AlfalfaGEDB | MS.gene26817

M. sativa cultivar XinJiangDaYe / MS.gene26817

KEGG: K21362
GO: GO:0003674 GO:0003824 GO:0004553 GO:0005975 GO:0008150 GO:0008152 GO:0016787 GO:0016798 GO:0044238 GO:0071704
PFAM: PF00232.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26817.t1	XP_013458327.1	98.6	574	6	1	1	572	1	574	0.00E+00	1153.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26817.t1	Q8L6H7	70.4	547	146	4	42	572	42	588	7.6e-231	801.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26817.t1	A0A072UTJ9	98.6	574	6	1	1	572	1	574	0.0e+00	1153.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene26817	0.813851	2.08E-51	-1.69E-46
MS.gene049257	MS.gene26817	0.835635	1.50E-56	-1.69E-46
MS.gene049633	MS.gene26817	0.830564	2.74E-55	-1.69E-46
MS.gene050403	MS.gene26817	0.837438	5.20E-57	-1.69E-46
MS.gene050444	MS.gene26817	0.8009	1.16E-48	-1.69E-46
MS.gene05081	MS.gene26817	0.836227	1.06E-56	-1.69E-46
MS.gene050812	MS.gene26817	0.819512	1.12E-52	-1.69E-46
MS.gene050904	MS.gene26817	0.821031	5.01E-53	-1.69E-46
MS.gene051244	MS.gene26817	0.84648	2.12E-59	-1.69E-46
MS.gene051317	MS.gene26817	0.807701	4.44E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26817.t1	MTR_4g122980	98.606	574	6	1	1	572	1	574	0.0	1178
MS.gene26817.t1	MTR_4g083000	25.478	471	260	15	144	534	46	505	1.31e-32	131
MS.gene26817.t1	MTR_4g083000	26.492	419	229	13	186	534	2	411	1.35e-31	127
MS.gene26817.t1	MTR_4g066580	27.913	412	218	13	181	522	103	505	3.04e-31	128
MS.gene26817.t1	MTR_4g081530	28.074	431	224	16	181	536	87	506	3.56e-31	127
MS.gene26817.t1	MTR_4g066240	28.058	417	227	14	181	530	100	510	3.64e-30	124
MS.gene26817.t1	MTR_3g028720	26.877	413	221	13	181	522	102	504	5.48e-29	121
MS.gene26817.t1	MTR_2g098790	25.355	422	232	13	181	530	102	512	7.41e-29	120
MS.gene26817.t1	MTR_4g066590	25.882	425	230	12	181	532	97	509	1.11e-28	120
MS.gene26817.t1	MTR_4g066240	27.990	418	227	15	181	530	100	511	1.24e-28	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26817.t1	AT3G06510	66.025	571	170	4	4	571	1	550	0.0	795
MS.gene26817.t1	AT3G06510	62.314	605	170	5	4	571	1	584	0.0	779
MS.gene26817.t1	AT3G60140	26.834	477	261	18	157	559	68	530	4.00e-32	131
MS.gene26817.t1	AT3G60130	28.676	408	221	14	181	530	42	437	1.63e-31	127
MS.gene26817.t1	AT3G60120	27.083	432	238	13	169	530	65	489	2.16e-31	128
MS.gene26817.t1	AT1G26560	25.219	456	247	15	160	532	64	508	2.21e-31	128
MS.gene26817.t1	AT3G60130	28.162	419	220	14	181	530	42	448	3.70e-31	127
MS.gene26817.t1	AT3G60130	28.162	419	220	14	181	530	94	500	4.71e-31	127
MS.gene26817.t1	AT5G44640	26.683	416	238	10	181	534	95	505	2.01e-30	125
MS.gene26817.t1	AT2G44470	27.033	455	244	17	164	542	75	517	2.87e-30	125

