Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24483.t1 | XP_003589058.1 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 5.60E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24483.t1 | Q94JX5 | 85.4 | 185 | 26 | 1 | 1 | 185 | 1 | 184 | 3.3e-93 | 342.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24483.t1 | B7FH07 | 99.5 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 4.1e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24483.t1 | TF | LIM |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene24483 | 0.828691 | 7.81E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene24483 | 0.812902 | 3.36E-51 | -1.69E-46 |
| MS.gene051063 | MS.gene24483 | 0.841048 | 6.02E-58 | -1.69E-46 |
| MS.gene051330 | MS.gene24483 | 0.826502 | 2.62E-54 | -1.69E-46 |
| MS.gene051687 | MS.gene24483 | 0.87746 | 6.17E-69 | -1.69E-46 |
| MS.gene051700 | MS.gene24483 | 0.819262 | 1.27E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene24483 | 0.817791 | 2.75E-52 | -1.69E-46 |
| MS.gene051748 | MS.gene24483 | 0.806989 | 6.29E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene24483 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene24483 | 0.841907 | 3.57E-58 | -1.69E-46 |
| MS.gene052133 | MS.gene24483 | 0.805053 | 1.61E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene24483 | 0.826424 | 2.73E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene24483 | 0.823282 | 1.51E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene24483 | 0.806776 | 6.98E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene24483 | 0.837608 | 4.70E-57 | -1.69E-46 |
| MS.gene055424 | MS.gene24483 | 0.836565 | 8.69E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene24483 | 0.809118 | 2.22E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene24483 | 0.801351 | 9.38E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene24483 | -0.829874 | 4.03E-55 | -1.69E-46 |
| MS.gene055591 | MS.gene24483 | -0.807026 | 6.18E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene24483 | -0.849908 | 2.39E-60 | -1.69E-46 |
| MS.gene056075 | MS.gene24483 | 0.814702 | 1.35E-51 | -1.69E-46 |
| MS.gene056091 | MS.gene24483 | 0.805918 | 1.06E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene24483 | 0.810656 | 1.03E-50 | -1.69E-46 |
| MS.gene056830 | MS.gene24483 | -0.811396 | 7.15E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene24483 | 0.815561 | 8.68E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene24483 | 0.804514 | 2.08E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene24483 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene24483 | 0.834288 | 3.27E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene24483 | 0.838333 | 3.06E-57 | -1.69E-46 |
| MS.gene059171 | MS.gene24483 | 0.817999 | 2.46E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene24483 | 0.877416 | 6.40E-69 | -1.69E-46 |
