AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25923


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25923.t1 MTR_3g078370 96.914 324 9 1 1 323 82 405 0.0 627
MS.gene25923.t1 MTR_1g021760 47.656 128 58 4 201 323 82 205 9.10e-21 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25923.t1 AT3G49080 63.356 292 92 5 42 323 144 430 8.97e-114 336
MS.gene25923.t1 AT1G74970 46.154 130 57 4 201 323 85 208 2.80e-23 95.9

Find 88 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTGGTAACGGTAAATTTA+TGG 0.138790 3.2:+69248257 MS.gene25923:CDS
GAAGAGGATGCTTTGTTTAA+AGG 0.164710 3.2:+69247487 MS.gene25923:CDS
GTGAAAGGTGGTGGTGTTTC+AGG 0.217283 3.2:+69248390 MS.gene25923:CDS
GGTGACTTGATTGCTGCTTC+TGG 0.228441 3.2:+69247988 MS.gene25923:CDS
TTTCTTGCTTTGGCCTTTCC+AGG 0.232502 3.2:-69250394 None:intergenic
GATGGTGAAAGTGGTGATTT+TGG 0.309890 3.2:+69247535 MS.gene25923:CDS
CTAAGTGCAGGCCGCAAATC+TGG 0.366420 3.2:-69250184 None:intergenic
AAAATGGTGGTTAGAAGAAA+AGG 0.368505 3.2:+69247450 MS.gene25923:CDS
AGACTAAGACATTGGGGCTC+TGG 0.370218 3.2:+69248352 MS.gene25923:CDS
AGTGAGACAAGTAGATGATA+AGG 0.379415 3.2:+69248179 MS.gene25923:CDS
AAAGATCTTAAAGATGTTGA+TGG 0.382922 3.2:+69248048 MS.gene25923:CDS
TTCTCTGAGACTAAGACATT+GGG 0.395628 3.2:+69248345 MS.gene25923:CDS
AGAGGATGATGATGTGAGTA+AGG 0.404212 3.2:+69247639 MS.gene25923:CDS
CAAATCCACCAGAGGTGAAA+TGG 0.404466 3.2:+69248122 MS.gene25923:CDS
TGAAACACCACCACCTTTCA+CGG 0.413786 3.2:-69248388 None:intergenic
TGGAATTTGAAAGAGGATAC+TGG 0.418798 3.2:+69247598 MS.gene25923:CDS
TTTGTTTAAAGGAATTGATA+AGG 0.420765 3.2:+69247498 MS.gene25923:CDS
TAGTCTCAGAGAAAGGTCTA+AGG 0.428550 3.2:-69248335 None:intergenic
TAGCAGGGCTTTGCAAAGTT+GGG 0.438793 3.2:+69250159 MS.gene25923:CDS
GCAAGTTGGAGCTATACGTT+TGG 0.439544 3.2:+69250132 MS.gene25923:CDS
ATGCGCTATGAGAGGAATAC+TGG 0.445921 3.2:+69248099 MS.gene25923:CDS
GACTAAGACATTGGGGCTCT+GGG 0.446729 3.2:+69248353 MS.gene25923:CDS
TAGACGCTCCATTTCACCTC+TGG 0.447888 3.2:-69248130 None:intergenic
TTAGCAGGGCTTTGCAAAGT+TGG 0.453242 3.2:+69250158 MS.gene25923:CDS
GTGAAGGAGGGGAGAGAGTG+AGG 0.453262 3.2:+69247407 MS.gene25923:CDS
AAGGGACGTGCCTATGGAAC+CGG 0.462628 3.2:+69248198 MS.gene25923:CDS
GGGATGAATGAAGGTGAAGG+AGG 0.464929 3.2:+69247394 None:intergenic
GTGAGACAAGTAGATGATAA+GGG 0.465382 3.2:+69248180 MS.gene25923:CDS
AGGAGGGGAGAGAGTGAGGA+AGG 0.465845 3.2:+69247411 MS.gene25923:CDS
CTATACGTTTGGGTATTAGC+AGG 0.467402 3.2:+69250143 MS.gene25923:CDS
TTTCTCTGAGACTAAGACAT+TGG 0.467627 3.2:+69248344 MS.gene25923:CDS
TATCTGCTCCAACACCAATA+TGG 0.469968 3.2:-69247561 None:intergenic
CAAGTTGGAGCTATACGTTT+GGG 0.473428 3.2:+69250133 MS.gene25923:CDS
ACCATAAATTTACCGTTACC+AGG 0.475003 3.2:-69248258 None:intergenic
GGATGAATGAAGGTGAAGGA+GGG 0.475747 3.2:+69247395 None:intergenic
GATGATAAGGGACGTGCCTA+TGG 0.478544 3.2:+69248192 MS.gene25923:CDS
ACTGCAGGAACGAAAGCTTT+TGG 0.489898 3.2:+69247967 MS.gene25923:intron
TTTGGTGACCATATTGGTGT+TGG 0.496594 3.2:+69247553 MS.gene25923:CDS
ACGCTCCATTTCACCTCTGG+TGG 0.497185 3.2:-69248127 None:intergenic
CTACTCTTGAATCCCTCGTC+AGG 0.500706 3.2:-69250357 None:intergenic
CAGATAATGTTGATGAACCT+TGG 0.500891 3.2:+69247578 MS.gene25923:CDS
AAATGGTGGTTAGAAGAAAA+GGG 0.502327 3.2:+69247451 MS.gene25923:CDS
GCGTCTAAAGCAAGAGGAAG+CGG 0.519797 3.2:+69248146 MS.gene25923:CDS
TGAACCTTGGAATTTGAAAG+AGG 0.523153 3.2:+69247591 MS.gene25923:CDS
