Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23013.t1 | XP_003625863.1 | 78.6 | 192 | 41 | 0 | 1 | 192 | 1 | 192 | 3.90E-34 | 154.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23013.t1 | G7KQY9 | 78.6 | 192 | 41 | 0 | 1 | 192 | 1 | 192 | 2.8e-34 | 154.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene23013 | 0.808055 | 3.74E-50 | -1.69E-46 |
| MS.gene049178 | MS.gene23013 | 0.849972 | 2.29E-60 | -1.69E-46 |
| MS.gene049501 | MS.gene23013 | 0.810097 | 1.37E-50 | -1.69E-46 |
| MS.gene04984 | MS.gene23013 | 0.820343 | 7.21E-53 | -1.69E-46 |
| MS.gene050114 | MS.gene23013 | 0.856601 | 2.88E-62 | -1.69E-46 |
| MS.gene050317 | MS.gene23013 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene050439 | MS.gene23013 | 0.826473 | 2.66E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene23013 | 0.803651 | 3.15E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene23013 | 0.805195 | 1.50E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene23013 | 0.811698 | 6.15E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene23013 | 0.800092 | 1.70E-48 | -1.69E-46 |
| MS.gene051757 | MS.gene23013 | 0.82413 | 9.54E-54 | -1.69E-46 |
| MS.gene051790 | MS.gene23013 | 0.852045 | 5.97E-61 | -1.69E-46 |
| MS.gene05188 | MS.gene23013 | 0.815659 | 8.26E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene23013 | 0.804349 | 2.25E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene23013 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene23013 | 0.805582 | 1.25E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene23013 | 0.84537 | 4.24E-59 | -1.69E-46 |
| MS.gene055311 | MS.gene23013 | 0.813444 | 2.55E-51 | -1.69E-46 |
| MS.gene055313 | MS.gene23013 | 0.811816 | 5.79E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene23013 | 0.810535 | 1.10E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene23013 | 0.807985 | 3.87E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene23013 | 0.833271 | 5.87E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene23013 | 0.805744 | 1.15E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene23013 | 0.827232 | 1.75E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene23013 | 0.80153 | 8.62E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene23013 | 0.804101 | 2.54E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene23013 | 0.814116 | 1.82E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene23013 | 0.828998 | 6.58E-55 | -1.69E-46 |
| MS.gene058084 | MS.gene23013 | 0.810959 | 8.89E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene23013 | 0.804811 | 1.81E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene23013 | 0.803629 | 3.18E-49 | -1.69E-46 |
| MS.gene058654 | MS.gene23013 | 0.81992 | 9.01E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene23013 | 0.833246 | 5.95E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene23013 | 0.830387 | 3.02E-55 | -1.69E-46 |
| MS.gene059249 | MS.gene23013 | 0.800351 | 1.50E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene23013 | 0.81611 | 6.55E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene23013 | 0.823013 | 1.74E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene23013 | 0.835392 | 1.72E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene23013 | 0.81292 | 3.33E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene23013 | 0.822939 | 1.81E-53 | -1.69E-46 |
| MS.gene060869 | MS.gene23013 | 0.859007 | 5.57E-63 | -1.69E-46 |
| MS.gene060870 | MS.gene23013 | 0.852945 | 3.31E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23013.t1 | MTR_7g108100 | 95.833 | 192 | 8 | 0 | 1 | 192 | 1 | 192 | 3.82e-113 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23013.t1 | AT4G03180 | 52.406 | 187 | 70 | 4 | 9 | 189 | 7 | 180 | 1.91e-44 | 146 |