| MS.gene060429 | MS.gene24483 | 0.811449 | 6.96E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24483.t1 | MTR_1g017950 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 4.05e-146 | 404 |
| MS.gene24483.t1 | MTR_4g106800 | 66.857 | 175 | 57 | 1 | 2 | 176 | 3 | 176 | 1.70e-87 | 255 |
| MS.gene24483.t1 | MTR_3g070050 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 3.02e-70 | 212 |
| MS.gene24483.t1 | MTR_8g031490 | 50.820 | 183 | 83 | 3 | 1 | 182 | 1 | 177 | 2.64e-61 | 189 |
| MS.gene24483.t1 | MTR_8g097300 | 54.802 | 177 | 68 | 4 | 1 | 175 | 1 | 167 | 9.79e-61 | 188 |
| MS.gene24483.t1 | MTR_7g076720 | 50.857 | 175 | 82 | 2 | 1 | 175 | 1 | 171 | 3.28e-60 | 187 |
| MS.gene24483.t1 | MTR_3g070050 | 53.731 | 134 | 58 | 2 | 44 | 175 | 2 | 133 | 3.89e-45 | 146 |
| MS.gene24483.t1 | MTR_3g070050 | 47.826 | 69 | 36 | 0 | 3 | 71 | 61 | 129 | 1.42e-18 | 78.6 |
| MS.gene24483.t1 | MTR_1g106100 | 58.559 | 111 | 40 | 2 | 59 | 168 | 20 | 125 | 6.39e-38 | 128 |
| MS.gene24483.t1 | MTR_3g070033 | 66.038 | 53 | 18 | 0 | 123 | 175 | 6 | 58 | 3.58e-18 | 75.5 |
| MS.gene24483.t1 | MTR_3g070033 | 46.939 | 49 | 26 | 0 | 23 | 71 | 6 | 54 | 6.90e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24483.t1 | AT1G10200 | 85.246 | 183 | 27 | 0 | 1 | 183 | 1 | 183 | 2.62e-116 | 328 |
| MS.gene24483.t1 | AT1G10200 | 82.014 | 139 | 25 | 0 | 45 | 183 | 3 | 141 | 2.77e-82 | 241 |
| MS.gene24483.t1 | AT1G10200 | 44.444 | 72 | 40 | 0 | 3 | 74 | 61 | 132 | 2.24e-16 | 72.8 |
| MS.gene24483.t1 | AT2G39900 | 58.192 | 177 | 69 | 2 | 1 | 175 | 1 | 174 | 2.13e-69 | 210 |
| MS.gene24483.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene24483.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene24483.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene24483.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene24483.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene24483.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene24483.t1 | AT3G55770 | 55.307 | 179 | 70 | 2 | 1 | 175 | 1 | 173 | 2.52e-67 | 205 |
| MS.gene24483.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.85e-16 | 73.2 |
| MS.gene24483.t1 | AT2G45800 | 50.000 | 186 | 86 | 2 | 1 | 183 | 1 | 182 | 3.75e-61 | 190 |
| MS.gene24483.t1 | AT1G01780 | 48.649 | 185 | 87 | 3 | 1 | 183 | 1 | 179 | 2.17e-60 | 187 |
| MS.gene24483.t1 | AT3G61230 | 47.917 | 192 | 93 | 3 | 2 | 190 | 3 | 190 | 8.55e-60 | 186 |
| MS.gene24483.t1 | AT3G61230 | 36.792 | 106 | 67 | 0 | 3 | 108 | 100 | 205 | 3.58e-17 | 76.6 |
| MS.gene24483.t1 | AT3G55770 | 46.479 | 213 | 70 | 3 | 1 | 175 | 1 | 207 | 1.60e-59 | 186 |
| MS.gene24483.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 1.44e-15 | 72.8 |
| MS.gene24483.t1 | AT3G55770 | 48.201 | 139 | 61 | 3 | 1 | 135 | 1 | 132 | 2.16e-40 | 134 |
| MS.gene24483.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.56e-17 | 74.3 |
