122 | 3.4:-40153172 | None:intergenic |
| GGAAGAACCACCTTGGCCAG+AGG | 0.628654 | 3.4:-40153437 | None:intergenic |
| TCCCCTTCGGCTGATCGGGG+CGG | 0.629349 | 3.4:-40153025 | None:intergenic |
| TGTCAGTACTGCTGAAAGGG+TGG | 0.632691 | 3.4:+40153747 | MS.gene22218:CDS |
| TCGAGGCATTGAATACATTG+AGG | 0.634411 | 3.4:+40153347 | MS.gene22218:CDS |
| CAGGTATCATTACAGTCGAG+GGG | 0.643753 | 3.4:-40153522 | None:intergenic |
| GAGTGGGGAACACCTAGAGG+AGG | 0.656225 | 3.4:+40153138 | MS.gene22218:CDS |
| CATACCTTTGAATTCGTCTG+CGG | 0.656627 | 3.4:+40153168 | MS.gene22218:CDS |
| AAATCGGTTGAAACTGCTGG+AGG | 0.679706 | 3.4:+40153483 | MS.gene22218:CDS |
| AAAGAGTGGGGAACACCTAG+AGG | 0.683816 | 3.4:+40153135 | MS.gene22218:CDS |
| AGTTGAACAAGCCCTCACCA+TGG | 0.691356 | 3.4:+40153564 | MS.gene22218:CDS |
| TGATGGGGATAAGGTCATCG+AGG | 0.725311 | 3.4:+40153330 | MS.gene22218:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTGAGCTTATTGA+TGG | + | chr3.4:40153313-40153332 | MS.gene22218:CDS | 20.0% |
| !!! | AATTTTTTGAGCTTATTGAT+GGG | + | chr3.4:40153314-40153333 | MS.gene22218:CDS | 20.0% |
| !! | ATTTTGTAAGGGCAAAAAAT+CGG | + | chr3.4:40153467-40153486 | MS.gene22218:CDS | 25.0% |
| !! | TATACCAATTTGTTTCAATG+TGG | - | chr3.4:40153245-40153264 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAGCTTATTGATG+GGG | + | chr3.4:40153315-40153334 | MS.gene22218:CDS | 25.0% |
| AAAAGGGAGCTTAAAAAGAA+GGG | + | chr3.4:40153066-40153085 | MS.gene22218:CDS | 30.0% | |
| ACCTAATAGTTCATCTTCTA+TGG | + | chr3.4:40152967-40152986 | MS.gene22218:CDS | 30.0% | |
| GAAGTATAAGCTTGATTAGT+AGG | - | chr3.4:40153670-40153689 | None:intergenic | 30.0% | |
| TAAAAAGAAGGGAGTTTGTA+AGG | + | chr3.4:40153077-40153096 | MS.gene22218:CDS | 30.0% | |
| TCCATAGAAGATGAACTATT+AGG | - | chr3.4:40152971-40152990 | None:intergenic | 30.0% | |
| ! | AATTTCGTTCTTTTCAAAGC+TGG | - | chr3.4:40152944-40152963 | None:intergenic | 30.0% |
| ! | AGATGTTCTAATCTCTTTTC+AGG | - | chr3.4:40153544-40153563 | None:intergenic | 30.0% |
| ! | TGTTTCTGATGATAACGAAT+CGG | + | chr3.4:40153693-40153712 | MS.gene22218:CDS | 30.0% |
| AAAAAATCGGTTGAAACTGC+TGG | + | chr3.4:40153480-40153499 | MS.gene22218:CDS | 35.0% | |
| AAATCTTCCAAAATCAGCTC+TGG | - | chr3.4:40153728-40153747 | None:intergenic | 35.0% | |
| ATTTGTCAGTACTGCTGAAA+GGG | + | chr3.4:40153744-40153763 | MS.gene22218:CDS | 35.0% | |
| CAAAAGGGAGCTTAAAAAGA+AGG | + | chr3.4:40153065-40153084 | MS.gene22218:CDS | 35.0% | |
| CTAGCCACATTGAAACAAAT+TGG | + | chr3.4:40153238-40153257 | MS.gene22218:CDS | 35.0% | |
| CTGCTCCAATATTAAAAGTG+AGG | - | chr3.4:40153293-40153312 | None:intergenic | 35.0% | |
| !! | AGAAGATGAAAGCATCGTTA+AGG | + | chr3.4:40153264-40153283 | MS.gene22218:CDS | 35.0% |
| ACGAAGTTGTTGGCACAAAA+GGG | + | chr3.4:40153050-40153069 | MS.gene22218:CDS | 40.0% | |