| MS.gene23013.t1 | AT4G03180 | 49.286 | 140 | 55 | 2 | 55 | 189 | 7 | 135 | 7.75e-26 | 97.1 |
Find 31 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCTGTATTTCATAAT+AGG | 0.220883 | 7.2:-6796613 | None:intergenic |
| ATACAGAATTGAACATCTTT+TGG | 0.235696 | 7.2:+6796624 | MS.gene23013:CDS |
| GTATCCACTGTTATTGGATT+TGG | 0.245614 | 7.2:-6793317 | None:intergenic |
| TGGATTGTATCCACTGTTAT+TGG | 0.269806 | 7.2:-6793323 | None:intergenic |
| ATCAAACCTCAATATGTCTT+TGG | 0.273402 | 7.2:-6796070 | None:intergenic |
| TGACGATGAAGAAGAATAAA+AGG | 0.287215 | 7.2:+6793239 | MS.gene23013:CDS |
| AGGAGGAACGTTTCGAGGTT+AGG | 0.383195 | 7.2:+6793259 | MS.gene23013:CDS |
| TCAAACCTCAATATGTCTTT+GGG | 0.414773 | 7.2:-6796069 | None:intergenic |
| TGAGAGGAGGAGAAGGAAGA+AGG | 0.463593 | 7.2:+6796420 | MS.gene23013:CDS |
| AGAGAGAGAAAGAATGGAGA+GGG | 0.467907 | 7.2:+6796492 | MS.gene23013:CDS |
| ATTTGTTGCTAGCTGAGCCT+TGG | 0.469979 | 7.2:-6796654 | None:intergenic |
| GGAGAGGGAAGCAGTATTCA+AGG | 0.482087 | 7.2:+6796507 | MS.gene23013:CDS |
| AGACTGAGGGATCATTCTGC+TGG | 0.487070 | 7.2:-6796046 | None:intergenic |
| ATAAGAATGAGAGGAGGAGA+AGG | 0.495494 | 7.2:+6796413 | MS.gene23013:CDS |
| AGTCTCCCAAAGACATATTG+AGG | 0.501893 | 7.2:+6796064 | MS.gene23013:CDS |
| ATAAAAGGAGGAACGTTTCG+AGG | 0.510507 | 7.2:+6793254 | MS.gene23013:CDS |
| AGCAGTATTCAAGGAAAAGA+AGG | 0.516229 | 7.2:+6796516 | MS.gene23013:CDS |
| GTTTCGAGGTTAGGTGGAAG+TGG | 0.520904 | 7.2:+6793268 | MS.gene23013:CDS |
| ATGTTTAAGAAGACACGAAA+AGG | 0.525206 | 7.2:+6796586 | MS.gene23013:CDS |
| AATTGCATACTTATGAGAGA+TGG | 0.531431 | 7.2:-6793343 | None:intergenic |
| AGGACAAGGATAAGAATGAG+AGG | 0.570238 | 7.2:+6796404 | MS.gene23013:CDS |
| TAGCGAAAGCATTAAGTGAA+AGG | 0.574586 | 7.2:-6793291 | None:intergenic |
| AGGAACGTTTCGAGGTTAGG+TGG | 0.588198 | 7.2:+6793262 | MS.gene23013:CDS |
| GAATTTGAATGAAACTGAAG+AGG | 0.591461 | 7.2:+6796384 | MS.gene23013:intron |
| ACAAGGATAAGAATGAGAGG+AGG | 0.593062 | 7.2:+6796407 | MS.gene23013:CDS |
| AAGAGAGAGAAAGAATGGAG+AGG | 0.596634 | 7.2:+6796491 | MS.gene23013:CDS |
| GAATGAAACTGAAGAGGACA+AGG | 0.598466 | 7.2:+6796390 | MS.gene23013:CDS |
| ATATGTCTTTGGGAGACTGA+GGG | 0.609227 | 7.2:-6796059 | None:intergenic |
| AATATGTCTTTGGGAGACTG+AGG | 0.627209 | 7.2:-6796060 | None:intergenic |
| AATGCCAAATCCAATAACAG+TGG | 0.654269 | 7.2:+6793313 | MS.gene23013:CDS |
| CGATGAAGAAGAATAAAAGG+AGG | 0.667747 | 7.2:+6793242 | MS.gene23013:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAATAATCAAAATAATA+TGG | - | chr7.2:6793507-6793526 | None:intergenic | 10.0% |
| !! | TTATATATTTAAAAACATGA+TGG | - | chr7.2:6793622-6793641 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTTTTAAAAAGA+AGG | - | chr7.2:6795527-6795546 | None:intergenic | 10.0% |
| !!! | TTTTGTAAATGTATATTTTT+AGG | + | chr7.2:6794435-6794454 | MS.gene23013:intron | 10.0% |
| !!! | TTTTTAAATATATAAGCAAT+TGG | + | chr7.2:6793627-6793646 | MS.gene23013:intron | 10.0% |
| !! | AACAATTTGATGAATAATTT+GGG | - | chr7.2:6794376-6794395 | None:intergenic | 15.0% |
| !! | ATGAATCTTTAAATGAATTA+GGG | + | chr7.2:6795279-6795298 | MS.gene23013:intron | 15.0% |
| !! | TAACAATTTGATGAATAATT+TGG | - | chr7.2:6794377-6794396 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAAAATCCAATG+AGG | + | chr7.2:6795532-6795551 | MS.gene23013:intron | 15.0% |
| !!! | ATTATCTTCATTGAATATTT+TGG | + | chr7.2:6795624-6795643 | MS.gene23013:intron | 15.0% |
| !!! | TATTTTGATTATTTTTGTGA+TGG | + | chr7.2:6793510-6793529 | MS.gene23013:intron | 15.0% |