| MS.gene24483.t1 | AT2G45800 | 45.455 | 154 | 76 | 3 | 34 | 184 | 4 | 152 | 4.96e-39 | 132 |
| MS.gene24483.t1 | AT2G45800 | 50.725 | 69 | 34 | 0 | 3 | 71 | 68 | 136 | 1.35e-16 | 74.7 |
| MS.gene24483.t1 | AT3G55770 | 48.462 | 130 | 57 | 2 | 1 | 126 | 1 | 124 | 1.92e-38 | 129 |
| MS.gene24483.t1 | AT3G55770 | 43.678 | 87 | 49 | 0 | 103 | 189 | 3 | 89 | 5.92e-17 | 73.9 |
Find 37 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTATCTATATTTCTTTC+TGG | 0.117591 | 1.1:-4734463 | None:intergenic |
| TCCCTCATGTGCTATGTAAT+TGG | 0.275186 | 1.1:-4735023 | None:intergenic |
| AGCATTTGAAACAACTCTTA+TGG | 0.319973 | 1.1:-4734973 | None:intergenic |
| TTTATAAAGGTTACAGTGAA+TGG | 0.352930 | 1.1:+4734941 | MS.gene24483:intron |
| TTTGCTTGATCAGTTGAATA+TGG | 0.353364 | 1.1:-4735066 | None:intergenic |
| GATCAACTGTTCAAAAGAAC+TGG | 0.398776 | 1.1:+4734299 | MS.gene24483:CDS |
| AGGAAAAGAATGGCATTTGC+AGG | 0.400538 | 1.1:+4733694 | None:intergenic |
| CTTGAGGCTTTAGCTGCTGC+AGG | 0.425078 | 1.1:-4734581 | None:intergenic |
| TATTCAACTGATCAAGCAAA+AGG | 0.432443 | 1.1:+4735069 | MS.gene24483:CDS |
| GCTAAAGCCTCAAGTATGTT+TGG | 0.441559 | 1.1:+4734590 | MS.gene24483:CDS |
| ACACTAATTACCTTCTCTGT+TGG | 0.465114 | 1.1:-4734656 | None:intergenic |
| GGAAATTTGAGCCAGCTTGA+AGG | 0.475377 | 1.1:+4735091 | MS.gene24483:CDS |
| GGAACAAGGGACAAATGTTC+TGG | 0.477611 | 1.1:+4734614 | MS.gene24483:CDS |
| TCTCATGGTCACCTTCAAGC+TGG | 0.480325 | 1.1:-4735102 | None:intergenic |
| CAAGTATGTTTGGTGGAACA+AGG | 0.495604 | 1.1:+4734600 | MS.gene24483:CDS |
| TTGAAACAACTCTTATGGTA+AGG | 0.498185 | 1.1:-4734968 | None:intergenic |
| AGAAAGAAATATAGATAATG+AGG | 0.518674 | 1.1:+4734465 | MS.gene24483:CDS |
| CCTTGAGGGTTCCTTTGCAG+TGG | 0.520760 | 1.1:-4733816 | None:intergenic |
| GAGAGAGACATAGACCTTGA+GGG | 0.525903 | 1.1:-4733830 | None:intergenic |
| GACTAATAGTACACCCTCCA+TGG | 0.536605 | 1.1:-4734997 | None:intergenic |
| AGGAACAACTCAGAAGTGTA+TGG | 0.560932 | 1.1:+4733714 | MS.gene24483:CDS |
| ATTCAACTGATCAAGCAAAA+GGG | 0.562604 | 1.1:+4735070 | MS.gene24483:CDS |
| AGTTGTTTCAAATGCTGCCA+TGG | 0.564010 | 1.1:+4734980 | MS.gene24483:CDS |
| GACATCTGAAACAAGCTTTG+TGG | 0.565667 | 1.1:-4733792 | None:intergenic |
| TTCCAATTACATAGCACATG+AGG | 0.574672 | 1.1:+4735021 | MS.gene24483:CDS |
| TTCAGATGTCACCACTGCAA+AGG | 0.582786 | 1.1:+4733805 | MS.gene24483:CDS |
| GCTTGATCAGTTGAATATGG+TGG | 0.582930 | 1.1:-4735063 | None:intergenic |
| AAAGCCTCAAGTATGTTTGG+TGG | 0.587944 | 1.1:+4734593 | MS.gene24483:CDS |
| GTTTCAAATGCTGCCATGGA+GGG | 0.597804 | 1.1:+4734984 | MS.gene24483:CDS |
| TTGAACAGTTGATCAAAGTG+TGG | 0.606620 | 1.1:-4734290 | None:intergenic |
| TGTTCCACCAAACATACTTG+AGG | 0.606764 | 1.1:-4734597 | None:intergenic |
| AACAGTGTATCCAACAGAGA+AGG | 0.613878 | 1.1:+4734646 | MS.gene24483:CDS |
| TCCAATTACATAGCACATGA+GGG | 0.619052 | 1.1:+4735022 | MS.gene24483:CDS |