| CATACCTTTGAATTCGTCTG+CGG | + | chr3.4:40153168-40153187 | MS.gene22218:CDS | 40.0% | |
| CGCTTGGTTACAAAAAGAGT+GGG | + | chr3.4:40153122-40153141 | MS.gene22218:CDS | 40.0% | |
| CTGTTTATGCAGCAAGTACT+TGG | + | chr3.4:40153196-40153215 | MS.gene22218:CDS | 40.0% | |
| GATTTGTCAGTACTGCTGAA+AGG | + | chr3.4:40153743-40153762 | MS.gene22218:CDS | 40.0% | |
| GCTTGGTTACAAAAAGAGTG+GGG | + | chr3.4:40153123-40153142 | MS.gene22218:CDS | 40.0% | |
| TCAGGTATCATTACAGTCGA+GGG | - | chr3.4:40153526-40153545 | None:intergenic | 40.0% | |
| TCGCTTGGTTACAAAAAGAG+TGG | + | chr3.4:40153121-40153140 | MS.gene22218:CDS | 40.0% | |
| TCGTCATGTTCAGATGACTT+TGG | + | chr3.4:40153631-40153650 | MS.gene22218:CDS | 40.0% | |
| TGAGCTTATTGATGGGGATA+AGG | + | chr3.4:40153321-40153340 | MS.gene22218:CDS | 40.0% | |
| TTCAGGTATCATTACAGTCG+AGG | - | chr3.4:40153527-40153546 | None:intergenic | 40.0% | |
| TTTACCGCAGACGAATTCAA+AGG | - | chr3.4:40153175-40153194 | None:intergenic | 40.0% | |
| TTTATGCAGCAAGTACTTGG+CGG | + | chr3.4:40153199-40153218 | MS.gene22218:CDS | 40.0% | |
| !! | AACTTGTCCAGAGCTGATTT+TGG | + | chr3.4:40153718-40153737 | MS.gene22218:CDS | 40.0% |
| !! | GGCTGCCTCACTTTTAATAT+TGG | + | chr3.4:40153285-40153304 | MS.gene22218:CDS | 40.0% |
| !! | TCGAGGCATTGAATACATTG+AGG | + | chr3.4:40153347-40153366 | MS.gene22218:CDS | 40.0% |
| AAATCGGTTGAAACTGCTGG+AGG | + | chr3.4:40153483-40153502 | MS.gene22218:CDS | 45.0% | |
| ACCAAAGCGATGTATTCGCT+TGG | + | chr3.4:40153106-40153125 | MS.gene22218:CDS | 45.0% | |
| ACCAAGCGAATACATCGCTT+TGG | - | chr3.4:40153110-40153129 | None:intergenic | 45.0% | |
| AGGCTCAACAAGTGACTTGA+TGG | + | chr3.4:40153000-40153019 | MS.gene22218:CDS | 45.0% | |
| CAGGTATCATTACAGTCGAG+GGG | - | chr3.4:40153525-40153544 | None:intergenic | 45.0% | |
| GACGAAGTTGTTGGCACAAA+AGG | + | chr3.4:40153049-40153068 | MS.gene22218:CDS | 45.0% | |
| TCTTCTATGGAGCACGTTGT+AGG | + | chr3.4:40152980-40152999 | MS.gene22218:CDS | 45.0% | |
| ! | TTCCGGGCGAGATTTTGTAA+GGG | + | chr3.4:40153456-40153475 | MS.gene22218:CDS | 45.0% |
| AAAGAGTGGGGAACACCTAG+AGG | + | chr3.4:40153135-40153154 | MS.gene22218:CDS | 50.0% | |
| AACAACTTCGTCGTCCCCTT+CGG | - | chr3.4:40153041-40153060 | None:intergenic | 50.0% | |
| AAGCTACTCGTTCCATGGTG+AGG | - | chr3.4:40153579-40153598 | None:intergenic | 50.0% | |
| AGCAAGTACTTGGCGGTGAT+TGG | + | chr3.4:40153206-40153225 | MS.gene22218:CDS | 50.0% | |
| AGCTACTCGTTCCATGGTGA+GGG | - | chr3.4:40153578-40153597 | None:intergenic | 50.0% | |
| AGTTGAACAAGCCCTCACCA+TGG | + | chr3.4:40153564-40153583 | MS.gene22218:CDS | 50.0% | |
| CAAGGAAGCTACTCGTTCCA+TGG | - | chr3.4:40153584-40153603 | None:intergenic | 50.0% | |
| GCAAGTACTTGGCGGTGATT+GGG | + | chr3.4:40153207-40153226 | MS.gene22218:CDS | 50.0% | |