GGGATTCAAGAGTAGTAGAA+AGG 0.524223 3.2:+69250365 MS.gene25923:CDS
GTATCCTCTTTCAAATTCCA+AGG 0.528823 3.2:-69247595 None:intergenic
TTCATACCACTTCTAAGTGC+AGG 0.531151 3.2:-69250196 None:intergenic
TTCTGAACTTCCTCTTGACT+CGG 0.532049 3.2:-69247694 None:intergenic
TTCATGACAATAGGGCAAGT+TGG 0.534750 3.2:+69250118 MS.gene25923:intron
AAGGAAACTGAGGTTAAAGA+TGG 0.540127 3.2:+69247517 MS.gene25923:CDS
TTCTCTATTTCACTAAGAGG+TGG 0.550263 3.2:-69248075 None:intergenic
GAGCTCATTGCTGTTCTCGA+AGG 0.551281 3.2:+69247736 MS.gene25923:CDS
AGTAGCACGATGATCGAGCA+TGG 0.555558 3.2:-69248310 None:intergenic
AATGTCTTAGTCTCAGAGAA+AGG 0.565528 3.2:-69248342 None:intergenic
TATACGTTTGGGTATTAGCA+GGG 0.565628 3.2:+69250144 MS.gene25923:CDS
GGGTATTGATAATGAAGAAG+AGG 0.566295 3.2:+69247471 MS.gene25923:CDS
GCACGTGTGTGGGTTCAGCC+TGG 0.568099 3.2:+69248240 MS.gene25923:CDS
TGGTGAGCTTAATGTTGTCG+AGG 0.568877 3.2:+69247669 MS.gene25923:CDS
GGATGATGATGTGAGTAAGG+AGG 0.571155 3.2:+69247642 MS.gene25923:CDS
GATCAGTCGGCTTCCTGACG+AGG 0.573961 3.2:+69250344 MS.gene25923:intron
GTAGCACGATGATCGAGCAT+GGG 0.575752 3.2:-69248309 None:intergenic
GATGAATGAAGGTGAAGGAG+GGG 0.576275 3.2:+69247396 None:intergenic
AATCTTGATGGGATGAATGA+AGG 0.577942 3.2:+69247385 None:intergenic
GTGTGGGTTCAGCCTGGTAA+CGG 0.579940 3.2:+69248246 MS.gene25923:CDS
AGGAATTGATAAGGAAACTG+AGG 0.581256 3.2:+69247507 MS.gene25923:CDS
TTGCGGCCTGCACTTAGAAG+TGG 0.583652 3.2:+69250190 MS.gene25923:CDS
GAGGTTAAAGATGGTGAAAG+TGG 0.584687 3.2:+69247526 MS.gene25923:CDS
AATGCAGTATAGCACGTGTG+TGG 0.584778 3.2:+69248229 MS.gene25923:CDS
AAGATCTTAAAGATGTTGAT+GGG 0.585151 3.2:+69248049 MS.gene25923:CDS
AATTGTACCGTGAAAGGTGG+TGG 0.586653 3.2:+69248381 MS.gene25923:CDS
AAAGTTGGGAACCAGATTTG+CGG 0.586970 3.2:+69250173 MS.gene25923:CDS
TGATGATGTGAGTAAGGAGG+AGG 0.588163 3.2:+69247645 MS.gene25923:CDS
GGTGAGCTTAATGTTGTCGA+GGG 0.589292 3.2:+69247670 MS.gene25923:CDS
ATCAGTCGGCTTCCTGACGA+GGG 0.589864 3.2:+69250345 MS.gene25923:intron
GGAAGTTCAGAAGCTTGAGA+AGG 0.603977 3.2:+69247705 MS.gene25923:CDS
TAGAGAAAATGCGCTATGAG+AGG 0.604354 3.2:+69248091 MS.gene25923:CDS
ATGCAGTATAGCACGTGTGT+GGG 0.611437 3.2:+69248230 MS.gene25923:CDS
GATGTTAATTGTACCGTGAA+AGG 0.611552 3.2:+69248375 MS.gene25923:CDS
CAAACTCTCAAGCATTTCGT+CGG 0.631465 3.2:-69248016 None:intergenic
TAGCACGATGATCGAGCATG+GGG 0.649555 3.2:-69248308 None:intergenic
GATGTGAGTAAGGAGGAGGT+TGG 0.653294 3.2:+69247649 MS.gene25923:CDS
TGTCGAGGGTCCGAGTCAAG+AGG 0.658139 3.2:+69247684 MS.gene25923:CDS
TCTCTGAGACTAAGACATTG+GGG 0.658850 3.2:+69248346 MS.gene25923:CDS
AATGGAGCGTCTAAAGCAAG+AGG 0.669910 3.2:+69248140 MS.gene25923:CDS
GATGGGATGAATGAAGGTGA+AGG 0.675149 3.2:+69247391 None:intergenic
GTTAATTGTACCGTGAAAGG+TGG 0.683961 3.2:+69248378 MS.gene25923:CDS
GACGTGCCTATGGAACCGGA+AGG 0.727860 3.2:+69248202 MS.gene25923:CDS
AATACTGGCAAATCCACCAG+AGG 0.729786 3.2:+69248114 MS.gene25923:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTTATTAAGCATTTATA+TGG + chr3.2:69249140-69249159 MS.gene25923:intron 15.0%
!!! ACATTTTTTGGTTTTATTTA+GGG + chr3.2:69249873-69249892 MS.gene25923:intron 15.0%
!!! TTCATTTTTAAAATAAAAGC+AGG - chr3.2:69249590-69249609 None:intergenic 15.0%
!! AATAAAACCAAAAAATGTCA+AGG - chr3.2:69249871-69249890 None:intergenic 20.0%
!! AGATAAAGGAAATGAATAAT+AGG - chr3.2:69249484-69249503 None:intergenic 20.0%