| !!! | TTTAAAACTACTAAGATTAT+TGG | + | chr7.2:6794470-6794489 | MS.gene23013:intron | 15.0% |
| !!! | TTTTTTTTAAAAAGAAGGAA+GGG | - | chr7.2:6795522-6795541 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAAAAAGAAGGA+AGG | - | chr7.2:6795523-6795542 | None:intergenic | 15.0% |
| !! | AATTTGAATTCCATAAATAG+CGG | - | chr7.2:6796195-6796214 | None:intergenic | 20.0% |
| !! | ACAAAAAAACTTCTTTCATT+TGG | + | chr7.2:6795707-6795726 | MS.gene23013:intron | 20.0% |
| !! | CATGAATCTTTAAATGAATT+AGG | + | chr7.2:6795278-6795297 | MS.gene23013:intron | 20.0% |
| !! | GAAAAAAAAAATACTTCTCA+CGG | - | chr7.2:6795061-6795080 | None:intergenic | 20.0% |
| !! | GAAAAATAGATCTAGAAATA+GGG | + | chr7.2:6793852-6793871 | MS.gene23013:intron | 20.0% |
| !! | GACATATTAAAATATAGCAA+CGG | - | chr7.2:6795915-6795934 | None:intergenic | 20.0% |
| !! | GTATTAATTGGTACTATTAT+GGG | - | chr7.2:6794151-6794170 | None:intergenic | 20.0% |
| !! | GTTAATGTACCTAAATATAT+TGG | + | chr7.2:6794565-6794584 | MS.gene23013:intron | 20.0% |
| !! | TAATGTTCGAAAATCTTAAA+TGG | - | chr7.2:6795815-6795834 | None:intergenic | 20.0% |
| !! | TAGTAATAATAACAATCTCA+AGG | - | chr7.2:6796113-6796132 | None:intergenic | 20.0% |
| !! | TCAATTCTGTATTTCATAAT+AGG | - | chr7.2:6796616-6796635 | None:intergenic | 20.0% |
| !! | TGTATTAATTGGTACTATTA+TGG | - | chr7.2:6794152-6794171 | None:intergenic | 20.0% |
| !! | TTTAGATGATTATTTGGTTA+TGG | + | chr7.2:6795394-6795413 | MS.gene23013:intron | 20.0% |
| !!! | AGATTATAATTTGTTGTGAA+AGG | - | chr7.2:6794126-6794145 | None:intergenic | 20.0% |
| !!! | ATTATAATTTGTTGTGAAAG+GGG | - | chr7.2:6794124-6794143 | None:intergenic | 20.0% |
| !!! | CATCACTTTTAATATGATTT+GGG | + | chr7.2:6795855-6795874 | MS.gene23013:intron | 20.0% |
| !!! | GATTATAATTTGTTGTGAAA+GGG | - | chr7.2:6794125-6794144 | None:intergenic | 20.0% |
| !!! | TGAAATTAGGTTTTTTCATT+GGG | + | chr7.2:6794016-6794035 | MS.gene23013:intron | 20.0% |
| !!! | TGGTGCTTTTTAATTTAAAA+TGG | - | chr7.2:6795096-6795115 | None:intergenic | 20.0% |
| !!! | TTGTTATTATTACTATCTAC+AGG | + | chr7.2:6796118-6796137 | MS.gene23013:intron | 20.0% |
| !!! | TTTTATTTCAATGTTTGAGA+AGG | + | chr7.2:6796239-6796258 | MS.gene23013:intron | 20.0% |
| ! | AAAGAAAAAAGAATGGAAGT+AGG | + | chr7.2:6794942-6794961 | MS.gene23013:intron | 25.0% |
| ! | AATACAAATAGTCCAAACAA+AGG | - | chr7.2:6794068-6794087 | None:intergenic | 25.0% |
| ! | AGTAAACATCAATCAATGTT+AGG | - | chr7.2:6796322-6796341 | None:intergenic | 25.0% |
| ! | ATGGTATATATTCAGAATCA+GGG | - | chr7.2:6795838-6795857 | None:intergenic | 25.0% |
| ! | CCAAATCATATTAAAAGTGA+TGG | - | chr7.2:6795857-6795876 | None:intergenic | 25.0% |
| ! | GGAAAAATAGATCTAGAAAT+AGG | + | chr7.2:6793851-6793870 | MS.gene23013:intron | 25.0% |
| ! | GTTCTATTATAATTCATACC+TGG | + | chr7.2:6794796-6794815 | MS.gene23013:intron | 25.0% |
| ! | TAACATTAAGCTACATAGTT+TGG | + | chr7.2:6795015-6795034 | MS.gene23013:intron | 25.0% |
| ! | TCTTCAGAACAAATTACAAT+TGG | - | chr7.2:6795739-6795758 | None:intergenic | 25.0% |
| !! | AAATTTCTCTTTTATGACAC+AGG | - | chr7.2:6796221-6796240 | None:intergenic | 25.0% |
| !! | ATACAGAATTGAACATCTTT+TGG | + | chr7.2:6796624-6796643 | MS.gene23013:CDS | 25.0% |
| !! | ATTATTGGTCTAAATGTGAA+GGG | + | chr7.2:6794485-6794504 | MS.gene23013:intron | 25.0% |
| !! | CTTTGGTAAAGTTTTACTAT+TGG | + | chr7.2:6795570-6795589 | MS.gene23013:intron | 25.0% |
| !! | TCAGCATCTTTCATAATTTT+TGG | + | chr7.2:6793377-6793396 | MS.gene23013:intron | 25.0% |
| !!! | ATTTTGAAAAAAACAACGCA+AGG | - | chr7.2:6795669-6795688 | None:intergenic | 25.0% |
| !!! | CCATCACTTTTAATATGATT+TGG | + | chr7.2:6795854-6795873 | MS.gene23013:intron | 25.0% |