| TCATGTGCTATGTAATTGGA+AGG | 0.623562 | 1.1:-4735019 | None:intergenic |
| AAGTATGTTTGGTGGAACAA+GGG | 0.641097 | 1.1:+4734601 | MS.gene24483:CDS |
| CCACTGCAAAGGAACCCTCA+AGG | 0.664342 | 1.1:+4733816 | MS.gene24483:CDS |
| TGTTTCAAATGCTGCCATGG+AGG | 0.668776 | 1.1:+4734983 | MS.gene24483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTCAAAAATAATTTTGTT+CGG | - | chr1.1:4734806-4734825 | None:intergenic | 15.0% |
| !!! | TCAATAATTTGCATTTATAA+AGG | + | chr1.1:4734928-4734947 | MS.gene24483:intron | 15.0% |
| !! | AGAAAGAAATATAGATAATG+AGG | + | chr1.1:4734465-4734484 | MS.gene24483:CDS | 20.0% |
| !! | GTTCATTAACATGAAAATTA+CGG | - | chr1.1:4734132-4734151 | None:intergenic | 20.0% |
| !! | TCATTATCTATATTTCTTTC+TGG | - | chr1.1:4734466-4734485 | None:intergenic | 20.0% |
| ! | AAACAGCTCAAAAAATCATA+TGG | - | chr1.1:4734551-4734570 | None:intergenic | 25.0% |
| ! | AATGAACTTCTTTCATCATT+TGG | + | chr1.1:4734145-4734164 | MS.gene24483:intron | 25.0% |
| ! | AGGTAATGAATTCTAAATCT+AGG | + | chr1.1:4734485-4734504 | MS.gene24483:intron | 25.0% |
| ! | AGGTAATTAGTGTATATGTT+TGG | + | chr1.1:4734666-4734685 | MS.gene24483:intron | 25.0% |
| ! | CATAGCTTAAGTAAAAACTA+TGG | + | chr1.1:4734018-4734037 | MS.gene24483:intron | 25.0% |
| ! | GAAAATTGTTACTGCATATT+TGG | - | chr1.1:4734071-4734090 | None:intergenic | 25.0% |
| ! | TTAGTACATGTTTCAATAGA+CGG | + | chr1.1:4733945-4733964 | MS.gene24483:intron | 25.0% |
| ! | TTTATAAAGGTTACAGTGAA+TGG | + | chr1.1:4734941-4734960 | MS.gene24483:intron | 25.0% |
| !! | AAGCAATTACAATTCTTTTG+AGG | + | chr1.1:4734250-4734269 | MS.gene24483:CDS | 25.0% |
| !! | AGCAATTACAATTCTTTTGA+GGG | + | chr1.1:4734251-4734270 | MS.gene24483:CDS | 25.0% |
| !! | AGTGTATATGTTTGGAATTA+CGG | + | chr1.1:4734674-4734693 | MS.gene24483:intron | 25.0% |
| !!! | AAGTTTTGTATTCAACATCA+GGG | - | chr1.1:4734890-4734909 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTATTCAACATC+AGG | - | chr1.1:4734891-4734910 | None:intergenic | 25.0% |
| !!! | TGTAGCTTTTTCTAAAATCA+TGG | + | chr1.1:4734747-4734766 | MS.gene24483:intron | 25.0% |
| !!! | TTTTGAGTTTGTGATTAGTT+TGG | + | chr1.1:4734817-4734836 | MS.gene24483:intron | 25.0% |
| AAAAATGCTGGGAAAATCAA+TGG | + | chr1.1:4735124-4735143 | MS.gene24483:CDS | 30.0% | |
| ACCAAAAAGAAATGTCTAAG+AGG | - | chr1.1:4733860-4733879 | None:intergenic | 30.0% | |
| ATTCAACTGATCAAGCAAAA+GGG | + | chr1.1:4735070-4735089 | MS.gene24483:CDS | 30.0% | |
| CATTAACATGAAAATTACGG+TGG | - | chr1.1:4734129-4734148 | None:intergenic | 30.0% | |
| TATTCAACTGATCAAGCAAA+AGG | + | chr1.1:4735069-4735088 | MS.gene24483:CDS | 30.0% | |
| TGAAAATGCTTATGAACAAC+TGG | - | chr1.1:4734099-4734118 | None:intergenic | 30.0% | |
| TTACTGCATATTTGGATTCA+CGG | - | chr1.1:4734063-4734082 | None:intergenic | 30.0% | |
| TTGAAACAACTCTTATGGTA+AGG | - | chr1.1:4734971-4734990 | None:intergenic | 30.0% | |