!! ATGAAAAATGAAAGAGATAA+AGG - chr3.2:69249498-69249517 None:intergenic 20.0%
!! CATAAAATCTAAATGAAAAC+AGG - chr3.2:69249359-69249378 None:intergenic 20.0%
!! TAAAACGATTAAAGTAAATG+AGG + chr3.2:69249614-69249633 MS.gene25923:intron 20.0%
!! TAAAAGACTAACATGAAAAA+AGG - chr3.2:69250258-69250277 None:intergenic 20.0%
!! TAGAAATTTATGCTAATGAT+AGG - chr3.2:69248473-69248492 None:intergenic 20.0%
!! TTTAAATGTCAAAATTAGAG+AGG - chr3.2:69249912-69249931 None:intergenic 20.0%
!! TTTCTTTATTGTTTGATTGT+TGG - chr3.2:69249984-69250003 None:intergenic 20.0%
!! TTTGTTTAAAGGAATTGATA+AGG + chr3.2:69247498-69247517 MS.gene25923:CDS 20.0%
!!! GACATTTTTTGGTTTTATTT+AGG + chr3.2:69249872-69249891 MS.gene25923:intron 20.0%
!!! TATCTCTTTCATTTTTCATA+TGG + chr3.2:69249499-69249518 MS.gene25923:intron 20.0%
!!! TCTAAAACTAGTTTTTTTGT+TGG - chr3.2:69249223-69249242 None:intergenic 20.0%
!!! TTAATTTCCTTGACATTTTT+TGG + chr3.2:69249861-69249880 MS.gene25923:intron 20.0%
!!! TTTTGTACTAAATAGTGTAT+TGG + chr3.2:69248647-69248666 MS.gene25923:intron 20.0%
! AAAAATGAAAGTTCAGCATA+TGG - chr3.2:69249407-69249426 None:intergenic 25.0%
! AAAGATCTTAAAGATGTTGA+TGG + chr3.2:69248048-69248067 MS.gene25923:CDS 25.0%
! AAATACAGGTTTCATTAGTT+CGG - chr3.2:69249650-69249669 None:intergenic 25.0%
! AACTAACAAGTAACAACAAA+AGG - chr3.2:69247775-69247794 None:intergenic 25.0%
! AAGATCTTAAAGATGTTGAT+GGG + chr3.2:69248049-69248068 MS.gene25923:CDS 25.0%
! ACTAACAAGTAACAACAAAA+GGG - chr3.2:69247774-69247793 None:intergenic 25.0%
! ATTCAAATTATGCTACGTTA+TGG + chr3.2:69248686-69248705 MS.gene25923:intron 25.0%
! CATGTAAATGCAAGATATAA+GGG + chr3.2:69249745-69249764 MS.gene25923:intron 25.0%
! GTTGAATATAAGTGTGTATT+TGG - chr3.2:69249956-69249975 None:intergenic 25.0%
! GTTGATTAAGATAATACGAA+GGG - chr3.2:69250089-69250108 None:intergenic 25.0%
! TACAAAACATTGTCAAATTG+CGG - chr3.2:69248634-69248653 None:intergenic 25.0%
! TGAAAAATATGAACTCTACA+AGG + chr3.2:69249828-69249847 MS.gene25923:intron 25.0%
!! AAGCAAGAAAAAGTTTTCAA+TGG + chr3.2:69250407-69250426 MS.gene25923:CDS 25.0%
!! AGCAAGAAAAAGTTTTCAAT+GGG + chr3.2:69250408-69250427 MS.gene25923:CDS 25.0%
!! ATTTTCTCTATTTCACTAAG+AGG - chr3.2:69248081-69248100 None:intergenic 25.0%
!! TAAACCAGTGTTGTTAAATA+GGG - chr3.2:69248724-69248743 None:intergenic 25.0%
!! TACTTTGGTAATTTGAGTTT+GGG + chr3.2:69248527-69248546 MS.gene25923:intron 25.0%
!!! AAGTTGATGATGAACAAAAA+TGG + chr3.2:69247434-69247453 MS.gene25923:CDS 25.0%
!!! AGCTTTCTTTTATTTTGATC+AGG + chr3.2:69249713-69249732 MS.gene25923:intron 25.0%
!!! AGTACAGTTTTTAAGAACTA+AGG + chr3.2:69249308-69249327 MS.gene25923:intron 25.0%
!!! TATTTAACAACACTGGTTTA+GGG + chr3.2:69248724-69248743 MS.gene25923:intron 25.0%
!!! TTAGTTTTAGACATTGTTGA+AGG + chr3.2:69247797-69247816 MS.gene25923:intron 25.0%
!!! TTGAAAACTTTTTCTTGCTT+TGG - chr3.2:69250407-69250426 None:intergenic 25.0%
AAAATGGTGGTTAGAAGAAA+AGG + chr3.2:69247450-69247469 MS.gene25923:CDS 30.0%
AAACCTGTTTCATGACAATA+GGG + chr3.2:69250110-69250129 MS.gene25923:intron 30.0%
AAATGGTGGTTAGAAGAAAA+GGG + chr3.2:69247451-69247470 MS.gene25923:CDS 30.0%
AATAAGAAAAACAGAGGAGA+TGG + chr3.2:69249048-69249067 MS.gene25923:intron 30.0%
AATTATTCACGACCAATGTA+TGG - chr3.2:69249435-69249454 None:intergenic 30.0%
ACACAGTTCTTCAAAGTAAA+CGG - chr3.2:69249336-69249355 None:intergenic 30.0%