| !!! | CTGAAATTAGGTTTTTTCAT+TGG | + | chr7.2:6794015-6794034 | MS.gene23013:intron | 25.0% |
| !!! | GACTTCTAATTTCTGAAATT+AGG | + | chr7.2:6794003-6794022 | MS.gene23013:intron | 25.0% |
| !!! | GCTATATTTTAATATGTCAG+TGG | + | chr7.2:6795917-6795936 | MS.gene23013:intron | 25.0% |
| !!! | TTATAATTTGTTGTGAAAGG+GGG | - | chr7.2:6794123-6794142 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTCCACCTTTTT+GGG | + | chr7.2:6794326-6794345 | MS.gene23013:intron | 25.0% |
| AATTGCATACTTATGAGAGA+TGG | - | chr7.2:6793346-6793365 | None:intergenic | 30.0% | |
| ACAAAGAAACAAAAGCAGAA+AGG | - | chr7.2:6794675-6794694 | None:intergenic | 30.0% | |
| AGAAAAAGAGAGAGAAAGAA+TGG | + | chr7.2:6796486-6796505 | MS.gene23013:CDS | 30.0% | |
| AGATGTTGGAAGAAAATGAA+AGG | - | chr7.2:6794647-6794666 | None:intergenic | 30.0% | |
| AGGACAATAACTATATACCA+TGG | - | chr7.2:6794624-6794643 | None:intergenic | 30.0% | |
| ATCAAACCTCAATATGTCTT+TGG | - | chr7.2:6796073-6796092 | None:intergenic | 30.0% | |
| ATGTTTAAGAAGACACGAAA+AGG | + | chr7.2:6796586-6796605 | MS.gene23013:CDS | 30.0% | |
| ATTATGCTAAAATCGTAGTG+AGG | + | chr7.2:6794745-6794764 | MS.gene23013:intron | 30.0% | |
| ATTGCTGCAATTTAATGCTT+GGG | + | chr7.2:6793462-6793481 | MS.gene23013:intron | 30.0% | |
| CAAAGAAACAAAAGCAGAAA+GGG | - | chr7.2:6794674-6794693 | None:intergenic | 30.0% | |
| GAATTTGAATGAAACTGAAG+AGG | + | chr7.2:6796384-6796403 | MS.gene23013:intron | 30.0% | |
| GATGGTATATATTCAGAATC+AGG | - | chr7.2:6795839-6795858 | None:intergenic | 30.0% | |
| GGGATTCAAAGAAAAAAGAA+TGG | + | chr7.2:6794935-6794954 | MS.gene23013:intron | 30.0% | |
| GTAAAAAAGATTGCCCAAAA+AGG | - | chr7.2:6794342-6794361 | None:intergenic | 30.0% | |
| GTGCTCTTTAGATGATTATT+TGG | + | chr7.2:6795388-6795407 | MS.gene23013:intron | 30.0% | |
| GTTTGTGTTAATCATGTCTA+TGG | + | chr7.2:6795325-6795344 | MS.gene23013:intron | 30.0% | |
| TAGAACCTAAATGAGTCTTA+CGG | - | chr7.2:6794782-6794801 | None:intergenic | 30.0% | |
| TATTGCTGCAATTTAATGCT+TGG | + | chr7.2:6793461-6793480 | MS.gene23013:intron | 30.0% | |
| TCAAACCTCAATATGTCTTT+GGG | - | chr7.2:6796072-6796091 | None:intergenic | 30.0% | |
| TGACGATGAAGAAGAATAAA+AGG | + | chr7.2:6793239-6793258 | MS.gene23013:CDS | 30.0% | |
| TGATGAATAATTTGGGAAAG+AGG | - | chr7.2:6794369-6794388 | None:intergenic | 30.0% | |
| TTAGTCATAGAAGTTGTCTA+CGG | - | chr7.2:6795153-6795172 | None:intergenic | 30.0% | |
| TTATGCTAAAATCGTAGTGA+GGG | + | chr7.2:6794746-6794765 | MS.gene23013:intron | 30.0% | |
| TTTAGGTACATTAACCATGT+CGG | - | chr7.2:6794560-6794579 | None:intergenic | 30.0% | |
| ! | CTTTTCTTCTGCTCATATTT+GGG | - | chr7.2:6793565-6793584 | None:intergenic | 30.0% |
| ! | GATTATTGGTCTAAATGTGA+AGG | + | chr7.2:6794484-6794503 | MS.gene23013:intron | 30.0% |
| ! | TTCTGAAAGTCATGATGAAA+AGG | + | chr7.2:6793885-6793904 | MS.gene23013:intron | 30.0% |
| ! | TTTTGTGTTACCGCTATTTA+TGG | + | chr7.2:6796182-6796201 | MS.gene23013:intron | 30.0% |
| !! | AAATTAAAAAGCACCAAGCA+CGG | + | chr7.2:6795100-6795119 | MS.gene23013:intron | 30.0% |
| !! | CTATTTTTCCAGATTTTCTG+CGG | - | chr7.2:6793841-6793860 | None:intergenic | 30.0% |
| !!! | CTTTTAAAAGCATTCACAAG+TGG | + | chr7.2:6794819-6794838 | MS.gene23013:intron | 30.0% |
| !!! | CTTTTTTTGTTCCACCTTTT+TGG | + | chr7.2:6794325-6794344 | MS.gene23013:intron | 30.0% |
| !!! | GATTATTTTTGTGATGGATG+AGG | + | chr7.2:6793516-6793535 | MS.gene23013:intron | 30.0% |
| AAAAAGATTGCCCAAAAAGG+TGG | - | chr7.2:6794339-6794358 | None:intergenic | 35.0% | |
| AAATCTTAAATGGTCGTGAG+AGG | - | chr7.2:6795805-6795824 | None:intergenic | 35.0% | |
| AACGGAACTTCAGTTAGATA+TGG | - | chr7.2:6795897-6795916 | None:intergenic | 35.0% | |