| TTTGCTTGATCAGTTGAATA+TGG | - | chr1.1:4735069-4735088 | None:intergenic | 30.0% | |
| ! | ACCTCTTAGACATTTCTTTT+TGG | + | chr1.1:4733856-4733875 | MS.gene24483:intron | 30.0% |
| ! | AGCATTTGAAACAACTCTTA+TGG | - | chr1.1:4734976-4734995 | None:intergenic | 30.0% |
| ! | TTCTTTCATCATTTGGCTTA+TGG | + | chr1.1:4734152-4734171 | MS.gene24483:intron | 30.0% |
| !! | AAAGCTTTGAAGGTAAACAA+AGG | + | chr1.1:4734333-4734352 | MS.gene24483:intron | 30.0% |
| !!! | ACTTTTGTTTTGCATACCTA+GGG | + | chr1.1:4734422-4734441 | MS.gene24483:intron | 30.0% |
| !!! | AGCTTTTTCTAAAATCATGG+TGG | + | chr1.1:4734750-4734769 | MS.gene24483:intron | 30.0% |
| !!! | CTTTCTGGTTTGACAATTTT+TGG | - | chr1.1:4734451-4734470 | None:intergenic | 30.0% |
| !!! | TACCTTCAAAGCTTTTTTCA+AGG | - | chr1.1:4734328-4734347 | None:intergenic | 30.0% |
| !!! | TACTTTTGTTTTGCATACCT+AGG | + | chr1.1:4734421-4734440 | MS.gene24483:intron | 30.0% |
| ACACTAATTACCTTCTCTGT+TGG | - | chr1.1:4734659-4734678 | None:intergenic | 35.0% | |
| CTAACAGATCCAATACTAGA+AGG | - | chr1.1:4733908-4733927 | None:intergenic | 35.0% | |
| GATCAACTGTTCAAAAGAAC+TGG | + | chr1.1:4734299-4734318 | MS.gene24483:CDS | 35.0% | |
| TCATGTGCTATGTAATTGGA+AGG | - | chr1.1:4735022-4735041 | None:intergenic | 35.0% | |
| TCCAATTACATAGCACATGA+GGG | + | chr1.1:4735022-4735041 | MS.gene24483:CDS | 35.0% | |
| TTCCAATTACATAGCACATG+AGG | + | chr1.1:4735021-4735040 | MS.gene24483:CDS | 35.0% | |
| TTGAACAGTTGATCAAAGTG+TGG | - | chr1.1:4734293-4734312 | None:intergenic | 35.0% | |
| ! | AAGTATGTTTGGTGGAACAA+GGG | + | chr1.1:4734601-4734620 | MS.gene24483:CDS | 35.0% |
| ! | AGCCTTGAAAAAAGCTTTGA+AGG | + | chr1.1:4734323-4734342 | MS.gene24483:CDS | 35.0% |
| ! | CTAGTTTAGCCTTCTAGTAT+TGG | + | chr1.1:4733896-4733915 | MS.gene24483:intron | 35.0% |
| ! | TTTCATCATTTGGCTTATGG+AGG | + | chr1.1:4734155-4734174 | MS.gene24483:intron | 35.0% |
| ! | TTTTCCCAGCATTTTTCTCA+TGG | - | chr1.1:4735120-4735139 | None:intergenic | 35.0% |
| !! | CGGCTAGTTTAACAATATCA+CGG | + | chr1.1:4734694-4734713 | MS.gene24483:intron | 35.0% |
| AAAGCCTCAAGTATGTTTGG+TGG | + | chr1.1:4734593-4734612 | MS.gene24483:CDS | 40.0% | |
| AACAGTGTATCCAACAGAGA+AGG | + | chr1.1:4734646-4734665 | MS.gene24483:CDS | 40.0% | |
| GCTAAAGCCTCAAGTATGTT+TGG | + | chr1.1:4734590-4734609 | MS.gene24483:CDS | 40.0% | |
| GCTTGATCAGTTGAATATGG+TGG | - | chr1.1:4735066-4735085 | None:intergenic | 40.0% | |
| GTGACCATGAGAAAAATGCT+GGG | + | chr1.1:4735113-4735132 | MS.gene24483:CDS | 40.0% | |
| GTTCGGATTTGTGATGAGTT+TGG | - | chr1.1:4734789-4734808 | None:intergenic | 40.0% | |
| TCCCTCATGTGCTATGTAAT+TGG | - | chr1.1:4735026-4735045 | None:intergenic | 40.0% | |
| TGCAACTTTCGCCAAAATCA+CGG | - | chr1.1:4734861-4734880 | None:intergenic | 40.0% | |
| TGTTCCACCAAACATACTTG+AGG | - | chr1.1:4734600-4734619 | None:intergenic | 40.0% | |
| ! | AGGAACAACTCAGAAGTGTA+TGG | + | chr1.1:4733714-4733733 | MS.gene24483:CDS | 40.0% |