ATAAGAAAAACAGAGGAGAT+GGG + chr3.2:69249049-69249068 MS.gene25923:intron 30.0%
ATACGAAGGGAAAAATGAAT+TGG - chr3.2:69250076-69250095 None:intergenic 30.0%
ATGAAACTGAATTGTTGTCA+AGG + chr3.2:69247914-69247933 MS.gene25923:intron 30.0%
ATTATTCACGACCAATGTAT+GGG - chr3.2:69249434-69249453 None:intergenic 30.0%
ATTCATGAATCATATCGCAA+AGG - chr3.2:69249689-69249708 None:intergenic 30.0%
ATTTGAACGTGAATGTTGAA+TGG + chr3.2:69247865-69247884 MS.gene25923:intron 30.0%
CAAACTCAAATTACCAAAGT+AGG - chr3.2:69248528-69248547 None:intergenic 30.0%
CAAGTATTTGCTTAAGAGAT+TGG + chr3.2:69248958-69248977 MS.gene25923:intron 30.0%
CCAATGAATAAGAAAAACAG+AGG + chr3.2:69249042-69249061 MS.gene25923:intron 30.0%
CTAACAAGTAACAACAAAAG+GGG - chr3.2:69247773-69247792 None:intergenic 30.0%
CTTTATTGTTTGATTGTTGG+TGG - chr3.2:69249981-69250000 None:intergenic 30.0%
GCATGTAAATGCAAGATATA+AGG + chr3.2:69249744-69249763 MS.gene25923:intron 30.0%
GGGAGAAAATATTTATGAAC+TGG + chr3.2:69249765-69249784 MS.gene25923:intron 30.0%
TAATGATAGGATAGAACTTC+AGG - chr3.2:69248460-69248479 None:intergenic 30.0%
TTGTTAAATAGGGGTTATAG+CGG - chr3.2:69248714-69248733 None:intergenic 30.0%
TTTAGACATTGTTGAAGGTT+TGG + chr3.2:69247802-69247821 MS.gene25923:intron 30.0%
! AAACCAGTGTTGTTAAATAG+GGG - chr3.2:69248723-69248742 None:intergenic 30.0%
! ACTTTGGTAATTTGAGTTTG+GGG + chr3.2:69248528-69248547 MS.gene25923:intron 30.0%
! ATTTTGTACTGTATCATGCA+CGG - chr3.2:69248820-69248839 None:intergenic 30.0%
! CGTTGATTAAGATAATACGA+AGG - chr3.2:69250090-69250109 None:intergenic 30.0%
! CTAAACCAGTGTTGTTAAAT+AGG - chr3.2:69248725-69248744 None:intergenic 30.0%
! CTACTTTGGTAATTTGAGTT+TGG + chr3.2:69248526-69248545 MS.gene25923:intron 30.0%
!! CCTCTGTTTTTCTTATTCAT+TGG - chr3.2:69249045-69249064 None:intergenic 30.0%
!! CTATTTAACAACACTGGTTT+AGG + chr3.2:69248723-69248742 MS.gene25923:intron 30.0%
!! TTGATGATGAACAAAAATGG+TGG + chr3.2:69247437-69247456 MS.gene25923:CDS 30.0%
!!! CATTTTTTTACCCCATACAT+TGG + chr3.2:69249420-69249439 MS.gene25923:intron 30.0%
!!! TCATGTTAGTCTTTTACTTG+TGG + chr3.2:69250262-69250281 MS.gene25923:intron 30.0%
!!! TGATGTTTTTGGTTTCAAAG+AGG + chr3.2:69247621-69247640 MS.gene25923:CDS 30.0%
AAAAGACCAAGAGATGCATT+TGG - chr3.2:69249256-69249275 None:intergenic 35.0%
AAGGAAACTGAGGTTAAAGA+TGG + chr3.2:69247517-69247536 MS.gene25923:CDS 35.0%
AATGAAAGTTCAGCATATGG+TGG - chr3.2:69249404-69249423 None:intergenic 35.0%
AATGATCCAAATGCATCTCT+TGG + chr3.2:69249247-69249266 MS.gene25923:intron 35.0%
AATGTCTTAGTCTCAGAGAA+AGG - chr3.2:69248345-69248364 None:intergenic 35.0%
ACATTGGTCGTGAATAATTG+TGG + chr3.2:69249436-69249455 MS.gene25923:intron 35.0%
ACCATAAATTTACCGTTACC+AGG - chr3.2:69248261-69248280 None:intergenic 35.0%
AGAAAGGAAAAAACCTGGAA+AGG + chr3.2:69250381-69250400 MS.gene25923:CDS 35.0%
AGGAATTGATAAGGAAACTG+AGG + chr3.2:69247507-69247526 MS.gene25923:CDS 35.0%
AGTGAGACAAGTAGATGATA+AGG + chr3.2:69248179-69248198 MS.gene25923:CDS 35.0%
CACAGTTCTTCAAAGTAAAC+GGG - chr3.2:69249335-69249354 None:intergenic 35.0%
CATGCATGTTTGACACTTAA+AGG + chr3.2:69248842-69248861 MS.gene25923:intron 35.0%
CGTGAATAATTGTGGTAGTT+TGG + chr3.2:69249444-69249463 MS.gene25923:intron 35.0%
GAAACCTGTTTCATGACAAT+AGG + chr3.2:69250109-69250128 MS.gene25923:intron 35.0%
GAATGTTGAATGGAATCGAA+AGG + chr3.2:69247875-69247894 MS.gene25923:intron 35.0%
GATGTTAATTGTACCGTGAA+AGG + chr3.2:69248375-69248394 MS.gene25923:CDS 35.0%