| AAGCTCGCAGAAAAACTTTA+CGG | + | chr7.2:6796557-6796576 | MS.gene23013:CDS | 35.0% | |
| AATATGAGCAGAAGAAAAGC+TGG | + | chr7.2:6793566-6793585 | MS.gene23013:intron | 35.0% | |
| AATGCCAAATCCAATAACAG+TGG | + | chr7.2:6793313-6793332 | MS.gene23013:CDS | 35.0% | |
| ACATTAACCATGTCGGATTT+GGG | - | chr7.2:6794553-6794572 | None:intergenic | 35.0% | |
| ACTATACTTATTCGCCTCAT+TGG | - | chr7.2:6795549-6795568 | None:intergenic | 35.0% | |
| AGCAGTATTCAAGGAAAAGA+AGG | + | chr7.2:6796516-6796535 | MS.gene23013:CDS | 35.0% | |
| AGTCTCTATTTCAAAGGAGA+AGG | + | chr7.2:6794904-6794923 | MS.gene23013:intron | 35.0% | |
| ATATGAGCAGAAGAAAAGCT+GGG | + | chr7.2:6793567-6793586 | MS.gene23013:intron | 35.0% | |
| ATCAGCATATCTGACGTATT+AGG | - | chr7.2:6796154-6796173 | None:intergenic | 35.0% | |
| CAGAAGATAGATCTTGAATC+TGG | + | chr7.2:6793944-6793963 | MS.gene23013:intron | 35.0% | |
| CCCAAGAAAACAAAGTTACA+CGG | - | chr7.2:6795492-6795511 | None:intergenic | 35.0% | |
| CGATGAAGAAGAATAAAAGG+AGG | + | chr7.2:6793242-6793261 | MS.gene23013:CDS | 35.0% | |
| GATCTTGAATCTGGAAAAAG+AGG | + | chr7.2:6793953-6793972 | MS.gene23013:intron | 35.0% | |
| GCTCATATTTGGGTATGTAA+GGG | - | chr7.2:6793555-6793574 | None:intergenic | 35.0% | |
| GGCGAATAAGTATAGTACTT+TGG | + | chr7.2:6795553-6795572 | MS.gene23013:intron | 35.0% | |
| GTACGCGCTAATGTATTAAT+TGG | - | chr7.2:6794163-6794182 | None:intergenic | 35.0% | |
| GTATCCACTGTTATTGGATT+TGG | - | chr7.2:6793320-6793339 | None:intergenic | 35.0% | |
| TACATTAACCATGTCGGATT+TGG | - | chr7.2:6794554-6794573 | None:intergenic | 35.0% | |
| TATGCTAAAATCGTAGTGAG+GGG | + | chr7.2:6794747-6794766 | MS.gene23013:intron | 35.0% | |
| TCCTGATGATTTAGCTACTT+TGG | + | chr7.2:6795363-6795382 | MS.gene23013:intron | 35.0% | |
| TGAAAGTCATGATGAAAAGG+AGG | + | chr7.2:6793888-6793907 | MS.gene23013:intron | 35.0% | |
| TGCTCATATTTGGGTATGTA+AGG | - | chr7.2:6793556-6793575 | None:intergenic | 35.0% | |
| TGGATTGTATCCACTGTTAT+TGG | - | chr7.2:6793326-6793345 | None:intergenic | 35.0% | |
| TGGTCAAGTCTCTATTTCAA+AGG | + | chr7.2:6794898-6794917 | MS.gene23013:intron | 35.0% | |
| TGTTGGAAGAAAATGAAAGG+AGG | - | chr7.2:6794644-6794663 | None:intergenic | 35.0% | |
| ! | AGCGAAGCACCAATATATTT+AGG | - | chr7.2:6794577-6794596 | None:intergenic | 35.0% |
| ! | AGCGATTTTGTATGAGAAGA+AGG | + | chr7.2:6793915-6793934 | MS.gene23013:intron | 35.0% |
| ! | ATTGTTGCTTCGGCAAATTA+GGG | + | chr7.2:6794710-6794729 | MS.gene23013:intron | 35.0% |
| ! | CCTGATGATTTAGCTACTTT+GGG | + | chr7.2:6795364-6795383 | MS.gene23013:intron | 35.0% |
| ! | CTGATGATTTAGCTACTTTG+GGG | + | chr7.2:6795365-6795384 | MS.gene23013:intron | 35.0% |
| ! | GCTTTTCTTCTGCTCATATT+TGG | - | chr7.2:6793566-6793585 | None:intergenic | 35.0% |
| ! | TATGATTTGGGATGAGAATG+TGG | + | chr7.2:6795867-6795886 | MS.gene23013:intron | 35.0% |
| ! | TCTGTGTTACTCTGTGTTAA+GGG | - | chr7.2:6793691-6793710 | None:intergenic | 35.0% |
| ! | TGATGATTTAGCTACTTTGG+GGG | + | chr7.2:6795366-6795385 | MS.gene23013:intron | 35.0% |
| ! | TTAATATTTTCCTCCTTGCG+AGG | + | chr7.2:6795254-6795273 | MS.gene23013:intron | 35.0% |
| ! | TTTGTTTCTTTGTCCAACGT+CGG | + | chr7.2:6794682-6794701 | MS.gene23013:intron | 35.0% |
| !! | GAAGGATAGTGCTTTTAGTT+TGG | + | chr7.2:6796438-6796457 | MS.gene23013:CDS | 35.0% |
| !! | GTTGGTAATTCTAGTTTCCA+TGG | + | chr7.2:6794604-6794623 | MS.gene23013:intron | 35.0% |
| !! | TAGCGAAAGCATTAAGTGAA+AGG | - | chr7.2:6793294-6793313 | None:intergenic | 35.0% |
| !! | TGTGAATGCTTTTAAAAGCC+AGG | - | chr7.2:6794817-6794836 | None:intergenic | 35.0% |
| !!! | CCGTGTAACTTTGTTTTCTT+GGG | + | chr7.2:6795489-6795508 | MS.gene23013:intron | 35.0% |