| ! | AGTTGTTTCAAATGCTGCCA+TGG | + | chr1.1:4734980-4734999 | MS.gene24483:CDS | 40.0% |
| ! | CAAGTATGTTTGGTGGAACA+AGG | + | chr1.1:4734600-4734619 | MS.gene24483:CDS | 40.0% |
| ! | GACATCTGAAACAAGCTTTG+TGG | - | chr1.1:4733795-4733814 | None:intergenic | 40.0% |
| !!! | TGACAATTTTTGGTGTCCCT+AGG | - | chr1.1:4734441-4734460 | None:intergenic | 40.0% |
| GACTAATAGTACACCCTCCA+TGG | - | chr1.1:4735000-4735019 | None:intergenic | 45.0% | |
| GAGAGAGACATAGACCTTGA+GGG | - | chr1.1:4733833-4733852 | None:intergenic | 45.0% | |
| GATGAGTTTGGCAGAATCTG+TGG | - | chr1.1:4734777-4734796 | None:intergenic | 45.0% | |
| GGAAATTTGAGCCAGCTTGA+AGG | + | chr1.1:4735091-4735110 | MS.gene24483:CDS | 45.0% | |
| GGAACAAGGGACAAATGTTC+TGG | + | chr1.1:4734614-4734633 | MS.gene24483:CDS | 45.0% | |
| GGTGACCATGAGAAAAATGC+TGG | + | chr1.1:4735112-4735131 | MS.gene24483:CDS | 45.0% | |
| GTTTCAAATGCTGCCATGGA+GGG | + | chr1.1:4734984-4735003 | MS.gene24483:CDS | 45.0% | |
| TGAGAGAGACATAGACCTTG+AGG | - | chr1.1:4733834-4733853 | None:intergenic | 45.0% | |
| TGTTTCAAATGCTGCCATGG+AGG | + | chr1.1:4734983-4735002 | MS.gene24483:CDS | 45.0% | |
| TTCAGATGTCACCACTGCAA+AGG | + | chr1.1:4733805-4733824 | MS.gene24483:CDS | 45.0% | |
| ! | TCATTGTGCGACCGTGATTT+TGG | + | chr1.1:4734847-4734866 | MS.gene24483:intron | 45.0% |
| TCTCATGGTCACCTTCAAGC+TGG | - | chr1.1:4735105-4735124 | None:intergenic | 50.0% | |
| CCACTGCAAAGGAACCCTCA+AGG | + | chr1.1:4733816-4733835 | MS.gene24483:CDS | 55.0% | |
| CCTTGAGGGTTCCTTTGCAG+TGG | - | chr1.1:4733819-4733838 | None:intergenic | 55.0% | |
| ! | CTTGAGGCTTTAGCTGCTGC+AGG | - | chr1.1:4734584-4734603 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4733703 | 4735171 | 4733703 | ID=MS.gene24483 |
| chr1.1 | mRNA | 4733703 | 4735171 | 4733703 | ID=MS.gene24483.t1;Parent=MS.gene24483 |
| chr1.1 | exon | 4733703 | 4733837 | 4733703 | ID=MS.gene24483.t1.exon1;Parent=MS.gene24483.t1 |
| chr1.1 | CDS | 4733703 | 4733837 | 4733703 | ID=cds.MS.gene24483.t1;Parent=MS.gene24483.t1 |
| chr1.1 | exon | 4734248 | 4734344 | 4734248 | ID=MS.gene24483.t1.exon2;Parent=MS.gene24483.t1 |
| chr1.1 | CDS | 4734248 | 4734344 | 4734248 | ID=cds.MS.gene24483.t1;Parent=MS.gene24483.t1 |
| chr1.1 | exon | 4734443 | 4734486 | 4734443 | ID=MS.gene24483.t1.exon3;Parent=MS.gene24483.t1 |
| chr1.1 | CDS | 4734443 | 4734486 | 4734443 | ID=cds.MS.gene24483.t1;Parent=MS.gene24483.t1 |
| chr1.1 | exon | 4734578 | 4734667 | 4734578 | ID=MS.gene24483.t1.exon4;Parent=MS.gene24483.t1 |
| chr1.1 | CDS | 4734578 | 4734667 | 4734578 | ID=cds.MS.gene24483.t1;Parent=MS.gene24483.t1 |
| chr1.1 | exon | 4734950 | 4735171 | 4734950 | ID=MS.gene24483.t1.exon5;Parent=MS.gene24483.t1 |
| chr1.1 | CDS | 4734950 | 4735171 | 4734950 | ID=cds.MS.gene24483.t1;Parent=MS.gene24483.t1 |
| Gene Sequence |
| Protein sequence |