GGGTTATAGTTAGAGACTAT+AGG + chr3.2:69249077-69249096 MS.gene25923:intron 35.0%
GTAGTAGAAAGGAAAAAACC+TGG + chr3.2:69250376-69250395 MS.gene25923:CDS 35.0%
GTATCCTCTTTCAAATTCCA+AGG - chr3.2:69247598-69247617 None:intergenic 35.0%
GTGAGACAAGTAGATGATAA+GGG + chr3.2:69248180-69248199 MS.gene25923:CDS 35.0%
GTGCATGATACAGTACAAAA+TGG + chr3.2:69248819-69248838 MS.gene25923:intron 35.0%
TAACCCCTATTTAACAACAC+TGG + chr3.2:69248717-69248736 MS.gene25923:intron 35.0%
TAAGAAAAACAGAGGAGATG+GGG + chr3.2:69249050-69249069 MS.gene25923:intron 35.0%
TATACGTTTGGGTATTAGCA+GGG + chr3.2:69250144-69250163 MS.gene25923:CDS 35.0%
TATGCTAGCATGACAAATAC+AGG - chr3.2:69249664-69249683 None:intergenic 35.0%
TCATGTATGTGTAGATTCAC+TGG + chr3.2:69248904-69248923 MS.gene25923:intron 35.0%
TGAACCTTGGAATTTGAAAG+AGG + chr3.2:69247591-69247610 MS.gene25923:CDS 35.0%
TGAATCTACACATACATGAG+TGG - chr3.2:69248903-69248922 None:intergenic 35.0%
TGGAATTTGAAAGAGGATAC+TGG + chr3.2:69247598-69247617 MS.gene25923:CDS 35.0%
TGTCCTCAAAATTGATCAGT+CGG + chr3.2:69250331-69250350 MS.gene25923:intron 35.0%
TTATTCACGACCAATGTATG+GGG - chr3.2:69249433-69249452 None:intergenic 35.0%
TTCATGATGAATGCCTACTT+TGG + chr3.2:69248512-69248531 MS.gene25923:intron 35.0%
TTCTCTATTTCACTAAGAGG+TGG - chr3.2:69248078-69248097 None:intergenic 35.0%
! CAGATAATGTTGATGAACCT+TGG + chr3.2:69247578-69247597 MS.gene25923:CDS 35.0%
! TATACTGCATTTTCTCCTTC+CGG - chr3.2:69248220-69248239 None:intergenic 35.0%
! TTCATGTGGCATGATTAGTT+TGG + chr3.2:69249564-69249583 MS.gene25923:intron 35.0%
!! GAAGAGGATGCTTTGTTTAA+AGG + chr3.2:69247487-69247506 MS.gene25923:CDS 35.0%
!! GGGTATTGATAATGAAGAAG+AGG + chr3.2:69247471-69247490 MS.gene25923:CDS 35.0%
!! TTCTCTGAGACTAAGACATT+GGG + chr3.2:69248345-69248364 MS.gene25923:CDS 35.0%
!! TTTCTCTGAGACTAAGACAT+TGG + chr3.2:69248344-69248363 MS.gene25923:CDS 35.0%
AAAGTTGGGAACCAGATTTG+CGG + chr3.2:69250173-69250192 MS.gene25923:CDS 40.0%
ATACTTGTCTGCTGTATGCT+TGG - chr3.2:69248945-69248964 None:intergenic 40.0%
CAAACTCTCAAGCATTTCGT+CGG - chr3.2:69248019-69248038 None:intergenic 40.0%
CTATACGTTTGGGTATTAGC+AGG + chr3.2:69250143-69250162 MS.gene25923:CDS 40.0%
GAGGTTAAAGATGGTGAAAG+TGG + chr3.2:69247526-69247545 MS.gene25923:CDS 40.0%
GGGATTCAAGAGTAGTAGAA+AGG + chr3.2:69250365-69250384 MS.gene25923:CDS 40.0%
GTATGTGTAGATTCACTGGT+TGG + chr3.2:69248908-69248927 MS.gene25923:intron 40.0%
GTTAATTGTACCGTGAAAGG+TGG + chr3.2:69248378-69248397 MS.gene25923:CDS 40.0%
TAGAGAAAATGCGCTATGAG+AGG + chr3.2:69248091-69248110 MS.gene25923:CDS 40.0%
TAGTCTCAGAGAAAGGTCTA+AGG - chr3.2:69248338-69248357 None:intergenic 40.0%
TAGTTAGAGACTATAGGCAG+AGG + chr3.2:69249083-69249102 MS.gene25923:intron 40.0%
TATCTGCTCCAACACCAATA+TGG - chr3.2:69247564-69247583 None:intergenic 40.0%
TATGGCGACTGTAGAGTATA+CGG + chr3.2:69248747-69248766 MS.gene25923:intron 40.0%
TTCATACCACTTCTAAGTGC+AGG - chr3.2:69250199-69250218 None:intergenic 40.0%
TTCATGACAATAGGGCAAGT+TGG + chr3.2:69250118-69250137 MS.gene25923:intron 40.0%
TTCTGAACTTCCTCTTGACT+CGG - chr3.2:69247697-69247716 None:intergenic 40.0%
TTGCCCTATTGTCATGAAAC+AGG - chr3.2:69250116-69250135 None:intergenic 40.0%
! AAGCCGACTGATCAATTTTG+AGG - chr3.2:69250337-69250356 None:intergenic 40.0%
! AGAGGATGATGATGTGAGTA+AGG + chr3.2:69247639-69247658 MS.gene25923:CDS 40.0%