| !!! | TCCGTGTAACTTTGTTTTCT+TGG | + | chr7.2:6795488-6795507 | MS.gene23013:intron | 35.0% |
| !!! | TTCTTTTTCAGAGAAGCAGA+GGG | + | chr7.2:6795965-6795984 | MS.gene23013:intron | 35.0% |
| !!! | TTTCTTTTTCAGAGAAGCAG+AGG | + | chr7.2:6795964-6795983 | MS.gene23013:intron | 35.0% |
| AAAGAATGGAAGTAGGCCAT+AGG | + | chr7.2:6794949-6794968 | MS.gene23013:intron | 40.0% | |
| AAATCACGTGAGCTAACTAG+AGG | - | chr7.2:6795603-6795622 | None:intergenic | 40.0% | |
| AACACAAACTCGCCAATCTA+AGG | - | chr7.2:6795314-6795333 | None:intergenic | 40.0% | |
| AACATGCTTCATGCTTCCTA+TGG | - | chr7.2:6794968-6794987 | None:intergenic | 40.0% | |
| AAGAGAGAGAAAGAATGGAG+AGG | + | chr7.2:6796491-6796510 | MS.gene23013:CDS | 40.0% | |
| AAGCAATGACTCTATGACAG+AGG | - | chr7.2:6795432-6795451 | None:intergenic | 40.0% | |
| AAGCCGAGCAACAAATGTTA+AGG | - | chr7.2:6794308-6794327 | None:intergenic | 40.0% | |
| ACAAGGATAAGAATGAGAGG+AGG | + | chr7.2:6796407-6796426 | MS.gene23013:CDS | 40.0% | |
| ACAGTAAATGGGCCTTTGTT+TGG | + | chr7.2:6794053-6794072 | MS.gene23013:intron | 40.0% | |
| ACATAATTCGTGGTTCGCTA+CGG | - | chr7.2:6794278-6794297 | None:intergenic | 40.0% | |
| AGAGAGAGAAAGAATGGAGA+GGG | + | chr7.2:6796492-6796511 | MS.gene23013:CDS | 40.0% | |
| AGCTCGCAGAAAAACTTTAC+GGG | + | chr7.2:6796558-6796577 | MS.gene23013:CDS | 40.0% | |
| AGCTGGGATATTGGATAGAA+TGG | + | chr7.2:6793583-6793602 | MS.gene23013:intron | 40.0% | |
| AGGACAAGGATAAGAATGAG+AGG | + | chr7.2:6796404-6796423 | MS.gene23013:CDS | 40.0% | |
| AGTCTCCCAAAGACATATTG+AGG | + | chr7.2:6796064-6796083 | MS.gene23013:CDS | 40.0% | |
| AGTTACACGGAAACAACACT+AGG | - | chr7.2:6795479-6795498 | None:intergenic | 40.0% | |
| ATAAAAGGAGGAACGTTTCG+AGG | + | chr7.2:6793254-6793273 | MS.gene23013:CDS | 40.0% | |
| ATAAGAATGAGAGGAGGAGA+AGG | + | chr7.2:6796413-6796432 | MS.gene23013:CDS | 40.0% | |
| ATACGGTAACACTCTTAGTG+TGG | + | chr7.2:6794519-6794538 | MS.gene23013:intron | 40.0% | |
| CAAAGGAGAAGGTAGATGTT+GGG | + | chr7.2:6794915-6794934 | MS.gene23013:intron | 40.0% | |
| CACAGAGTAACGTAATTCGT+TGG | + | chr7.2:6793705-6793724 | MS.gene23013:intron | 40.0% | |
| CAGAAGAAAAGCTGGGATAT+TGG | + | chr7.2:6793574-6793593 | MS.gene23013:intron | 40.0% | |
| CCCAAAGTAGCTAAATCATC+AGG | - | chr7.2:6795367-6795386 | None:intergenic | 40.0% | |
| CTGCAATTTAATGCTTGGGT+TGG | + | chr7.2:6793466-6793485 | MS.gene23013:intron | 40.0% | |
| GAAGGGAGTCTAACAAGATA+CGG | + | chr7.2:6794502-6794521 | MS.gene23013:intron | 40.0% | |
| GAATGAAACTGAAGAGGACA+AGG | + | chr7.2:6796390-6796409 | MS.gene23013:CDS | 40.0% | |
| GATAAATACAGCGAATTCGC+TGG | - | chr7.2:6795181-6795200 | None:intergenic | 40.0% | |
| GCATATCTGACGTATTAGGT+AGG | - | chr7.2:6796150-6796169 | None:intergenic | 40.0% | |
| GGAACTTCAGTTAGATATGG+CGG | - | chr7.2:6795894-6795913 | None:intergenic | 40.0% | |
| GGGTTCTTCTTTCCTTAGAT+TGG | + | chr7.2:6795299-6795318 | MS.gene23013:intron | 40.0% | |
| GTTACACGGAAACAACACTA+GGG | - | chr7.2:6795478-6795497 | None:intergenic | 40.0% | |
| TAAAGATTCATGTCCTCGCA+AGG | - | chr7.2:6795270-6795289 | None:intergenic | 40.0% | |
| TACGCATCCTTCAAAGAATC+CGG | - | chr7.2:6794229-6794248 | None:intergenic | 40.0% | |
| TATTTGGTTATGGAGCAGTC+TGG | + | chr7.2:6795404-6795423 | MS.gene23013:intron | 40.0% | |
| TCAAAGGAGAAGGTAGATGT+TGG | + | chr7.2:6794914-6794933 | MS.gene23013:intron | 40.0% | |
| TCAGAATGTTGATCTCTCTG+AGG | + | chr7.2:6796287-6796306 | MS.gene23013:intron | 40.0% | |
| TCAGAGAGATCAACATTCTG+AGG | - | chr7.2:6796288-6796307 | None:intergenic | 40.0% | |
| TGTCTATGGAGAAGCTAACA+AGG | + | chr7.2:6795339-6795358 | MS.gene23013:intron | 40.0% | |
| TGTTACTCTGTGTTAAGGGA+CGG | - | chr7.2:6793687-6793706 | None:intergenic | 40.0% | |