| TGATGGGGATAAGGTCATCG+AGG | + | chr3.4:40153330-40153349 | MS.gene22218:CDS | 50.0% | |
| TGCCCTTACAAAATCTCGCC+CGG | - | chr3.4:40153461-40153480 | None:intergenic | 50.0% | |
| TGTCAGTACTGCTGAAAGGG+TGG | + | chr3.4:40153747-40153766 | MS.gene22218:CDS | 50.0% | |
| ! | CTTCCGGGCGAGATTTTGTA+AGG | + | chr3.4:40153455-40153474 | MS.gene22218:CDS | 50.0% |
| ATCCAACGCGTTGCGACACA+AGG | - | chr3.4:40153602-40153621 | None:intergenic | 55.0% | |
| GAACACCTAGAGGAGGAGTC+TGG | + | chr3.4:40153145-40153164 | MS.gene22218:CDS | 55.0% | |
| GAAGAACCACCTTGGCCAGA+GGG | - | chr3.4:40153439-40153458 | None:intergenic | 55.0% | |
| GAAGGGGACGACGAAGTTGT+TGG | + | chr3.4:40153040-40153059 | MS.gene22218:CDS | 55.0% | |
| GAGGAGGAGGGGTTCGAAAT+AGG | - | chr3.4:40153828-40153847 | None:intergenic | 55.0% | |
| GTATGCCAGACTCCTCCTCT+AGG | - | chr3.4:40153153-40153172 | None:intergenic | 55.0% | |
| TCCTGCTTCATGTCACCCTC+TGG | + | chr3.4:40153421-40153440 | MS.gene22218:CDS | 55.0% | |
| TCTGGCCAAGGTGGTTCTTC+CGG | + | chr3.4:40153439-40153458 | MS.gene22218:CDS | 55.0% | |
| TTCATGTCACCCTCTGGCCA+AGG | + | chr3.4:40153427-40153446 | MS.gene22218:CDS | 55.0% | |
| TTCCTTGTGTCGCAACGCGT+TGG | + | chr3.4:40153597-40153616 | MS.gene22218:CDS | 55.0% | |
| ATGTCACCCTCTGGCCAAGG+TGG | + | chr3.4:40153430-40153449 | MS.gene22218:CDS | 60.0% | |
| CTGGCCAAGGTGGTTCTTCC+GGG | + | chr3.4:40153440-40153459 | MS.gene22218:CDS | 60.0% | |
| GAGTGGGGAACACCTAGAGG+AGG | + | chr3.4:40153138-40153157 | MS.gene22218:CDS | 60.0% | |
| GCCAGAGGGTGACATGAAGC+AGG | - | chr3.4:40153425-40153444 | None:intergenic | 60.0% | |
| GGAAGAACCACCTTGGCCAG+AGG | - | chr3.4:40153440-40153459 | None:intergenic | 60.0% | |
| CGTCGTCCCCTTCGGCTGAT+CGG | - | chr3.4:40153033-40153052 | None:intergenic | 65.0% | |
| CTCGCCCGGAAGAACCACCT+TGG | - | chr3.4:40153447-40153466 | None:intergenic | 65.0% | |
| GTCGTCCCCTTCGGCTGATC+GGG | - | chr3.4:40153032-40153051 | None:intergenic | 65.0% | |
| TCGTCCCCTTCGGCTGATCG+GGG | - | chr3.4:40153031-40153050 | None:intergenic | 65.0% | |
| CTCCGCCCCGATCAGCCGAA+GGG | + | chr3.4:40153023-40153042 | MS.gene22218:CDS | 70.0% | |
| TCCCCTTCGGCTGATCGGGG+CGG | - | chr3.4:40153028-40153047 | None:intergenic | 70.0% | |
| TCCGCCCCGATCAGCCGAAG+GGG | + | chr3.4:40153024-40153043 | MS.gene22218:CDS | 70.0% | |
| GCTCCGCCCCGATCAGCCGA+AGG | + | chr3.4:40153022-40153041 | MS.gene22218:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 40152917 | 40153852 | 40152917 | ID=MS.gene22218 |
| chr3.4 | mRNA | 40152917 | 40153852 | 40152917 | ID=MS.gene22218.t1;Parent=MS.gene22218 |
| chr3.4 | exon | 40152917 | 40153852 | 40152917 | ID=MS.gene22218.t1.exon1;Parent=MS.gene22218.t1 |
| chr3.4 | CDS | 40152917 | 40153852 | 40152917 | ID=cds.MS.gene22218.t1;Parent=MS.gene22218.t1 |
| Gene Sequence |
| Protein sequence |