! CAAGTTGGAGCTATACGTTT+GGG + chr3.2:69250133-69250152 MS.gene25923:CDS 40.0%
! GATGGTGAAAGTGGTGATTT+TGG + chr3.2:69247535-69247554 MS.gene25923:CDS 40.0%
! TTTGGTGACCATATTGGTGT+TGG + chr3.2:69247553-69247572 MS.gene25923:CDS 40.0%
!! AACAACACTGGTTTAGGGTA+TGG + chr3.2:69248729-69248748 MS.gene25923:intron 40.0%
!! ACACATACATGAGTGGATTG+TGG - chr3.2:69248896-69248915 None:intergenic 40.0%
!! AGTGAGAATGAGAAGCATCT+AGG + chr3.2:69249003-69249022 MS.gene25923:intron 40.0%
!! GAGGATACTGGTGATGTTTT+TGG + chr3.2:69247610-69247629 MS.gene25923:CDS 40.0%
!! GCCTGGTAACGGTAAATTTA+TGG + chr3.2:69248257-69248276 MS.gene25923:CDS 40.0%
!! GGTGATTTTGGTGACCATAT+TGG + chr3.2:69247547-69247566 MS.gene25923:CDS 40.0%
!! TCTCTGAGACTAAGACATTG+GGG + chr3.2:69248346-69248365 MS.gene25923:CDS 40.0%
!! TTTTGCTGTATTGTGACTGC+AGG + chr3.2:69247952-69247971 MS.gene25923:intron 40.0%
!!! GAGAGCTACTTTTCTTCATG+TGG + chr3.2:69249550-69249569 MS.gene25923:intron 40.0%
AATACTGGCAAATCCACCAG+AGG + chr3.2:69248114-69248133 MS.gene25923:CDS 45.0%
AATGCAGTATAGCACGTGTG+TGG + chr3.2:69248229-69248248 MS.gene25923:CDS 45.0%
AATTGTACCGTGAAAGGTGG+TGG + chr3.2:69248381-69248400 MS.gene25923:CDS 45.0%
ATGCAGTATAGCACGTGTGT+GGG + chr3.2:69248230-69248249 MS.gene25923:CDS 45.0%
ATGCGCTATGAGAGGAATAC+TGG + chr3.2:69248099-69248118 MS.gene25923:CDS 45.0%
CAAATCCACCAGAGGTGAAA+TGG + chr3.2:69248122-69248141 MS.gene25923:CDS 45.0%
CACGGAATATGCCAGAATAG+TGG - chr3.2:69248802-69248821 None:intergenic 45.0%
CATACTGCATGCCACTATTC+TGG + chr3.2:69248788-69248807 MS.gene25923:intron 45.0%
GCCATGCTGTATATGTGCTT+CGG + chr3.2:69250284-69250303 MS.gene25923:intron 45.0%
GCTACTCAACAGTGCTATAG+CGG + chr3.2:69248600-69248619 MS.gene25923:intron 45.0%
GCTATAGCACTGTTGAGTAG+CGG - chr3.2:69248601-69248620 None:intergenic 45.0%
GGAAGTTCAGAAGCTTGAGA+AGG + chr3.2:69247705-69247724 MS.gene25923:CDS 45.0%
GGTGAGCTTAATGTTGTCGA+GGG + chr3.2:69247670-69247689 MS.gene25923:CDS 45.0%
TAGCAGGGCTTTGCAAAGTT+GGG + chr3.2:69250159-69250178 MS.gene25923:CDS 45.0%
TGAAACACCACCACCTTTCA+CGG - chr3.2:69248391-69248410 None:intergenic 45.0%
TGGTGAGCTTAATGTTGTCG+AGG + chr3.2:69247669-69247688 MS.gene25923:CDS 45.0%
TTAGCAGGGCTTTGCAAAGT+TGG + chr3.2:69250158-69250177 MS.gene25923:CDS 45.0%
! AATGGAGCGTCTAAAGCAAG+AGG + chr3.2:69248140-69248159 MS.gene25923:CDS 45.0%
! ACTGCAGGAACGAAAGCTTT+TGG + chr3.2:69247967-69247986 MS.gene25923:intron 45.0%
! CATTGCTGTTCTCGAAGGTT+TGG + chr3.2:69247741-69247760 MS.gene25923:intron 45.0%
! GCAAGTTGGAGCTATACGTT+TGG + chr3.2:69250132-69250151 MS.gene25923:CDS 45.0%
! GGATGATGATGTGAGTAAGG+AGG + chr3.2:69247642-69247661 MS.gene25923:CDS 45.0%
! TGATGATGTGAGTAAGGAGG+AGG + chr3.2:69247645-69247664 MS.gene25923:CDS 45.0%
! TTTCTTGCTTTGGCCTTTCC+AGG - chr3.2:69250397-69250416 None:intergenic 45.0%
! TTTTCTCCTTCCGGTTCCAT+AGG - chr3.2:69248211-69248230 None:intergenic 45.0%
AAACAGAGGAGATGGGGAGT+TGG + chr3.2:69249056-69249075 MS.gene25923:intron 50.0%
AACAGAGGAGATGGGGAGTT+GGG + chr3.2:69249057-69249076 MS.gene25923:intron 50.0%
AGACTAAGACATTGGGGCTC+TGG + chr3.2:69248352-69248371 MS.gene25923:CDS 50.0%
AGAGACTATAGGCAGAGGCA+GGG + chr3.2:69249088-69249107 MS.gene25923:intron 50.0%
AGTAGCACGATGATCGAGCA+TGG - chr3.2:69248313-69248332 None:intergenic 50.0%
CTACTCTTGAATCCCTCGTC+AGG - chr3.2:69250360-69250379 None:intergenic 50.0%