| TTACACGGAAACAACACTAG+GGG | - | chr7.2:6795477-6795496 | None:intergenic | 40.0% | |
| TTTGTATGAGAAGAAGGCAG+AGG | + | chr7.2:6793921-6793940 | MS.gene23013:intron | 40.0% | |
| ! | AATATGTCTTTGGGAGACTG+AGG | - | chr7.2:6796063-6796082 | None:intergenic | 40.0% |
| ! | ACATAGTCGGTACGCTATTT+TGG | - | chr7.2:6794192-6794211 | None:intergenic | 40.0% |
| ! | ATATGTCTTTGGGAGACTGA+GGG | - | chr7.2:6796062-6796081 | None:intergenic | 40.0% |
| ! | CATTGTTGCTTCGGCAAATT+AGG | + | chr7.2:6794709-6794728 | MS.gene23013:intron | 40.0% |
| ! | CTCTGTGTTACTCTGTGTTA+AGG | - | chr7.2:6793692-6793711 | None:intergenic | 40.0% |
| ! | GTCGGTATTCATTGTTGCTT+CGG | + | chr7.2:6794700-6794719 | MS.gene23013:intron | 40.0% |
| ! | GTGCCTTAACATTTGTTGCT+CGG | + | chr7.2:6794302-6794321 | MS.gene23013:intron | 40.0% |
| ! | TTGTGAAAGGGGGTATGATT+AGG | - | chr7.2:6794113-6794132 | None:intergenic | 40.0% |
| !! | ACGTAATTCGTTGGTTCCAT+TGG | + | chr7.2:6793714-6793733 | MS.gene23013:intron | 40.0% |
| !! | CATCTTTTGGAGACTATCCA+AGG | + | chr7.2:6796637-6796656 | MS.gene23013:CDS | 40.0% |
| ACCATGCAGCAACAAATCAG+TGG | + | chr7.2:6794873-6794892 | MS.gene23013:intron | 45.0% | |
| AGGCACAGTCACATAATTCG+TGG | - | chr7.2:6794288-6794307 | None:intergenic | 45.0% | |
| ATTTACTGTCCAGACTCCAG+AGG | - | chr7.2:6794042-6794061 | None:intergenic | 45.0% | |
| CTGGAGTCTGGACAGTAAAT+GGG | + | chr7.2:6794042-6794061 | MS.gene23013:intron | 45.0% | |
| CTTCAAAGAATCCGGTACGT+GGG | - | chr7.2:6794221-6794240 | None:intergenic | 45.0% | |
| GCAACAATGAATACCGACGT+TGG | - | chr7.2:6794698-6794717 | None:intergenic | 45.0% | |
| GCGATCCGTAAGACTCATTT+AGG | + | chr7.2:6794774-6794793 | MS.gene23013:intron | 45.0% | |
| TAGTGAACCCAAATCCGACA+TGG | + | chr7.2:6794543-6794562 | MS.gene23013:intron | 45.0% | |
| TTCAAAGAATCCGGTACGTG+GGG | - | chr7.2:6794220-6794239 | None:intergenic | 45.0% | |
| TTCTGCAACAGCAAGTAGAG+AGG | - | chr7.2:6796367-6796386 | None:intergenic | 45.0% | |
| ! | ATTTGTTGCTAGCTGAGCCT+TGG | - | chr7.2:6796657-6796676 | None:intergenic | 45.0% |
| ! | CAGATTTTCTGCGGATACTC+CGG | - | chr7.2:6793832-6793851 | None:intergenic | 45.0% |
| ! | GCGAATTTTCACGCGAATTC+CGG | - | chr7.2:6793796-6793815 | None:intergenic | 45.0% |
| ! | TCTGGAGTCTGGACAGTAAA+TGG | + | chr7.2:6794041-6794060 | MS.gene23013:intron | 45.0% |
| !! | AGATCAACATTCTGAGGCTC+AGG | - | chr7.2:6796282-6796301 | None:intergenic | 45.0% |
| !! | CTGATTTGTTGCTGCATGGT+AGG | - | chr7.2:6794873-6794892 | None:intergenic | 45.0% |
| !! | TTAAAAAGCACCAAGCACGG+TGG | + | chr7.2:6795103-6795122 | MS.gene23013:intron | 45.0% |
| !!! | AGGTTTTTTCATTGGGCCTC+TGG | + | chr7.2:6794023-6794042 | MS.gene23013:intron | 45.0% |
| !!! | CGGTACGCTATTTTGGTTTG+CGG | - | chr7.2:6794185-6794204 | None:intergenic | 45.0% |
| ACCAATTCGCGGTTCTCCAA+TGG | - | chr7.2:6793733-6793752 | None:intergenic | 50.0% | |
| ACGGCGACGACATTATTACG+TGG | - | chr7.2:6795134-6795153 | None:intergenic | 50.0% | |
| ACGTGAGCTAACTAGAGGCT+AGG | - | chr7.2:6795598-6795617 | None:intergenic | 50.0% | |
| AGACTGAGGGATCATTCTGC+TGG | - | chr7.2:6796049-6796068 | None:intergenic | 50.0% | |
| AGATTCATGTCCTCGCAAGG+AGG | - | chr7.2:6795267-6795286 | None:intergenic | 50.0% | |
| AGGAACGTTTCGAGGTTAGG+TGG | + | chr7.2:6793262-6793281 | MS.gene23013:CDS | 50.0% | |
| AGGAGGAACGTTTCGAGGTT+AGG | + | chr7.2:6793259-6793278 | MS.gene23013:CDS | 50.0% | |
| CCACGTACCGGATTCTTTGA+AGG | + | chr7.2:6794219-6794238 | MS.gene23013:intron | 50.0% | |
| CCTTCAAAGAATCCGGTACG+TGG | - | chr7.2:6794222-6794241 | None:intergenic | 50.0% | |
| CTTCTTCCTCCTAACAGCAG+CGG | - | chr7.2:6793981-6794000 | None:intergenic | 50.0% | |