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Find 145 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAGTGGATTATTTCA+TGG	0.355262	8.2:+10717207	MS.gene26817:CDS
AACAGATGGTAAGAAGGGCG+AGG	0.630415	8.2:-10718585	None:intergenic
AACAGTAACACCAGTATCCT+TGG	0.478658	8.2:-10716788	None:intergenic
AACATGCGATATAAGCCATC+AGG	0.498179	8.2:-10718212	None:intergenic
AACTCATCAAATCAAATAGT+TGG	0.480032	8.2:+10717892	MS.gene26817:CDS
AACTGCGACAAGTCCAAACT+TGG	0.422766	8.2:-10718535	None:intergenic
AAGTAAGCATACAGAAGACA+TGG	0.587256	8.2:-10717538	None:intergenic
AATGATGAGTACAGTGAATC+TGG	0.391568	8.2:+10718176	MS.gene26817:CDS
AATGCTCCAAGAGATATGGT+CGG	0.704069	8.2:-10718322	None:intergenic
ACATTCCTAATGTAACTGCT+TGG	0.569411	8.2:+10715962	MS.gene26817:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTCACCCAAAATTACAA+AGG	-	chr8.2:10718658-10718677	None:intergenic	30.0%
ACAAACAAATAAGCCATGTT+TGG	-	chr8.2:10715643-10715662	None:intergenic	30.0%
ACCAAAGTCTACAAATGTTT+AGG	+	chr8.2:10716312-10716331	MS.gene26817:intron	30.0%
ACCTAAACATTTGTAGACTT+TGG	-	chr8.2:10716316-10716335	None:intergenic	30.0%
ACTTATGTAAGCAATTCACT+TGG	+	chr8.2:10717037-10717056	MS.gene26817:intron	30.0%
ACTTCAAAATCCAATGTTGA+CGG	-	chr8.2:10716042-10716061	None:intergenic	30.0%
ATAAACACTTACGACATGTT+TGG	-	chr8.2:10715499-10715518	None:intergenic	30.0%
ATACAAACAAATGCCACTAA+AGG	-	chr8.2:10717252-10717271	None:intergenic	30.0%
ATCGTATTTGAATTGCACTT+TGG	+	chr8.2:10716443-10716462	MS.gene26817:intron	30.0%
ATTACCGGTAATGTTGAAAT+CGG	-	chr8.2:10715076-10715095	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	10714919	10719143	10714919	ID=MS.gene26817
chr8.2	mRNA	10714919	10719143	10714919	ID=MS.gene26817.t1;Parent=MS.gene26817
chr8.2	exon	10714919	10715090	10714919	ID=MS.gene26817.t1.exon1;Parent=MS.gene26817.t1
chr8.2	CDS	10714919	10715090	10714919	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10715671	10716001	10715671	ID=MS.gene26817.t1.exon2;Parent=MS.gene26817.t1
chr8.2	CDS	10715671	10716001	10715671	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10716738	10716876	10716738	ID=MS.gene26817.t1.exon3;Parent=MS.gene26817.t1
chr8.2	CDS	10716738	10716876	10716738	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10717073	10717239	10717073	ID=MS.gene26817.t1.exon4;Parent=MS.gene26817.t1
chr8.2	CDS	10717073	10717239	10717073	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10717481	10717702	10717481	ID=MS.gene26817.t1.exon5;Parent=MS.gene26817.t1
chr8.2	CDS	10717481	10717702	10717481	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10717891	10718059	10717891	ID=MS.gene26817.t1.exon6;Parent=MS.gene26817.t1
chr8.2	CDS	10717891	10718059	10717891	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10718140	10718373	10718140	ID=MS.gene26817.t1.exon7;Parent=MS.gene26817.t1
chr8.2	CDS	10718140	10718373	10718140	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10718465	10718614	10718465	ID=MS.gene26817.t1.exon8;Parent=MS.gene26817.t1
chr8.2	CDS	10718465	10718614	10718465	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10718700	10718829	10718700	ID=MS.gene26817.t1.exon9;Parent=MS.gene26817.t1
chr8.2	CDS	10718700	10718829	10718700	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1
chr8.2	exon	10719124	10719143	10719124	ID=MS.gene26817.t1.exon10;Parent=MS.gene26817.t1
chr8.2	CDS	10719124	10719143	10719124	ID=cds.MS.gene26817.t1;Parent=MS.gene26817.t1