GACTAAGACATTGGGGCTCT+GGG + chr3.2:69248353-69248372 MS.gene25923:CDS 50.0%
GATGATAAGGGACGTGCCTA+TGG + chr3.2:69248192-69248211 MS.gene25923:CDS 50.0%
GATGTGAGTAAGGAGGAGGT+TGG + chr3.2:69247649-69247668 MS.gene25923:CDS 50.0%
GCCGAAGCACATATACAGCA+TGG - chr3.2:69250288-69250307 None:intergenic 50.0%
GTAGCACGATGATCGAGCAT+GGG - chr3.2:69248312-69248331 None:intergenic 50.0%
TAGACGCTCCATTTCACCTC+TGG - chr3.2:69248133-69248152 None:intergenic 50.0%
TAGAGACTATAGGCAGAGGC+AGG + chr3.2:69249087-69249106 MS.gene25923:intron 50.0%
TAGCACGATGATCGAGCATG+GGG - chr3.2:69248311-69248330 None:intergenic 50.0%
TGGGGCAGTGTTGTCAATTG+TGG + chr3.2:69248546-69248565 MS.gene25923:intron 50.0%
! GAGCTCATTGCTGTTCTCGA+AGG + chr3.2:69247736-69247755 MS.gene25923:CDS 50.0%
! GCGTCTAAAGCAAGAGGAAG+CGG + chr3.2:69248146-69248165 MS.gene25923:CDS 50.0%
! GGTGACTTGATTGCTGCTTC+TGG + chr3.2:69247988-69248007 MS.gene25923:CDS 50.0%
! GTGAAAGGTGGTGGTGTTTC+AGG + chr3.2:69248390-69248409 MS.gene25923:CDS 50.0%
AAGGGACGTGCCTATGGAAC+CGG + chr3.2:69248198-69248217 MS.gene25923:CDS 55.0%
ACGCTCCATTTCACCTCTGG+TGG - chr3.2:69248130-69248149 None:intergenic 55.0%
CTAAGTGCAGGCCGCAAATC+TGG - chr3.2:69250187-69250206 None:intergenic 55.0%
GTGTGGGTTCAGCCTGGTAA+CGG + chr3.2:69248246-69248265 MS.gene25923:CDS 55.0%
TATAGGCAGAGGCAGGGTAG+CGG + chr3.2:69249094-69249113 MS.gene25923:intron 55.0%
TTGCGGCCTGCACTTAGAAG+TGG + chr3.2:69250190-69250209 MS.gene25923:CDS 55.0%
! ATCAGTCGGCTTCCTGACGA+GGG + chr3.2:69250345-69250364 MS.gene25923:intron 55.0%
AGGAGGGGAGAGAGTGAGGA+AGG + chr3.2:69247411-69247430 MS.gene25923:CDS 60.0%
ATAGGCAGAGGCAGGGTAGC+GGG + chr3.2:69249095-69249114 MS.gene25923:intron 60.0%
GACGTGCCTATGGAACCGGA+AGG + chr3.2:69248202-69248221 MS.gene25923:CDS 60.0%
GTGAAGGAGGGGAGAGAGTG+AGG + chr3.2:69247407-69247426 MS.gene25923:CDS 60.0%
TGTCGAGGGTCCGAGTCAAG+AGG + chr3.2:69247684-69247703 MS.gene25923:CDS 60.0%
! GATCAGTCGGCTTCCTGACG+AGG + chr3.2:69250344-69250363 MS.gene25923:intron 60.0%
GCACGTGTGTGGGTTCAGCC+TGG + chr3.2:69248240-69248259 MS.gene25923:CDS 65.0%
TAGGCAGAGGCAGGGTAGCG+GGG + chr3.2:69249096-69249115 MS.gene25923:intron 65.0%
!! CAGGGTAGCGGGGCAGAGAT+GGG + chr3.2:69249106-69249125 MS.gene25923:intron 65.0%
!! GCGGGGCAGAGATGGGTTAC+TGG + chr3.2:69249113-69249132 MS.gene25923:intron 65.0%
!! GCAGGGTAGCGGGGCAGAGA+TGG + chr3.2:69249105-69249124 MS.gene25923:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 69247397 69250441 69247397 ID=MS.gene25923
chr3.2 mRNA 69247397 69250441 69247397 ID=MS.gene25923.t1;Parent=MS.gene25923
chr3.2 exon 69247397 69247757 69247397 ID=MS.gene25923.t1.exon1;Parent=MS.gene25923.t1
chr3.2 CDS 69247397 69247757 69247397 ID=cds.MS.gene25923.t1;Parent=MS.gene25923.t1
chr3.2 exon 69247974 69248411 69247974 ID=MS.gene25923.t1.exon2;Parent=MS.gene25923.t1
chr3.2 CDS 69247974 69248411 69247974 ID=cds.MS.gene25923.t1;Parent=MS.gene25923.t1
chr3.2 exon 69250131 69250211 69250131 ID=MS.gene25923.t1.exon3;Parent=MS.gene25923.t1
chr3.2 CDS 69250131 69250211 69250131 ID=cds.MS.gene25923.t1;Parent=MS.gene25923.t1
chr3.2 exon 69250350 69250441 69250350 ID=MS.gene25923.t1.exon4;Parent=MS.gene25923.t1
chr3.2 CDS 69250350 69250441 69250350 ID=cds.MS.gene25923.t1;Parent=MS.gene25923.t1
Gene Sequence

>MS.gene25923