| GCAGAAAGGGAGAGAGATGT+TGG | - | chr7.2:6794661-6794680 | None:intergenic | 50.0% | |
| GCAGCAACAAATCAGTGGCT+TGG | + | chr7.2:6794878-6794897 | MS.gene23013:intron | 50.0% | |
| GGAGAGGGAAGCAGTATTCA+AGG | + | chr7.2:6796507-6796526 | MS.gene23013:CDS | 50.0% | |
| GTTTCGAGGTTAGGTGGAAG+TGG | + | chr7.2:6793268-6793287 | MS.gene23013:CDS | 50.0% | |
| TATGTATACCCCCCACGTAC+CGG | + | chr7.2:6794207-6794226 | MS.gene23013:intron | 50.0% | |
| TCAAAGAATCCGGTACGTGG+GGG | - | chr7.2:6794219-6794238 | None:intergenic | 50.0% | |
| TCAGTGGTGCACACTTGTCA+TGG | + | chr7.2:6795933-6795952 | MS.gene23013:intron | 50.0% | |
| TCCATTGGAGAACCGCGAAT+TGG | + | chr7.2:6793729-6793748 | MS.gene23013:intron | 50.0% | |
| TGAGAGGAGGAGAAGGAAGA+AGG | + | chr7.2:6796420-6796439 | MS.gene23013:CDS | 50.0% | |
| ! | ACGTGGGGGGTATACATAGT+CGG | - | chr7.2:6794205-6794224 | None:intergenic | 50.0% |
| ! | CGGAGTATCCGCAGAAAATC+TGG | + | chr7.2:6793830-6793849 | MS.gene23013:intron | 50.0% |
| !! | GCCACTGATTTGTTGCTGCA+TGG | - | chr7.2:6794877-6794896 | None:intergenic | 50.0% |
| AAAGAGGAGCCGCTGCTGTT+AGG | + | chr7.2:6793969-6793988 | MS.gene23013:intron | 55.0% | |
| AATTCCGGCGAACCAGTACG+CGG | - | chr7.2:6793781-6793800 | None:intergenic | 55.0% | |
| CAAAGAATCCGGTACGTGGG+GGG | - | chr7.2:6794218-6794237 | None:intergenic | 55.0% | |
| GGTGCTTCGCTAGAGCTTGT+TGG | + | chr7.2:6794586-6794605 | MS.gene23013:intron | 55.0% | |
| GTTCGCTACGGTACGTGGTA+CGG | - | chr7.2:6794266-6794285 | None:intergenic | 55.0% | |
| TACGGTACGTGGTACGGGTT+CGG | - | chr7.2:6794260-6794279 | None:intergenic | 55.0% | |
| TTCGCTACGGTACGTGGTAC+GGG | - | chr7.2:6794265-6794284 | None:intergenic | 55.0% | |
| !! | TACGCGGAAGTACCGCGAAT+CGG | - | chr7.2:6793765-6793784 | None:intergenic | 55.0% |
| !! | TTCATTGGGCCTCTGGAGTC+TGG | + | chr7.2:6794030-6794049 | MS.gene23013:intron | 55.0% |
| ACGGTACGTGGTACGGGTTC+GGG | - | chr7.2:6794259-6794278 | None:intergenic | 60.0% | |
| ATTCGCAGCCGCAAGCGTAC+CGG | + | chr7.2:6793810-6793829 | MS.gene23013:intron | 60.0% | |
| CGGATACTCCGGTACGCTTG+CGG | - | chr7.2:6793821-6793840 | None:intergenic | 60.0% | |
| CGTGGATAGACCACCGTGCT+TGG | - | chr7.2:6795116-6795135 | None:intergenic | 60.0% | |
| GGTTCGCGCGAACCAATTCG+CGG | - | chr7.2:6793744-6793763 | None:intergenic | 60.0% | |
| TCGTGGTTCGCTACGGTACG+TGG | - | chr7.2:6794271-6794290 | None:intergenic | 60.0% | |
| TTCGCGGTACTTCCGCGTAC+TGG | + | chr7.2:6793766-6793785 | MS.gene23013:intron | 60.0% | |
| !! | ACTTCCGCGTACTGGTTCGC+CGG | + | chr7.2:6793774-6793793 | MS.gene23013:intron | 60.0% |
| GAGGAGCCGCTGCTGTTAGG+AGG | + | chr7.2:6793972-6793991 | MS.gene23013:intron | 65.0% | |
| GTGGTACGGGTTCGGGTACG+CGG | - | chr7.2:6794252-6794271 | None:intergenic | 65.0% | |
| !! | GGTTCGCGCGAACCGATTCG+CGG | + | chr7.2:6793750-6793769 | MS.gene23013:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 6793184 | 6796681 | 6793184 | ID=MS.gene23013 |
| chr7.2 | mRNA | 6793184 | 6796681 | 6793184 | ID=MS.gene23013.t1;Parent=MS.gene23013 |
| chr7.2 | exon | 6793184 | 6793355 | 6793184 | ID=MS.gene23013.t1.exon1;Parent=MS.gene23013.t1 |
| chr7.2 | CDS | 6793184 | 6793355 | 6793184 | ID=cds.MS.gene23013.t1;Parent=MS.gene23013.t1 |
| chr7.2 | exon | 6795976 | 6796085 | 6795976 | ID=MS.gene23013.t1.exon2;Parent=MS.gene23013.t1 |
| chr7.2 | CDS | 6795976 | 6796085 | 6795976 | ID=cds.MS.gene23013.t1;Parent=MS.gene23013.t1 |
| chr7.2 | exon | 6796385 | 6796681 | 6796385 | ID=MS.gene23013.t1.exon3;Parent=MS.gene23013.t1 |
| chr7.2 | CDS | 6796385 | 6796681 | 6796385 | ID=cds.MS.gene23013.t1;Parent=MS.gene23013.t1 |
| Gene Sequence |
| Protein sequence |