Gene Sequence

>MS.gene26817

ATGACGATAGTTTCACTCTTCCTAACTGCCACTAAACTCGCCGGAGCTTTAGTCACTCTCACTGTCGCCGCCAATGCATTTTCCTTCTCTCGTTTTCGCAACAAAAATCTTCGCCGTTTCACTTCCCCTATCGATGAATCCTCCGATACTCTCGCCGATTTCAACATTACCGGTAATAATCTCTACTATGATTCATTAATTGGTTTGCAAATTGCAATTAACTTCAGTTATGTTATTTCTTTGCAAACATGCATGCATGCTTGACGATGTGATTAATAAAATAGATTAAGTCTCTCTTTGGATACACAACTTAATTAAGTGTTCATTAGCATAAACGCTTATCATATAATGTCATCTTTGGATAAATAACTTAATTTGCAACTTTCATCATAAGAAGCGCTTATGGATAAGCTATTTATATAACACTTAAGATAAAATTAAGTCTATGTTTATGTATAATAAATAAGCTGTCAAAATAACTTGAAAACAAGTTATGAACATGTCATAAGTTGTTTTCATAAGTTCTTTCAGAGTCTCACAAGTGCTTATACAAGGAAATAGCCTCAAATAAGTCAATCCAAACATGTCGTAAGTGTTTATGTATTAACGATCTTTGAGAGCTTATGGAAATAAGCCGAAAACATGTCCATATGTTGTTTCCATAAGTTCTTACAGAGTTTCACAAATGCTTATGTGAGTATATAAGTTCAATTGAGACAATCCAAACATGGCTTATTTGTTTGTTTTTGCAGAAGAAGAAAATGGGTTTTTCTTTGGTCTAGCGACAGCACCGGCACATGTTGAGGACAGGCTTGATGATGCTTGGATTCAGTTTGCTGAACAAGAGAGTGTTGCCGGTGCTGAGCAGAAAGTAGATGCTTTGATGGGCTCTGCCACTGCTGATGGTGGGTCTCAACAAGCCATATCATCTGCACAACGAGGGCTTAAGGGTAACAAGAAGTCTCTTAAGGTAGCTATGGAGGCCATGATCAGAGGATTTGAGAAATACATGGAAGTAGATGGACAGGAAGGAGAAGAAGAACACATTCCTAATGTAACTGCTTGGCATAATGTTCCACATCCGTAAGCTCTCACTTGCTTTGTTTTTTAATGTCATTTGCCGTCAACATTGGATTTTGAAGTGAAAGGGATGGTGGGTTTTCATTGTAAGCTAATATTGTTGTCAAGGATTGCATTGCATTTCTGTATATTTCTTTGTATGCCAAGACTTTACAGAAGATTCTAGCCATACAAGATATGGTAGTTACAAATAAATGGTATCCTAATACAATCAATCAGAATCAATAAATTTGTAACAAATCAAGGCTGAAGATATTGTAACATCCCCCCTTAAACTCAAGTCACTGTGGAGTAAACCAACTTGATTATGGAAACCAAAGTCTACAAATGTTTAGGTGTATGAGGATGCCTATAGAGAGAAGGCAATGGACACCATAAGTGATATGTTGAATAAAGCGATTGCCAATTTATTTATGCCTGATAGATACACTCATGGAAGATATCATCGTATTTGAATTGCACTTTGGCTATCGCAATGAAGCTTAGTATGAGAAGACTAGGAAAATCACAGTTAAACAAGTACCTAGCATATCCAAAATATTTCATGATATCTTGTATGAATTCTTCCAATAATTCCTTATTTAAATTTTTTTTGATAAAAATTATATTGCTTTCTCAAACTGAAAATGGAAAAGTTACTCTTCGTCATAGGTTACCGCGTCCTCTGTGTGTGTCTGTGTGTGTGTTAAATTGTAATATTGTTGCTTAGTAGAATTTAAAATTAATGTCTGATTTTCAGGGAGGAGAGATTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCCAAGGATACTGGTGTTACTGTTTTTCGTATGGGAATTGACTGGTCAAGAGTCATGCCTCATGAGCCAGTAAACAGCCTTAAAGAATCTGTAAGTCAAATTCTGACCTTTCTGTATGATGATTAGTTATCGTGGTACTCATAGTTTAGCATATATTAGTGGATGGAGCTCATGGATACGTTTCTCAATTTCCATAGTTTTATCTCAAACTTTACTGACCATTGACCAATGCATCTGGCAAAAGAGATTTACTTATGTAAGCAATTCACTTGGCGTTCTTTCTTAGGTCAACTATGCTGCATTGGAGCGCTATAAGTGGATTATCAATAGGGTTCGATCATATGGAATGAAGGTGATGCTCACTCTTTTTCATCACTCACTTCCACCCTGGGCCGGTGATTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGATTTTACCAGGTAGTTTTTCCTTTAGTGGCATTTGTTTGTATGCCATCGAACTCTGCCTGCTGAGGATGACTCAATTTTCATCTCAGACTGACTGCTAGTCTGTACTAGTTTTATCGAGTCGACTAATCCCATGTAGCATATTTGCGAATCTCTCTTGAAACTGGTATCATCATGTTATCTAGTTTTATGGAGTTACTAATCTAATGTAGCATGTTTGTGATTTCTCTCACATGTTTCTCAATCAATGCAGGCTTGTTGTTGACAGTGTATCAGATTTAGTAGACTATTGGGTAACATTTAACGAGCCCCATGTCTTCTGTATGCTTACTTACTGTTCTGGAACCTGGCCTGGTGGACATCCTGATATGCTAGAGGCTGCTACTTCCGCACTTCCTACAGGTGTTTTCCAGCAGGCCATGCATTGGATATCTGTTGCACACTCAAAGGCATATGATTACATCCACGAACTCAGGTGAATATGTGTCAGAGGTTTCAGAATTTATGGCAAGTTTCAGCCATATCATTCTAGTGCAACTAGATTTTTTCCGCCTTCCCACCCTTTCTCATTTAGCAGTCTGAACATTTGAAGCTGACTGCACTACTTGGTTACTTTTCTAATTTTACAATTGTACTTCTCTGAACAATATTAACATTTTGCAGTAACTCATCAAATCAAATAGTTGGTGTCGCACATCATGTGTCGTTTATGCGACCCTATGGTCTGTTTGATATTGCTGCCGTTTCACTGGCTAATTCATTGAGTCTCTTCCCATTCATCGATGAAATATCCAAAAAGATGGACTTTATAGGCGTTAACTATTACGGCCAGGTTTGATTTTTCGATCCTAACAATGCATTCTGTACGATACCAGACATGTACTCACGCGACGATTCTAACATGTACATCAGGAAGCGATTTCGGGTGCTGGCCTGAAGCTTGTGGAAAATGATGAGTACAGTGAATCTGGACGTGGAGTATATCCTGATGGCTTATATCGCATGTTACTTCAGTTCCATGAAAGATACAAGCATCTAAATGTCCCTTTCATTATTGCTGAAAATGGAATTGCAGATGAGACTGATTTGATCCGCCGACCATATCTCTTGGAGCATTTACTTGCTGTTTATGCAGCTATGATCGAGGTTTTGACTCTAGAATTTTCAGTTTTCAAAATTGAATTGCTCTTTCATAAACACTAATTGCAGCTTATACCTTCTTGTAACTGTTCTACAGGGTGTGCCTGTGCTTGGTTACCTCTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTCGCAGTTGACCGAGCAAATAATCTTGCACGGATTCCTCGCCCTTCTTACCATCTGTTTTCTAAAGTTTGTATTTGCTGTCTTCATTTGTTTCTCTATAATATTTCCTTTGTAATTTTGGGTGACATTTTTAATGGCCTCTTGATTGCAGGTTGTAAGTACCGGTAAAGTTACACGCGATGATCGTGATAACGCTTGGAATGAACTTCAAAGAGCCGCTAAAGAGAAGAAGACAAGACCATTTTATCGGGCTGTGGACAAAAATGGTTTAATGTTAGCAGGTAATAATGATATACTCTTTTTTTTGAGAATTCAGACAAAAATGCGTTTCTATTGATTTGTGGGGAGTAACTTAGTTATCCTCTATGCTTGATATGAGCATAAAGCTTTAAATATTGCTCTTACTGTCGATAGAATTAATGCTTTAGCTACCATATGCCAACATATTACTAGATAAACCGATAGTTACTACCTTTGACAGCAGTTGCATAATGAGCTTTGTTTTAGTCAAGACCGAACCAATTATAAATAGAATGGATTATTAACTACACCAACCTTAATTTTATAAGTTGCAGGTAAGGTTCAGGGCAATTAG

Protein sequence

>MS.gene26817.t1

MTIVSLFLTATKLAGALVTLTVAANAFSFSRFRNKNLRRFTSPIDESSDTLADFNITEEENGFFFGLATAPAHVEDRLDDAWIQFAEQESVAGAEQKVDALMGSATADGGSQQAISSAQRGLKGNKKSLKVAMEAMIRGFEKYMEVDGQEGEEEHIPNVTAWHNVPHPEERLRFWSDPDTELKLAKDTGVTVFRMGIDWSRVMPHEPVNSLKESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGDYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWVTFNEPHVFCMLTYCSGTWPGGHPDMLEAATSALPTGVFQQAMHWISVAHSKAYDYIHELSNSSNQIVGVAHHVSFMRPYGLFDIAAVSLANSLSLFPFIDEISKKMDFIGVNYYGQEAISGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLNVPFIIAENGIADETDLIRRPYLLEHLLAVYAAMIEGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKVVSTGKVTRDDRDNAWNELQRAAKEKKTRPFYRAVDKNGLMLAGKVQGN