ATGAATGAAGGTGAAGGAGGGGAGAGAGTGAGGAAGGAAGTTGATGATGAACAAAAATGGTGGTTAGAAGAAAAGGGTATTGATAATGAAGAAGAGGATGCTTTGTTTAAAGGAATTGATAAGGAAACTGAGGTTAAAGATGGTGAAAGTGGTGATTTTGGTGACCATATTGGTGTTGGAGCAGATAATGTTGATGAACCTTGGAATTTGAAAGAGGATACTGGTGATGTTTTTGGTTTCAAAGAGGATGATGATGTGAGTAAGGAGGAGGTTGGTGAGCTTAATGTTGTCGAGGGTCCGAGTCAAGAGGAAGTTCAGAAGCTTGAGAAGGAAGAGAAAGAGCTCATTGCTGTTCTCGAAGGTTTGGCTTAAACCCCTTTTGTTGTTACTTGTTAGTTTGTTAGTTTTAGACATTGTTGAAGGTTTGGTGTAACGAATTGATGTACTGTTGAAGATTTTCTAGATATAATTTGAACGTGAATGTTGAATGGAATCGAAAGGTGTTGCGATATATTGAATGAAACTGAATTGTTGTCAAGGTGAGTGATGTCATGTTTTTGCTGTATTGTGACTGCAGGAACGAAAGCTTTTGGTGACTTGATTGCTGCTTCTGGAATCACCGACGAAATGCTTGAGAGTTTGATTGCGTTGAAAGATCTTAAAGATGTTGATGGGTTGCCACCTCTTAGTGAAATAGAGAAAATGCGCTATGAGAGGAATACTGGCAAATCCACCAGAGGTGAAATGGAGCGTCTAAAGCAAGAGGAAGCGGCGAAAGCTAGAGTGAGACAAGTAGATGATAAGGGACGTGCCTATGGAACCGGAAGGAGAAAATGCAGTATAGCACGTGTGTGGGTTCAGCCTGGTAACGGTAAATTTATGGTTAACGATAAAGAGTTTGACGTCTATTTCCCCATGCTCGATCATCGTGCTACTCTCCTTAGACCTTTCTCTGAGACTAAGACATTGGGGCTCTGGGATGTTAATTGTACCGTGAAAGGTGGTGGTGTTTCAGGTATAGTTAATGACTTTTAAGTTTTATTTACTTTTGTTTATGTTTCCTGAAGTTCTATCCTATCATTAGCATAAATTTCTATCATATTGAATACATTTTTTTCATGATGAATGCCTACTTTGGTAATTTGAGTTTGGGGCAGTGTTGTCAATTGTGGATTGCATGAAATAGTGATTTGTTTAAATGCCGCTACTCAACAGTGCTATAGCGGTGCAATAGCCGCAATTTGACAATGTTTTGTACTAAATAGTGTATTGGAGAACAATAGCGATTTATTCAAATTATGCTACGTTATGGTGCCGCTATAACCCCTATTTAACAACACTGGTTTAGGGTATGGCGACTGTAGAGTATACGGTATGCTGTCTGCATGTAACATACTGCATGCCACTATTCTGGCATATTCCGTGCATGATACAGTACAAAATGGCATGCATGTTTGACACTTAAAGGTAGTGTTGAGATTATTGAGAAAAGTATTCCACAATCCACTCATGTATGTGTAGATTCACTGGTTGGAATAAGTCTTTCCAAGCATACAGCAGACAAGTATTTGCTTAAGAGATTGGAACAAAAAGCAAGTTTGTAATTAGTGAGAATGAGAAGCATCTAGGTCTGATGTGTTTTTCTCCAATGAATAAGAAAAACAGAGGAGATGGGGAGTTGGGTTATAGTTAGAGACTATAGGCAGAGGCAGGGTAGCGGGGCAGAGATGGGTTACTGGTTATTAACTTATTAAGCATTTATATGGTGCAAGAAATTTGAACATGTTTATGTCTTATCGCTTTTAAAACTAGTTTAGATGTAACCAACAAAAAAACTAGTTTTAGATATAAATGATCCAAATGCATCTCTTGGTCTTTTTTGCTTTCAAAATTGTTTTTAAGTTTTGATTCAGTACAGTTTTTAAGAACTAAGGACCCGTTTACTTTGAAGAACTGTGTCCTGTTTTCATTTAGATTTTATGAGTAAAAATAGTCTTCTATGAACCACCATATGCTGAACTTTCATTTTTTTACCCCATACATTGGTCGTGAATAATTGTGGTAGTTTGGAAACAATGAAACGACCTATTATTCATTTCCTTTATCTCTTTCATTTTTCATATGGATGCTCATTGTGATGCTTGCAAAAATAAGAGAGCTACTTTTCTTCATGTGGCATGATTAGTTTGGCCTGCTTTTATTTTAAAAATGAATATCTAAAACGATTAAAGTAAATGAGGCATAATAAAACCGAACTAATGAAACCTGTATTTGTCATGCTAGCATATGCCTTTGCGATATGATTCATGAATCTTGAGCTTTCTTTTATTTTGATCAGGAAGACTATGCATGTAAATGCAAGATATAAGGGAGAAAATATTTATGAACTGGATTTTTCTCTGTTTTGTGTTTGCTACAGCTTTCTCTGATTTGAAAAATATGAACTCTACAAGGCTGTCATATTTTAATTTCCTTGACATTTTTTGGTTTTATTTAGGGACAAAATGTTCTGCCTCTCTAATTTTGACATTTAAATGTTTTAACTTTAATAAGTCTCCAAATACACACTTATATTCAACTTCCACCAACAATCAAACAATAAAGAAAGCTTAGCATTACAGAAATTGAAAAAAGTGCTGATCTGATGATATACTGTCAAAGTTCGAAAGTTTAATTCCAATTCATTTTTCCCTTCGTATTATCTTAATCAACGAAACCTGTTTCATGACAATAGGGCAAGTTGGAGCTATACGTTTGGGTATTAGCAGGGCTTTGCAAAGTTGGGAACCAGATTTGCGGCCTGCACTTAGAAGTGGTATGAACTTATTTGTCTTTTTATACTGATTTATTTTTCTACGCCTTTTTTCATGTTAGTCTTTTACTTGTGGCCATGCTGTATATGTGCTTCGGCATTGATGAATCACTAAACTATTTTGTCCTCAAAATTGATCAGTCGGCTTCCTGACGAGGGATTCAAGAGTAGTAGAAAGGAAAAAACCTGGAAAGGCCAAAGCAAGAAAAAGTTTTCAATGGGTCAAGCGTTGA

Protein sequence

>MS.gene25923.t1

MNEGEGGERVRKEVDDEQKWWLEEKGIDNEEEDALFKGIDKETEVKDGESGDFGDHIGVGADNVDEPWNLKEDTGDVFGFKEDDDVSKEEVGELNVVEGPSQEEVQKLEKEEKELIAVLEGTKAFGDLIAASGITDEMLESLIALKDLKDVDGLPPLSEIEKMRYERNTGKSTRGEMERLKQEEAAKARVRQVDDKGRAYGTGRRKCSIARVWVQPGNGKFMVNDKEFDVYFPMLDHRATLLRPFSETKTLGLWDVNCTVKGGGVSGQVGAIRLGISRALQSWEPDLRPALRSVGFLTRDSRVVERKKPGKAKARKSFQWVKR